Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049264.t1 | XP_024635380.1 | 99.1 | 466 | 3 | 1 | 1 | 466 | 1 | 465 | 3.80E-256 | 893.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049264.t1 | Q38967 | 67.3 | 465 | 146 | 3 | 11 | 469 | 29 | 493 | 1.0e-185 | 651.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049264.t1 | G8A1P0 | 99.1 | 466 | 3 | 1 | 1 | 466 | 1 | 465 | 2.7e-256 | 893.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049264 | MS.gene049378 | 0.817432 | 3.31E-52 | -1.69E-46 |
| MS.gene049264 | MS.gene051490 | 0.818047 | 2.40E-52 | -1.69E-46 |
| MS.gene049264 | MS.gene051935 | 0.819523 | 1.11E-52 | -1.69E-46 |
| MS.gene049264 | MS.gene05216 | 0.807265 | 5.50E-50 | -1.69E-46 |
| MS.gene049264 | MS.gene052493 | 0.80411 | 2.53E-49 | -1.69E-46 |
| MS.gene049264 | MS.gene054468 | 0.800582 | 1.35E-48 | -1.69E-46 |
| MS.gene049264 | MS.gene054479 | 0.814626 | 1.40E-51 | -1.69E-46 |
| MS.gene049264 | MS.gene054576 | 0.808731 | 2.68E-50 | -1.69E-46 |
| MS.gene049264 | MS.gene054826 | 0.819858 | 9.31E-53 | -1.69E-46 |
| MS.gene049264 | MS.gene055313 | 0.815953 | 7.10E-52 | -1.69E-46 |
| MS.gene049264 | MS.gene055827 | 0.816054 | 6.74E-52 | -1.69E-46 |
| MS.gene049264 | MS.gene058289 | 0.80381 | 2.92E-49 | -1.69E-46 |
| MS.gene049264 | MS.gene059439 | 0.82657 | 2.52E-54 | -1.69E-46 |
| MS.gene049264 | MS.gene059440 | 0.808715 | 2.70E-50 | -1.69E-46 |
| MS.gene049264 | MS.gene060373 | 0.804044 | 2.61E-49 | -1.69E-46 |
| MS.gene049264 | MS.gene060520 | 0.809918 | 1.49E-50 | -1.69E-46 |
| MS.gene049264 | MS.gene060998 | 0.808526 | 2.97E-50 | -1.69E-46 |
| MS.gene049264 | MS.gene06121 | 0.800283 | 1.55E-48 | -1.69E-46 |
| MS.gene049264 | MS.gene061919 | 0.800967 | 1.12E-48 | -1.69E-46 |
| MS.gene049264 | MS.gene062804 | 0.815754 | 7.86E-52 | -1.69E-46 |
| MS.gene049264 | MS.gene06322 | 0.810532 | 1.10E-50 | -1.69E-46 |
| MS.gene049264 | MS.gene06324 | 0.805603 | 1.23E-49 | -1.69E-46 |
| MS.gene049264 | MS.gene063498 | 0.802624 | 5.14E-49 | -1.69E-46 |
| MS.gene049264 | MS.gene06353 | 0.961222 | 1.88E-119 | -1.69E-46 |
| MS.gene049264 | MS.gene06372 | 0.80156 | 8.50E-49 | -1.69E-46 |
| MS.gene049264 | MS.gene065815 | 0.823656 | 1.23E-53 | -1.69E-46 |
| MS.gene049264 | MS.gene065823 | 0.80008 | 1.70E-48 | -1.69E-46 |
| MS.gene049264 | MS.gene07038 | 0.817145 | 3.84E-52 | -1.69E-46 |
| MS.gene049264 | MS.gene071699 | 0.846448 | 2.16E-59 | -1.69E-46 |
| MS.gene049264 | MS.gene071700 | 0.826889 | 2.12E-54 | -1.69E-46 |
