Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062804.t1 | XP_003615000.1 | 95.9 | 488 | 20 | 0 | 1 | 488 | 17 | 504 | 1.00E-280 | 975.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062804.t1 | Q12626 | 29.3 | 365 | 186 | 12 | 172 | 483 | 66 | 411 | 3.7e-37 | 157.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062804.t1 | G7KA56 | 95.9 | 488 | 20 | 0 | 1 | 488 | 17 | 504 | 7.4e-281 | 975.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049264 | MS.gene062804 | 0.815754 | 7.86E-52 | -1.69E-46 |
| MS.gene052746 | MS.gene062804 | 0.800993 | 1.11E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062804.t1 | MTR_5g062290 | 95.706 | 489 | 21 | 0 | 1 | 489 | 17 | 505 | 0.0 | 973 |
| MS.gene062804.t1 | MTR_5g062190 | 81.263 | 491 | 90 | 2 | 1 | 489 | 17 | 507 | 0.0 | 846 |
| MS.gene062804.t1 | MTR_3g009030 | 56.276 | 478 | 200 | 5 | 15 | 489 | 26 | 497 | 0.0 | 558 |
| MS.gene062804.t1 | MTR_3g009020 | 56.118 | 474 | 197 | 6 | 20 | 489 | 7 | 473 | 0.0 | 557 |
| MS.gene062804.t1 | MTR_8g091310 | 56.067 | 478 | 198 | 6 | 19 | 489 | 34 | 506 | 0.0 | 553 |
| MS.gene062804.t1 | MTR_3g008960 | 54.082 | 490 | 213 | 8 | 1 | 489 | 11 | 489 | 0.0 | 545 |
| MS.gene062804.t1 | MTR_3g009010 | 52.642 | 492 | 219 | 8 | 1 | 489 | 82 | 562 | 0.0 | 536 |
| MS.gene062804.t1 | MTR_3g086750 | 48.312 | 474 | 241 | 2 | 18 | 489 | 34 | 505 | 1.05e-167 | 484 |
| MS.gene062804.t1 | MTR_5g061980 | 55.160 | 281 | 65 | 5 | 150 | 430 | 87 | 306 | 3.72e-93 | 286 |
| MS.gene062804.t1 | MTR_4g035760 | 71.223 | 139 | 40 | 0 | 351 | 489 | 41 | 179 | 1.94e-69 | 219 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 106 sgRNAs with CRISPR-Local
Find 263 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAAAGAAACTTTCAGATTT+AGG | 0.092819 | 5.2:-52557574 | MS.gene062804:CDS |
| GCCCATAACCATTTGTTATT+TGG | 0.116919 | 5.2:+52557068 | None:intergenic |
| AAAGCTCAATTAGATGTTTA+TGG | 0.183154 | 5.2:-52553400 | MS.gene062804:CDS |
| CAAAGAAACTTTCAGATTTA+GGG | 0.194710 | 5.2:-52557573 | MS.gene062804:CDS |
| CATTCCAAACAAAGACTTCT+TGG | 0.218905 | 5.2:-52557979 | MS.gene062804:intron |
| CCCACTAGCTAATGGCCTTA+TGG | 0.221566 | 5.2:-52554007 | MS.gene062804:CDS |
| TGTCACTTTCTTTAACAATA+TGG | 0.234715 | 5.2:+52557471 | None:intergenic |
| CAACATTTGGGTATGCATAT+TGG | 0.248323 | 5.2:-52553372 | MS.gene062804:CDS |
| AACATTTGGGTATGCATATT+GGG | 0.291161 | 5.2:-52553371 | MS.gene062804:CDS |
| GTCCACTACTACAGCATCTT+TGG | 0.300446 | 5.2:-52553970 | MS.gene062804:CDS |
| TTCAATTTAAACTTCTGATT+TGG | 0.308423 | 5.2:+52558065 | None:intergenic |
| CCACTAGCTAATGGCCTTAT+GGG | 0.309837 | 5.2:-52554006 | MS.gene062804:CDS |
| TTCCAAATAACAAATGGTTA+TGG | 0.317163 | 5.2:-52557070 | MS.gene062804:CDS |
| TGATGTATCTGCAGAAAATA+TGG | 0.318498 | 5.2:-52554663 | MS.gene062804:intron |
| AATGATACCTTCATTATTTG+TGG | 0.330176 | 5.2:+52557034 | None:intergenic |
| GCACTCTTCTATTGTATTTG+TGG | 0.331566 | 5.2:-52554073 | MS.gene062804:CDS |
| CTAACCAAGAAGTCTTTGTT+TGG | 0.336732 | 5.2:+52557975 | None:intergenic |
| GCAAACCGCTCAAGTGCTTC+TGG | 0.344807 | 5.2:-52557736 | MS.gene062804:CDS |
| GTTGCTGAGTGGCAAGTTAA+AGG | 0.346227 | 5.2:-52553454 | MS.gene062804:CDS |
| GCAGCACCTGGCTCTCAAAA+TGG | 0.347913 | 5.2:-52554615 | MS.gene062804:CDS |
| TCCAAATAACAAATGGTTAT+GGG | 0.378270 | 5.2:-52557069 | MS.gene062804:CDS |
| GTGGTGTTCTCAAATAGATT+AGG | 0.388703 | 5.2:-52554054 | MS.gene062804:CDS |
| AAGCTCAATTAGATGTTTAT+GGG | 0.389186 | 5.2:-52553399 | MS.gene062804:CDS |
| GTTGGTTGGTTACTGAAGGT+TGG | 0.402124 | 5.2:-52558025 | MS.gene062804:CDS |
| TAATAAACAATTTGTGGGAT+TGG | 0.405177 | 5.2:-52557546 | MS.gene062804:CDS |
| TGCATTGTCTAGTGCTTGTA+AGG | 0.406879 | 5.2:+52555052 | None:intergenic |
| AAGAGACGGTTCACAAGAAT+GGG | 0.412119 | 5.2:-52554574 | MS.gene062804:CDS |
| TTGTAATGACAATTGCTGAT+AGG | 0.413076 | 5.2:-52557105 | MS.gene062804:CDS |
| CCGCTCAAGTGCTTCTGGTT+GGG | 0.413588 | 5.2:-52557731 | MS.gene062804:CDS |
| TGAATTTGATTCAAGGTGAA+TGG | 0.419560 | 5.2:-52553477 | MS.gene062804:intron |
| GTTTATGGGAGAGCAACATT+TGG | 0.420478 | 5.2:-52553385 | MS.gene062804:CDS |
| CAAGAGACGGTTCACAAGAA+TGG | 0.421390 | 5.2:-52554575 | MS.gene062804:CDS |
| CAAGAAGTCTTTGTTTGGAA+TGG | 0.421693 | 5.2:+52557980 | None:intergenic |
| AAATATTTATGTGCAGAGTC+TGG | 0.425241 | 5.2:-52557778 | MS.gene062804:CDS |
| ATGGAATGTTTCAGAATCAA+TGG | 0.438369 | 5.2:+52557490 | None:intergenic |
| TTTATGGGAGAGCAACATTT+GGG | 0.445671 | 5.2:-52553384 | MS.gene062804:CDS |
| GTGTTTAATAAACAATTTGT+GGG | 0.451272 | 5.2:-52557551 | MS.gene062804:CDS |
| GAATTCTTCCCACTAGCTAA+TGG | 0.452097 | 5.2:-52554015 | MS.gene062804:CDS |
| AAACAATTTGTGGGATTGGA+TGG | 0.453779 | 5.2:-52557542 | MS.gene062804:CDS |
| GTTCGAATCAAAGCTTCAAA+TGG | 0.457248 | 5.2:-52557437 | MS.gene062804:CDS |
| GGTGTTTAATAAACAATTTG+TGG | 0.463822 | 5.2:-52557552 | MS.gene062804:CDS |
| AATGTATGCACCTTGCAGTT+AGG | 0.476338 | 5.2:+52554505 | None:intergenic |
| TTAGAATTCCAGTGGGTTGG+TGG | 0.482622 | 5.2:-52555118 | MS.gene062804:CDS |
| TTGAAAGCAGTTAACCTTGG+TGG | 0.485419 | 5.2:-52558047 | MS.gene062804:CDS |
| ATGATTTCAAGTTCATAGCT+AGG | 0.494652 | 5.2:-52555157 | MS.gene062804:CDS |
| GGTGAATTCCAAATAACAAA+TGG | 0.496193 | 5.2:-52557076 | MS.gene062804:CDS |
| GAATTTGATTCAAGGTGAAT+GGG | 0.499572 | 5.2:-52553476 | MS.gene062804:intron |
| ATTGATCTTCATGCAGCACC+TGG | 0.500988 | 5.2:-52554627 | MS.gene062804:CDS |
| ACCGCTCAAGTGCTTCTGGT+TGG | 0.501991 | 5.2:-52557732 | MS.gene062804:CDS |
| GTTCATATTTCCAGGAACAT+TGG | 0.506200 | 5.2:-52555199 | MS.gene062804:intron |
| GGTGGTTGGTTGGTTACTGA+AGG | 0.508219 | 5.2:-52558029 | MS.gene062804:CDS |
| TTCAAGTTCATAGCTAGGAA+TGG | 0.524880 | 5.2:-52555152 | MS.gene062804:CDS |
| CATCAATCACTGATCCCATA+AGG | 0.530630 | 5.2:+52553992 | None:intergenic |
| TGAAGCTTTGATTCGAACAC+GGG | 0.534321 | 5.2:+52557442 | None:intergenic |
| ACGTAGGGCCATGGTGGAGT+TGG | 0.534619 | 5.2:+52555083 | None:intergenic |
| CAGTTAGAATTCCAGTGGGT+TGG | 0.535426 | 5.2:-52555121 | MS.gene062804:CDS |
| TTCAAATGGATACTTCATAC+AGG | 0.536866 | 5.2:-52557423 | MS.gene062804:intron |
| GAAAGCTCCACAAATAATGA+AGG | 0.536911 | 5.2:-52557041 | MS.gene062804:intron |
| ACAAACACTGGAGTCTAGAA+TGG | 0.537188 | 5.2:-52553333 | MS.gene062804:CDS |
| CTAGAATGGATGATGAAGAA+TGG | 0.541024 | 5.2:-52553319 | MS.gene062804:CDS |
| CTCCAAAGATGCTGTAGTAG+TGG | 0.542320 | 5.2:+52553968 | None:intergenic |
| AGTTAACCTTGGTGGTTGGT+TGG | 0.544377 | 5.2:-52558039 | MS.gene062804:CDS |
| AGTGACTGCTGATGTATCAT+TGG | 0.547052 | 5.2:-52557161 | MS.gene062804:CDS |
| CTAGCTATCCACCAACCCAC+TGG | 0.551106 | 5.2:+52555110 | None:intergenic |
| GGAATGGCATCAAAGAGAGA+AGG | 0.557255 | 5.2:+52557996 | None:intergenic |
| AGAGGATTTGCAGGCAAAGA+CGG | 0.558168 | 5.2:-52557191 | MS.gene062804:intron |
| TTGAACAAATACTACAAGGA+TGG | 0.560573 | 5.2:-52554114 | MS.gene062804:CDS |
| AGTTCAACTGCATAAAGACT+TGG | 0.561869 | 5.2:+52554177 | None:intergenic |
| TGGGAAGAATTCTCTAGGCA+TGG | 0.562307 | 5.2:+52554026 | None:intergenic |
| AGTGTTGCACCAGGTGATAG+AGG | 0.563249 | 5.2:+52554144 | None:intergenic |
| GAACCTCCCACGTAGGGCCA+TGG | 0.568301 | 5.2:+52555074 | None:intergenic |
| TTTGCAGGCAAAGACGGAAG+AGG | 0.569718 | 5.2:-52557185 | MS.gene062804:intron |
| GCTAGTGGGAAGAATTCTCT+AGG | 0.574726 | 5.2:+52554021 | None:intergenic |
| CTAAATGAGCCTCTATCACC+TGG | 0.576368 | 5.2:-52554153 | MS.gene062804:CDS |
| CTGATTTGGTCTCCCATGTG+TGG | 0.583392 | 5.2:+52558079 | None:intergenic |
| TGTAAGGAACCTCCCACGTA+GGG | 0.583435 | 5.2:+52555068 | None:intergenic |
| AAATTGAAAGCAGTTAACCT+TGG | 0.583624 | 5.2:-52558050 | MS.gene062804:CDS |
| CCATAAGGCCATTAGCTAGT+GGG | 0.583955 | 5.2:+52554007 | None:intergenic |
| CCCATAAGGCCATTAGCTAG+TGG | 0.585533 | 5.2:+52554006 | None:intergenic |
| ATGTATCATTGGTCAACGGA+TGG | 0.585711 | 5.2:-52557150 | MS.gene062804:CDS |
| TATTTACAATAATCGCTCAT+CGG | 0.585988 | 5.2:-52553905 | MS.gene062804:CDS |
| TCAAGAACGTGAACAAACAC+TGG | 0.588352 | 5.2:-52553345 | MS.gene062804:CDS |
| CCTCCCACGTAGGGCCATGG+TGG | 0.588737 | 5.2:+52555077 | None:intergenic |
| CCCAACCAGAAGCACTTGAG+CGG | 0.589670 | 5.2:+52557731 | None:intergenic |
| AGCTTTGATTCGAACACGGG+TGG | 0.598897 | 5.2:+52557445 | None:intergenic |
| TTGAAGCTTTGATTCGAACA+CGG | 0.599020 | 5.2:+52557441 | None:intergenic |
| AACTCCACCATGGCCCTACG+TGG | 0.599934 | 5.2:-52555081 | MS.gene062804:CDS |
| TTATGTGCAGAGTCTGGAGG+AGG | 0.600028 | 5.2:-52557772 | MS.gene062804:CDS |
| CCACCATGGCCCTACGTGGG+AGG | 0.603970 | 5.2:-52555077 | MS.gene062804:CDS |
| AAACTTTCTAGTGTTGCACC+AGG | 0.604496 | 5.2:+52554135 | None:intergenic |
| GAGCATAGCTCTTCAAGAGA+CGG | 0.613874 | 5.2:-52554588 | MS.gene062804:CDS |
| AAATGCAGTTAGAATTCCAG+TGG | 0.619155 | 5.2:-52555126 | MS.gene062804:CDS |
| TTGTAAGGAACCTCCCACGT+AGG | 0.623751 | 5.2:+52555067 | None:intergenic |
| AAGCAGTTAACCTTGGTGGT+TGG | 0.646493 | 5.2:-52558043 | MS.gene062804:CDS |
| ACAATTGCTGATAGGATGCA+AGG | 0.648620 | 5.2:-52557097 | MS.gene062804:CDS |
| TCATTGACTTCCTAACTGCA+AGG | 0.656279 | 5.2:-52554515 | MS.gene062804:intron |