| MS.gene049264 | MS.gene072061 | 0.801176 | 1.02E-48 | -1.69E-46 |
| MS.gene049264 | MS.gene072709 | 0.808742 | 2.67E-50 | -1.69E-46 |
| MS.gene049264 | MS.gene073390 | 0.809228 | 2.10E-50 | -1.69E-46 |
| MS.gene049264 | MS.gene074040 | 0.802281 | 6.04E-49 | -1.69E-46 |
| MS.gene049264 | MS.gene20621 | 0.800182 | 1.62E-48 | -1.69E-46 |
| MS.gene049264 | MS.gene24417 | 0.818781 | 1.64E-52 | -1.69E-46 |
| MS.gene049264 | MS.gene25967 | 0.831566 | 1.55E-55 | -1.69E-46 |
| MS.gene049264 | MS.gene25968 | 0.81099 | 8.76E-51 | -1.69E-46 |
| MS.gene049264 | MS.gene27084 | 0.805663 | 1.20E-49 | -1.69E-46 |
| MS.gene049264 | MS.gene28491 | 0.824037 | 1.00E-53 | -1.69E-46 |
| MS.gene049264 | MS.gene28798 | 0.827405 | 1.59E-54 | -1.69E-46 |
| MS.gene049264 | MS.gene29000 | 0.810659 | 1.03E-50 | -1.69E-46 |
| MS.gene049264 | MS.gene29359 | 0.841353 | 5.00E-58 | -1.69E-46 |
| MS.gene049264 | MS.gene29361 | 0.847402 | 1.18E-59 | -1.69E-46 |
| MS.gene049264 | MS.gene29468 | 0.827274 | 1.71E-54 | -1.69E-46 |
| MS.gene049264 | MS.gene29645 | 0.805549 | 1.27E-49 | -1.69E-46 |
| MS.gene049264 | MS.gene31059 | 0.824747 | 6.83E-54 | -1.69E-46 |
| MS.gene049264 | MS.gene31551 | 0.831805 | 1.36E-55 | -1.69E-46 |
| MS.gene049264 | MS.gene31685 | 0.805266 | 1.45E-49 | -1.69E-46 |
| MS.gene049264 | MS.gene32863 | 0.803414 | 3.53E-49 | -1.69E-46 |
| MS.gene049264 | MS.gene32874 | 0.803671 | 3.12E-49 | -1.69E-46 |
| MS.gene049264 | MS.gene33483 | 0.808006 | 3.83E-50 | -1.69E-46 |
| MS.gene049264 | MS.gene34691 | 0.800759 | 1.24E-48 | -1.69E-46 |
| MS.gene049264 | MS.gene35107 | 0.806978 | 6.33E-50 | -1.69E-46 |
| MS.gene049264 | MS.gene36154 | 0.824687 | 7.05E-54 | -1.69E-46 |
| MS.gene049264 | MS.gene36293 | 0.813312 | 2.73E-51 | -1.69E-46 |
| MS.gene049264 | MS.gene36440 | 0.815972 | 7.03E-52 | -1.69E-46 |
| MS.gene049264 | MS.gene36529 | 0.804529 | 2.07E-49 | -1.69E-46 |
| MS.gene049264 | MS.gene39438 | 0.801875 | 7.32E-49 | -1.69E-46 |
| MS.gene049264 | MS.gene40006 | 0.859242 | 4.74E-63 | -1.69E-46 |
| MS.gene049264 | MS.gene40510 | 0.801036 | 1.09E-48 | -1.69E-46 |
| MS.gene049264 | MS.gene40927 | 0.926511 | 4.24E-91 | -1.69E-46 |
| MS.gene049264 | MS.gene40969 | 0.831487 | 1.62E-55 | -1.69E-46 |
| MS.gene049264 | MS.gene48306 | 0.815038 | 1.13E-51 | -1.69E-46 |
| MS.gene049264 | MS.gene50407 | 0.808935 | 2.43E-50 | -1.69E-46 |
| MS.gene049264 | MS.gene50928 | 0.801949 | 7.07E-49 | -1.69E-46 |
| MS.gene049264 | MS.gene50934 | 0.81046 | 1.14E-50 | -1.69E-46 |
| MS.gene049264 | MS.gene51985 | 0.802241 | 6.16E-49 | -1.69E-46 |
| MS.gene049264 | MS.gene53859 | -0.821792 | 3.35E-53 | -1.69E-46 |
| MS.gene049264 | MS.gene54904 | 0.809572 | 1.77E-50 | -1.69E-46 |
| MS.gene049264 | MS.gene55717 | 0.820977 | 5.16E-53 | -1.69E-46 |
| MS.gene049264 | MS.gene55840 | 0.800933 | 1.14E-48 | -1.69E-46 |
| MS.gene049264 | MS.gene56421 | 0.802791 | 4.74E-49 | -1.69E-46 |
| MS.gene049264 | MS.gene57709 | 0.800091 | 1.70E-48 | -1.69E-46 |
| MS.gene049264 | MS.gene58617 | 0.810142 | 1.34E-50 | -1.69E-46 |
| MS.gene049264 | MS.gene58763 | 0.812401 | 4.32E-51 | -1.69E-46 |
| MS.gene049264 | MS.gene63961 | 0.833204 | 6.10E-56 | -1.69E-46 |
| MS.gene049264 | MS.gene64023 | 0.802688 | 4.98E-49 | -1.69E-46 |
| MS.gene049264 | MS.gene64024 | 0.805396 | 1.36E-49 | -1.69E-46 |
| MS.gene049264 | MS.gene64225 | 0.805119 | 1.56E-49 | -1.69E-46 |
| MS.gene049264 | MS.gene66049 | 0.841236 | 5.37E-58 | -1.69E-46 |
| MS.gene049264 | MS.gene67141 | 0.830808 | 2.38E-55 | -1.69E-46 |
| MS.gene049264 | MS.gene68264 | 0.806222 | 9.13E-50 | -1.69E-46 |
| MS.gene049264 | MS.gene70630 | 0.836766 | 7.72E-57 | -1.69E-46 |
| MS.gene049264 | MS.gene71879 | 0.817735 | 2.83E-52 | -1.69E-46 |
| MS.gene049264 | MS.gene72621 | 0.826475 | 2.66E-54 | -1.69E-46 |
| MS.gene049264 | MS.gene73038 | 0.812349 | 4.43E-51 | -1.69E-46 |
| MS.gene049264 | MS.gene74956 | 0.814365 | 1.60E-51 | -1.69E-46 |
| MS.gene049264 | MS.gene77208 | 0.841548 | 4.45E-58 | -1.69E-46 |
| MS.gene049264 | MS.gene77971 | -0.829486 | 5.01E-55 | -1.69E-46 |
| MS.gene049264 | MS.gene78230 | 0.855201 | 7.40E-62 | -1.69E-46 |
| MS.gene049264 | MS.gene81831 | 0.820361 | 7.14E-53 | -1.69E-46 |
| MS.gene049264 | MS.gene88649 | 0.853861 | 1.81E-61 | -1.69E-46 |
| MS.gene049264 | MS.gene89108 | 0.803281 | 3.76E-49 | -1.69E-46 |
| MS.gene049264 | MS.gene91457 | 0.810092 | 1.37E-50 | -1.69E-46 |
| MS.gene049264 | MS.gene93985 | 0.816917 | 4.32E-52 | -1.69E-46 |
| MS.gene049264 | MS.gene97030 | 0.810221 | 1.28E-50 | -1.69E-46 |
| MS.gene049264 | MS.gene98793 | 0.800559 | 1.36E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049264.t1 | MTR_3g096830 | 99.142 | 466 | 3 | 1 | 1 | 466 | 1 | 465 | 0.0 | 941 |
| MS.gene049264.t1 | MTR_3g096800 | 71.581 | 468 | 130 | 2 | 4 | 469 | 11 | 477 | 0.0 | 701 |
| MS.gene049264.t1 | MTR_8g094290 | 70.753 | 465 | 128 | 2 | 7 | 469 | 17 | 475 | 0.0 | 697 |