| AAGTTTGAACAAATACTACA+AGG | 0.657848 | 5.2:-52554118 | MS.gene062804:CDS |
| ACTCCACCATGGCCCTACGT+GGG | 0.663058 | 5.2:-52555080 | MS.gene062804:CDS |
| TATTTATGTGCAGAGTCTGG+AGG | 0.678947 | 5.2:-52557775 | MS.gene062804:CDS |
| AATGCAGTTAGAATTCCAGT+GGG | 0.681563 | 5.2:-52555125 | MS.gene062804:CDS |
| GAAGAATTCTCTAGGCATGG+AGG | 0.695443 | 5.2:+52554029 | None:intergenic |
| GCTGATGTATCATTGGTCAA+CGG | 0.707292 | 5.2:-52557154 | MS.gene062804:CDS |
| CAGTAACCAACCAACCACCA+AGG | 0.710651 | 5.2:+52558033 | None:intergenic |
| CTAGTGATCCAACTCCACCA+TGG | 0.726082 | 5.2:-52555091 | MS.gene062804:CDS |
| AGAGACGGTTCACAAGAATG+GGG | 0.726094 | 5.2:-52554573 | MS.gene062804:CDS |
| AAGGTGAATGGGTTGCTGAG+TGG | 0.733038 | 5.2:-52553465 | MS.gene062804:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATTATTACTTATATCA+TGG | + | chr5.2:52557140-52557159 | None:intergenic | 10.0% |
| !! | TAACAAAATGAAATATAATT+GGG | - | chr5.2:52555179-52555198 | MS.gene062804:CDS | 10.0% |
| !! | TATTTAATATACAAATAACA+TGG | + | chr5.2:52557163-52557182 | None:intergenic | 10.0% |
| !! | TTAACAAAATGAAATATAAT+TGG | - | chr5.2:52555178-52555197 | MS.gene062804:CDS | 10.0% |
| !! | TTATTCAATAATTATTATTG+AGG | + | chr5.2:52555990-52556009 | None:intergenic | 10.0% |
| !!! | ATATACTTTTTTTTTTTTGA+AGG | + | chr5.2:52555736-52555755 | None:intergenic | 10.0% |
| !!! | TATACTTTTTTTTTTTTGAA+GGG | + | chr5.2:52555735-52555754 | None:intergenic | 10.0% |
| !! | AAAACGATTTATATTAAGAA+TGG | + | chr5.2:52557589-52557608 | None:intergenic | 15.0% |
| !! | AAACACGAAAAAAAATAATT+TGG | + | chr5.2:52556148-52556167 | None:intergenic | 15.0% |
| !! | AAAGTTATTACTATAATTGA+TGG | - | chr5.2:52554409-52554428 | MS.gene062804:intron | 15.0% |
| !! | AAATACACAAAATAAATATG+AGG | + | chr5.2:52553789-52553808 | None:intergenic | 15.0% |
| !! | AACACGAAAAAAAATAATTT+GGG | + | chr5.2:52556147-52556166 | None:intergenic | 15.0% |
| !! | GTTAGAATGATATAAAATTT+AGG | + | chr5.2:52554851-52554870 | None:intergenic | 15.0% |
| !! | TAAAAATATAGTATATACTG+CGG | + | chr5.2:52554017-52554036 | None:intergenic | 15.0% |
| !! | TATTATTGTACTATAAAAAG+AGG | - | chr5.2:52554181-52554200 | MS.gene062804:CDS | 15.0% |
| !!! | AAATTTTATATCATTCTAAC+TGG | - | chr5.2:52554851-52554870 | MS.gene062804:intron | 15.0% |
| !!! | AACAACAATGATTTTTTTTT+TGG | - | chr5.2:52555233-52555252 | MS.gene062804:intron | 15.0% |
| !!! | AATCTTAATAATTGATAATG+TGG | + | chr5.2:52555469-52555488 | None:intergenic | 15.0% |
| !!! | ACAACAATGATTTTTTTTTT+GGG | - | chr5.2:52555234-52555253 | MS.gene062804:intron | 15.0% |
| !!! | ACAATTTTGATTTTTATCAT+CGG | + | chr5.2:52554762-52554781 | None:intergenic | 15.0% |
| !!! | GAGAAGTTAATAATAATTTT+AGG | - | chr5.2:52554474-52554493 | MS.gene062804:intron | 15.0% |
| !!! | TGTTAGAATATTTTTGTTTT+TGG | - | chr5.2:52555041-52555060 | MS.gene062804:CDS | 15.0% |
| !!! | TTTCTATATTTTTAATAGGA+TGG | - | chr5.2:52553569-52553588 | MS.gene062804:intron | 15.0% |
| !!! | TTTCTTTATAATTTTTTGAG+AGG | - | chr5.2:52554150-52554169 | MS.gene062804:CDS | 15.0% |
| !! | AAAAAACAGAGAAAATAATG+CGG | - | chr5.2:52555531-52555550 | MS.gene062804:intron | 20.0% |
| !! | AAAAATGACTACAAAAGATT+TGG | - | chr5.2:52557980-52557999 | MS.gene062804:CDS | 20.0% |
| !! | AAAATGTTAGTGACAAAAAA+TGG | - | chr5.2:52556432-52556451 | MS.gene062804:intron | 20.0% |
| !! | ATAAAAAAGACTGTCTTAAT+TGG | + | chr5.2:52555814-52555833 | None:intergenic | 20.0% |
| !! | ATCATATGATGATCATATAA+TGG | + | chr5.2:52554886-52554905 | None:intergenic | 20.0% |
| !! | ATGAAATATAATTGGGAAAA+AGG | - | chr5.2:52555186-52555205 | MS.gene062804:CDS | 20.0% |
| !! | ATTGTCATTACAAAAATTGT+TGG | + | chr5.2:52554292-52554311 | None:intergenic | 20.0% |
| !! | ATTGTGATTTACAGTAAAAA+CGG | + | chr5.2:52556672-52556691 | None:intergenic | 20.0% |
| !! | CATATTAAGGTAATCTTATT+GGG | - | chr5.2:52555855-52555874 | MS.gene062804:intron | 20.0% |
| !! | CTTAATAAGTGTATAAAAAG+TGG | + | chr5.2:52555684-52555703 | None:intergenic | 20.0% |
| !! | GTGTTTAATAAACAATTTGT+GGG | - | chr5.2:52553853-52553872 | MS.gene062804:intron | 20.0% |
| !! | TCATATGATGATCATATAAT+GGG | + | chr5.2:52554885-52554904 | None:intergenic | 20.0% |
| !! | TGAAATATAATTGGGAAAAA+GGG | - | chr5.2:52555187-52555206 | MS.gene062804:CDS | 20.0% |
| !! | TTCAATTTAAACTTCTGATT+TGG | + | chr5.2:52553342-52553361 | None:intergenic | 20.0% |
| !! | TTGTCATTACAAAAATTGTT+GGG | + | chr5.2:52554291-52554310 | None:intergenic | 20.0% |