| MS.gene049264.t1 | MTR_3g096840 | 69.697 | 462 | 138 | 1 | 7 | 466 | 19 | 480 | 0.0 | 682 |
| MS.gene049264.t1 | MTR_3g088455 | 67.516 | 471 | 146 | 3 | 4 | 469 | 11 | 479 | 0.0 | 676 |
| MS.gene049264.t1 | MTR_3g088475 | 66.949 | 472 | 148 | 4 | 4 | 469 | 11 | 480 | 0.0 | 661 |
| MS.gene049264.t1 | MTR_4g073520 | 63.674 | 479 | 163 | 3 | 2 | 469 | 34 | 512 | 0.0 | 647 |
| MS.gene049264.t1 | MTR_4g073520 | 63.674 | 479 | 163 | 3 | 2 | 469 | 34 | 512 | 0.0 | 646 |
| MS.gene049264.t1 | MTR_1g029750 | 66.737 | 472 | 146 | 4 | 4 | 469 | 17 | 483 | 0.0 | 643 |
| MS.gene049264.t1 | MTR_3g110660 | 56.652 | 466 | 195 | 4 | 7 | 465 | 13 | 478 | 0.0 | 544 |
| MS.gene049264.t1 | MTR_1g007380 | 56.290 | 469 | 198 | 4 | 7 | 468 | 3 | 471 | 0.0 | 543 |
| MS.gene049264.t1 | MTR_1g105980 | 56.236 | 457 | 193 | 4 | 16 | 465 | 11 | 467 | 0.0 | 533 |
| MS.gene049264.t1 | MTR_3g088465 | 66.755 | 376 | 117 | 4 | 4 | 373 | 11 | 384 | 0.0 | 525 |
| MS.gene049264.t1 | MTR_1g105990 | 57.143 | 455 | 185 | 5 | 16 | 460 | 10 | 464 | 0.0 | 518 |
| MS.gene049264.t1 | MTR_1g106000 | 54.902 | 459 | 191 | 5 | 26 | 468 | 14 | 472 | 6.05e-180 | 512 |
| MS.gene049264.t1 | MTR_1g105995 | 52.979 | 470 | 212 | 5 | 6 | 468 | 2 | 469 | 3.06e-179 | 510 |
| MS.gene049264.t1 | MTR_3g461440 | 51.345 | 446 | 210 | 3 | 15 | 455 | 11 | 454 | 6.59e-166 | 476 |
| MS.gene049264.t1 | MTR_1g007270 | 49.680 | 469 | 223 | 6 | 2 | 465 | 9 | 469 | 5.42e-165 | 474 |
| MS.gene049264.t1 | MTR_3g461470 | 50.897 | 446 | 212 | 3 | 15 | 455 | 11 | 454 | 4.92e-163 | 469 |
| MS.gene049264.t1 | MTR_3g110420 | 49.894 | 471 | 226 | 5 | 1 | 465 | 1 | 467 | 6.48e-161 | 464 |
| MS.gene049264.t1 | MTR_1g007180 | 48.998 | 449 | 224 | 3 | 21 | 465 | 6 | 453 | 4.28e-160 | 461 |
| MS.gene049264.t1 | MTR_5g096840 | 50.228 | 438 | 210 | 4 | 24 | 455 | 26 | 461 | 7.64e-160 | 461 |
| MS.gene049264.t1 | MTR_2g031750 | 49.778 | 450 | 221 | 3 | 20 | 465 | 5 | 453 | 2.23e-158 | 456 |
| MS.gene049264.t1 | MTR_3g461430 | 50.457 | 438 | 210 | 3 | 25 | 457 | 28 | 463 | 4.92e-158 | 458 |
| MS.gene049264.t1 | MTR_3g061390 | 50.113 | 441 | 213 | 3 | 20 | 455 | 16 | 454 | 3.57e-157 | 454 |
| MS.gene049264.t1 | MTR_1g007240 | 48.667 | 450 | 226 | 3 | 21 | 466 | 6 | 454 | 3.06e-155 | 449 |
| MS.gene049264.t1 | MTR_3g461480 | 49.660 | 441 | 214 | 4 | 21 | 455 | 21 | 459 | 9.87e-151 | 437 |
| MS.gene049264.t1 | MTR_3g110430 | 47.556 | 450 | 229 | 4 | 21 | 465 | 55 | 502 | 1.32e-140 | 413 |