| !! | TTTAAATGTCACTGATAATA+GGG | - | chr5.2:52556711-52556730 | MS.gene062804:intron | 20.0% |
| !!! | AATAATTTGGGTTTAATTCT+TGG | + | chr5.2:52556135-52556154 | None:intergenic | 20.0% |
| !!! | ACAGTCTTTTTTATATTAGT+TGG | - | chr5.2:52555820-52555839 | MS.gene062804:intron | 20.0% |
| !!! | ATATCGTTTTTCTTTTATAC+TGG | + | chr5.2:52557786-52557805 | None:intergenic | 20.0% |
| !!! | ATATTTTTAATAGGATGGAA+CGG | - | chr5.2:52553574-52553593 | MS.gene062804:intron | 20.0% |
| !!! | ATGAAGTGTTAATATTTCAT+TGG | + | chr5.2:52554910-52554929 | None:intergenic | 20.0% |
| !!! | ATTTTTGTTTACATTTAGAG+TGG | + | chr5.2:52554589-52554608 | None:intergenic | 20.0% |
| !!! | ATTTTTTTTCGTGTTTTCTA+TGG | - | chr5.2:52556152-52556171 | MS.gene062804:intron | 20.0% |
| !!! | CAAATATTGAAATTTTGTGT+AGG | + | chr5.2:52554086-52554105 | None:intergenic | 20.0% |
| !!! | CACTTTTTATACACTTATTA+AGG | - | chr5.2:52555682-52555701 | MS.gene062804:intron | 20.0% |
| !!! | CAGTCTTTTTTATATTAGTT+GGG | - | chr5.2:52555821-52555840 | MS.gene062804:intron | 20.0% |
| !!! | CATTAAACATTTTTGTTTGA+AGG | - | chr5.2:52554792-52554811 | MS.gene062804:intron | 20.0% |
| !!! | GTTAATAATAATTTTAGGCT+TGG | - | chr5.2:52554479-52554498 | MS.gene062804:intron | 20.0% |
| !!! | TATCGTTTTTCTTTTATACT+GGG | + | chr5.2:52557785-52557804 | None:intergenic | 20.0% |
| !!! | TATGTATAAGATTGATGATA+TGG | + | chr5.2:52555344-52555363 | None:intergenic | 20.0% |
| !!! | TCATGGTCAATTATTTTTTA+AGG | + | chr5.2:52557722-52557741 | None:intergenic | 20.0% |
| !!! | TTTTTATCAAGTAGTTTAGT+GGG | + | chr5.2:52554541-52554560 | None:intergenic | 20.0% |
| !!! | TTTTTTATATTAGTTGGGTA+GGG | - | chr5.2:52555826-52555845 | MS.gene062804:intron | 20.0% |
| !!! | TTTTTTATCAAGTAGTTTAG+TGG | + | chr5.2:52554542-52554561 | None:intergenic | 20.0% |
| ! | AAAGCTCAATTAGATGTTTA+TGG | - | chr5.2:52558004-52558023 | MS.gene062804:CDS | 25.0% |
| ! | AACAATGTGAATTTGATTCA+AGG | - | chr5.2:52557920-52557939 | MS.gene062804:intron | 25.0% |
| ! | AACACAAACGCAAATATATA+CGG | + | chr5.2:52556483-52556502 | None:intergenic | 25.0% |
| ! | AAGCTCAATTAGATGTTTAT+GGG | - | chr5.2:52558005-52558024 | MS.gene062804:CDS | 25.0% |
| ! | AATGATACCTTCATTATTTG+TGG | + | chr5.2:52554373-52554392 | None:intergenic | 25.0% |
| ! | ACAAAGAAACTTTCAGATTT+AGG | - | chr5.2:52553830-52553849 | MS.gene062804:intron | 25.0% |
| ! | ACATAATATATGTAAGAGTC+AGG | + | chr5.2:52555109-52555128 | None:intergenic | 25.0% |
| ! | ACTATAAAAAGAGGAATTCA+TGG | - | chr5.2:52554190-52554209 | MS.gene062804:CDS | 25.0% |
| ! | ATAACCAAATGCAATTGATA+TGG | - | chr5.2:52556602-52556621 | MS.gene062804:intron | 25.0% |
| ! | CAAAGAAACTTTCAGATTTA+GGG | - | chr5.2:52553831-52553850 | MS.gene062804:intron | 25.0% |
| ! | CATAACTAAAATACTGAATG+AGG | - | chr5.2:52554728-52554747 | MS.gene062804:intron | 25.0% |
| ! | CATAATATATGTAAGAGTCA+GGG | + | chr5.2:52555108-52555127 | None:intergenic | 25.0% |
| ! | CATCAACTAACAAAAAAAGT+TGG | + | chr5.2:52555894-52555913 | None:intergenic | 25.0% |
| ! | CCCTTCTATATAAATAAGAT+CGG | - | chr5.2:52554043-52554062 | MS.gene062804:CDS | 25.0% |
| ! | CTTTAAATGTCACTGATAAT+AGG | - | chr5.2:52556710-52556729 | MS.gene062804:intron | 25.0% |
| ! | GCATATTAAGGTAATCTTAT+TGG | - | chr5.2:52555854-52555873 | MS.gene062804:intron | 25.0% |
| ! | GGTGTTTAATAAACAATTTG+TGG | - | chr5.2:52553852-52553871 | MS.gene062804:intron | 25.0% |
| ! | TAATAAACAATTTGTGGGAT+TGG | - | chr5.2:52553858-52553877 | MS.gene062804:intron | 25.0% |
| ! | TAATGTCATATTATGAAGCA+CGG | + | chr5.2:52557103-52557122 | None:intergenic | 25.0% |
| ! | TATACGGGATATTATTTAGA+AGG | + | chr5.2:52556467-52556486 | None:intergenic | 25.0% |
| ! | TATAGATGTGAAGTTATACT+TGG | + | chr5.2:52554651-52554670 | None:intergenic | 25.0% |
| ! | TATTTACAATAATCGCTCAT+CGG | - | chr5.2:52557499-52557518 | MS.gene062804:CDS | 25.0% |
| ! | TCCAAATAACAAATGGTTAT+GGG | - | chr5.2:52554335-52554354 | MS.gene062804:intron | 25.0% |
| ! | TTAAATATCCAGTAAGTCAA+TGG | + | chr5.2:52555929-52555948 | None:intergenic | 25.0% |
| ! | TTAGACGAAATCAATGTATT+TGG | + | chr5.2:52556528-52556547 | None:intergenic | 25.0% |
| ! | TTCCAAATAACAAATGGTTA+TGG | - | chr5.2:52554334-52554353 | MS.gene062804:intron | 25.0% |
| ! | TTCTTTAAATAGTGTCACAA+GGG | - | chr5.2:52554107-52554126 | MS.gene062804:CDS | 25.0% |
| ! | TTGTAAATGTAAACGTTTCA+CGG | - | chr5.2:52556181-52556200 | MS.gene062804:intron | 25.0% |
| ! | TTTCTTTAAATAGTGTCACA+AGG | - | chr5.2:52554106-52554125 | MS.gene062804:CDS | 25.0% |