| MS.gene049264.t1 | MTR_3g110660 | 60.000 | 330 | 128 | 3 | 7 | 332 | 13 | 342 | 6.46e-137 | 399 |
| MS.gene049264.t1 | MTR_5g096850 | 44.266 | 436 | 235 | 4 | 26 | 455 | 24 | 457 | 7.86e-132 | 389 |
| MS.gene049264.t1 | MTR_2g031750 | 48.031 | 381 | 193 | 3 | 89 | 465 | 7 | 386 | 1.46e-124 | 368 |
| MS.gene049264.t1 | MTR_3g461440 | 52.830 | 318 | 143 | 3 | 143 | 455 | 2 | 317 | 1.79e-119 | 352 |
| MS.gene049264.t1 | MTR_5g017200 | 63.636 | 264 | 82 | 4 | 7 | 270 | 15 | 264 | 2.06e-107 | 320 |
| MS.gene049264.t1 | MTR_3g110420 | 47.761 | 335 | 169 | 3 | 1 | 332 | 1 | 332 | 5.51e-107 | 321 |
| MS.gene049264.t1 | MTR_1g007180 | 47.667 | 300 | 152 | 3 | 170 | 465 | 71 | 369 | 1.69e-95 | 293 |
| MS.gene049264.t1 | MTR_6g022790 | 29.185 | 466 | 286 | 11 | 12 | 463 | 17 | 452 | 1.65e-50 | 178 |
| MS.gene049264.t1 | MTR_1g007190 | 46.606 | 221 | 81 | 6 | 37 | 257 | 20 | 203 | 4.52e-49 | 167 |
| MS.gene049264.t1 | MTR_2g101920 | 28.728 | 456 | 280 | 10 | 23 | 466 | 39 | 461 | 1.15e-45 | 165 |
| MS.gene049264.t1 | MTR_8g080120 | 28.319 | 452 | 286 | 10 | 23 | 466 | 15 | 436 | 1.69e-45 | 164 |
| MS.gene049264.t1 | MTR_4g103890 | 28.959 | 442 | 276 | 10 | 28 | 463 | 11 | 420 | 4.51e-45 | 163 |
| MS.gene049264.t1 | MTR_1g070470 | 27.468 | 466 | 298 | 12 | 10 | 465 | 2 | 437 | 1.85e-43 | 159 |
| MS.gene049264.t1 | MTR_3g005740 | 28.409 | 440 | 285 | 7 | 28 | 463 | 53 | 466 | 6.57e-43 | 158 |
| MS.gene049264.t1 | MTR_7g038910 | 29.677 | 465 | 269 | 12 | 21 | 462 | 10 | 439 | 4.08e-41 | 152 |
| MS.gene049264.t1 | MTR_5g054730 | 29.299 | 471 | 289 | 13 | 6 | 466 | 3 | 439 | 3.91e-39 | 147 |
| MS.gene049264.t1 | MTR_6g023065 | 29.412 | 442 | 276 | 10 | 27 | 463 | 50 | 460 | 5.00e-39 | 147 |
| MS.gene049264.t1 | MTR_6g022780 | 29.252 | 441 | 277 | 9 | 28 | 463 | 15 | 425 | 7.85e-39 | 146 |
| MS.gene049264.t1 | MTR_7g038910 | 29.668 | 391 | 217 | 12 | 21 | 388 | 10 | 365 | 2.98e-38 | 144 |
| MS.gene049264.t1 | MTR_7g038910 | 29.427 | 384 | 211 | 12 | 21 | 380 | 10 | 357 | 3.92e-38 | 143 |
| MS.gene049264.t1 | MTR_6g023075 | 28.540 | 452 | 284 | 10 | 21 | 463 | 4 | 425 | 1.19e-37 | 142 |
| MS.gene049264.t1 | MTR_2g096830 | 29.204 | 452 | 281 | 10 | 21 | 463 | 4 | 425 | 4.98e-36 | 138 |
| MS.gene049264.t1 | MTR_3g085820 | 29.367 | 395 | 234 | 12 | 4 | 388 | 9 | 368 | 8.31e-36 | 137 |
| MS.gene049264.t1 | MTR_1g093020 | 27.447 | 470 | 290 | 14 | 10 | 466 | 6 | 437 | 5.32e-35 | 135 |
| MS.gene049264.t1 | MTR_1g093020 | 28.341 | 434 | 260 | 14 | 10 | 430 | 6 | 401 | 1.40e-34 | 134 |