| !! | AATTTTGTTACAACCTCAAA+TGG | - | chr5.2:52557527-52557546 | MS.gene062804:CDS | 25.0% |
| !! | CCGATCTTATTTATATAGAA+GGG | + | chr5.2:52554046-52554065 | None:intergenic | 25.0% |
| !! | GGTTATATTTTCTCTCAAAA+AGG | + | chr5.2:52557764-52557783 | None:intergenic | 25.0% |
| !! | TCCGATCTTATTTATATAGA+AGG | + | chr5.2:52554047-52554066 | None:intergenic | 25.0% |
| !!! | AAGAATCTCATTTTAGTTTG+TGG | + | chr5.2:52556398-52556417 | None:intergenic | 25.0% |
| !!! | CAACTTTTTTTGTTAGTTGA+TGG | - | chr5.2:52555892-52555911 | MS.gene062804:intron | 25.0% |
| !!! | CTTTTTTATATTAGTTGGGT+AGG | - | chr5.2:52555825-52555844 | MS.gene062804:intron | 25.0% |
| !!! | TATTTTTAATAGGATGGAAC+GGG | - | chr5.2:52553575-52553594 | MS.gene062804:intron | 25.0% |
| !!! | TGTCACTTTCTTTAACAATA+TGG | + | chr5.2:52553936-52553955 | None:intergenic | 25.0% |
| !!! | TTCTATTTTTTATGTGTCGT+AGG | - | chr5.2:52557192-52557211 | MS.gene062804:intron | 25.0% |
| !!! | TTTTTTTTTGAAGGGAGAAA+GGG | + | chr5.2:52555727-52555746 | None:intergenic | 25.0% |
| !!! | TTTTTTTTTTGAAGGGAGAA+AGG | + | chr5.2:52555728-52555747 | None:intergenic | 25.0% |
| AAAAATAAGAGGACCATTTG+AGG | + | chr5.2:52557543-52557562 | None:intergenic | 30.0% | |
| AAAGGGAAAATATACTTGGT+GGG | + | chr5.2:52555710-52555729 | None:intergenic | 30.0% | |
| AAATATAGTATATACTGCGG+AGG | + | chr5.2:52554014-52554033 | None:intergenic | 30.0% | |
| AAATATTTATGTGCAGAGTC+TGG | - | chr5.2:52553626-52553645 | MS.gene062804:intron | 30.0% | |
| AAATTGAAAGCAGTTAACCT+TGG | - | chr5.2:52553354-52553373 | MS.gene062804:CDS | 30.0% | |
| AACATTTGGGTATGCATATT+GGG | - | chr5.2:52558033-52558052 | MS.gene062804:CDS | 30.0% | |
| AAGTCAAAGAATCAAACTCA+TGG | + | chr5.2:52557739-52557758 | None:intergenic | 30.0% | |
| ACAACCATATCAATTGCATT+TGG | + | chr5.2:52556609-52556628 | None:intergenic | 30.0% | |
| ACACAAACGCAAATATATAC+GGG | + | chr5.2:52556482-52556501 | None:intergenic | 30.0% | |
| ATGGAATGTTTCAGAATCAA+TGG | + | chr5.2:52553917-52553936 | None:intergenic | 30.0% | |
| CAACTAACAAAAAAAGTTGG+TGG | + | chr5.2:52555891-52555910 | None:intergenic | 30.0% | |
| CTATGAGACTAATCTTCAAA+TGG | + | chr5.2:52557815-52557834 | None:intergenic | 30.0% | |
| GAATAAGTGCTTGAGAATAT+AGG | + | chr5.2:52555283-52555302 | None:intergenic | 30.0% | |
| GAATTTGATTCAAGGTGAAT+GGG | - | chr5.2:52557928-52557947 | MS.gene062804:intron | 30.0% | |
| GCTAGTTGCGATAATAAAAA+GGG | + | chr5.2:52555762-52555781 | None:intergenic | 30.0% | |
| GGTGAATTCCAAATAACAAA+TGG | - | chr5.2:52554328-52554347 | MS.gene062804:intron | 30.0% | |
| TAAACTGTAGAGATACTTCT+GGG | + | chr5.2:52556080-52556099 | None:intergenic | 30.0% | |
| TACATATAAGCAATGAAGCA+CGG | - | chr5.2:52556921-52556940 | MS.gene062804:intron | 30.0% | |
| TACTAACCGACAAAAATAAG+AGG | + | chr5.2:52557554-52557573 | None:intergenic | 30.0% | |
| TAGTCTCATAGAAAACCTTA+GGG | - | chr5.2:52557824-52557843 | MS.gene062804:intron | 30.0% | |
| TCTCAAATTATTATCCGTGT+CGG | - | chr5.2:52557036-52557055 | MS.gene062804:intron | 30.0% | |
| TGAATTTGATTCAAGGTGAA+TGG | - | chr5.2:52557927-52557946 | MS.gene062804:intron | 30.0% | |
| TGATGTATCTGCAGAAAATA+TGG | - | chr5.2:52556741-52556760 | MS.gene062804:intron | 30.0% | |
| TGCTAGTTGCGATAATAAAA+AGG | + | chr5.2:52555763-52555782 | None:intergenic | 30.0% | |
| TGTAAATGTAAACGTTTCAC+GGG | - | chr5.2:52556182-52556201 | MS.gene062804:intron | 30.0% | |
| TGTGTATTTGTTTGTAGTTG+TGG | - | chr5.2:52553800-52553819 | MS.gene062804:intron | 30.0% | |
| TTAATCTTGACCATTGTCAT+TGG | - | chr5.2:52555600-52555619 | MS.gene062804:intron | 30.0% | |
| TTAGTCTCATAGAAAACCTT+AGG | - | chr5.2:52557823-52557842 | MS.gene062804:intron | 30.0% | |
| TTCAAATGGATACTTCATAC+AGG | - | chr5.2:52553981-52554000 | MS.gene062804:CDS | 30.0% | |
| TTGGAAATGACACCATAAAA+TGG | + | chr5.2:52557617-52557636 | None:intergenic | 30.0% | |
| TTGTAATGACAATTGCTGAT+AGG | - | chr5.2:52554299-52554318 | MS.gene062804:intron | 30.0% | |
| TTTCAAATTCTAAGCACAAG+TGG | - | chr5.2:52554440-52554459 | MS.gene062804:intron | 30.0% | |
| ! | ACTAGACAATGCATTTTTGT+GGG | - | chr5.2:52556362-52556381 | MS.gene062804:intron | 30.0% |
| ! | TCGTTTTACTCACCATTTTA+TGG | - | chr5.2:52557602-52557621 | MS.gene062804:intron | 30.0% |
| ! | TGGTGATGTAAATGATTCAA+AGG | + | chr5.2:52556508-52556527 | None:intergenic | 30.0% |
| !! | ATGATTTCAAGTTCATAGCT+AGG | - | chr5.2:52556247-52556266 | MS.gene062804:intron | 30.0% |
| !! | TTTAGAGTGGTCTTTTAACT+AGG | + | chr5.2:52554576-52554595 | None:intergenic | 30.0% |