| MS.gene049264.t1 | MTR_4g055610 | 27.716 | 451 | 289 | 14 | 26 | 467 | 39 | 461 | 1.04e-33 | 132 |
| MS.gene049264.t1 | MTR_1g093030 | 25.738 | 474 | 299 | 12 | 7 | 466 | 3 | 437 | 3.54e-32 | 127 |
| MS.gene049264.t1 | MTR_2g096830 | 30.178 | 338 | 209 | 9 | 21 | 348 | 4 | 324 | 3.75e-32 | 125 |
| MS.gene049264.t1 | MTR_0531s0020 | 29.143 | 350 | 220 | 8 | 3 | 342 | 21 | 352 | 6.15e-32 | 125 |
| MS.gene049264.t1 | MTR_8g099320 | 25.210 | 476 | 312 | 14 | 10 | 468 | 2 | 450 | 1.76e-31 | 126 |
| MS.gene049264.t1 | MTR_1g492640 | 26.862 | 443 | 277 | 17 | 38 | 466 | 70 | 479 | 3.43e-27 | 114 |
| MS.gene049264.t1 | MTR_4g075750 | 24.580 | 476 | 303 | 14 | 16 | 464 | 55 | 501 | 5.44e-25 | 107 |
| MS.gene049264.t1 | MTR_3g115090 | 25.107 | 466 | 277 | 18 | 21 | 455 | 74 | 498 | 5.54e-25 | 108 |
| MS.gene049264.t1 | MTR_5g081630 | 26.077 | 418 | 258 | 14 | 58 | 465 | 4 | 380 | 2.84e-22 | 98.6 |
| MS.gene049264.t1 | MTR_5g023260 | 23.831 | 449 | 282 | 16 | 27 | 452 | 107 | 518 | 3.99e-21 | 96.7 |
| MS.gene049264.t1 | MTR_1g492640 | 26.923 | 364 | 221 | 15 | 116 | 466 | 16 | 347 | 9.67e-19 | 87.8 |
| MS.gene049264.t1 | MTR_5g023240 | 23.877 | 423 | 267 | 16 | 28 | 430 | 87 | 474 | 4.91e-18 | 87.0 |
| MS.gene049264.t1 | MTR_3g069960 | 25.376 | 465 | 291 | 18 | 17 | 465 | 9 | 433 | 1.05e-17 | 85.5 |
| MS.gene049264.t1 | MTR_3g069960 | 27.295 | 403 | 242 | 18 | 73 | 465 | 19 | 380 | 1.63e-17 | 84.3 |
| MS.gene049264.t1 | MTR_4g104510 | 23.029 | 482 | 303 | 17 | 1 | 465 | 15 | 445 | 4.29e-16 | 80.9 |
| MS.gene049264.t1 | MTR_4g104510 | 22.934 | 484 | 303 | 17 | 1 | 465 | 15 | 447 | 1.19e-15 | 79.3 |
| MS.gene049264.t1 | MTR_1g492640 | 25.484 | 310 | 205 | 11 | 38 | 338 | 70 | 362 | 6.75e-15 | 76.6 |
| MS.gene049264.t1 | MTR_1g492640 | 25.484 | 310 | 205 | 11 | 38 | 338 | 52 | 344 | 7.64e-15 | 76.3 |
| MS.gene049264.t1 | MTR_2g012470 | 22.944 | 462 | 295 | 15 | 27 | 464 | 95 | 519 | 6.75e-13 | 71.2 |
| MS.gene049264.t1 | MTR_1g094620 | 23.590 | 390 | 243 | 13 | 40 | 419 | 162 | 506 | 5.80e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049264.t1 | AT5G09220 | 69.462 | 465 | 136 | 3 | 11 | 469 | 29 | 493 | 0.0 | 694 |
| MS.gene049264.t1 | AT1G77380 | 69.828 | 464 | 135 | 2 | 11 | 469 | 13 | 476 | 0.0 | 675 |
| MS.gene049264.t1 | AT5G63850 | 68.202 | 456 | 139 | 3 | 20 | 469 | 11 | 466 | 0.0 | 671 |
| MS.gene049264.t1 | AT1G44100 | 64.375 | 480 | 160 | 3 | 1 | 469 | 1 | 480 | 0.0 | 650 |