| !!! | AATGGTCCTCTTATTTTTGT+CGG | - | chr5.2:52557545-52557564 | MS.gene062804:CDS | 30.0% |
| AAAAAGAGGAATTCATGGAG+AGG | - | chr5.2:52554195-52554214 | MS.gene062804:intron | 35.0% | |
| AAACAATTTGTGGGATTGGA+TGG | - | chr5.2:52553862-52553881 | MS.gene062804:CDS | 35.0% | |
| AAATGCAGTTAGAATTCCAG+TGG | - | chr5.2:52556278-52556297 | MS.gene062804:intron | 35.0% | |
| AATAGCCTAGTGGTTAAAAC+TGG | - | chr5.2:52555067-52555086 | MS.gene062804:CDS | 35.0% | |
| AATGCAGTTAGAATTCCAGT+GGG | - | chr5.2:52556279-52556298 | MS.gene062804:intron | 35.0% | |
| ACCAACTGAGTTAAGTTCAT+GGG | - | chr5.2:52555138-52555157 | MS.gene062804:CDS | 35.0% | |
| AGGTAATCTTATTGGGACAA+TGG | - | chr5.2:52555862-52555881 | MS.gene062804:intron | 35.0% | |
| AGTTCAACTGCATAAAGACT+TGG | + | chr5.2:52557230-52557249 | None:intergenic | 35.0% | |
| ATTGGGAAAAAGGGAATATG+TGG | - | chr5.2:52555196-52555215 | MS.gene062804:intron | 35.0% | |
| CAACATTTGGGTATGCATAT+TGG | - | chr5.2:52558032-52558051 | MS.gene062804:CDS | 35.0% | |
| CATTCCAAACAAAGACTTCT+TGG | - | chr5.2:52553425-52553444 | MS.gene062804:CDS | 35.0% | |
| CTAAACTGTAGAGATACTTC+TGG | + | chr5.2:52556081-52556100 | None:intergenic | 35.0% | |
| CTAACCAAGAAGTCTTTGTT+TGG | + | chr5.2:52553432-52553451 | None:intergenic | 35.0% | |
| CTAGAATGGATGATGAAGAA+TGG | - | chr5.2:52558085-52558104 | MS.gene062804:CDS | 35.0% | |
| GAAAGCTCCACAAATAATGA+AGG | - | chr5.2:52554363-52554382 | MS.gene062804:intron | 35.0% | |
| GAAAGGGAAAATATACTTGG+TGG | + | chr5.2:52555711-52555730 | None:intergenic | 35.0% | |
| GCACTCTTCTATTGTATTTG+TGG | - | chr5.2:52557331-52557350 | MS.gene062804:intron | 35.0% | |
| GGAGAAAGGGAAAATATACT+TGG | + | chr5.2:52555714-52555733 | None:intergenic | 35.0% | |
| GTAAATGTAAACGTTTCACG+GGG | - | chr5.2:52556183-52556202 | MS.gene062804:intron | 35.0% | |
| GTGGTGTTCTCAAATAGATT+AGG | - | chr5.2:52557350-52557369 | MS.gene062804:intron | 35.0% | |
| GTTCATATTTCCAGGAACAT+TGG | - | chr5.2:52556205-52556224 | MS.gene062804:intron | 35.0% | |
| GTTCGAATCAAAGCTTCAAA+TGG | - | chr5.2:52553967-52553986 | MS.gene062804:CDS | 35.0% | |
| TACCAACTGAGTTAAGTTCA+TGG | - | chr5.2:52555137-52555156 | MS.gene062804:CDS | 35.0% | |
| TGCAATTGATATGGTTGTCA+TGG | - | chr5.2:52556611-52556630 | MS.gene062804:intron | 35.0% | |
| TGGAACATCTCTATTCTGAA+AGG | + | chr5.2:52556950-52556969 | None:intergenic | 35.0% | |
| TTAATCTTGACCATCGTCAT+TGG | - | chr5.2:52555494-52555513 | MS.gene062804:intron | 35.0% | |
| TTTATGGGAGAGCAACATTT+GGG | - | chr5.2:52558020-52558039 | MS.gene062804:CDS | 35.0% | |
| ! | CAAGAAGTCTTTGTTTGGAA+TGG | + | chr5.2:52553427-52553446 | None:intergenic | 35.0% |
| ! | CACTAGACAATGCATTTTTG+TGG | - | chr5.2:52556361-52556380 | MS.gene062804:intron | 35.0% |
| ! | TTCAAGTTCATAGCTAGGAA+TGG | - | chr5.2:52556252-52556271 | MS.gene062804:intron | 35.0% |
| ! | TTGAAGCTTTGATTCGAACA+CGG | + | chr5.2:52553966-52553985 | None:intergenic | 35.0% |
| ! | TTTTGCTTTCTACCACACAT+GGG | - | chr5.2:52553313-52553332 | MS.gene062804:CDS | 35.0% |
| !! | ACATCTATACAAGAAGTGCT+AGG | - | chr5.2:52554662-52554681 | MS.gene062804:intron | 35.0% |
| !! | GCCCATAACCATTTGTTATT+TGG | + | chr5.2:52554339-52554358 | None:intergenic | 35.0% |
| !! | TTTTTGGTCAAATAGCCTAG+TGG | - | chr5.2:52555057-52555076 | MS.gene062804:CDS | 35.0% |
| AAGAGACGGTTCACAAGAAT+GGG | - | chr5.2:52556830-52556849 | MS.gene062804:intron | 40.0% | |
| AATGTATGCACCTTGCAGTT+AGG | + | chr5.2:52556902-52556921 | None:intergenic | 40.0% | |
| AATTCATGGAGAGGATTTGC+AGG | - | chr5.2:52554204-52554223 | MS.gene062804:intron | 40.0% | |
| ACAAACACTGGAGTCTAGAA+TGG | - | chr5.2:52558071-52558090 | MS.gene062804:CDS | 40.0% | |
| ACAATTGCTGATAGGATGCA+AGG | - | chr5.2:52554307-52554326 | MS.gene062804:intron | 40.0% | |
| AGTGACTGCTGATGTATCAT+TGG | - | chr5.2:52554243-52554262 | MS.gene062804:intron | 40.0% | |
| ATATTAGTTGGGTAGGGCAA+TGG | - | chr5.2:52555832-52555851 | MS.gene062804:intron | 40.0% | |
| ATGTATCATTGGTCAACGGA+TGG | - | chr5.2:52554254-52554273 | MS.gene062804:intron | 40.0% | |
| CATCAATCACTGATCCCATA+AGG | + | chr5.2:52557415-52557434 | None:intergenic | 40.0% | |
| CTTCACGTTACCAATGACAA+TGG | + | chr5.2:52555613-52555632 | None:intergenic | 40.0% | |
| GAATTCTTCCCACTAGCTAA+TGG | - | chr5.2:52557389-52557408 | MS.gene062804:intron | 40.0% | |
| GCTGATGTATCATTGGTCAA+CGG | - | chr5.2:52554250-52554269 | MS.gene062804:intron | 40.0% | |
| GTTTATGGGAGAGCAACATT+TGG | - | chr5.2:52558019-52558038 | MS.gene062804:CDS | 40.0% | |
| TAAAACTGCTCCAATGTTCC+TGG | + | chr5.2:52556218-52556237 | None:intergenic | 40.0% | |
| TAGTGGTTAAAACTGGTGTG+CGG | - | chr5.2:52555074-52555093 | MS.gene062804:CDS | 40.0% | |
| TATAGATGTCGTGTCAGTGT+TGG | + | chr5.2:52556994-52557013 | None:intergenic | 40.0% | |
| TATTTATGTGCAGAGTCTGG+AGG | - | chr5.2:52553629-52553648 | MS.gene062804:intron | 40.0% | |
| TCAAGAACGTGAACAAACAC+TGG | - | chr5.2:52558059-52558078 | MS.gene062804:CDS | 40.0% | |
| TCCCATGAACTTAACTCAGT+TGG | + | chr5.2:52555142-52555161 | None:intergenic | 40.0% | |
| TGCATTGTCTAGTGCTTGTA+AGG | + | chr5.2:52556355-52556374 | None:intergenic | 40.0% | |
| TTGAAAGCAGTTAACCTTGG+TGG | - | chr5.2:52553357-52553376 | MS.gene062804:CDS | 40.0% | |
| TTTATCCAACATGCACCCTA+AGG | + | chr5.2:52557842-52557861 | None:intergenic | 40.0% | |
| ! | AAACTTTCTAGTGTTGCACC+AGG | + | chr5.2:52557272-52557291 | None:intergenic | 40.0% |
| ! | GAGATACTTCTGGGAAACTA+TGG | + | chr5.2:52556071-52556090 | None:intergenic | 40.0% |
| ! | GTTTTGCTTTCTACCACACA+TGG | - | chr5.2:52553312-52553331 | MS.gene062804:CDS | 40.0% |
| ! | TGAAGCTTTGATTCGAACAC+GGG | + | chr5.2:52553965-52553984 | None:intergenic | 40.0% |
| !! | CTATACAAGAAGTGCTAGGT+AGG | - | chr5.2:52554666-52554685 | MS.gene062804:intron | 40.0% |
| !! | TCATTGACTTCCTAACTGCA+AGG | - | chr5.2:52556889-52556908 | MS.gene062804:intron | 40.0% |
| ACGGATACAGACATAGACAC+AGG | + | chr5.2:52557084-52557103 | None:intergenic | 45.0% | |
| AGAGACGGTTCACAAGAATG+GGG | - | chr5.2:52556831-52556850 | MS.gene062804:intron | 45.0% | |
| AGAGGATTTGCAGGCAAAGA+CGG | - | chr5.2:52554213-52554232 | MS.gene062804:intron | 45.0% | |
| AGTGGTTAAAACTGGTGTGC+GGG | - | chr5.2:52555075-52555094 | MS.gene062804:CDS | 45.0% | |
| ATTGATCTTCATGCAGCACC+TGG | - | chr5.2:52556777-52556796 | MS.gene062804:intron | 45.0% | |
| CAAGAGACGGTTCACAAGAA+TGG | - | chr5.2:52556829-52556848 | MS.gene062804:intron | 45.0% | |
| CAGTTAGAATTCCAGTGGGT+TGG | - | chr5.2:52556283-52556302 | MS.gene062804:intron | 45.0% | |
| CCAGTAAGTCAATGGATGAC+TGG | + | chr5.2:52555921-52555940 | None:intergenic | 45.0% | |
| CCATAAGGCCATTAGCTAGT+GGG | + | chr5.2:52557400-52557419 | None:intergenic | 45.0% | |
| CTAAATGAGCCTCTATCACC+TGG | - | chr5.2:52557251-52557270 | MS.gene062804:intron | 45.0% | |
| CTCCAAAGATGCTGTAGTAG+TGG | + | chr5.2:52557439-52557458 | None:intergenic | 45.0% | |
| CTTCACGTTACCAATGACGA+TGG | + | chr5.2:52555507-52555526 | None:intergenic | 45.0% | |
| GAAAACCTTAGGGTGCATGT+TGG | - | chr5.2:52557834-52557853 | MS.gene062804:intron | 45.0% | |
| GAAGAATTCTCTAGGCATGG+AGG | + | chr5.2:52557378-52557397 | None:intergenic | 45.0% | |
| GAGCATAGCTCTTCAAGAGA+CGG | - | chr5.2:52556816-52556835 | MS.gene062804:intron | 45.0% | |
| GCTAGTGGGAAGAATTCTCT+AGG | + | chr5.2:52557386-52557405 | None:intergenic | 45.0% | |
| GGAATGGCATCAAAGAGAGA+AGG | + | chr5.2:52553411-52553430 | None:intergenic | 45.0% | |
| GGTAGGGCAATGGCATATTA+AGG | - | chr5.2:52555842-52555861 | MS.gene062804:intron | 45.0% | |
| GTCCACTACTACAGCATCTT+TGG | - | chr5.2:52557434-52557453 | MS.gene062804:CDS | 45.0% | |
| GTTGCTGAGTGGCAAGTTAA+AGG | - | chr5.2:52557950-52557969 | MS.gene062804:intron | 45.0% | |
| TGGGAAGAATTCTCTAGGCA+TGG | + | chr5.2:52557381-52557400 | None:intergenic | 45.0% | |
| TTCACGGGGTTCATATTTCC+AGG | - | chr5.2:52556197-52556216 | MS.gene062804:intron | 45.0% | |
| ! | AAGCAGTTAACCTTGGTGGT+TGG | - | chr5.2:52553361-52553380 | MS.gene062804:CDS | 45.0% |
| ! | AGTTAACCTTGGTGGTTGGT+TGG | - | chr5.2:52553365-52553384 | MS.gene062804:CDS | 45.0% |
| ! | GTTGGTTGGTTACTGAAGGT+TGG | - | chr5.2:52553379-52553398 | MS.gene062804:CDS | 45.0% |
| !! | CCACTAGCTAATGGCCTTAT+GGG | - | chr5.2:52557398-52557417 | MS.gene062804:intron | 45.0% |
| !! | CCAGTCATCCATTGACTTAC+TGG | - | chr5.2:52555918-52555937 | MS.gene062804:intron | 45.0% |
| !! | GCACACCAGTTTTAACCACT+AGG | + | chr5.2:52555075-52555094 | None:intergenic | 45.0% |
| !! | TCATAGCCATTTTGAGAGCC+AGG | + | chr5.2:52556798-52556817 | None:intergenic | 45.0% |
| !! | TTAGAATTCCAGTGGGTTGG+TGG | - | chr5.2:52556286-52556305 | MS.gene062804:intron | 45.0% |
| !!! | AATTTTTCTATATTTTTAAT+AGG | - | chr5.2:52553565-52553584 | MS.gene062804:intron | 5.0% |
| !!! | TTCATATAAATATTTTTATT+TGG | + | chr5.2:52557636-52557655 | None:intergenic | 5.0% |
| ACCACCATCACGTGTGAATG+AGG | + | chr5.2:52555791-52555810 | None:intergenic | 50.0% | |
| AGTGTTGCACCAGGTGATAG+AGG | + | chr5.2:52557263-52557282 | None:intergenic | 50.0% | |
| CAGTAACCAACCAACCACCA+AGG | + | chr5.2:52553374-52553393 | None:intergenic | 50.0% | |
| CCCATAAGGCCATTAGCTAG+TGG | + | chr5.2:52557401-52557420 | None:intergenic | 50.0% | |
| CTAGTGATCCAACTCCACCA+TGG | - | chr5.2:52556313-52556332 | MS.gene062804:intron | 50.0% | |
| GTCTCCTCATTCACACGTGA+TGG | - | chr5.2:52555784-52555803 | MS.gene062804:intron | 50.0% | |
| TCCTCATTCACACGTGATGG+TGG | - | chr5.2:52555787-52555806 | MS.gene062804:intron | 50.0% | |
| TGTAAGGAACCTCCCACGTA+GGG | + | chr5.2:52556339-52556358 | None:intergenic | 50.0% | |
| TTATGTGCAGAGTCTGGAGG+AGG | - | chr5.2:52553632-52553651 | MS.gene062804:intron | 50.0% | |
| TTGTAAGGAACCTCCCACGT+AGG | + | chr5.2:52556340-52556359 | None:intergenic | 50.0% | |
| TTTGCAGGCAAAGACGGAAG+AGG | - | chr5.2:52554219-52554238 | MS.gene062804:intron | 50.0% | |
| ! | AGCTTTGATTCGAACACGGG+TGG | + | chr5.2:52553962-52553981 | None:intergenic | 50.0% |
| ! | CCCACTAGCTAATGGCCTTA+TGG | - | chr5.2:52557397-52557416 | MS.gene062804:intron | 50.0% |
| ! | GGTGGTTGGTTGGTTACTGA+AGG | - | chr5.2:52553375-52553394 | MS.gene062804:CDS | 50.0% |
| !! | AAGGTGAATGGGTTGCTGAG+TGG | - | chr5.2:52557939-52557958 | MS.gene062804:intron | 50.0% |
| !! | CTGATTTGGTCTCCCATGTG+TGG | + | chr5.2:52553328-52553347 | None:intergenic | 50.0% |
| ACCGCTCAAGTGCTTCTGGT+TGG | - | chr5.2:52553672-52553691 | MS.gene062804:intron | 55.0% | |
| CTAGCTATCCACCAACCCAC+TGG | + | chr5.2:52556297-52556316 | None:intergenic | 55.0% | |
| GCAAACCGCTCAAGTGCTTC+TGG | - | chr5.2:52553668-52553687 | MS.gene062804:intron | 55.0% | |
| TTCCAGTGTCAGACACGCGT+CGG | - | chr5.2:52556965-52556984 | MS.gene062804:intron | 55.0% | |
| ! | CCGCTCAAGTGCTTCTGGTT+GGG | - | chr5.2:52553673-52553692 | MS.gene062804:intron | 55.0% |
| ! | GCAGCACCTGGCTCTCAAAA+TGG | - | chr5.2:52556789-52556808 | MS.gene062804:intron | 55.0% |
| !! | CCCAACCAGAAGCACTTGAG+CGG | + | chr5.2:52553676-52553695 | None:intergenic | 55.0% |
| AACTCCACCATGGCCCTACG+TGG | - | chr5.2:52556323-52556342 | MS.gene062804:intron | 60.0% | |
| ACTCCACCATGGCCCTACGT+GGG | - | chr5.2:52556324-52556343 | MS.gene062804:intron | 60.0% | |
| CTGACATCGACACGCCGACA+CGG | + | chr5.2:52557053-52557072 | None:intergenic | 60.0% | |
| ! | ACGTAGGGCCATGGTGGAGT+TGG | + | chr5.2:52556324-52556343 | None:intergenic | 60.0% |
| CACCGACGCGTGTCTGACAC+TGG | + | chr5.2:52556970-52556989 | None:intergenic | 65.0% | |
| GAACCTCCCACGTAGGGCCA+TGG | + | chr5.2:52556333-52556352 | None:intergenic | 65.0% | |
| CCACCATGGCCCTACGTGGG+AGG | - | chr5.2:52556327-52556346 | MS.gene062804:intron | 70.0% | |
| CCTCCCACGTAGGGCCATGG+TGG | + | chr5.2:52556330-52556349 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 52553303 | 52558123 | 52553303 | ID=MS.gene062804 |
| chr5.2 | mRNA | 52553303 | 52558123 | 52553303 | ID=MS.gene062804.t1;Parent=MS.gene062804 |
| chr5.2 | exon | 52557980 | 52558123 | 52557980 | ID=MS.gene062804.t1.exon1;Parent=MS.gene062804.t1 |
| chr5.2 | CDS | 52557980 | 52558123 | 52557980 | ID=cds.MS.gene062804.t1;Parent=MS.gene062804.t1 |
| chr5.2 | exon | 52557720 | 52557839 | 52557720 | ID=MS.gene062804.t1.exon2;Parent=MS.gene062804.t1 |
| chr5.2 | CDS | 52557720 | 52557839 | 52557720 | ID=cds.MS.gene062804.t1;Parent=MS.gene062804.t1 |
| chr5.2 | exon | 52557424 | 52557609 | 52557424 | ID=MS.gene062804.t1.exon3;Parent=MS.gene062804.t1 |
| chr5.2 | CDS | 52557424 | 52557609 | 52557424 | ID=cds.MS.gene062804.t1;Parent=MS.gene062804.t1 |
| chr5.2 | exon | 52557042 | 52557200 | 52557042 | ID=MS.gene062804.t1.exon4;Parent=MS.gene062804.t1 |
| chr5.2 | CDS | 52557042 | 52557200 | 52557042 | ID=cds.MS.gene062804.t1;Parent=MS.gene062804.t1 |
| chr5.2 | exon | 52555038 | 52555207 | 52555038 | ID=MS.gene062804.t1.exon5;Parent=MS.gene062804.t1 |
| chr5.2 | CDS | 52555038 | 52555207 | 52555038 | ID=cds.MS.gene062804.t1;Parent=MS.gene062804.t1 |
| chr5.2 | exon | 52554516 | 52554671 | 52554516 | ID=MS.gene062804.t1.exon6;Parent=MS.gene062804.t1 |
| chr5.2 | CDS | 52554516 | 52554671 | 52554516 | ID=cds.MS.gene062804.t1;Parent=MS.gene062804.t1 |
| chr5.2 | exon | 52553860 | 52554212 | 52553860 | ID=MS.gene062804.t1.exon7;Parent=MS.gene062804.t1 |
| chr5.2 | CDS | 52553860 | 52554212 | 52553860 | ID=cds.MS.gene062804.t1;Parent=MS.gene062804.t1 |
| chr5.2 | exon | 52553303 | 52553484 | 52553303 | ID=MS.gene062804.t1.exon8;Parent=MS.gene062804.t1 |
| chr5.2 | CDS | 52553303 | 52553484 | 52553303 | ID=cds.MS.gene062804.t1;Parent=MS.gene062804.t1 |
| Gene Sequence |
| Protein sequence |