| MS.gene049264.t1 | AT1G58360 | 55.850 | 453 | 194 | 3 | 21 | 467 | 30 | 482 | 0.0 | 541 |
| MS.gene049264.t1 | AT1G10010 | 56.763 | 451 | 189 | 3 | 21 | 465 | 21 | 471 | 0.0 | 539 |
| MS.gene049264.t1 | AT1G10010 | 56.763 | 451 | 189 | 3 | 21 | 465 | 22 | 472 | 0.0 | 539 |
| MS.gene049264.t1 | AT5G49630 | 56.485 | 478 | 195 | 8 | 1 | 465 | 1 | 478 | 0.0 | 535 |
| MS.gene049264.t1 | AT5G23810 | 47.732 | 463 | 226 | 7 | 1 | 452 | 1 | 458 | 4.37e-142 | 416 |
| MS.gene049264.t1 | AT5G23810 | 48.571 | 350 | 171 | 5 | 1 | 345 | 1 | 346 | 1.17e-107 | 324 |
| MS.gene049264.t1 | AT5G23810 | 47.308 | 260 | 130 | 4 | 1 | 257 | 1 | 256 | 1.88e-75 | 238 |
| MS.gene049264.t1 | AT5G23810 | 46.698 | 212 | 108 | 3 | 1 | 209 | 1 | 210 | 7.46e-59 | 193 |
| MS.gene049264.t1 | AT5G23810 | 46.698 | 212 | 108 | 3 | 1 | 209 | 1 | 210 | 7.46e-59 | 193 |
| MS.gene049264.t1 | AT5G40780 | 27.660 | 470 | 287 | 11 | 14 | 463 | 7 | 443 | 4.87e-46 | 166 |
| MS.gene049264.t1 | AT1G24400 | 28.998 | 469 | 286 | 11 | 9 | 466 | 9 | 441 | 5.53e-46 | 166 |
| MS.gene049264.t1 | AT1G48640 | 28.178 | 472 | 293 | 9 | 12 | 466 | 11 | 453 | 1.03e-45 | 165 |
| MS.gene049264.t1 | AT1G67640 | 29.747 | 474 | 292 | 10 | 1 | 466 | 1 | 441 | 1.71e-44 | 162 |
| MS.gene049264.t1 | AT5G40780 | 28.235 | 425 | 271 | 9 | 43 | 463 | 1 | 395 | 7.10e-42 | 154 |
| MS.gene049264.t1 | AT5G40780 | 28.235 | 425 | 271 | 9 | 43 | 463 | 1 | 395 | 7.10e-42 | 154 |
| MS.gene049264.t1 | AT3G01760 | 26.923 | 468 | 300 | 10 | 9 | 461 | 2 | 442 | 2.25e-41 | 153 |
| MS.gene049264.t1 | AT1G61270 | 28.507 | 442 | 276 | 9 | 28 | 461 | 34 | 443 | 8.26e-40 | 149 |
| MS.gene049264.t1 | AT1G71680 | 28.477 | 453 | 271 | 10 | 28 | 466 | 35 | 448 | 1.50e-37 | 143 |
| MS.gene049264.t1 | AT1G71680 | 30.539 | 334 | 193 | 8 | 28 | 347 | 35 | 343 | 2.87e-33 | 129 |
| MS.gene049264.t1 | AT1G08230 | 27.938 | 451 | 286 | 12 | 26 | 465 | 26 | 448 | 6.75e-32 | 127 |
| MS.gene049264.t1 | AT1G25530 | 26.477 | 457 | 297 | 11 | 13 | 463 | 14 | 437 | 8.05e-31 | 124 |
| MS.gene049264.t1 | AT5G41800 | 25.702 | 463 | 286 | 15 | 26 | 468 | 25 | 449 | 2.69e-26 | 111 |
| MS.gene049264.t1 | AT2G39890 | 25.481 | 416 | 263 | 13 | 58 | 465 | 63 | 439 | 1.33e-22 | 100 |
| MS.gene049264.t1 | AT2G39890 | 25.481 | 416 | 263 | 13 | 58 | 465 | 63 | 439 | 1.33e-22 | 100 |
| MS.gene049264.t1 | AT2G39890 | 25.481 | 416 | 263 | 13 | 58 | 465 | 4 | 380 | 1.84e-22 | 99.4 |
| MS.gene049264.t1 | AT2G36590 | 25.436 | 401 | 248 | 15 | 33 | 422 | 30 | 390 | 2.04e-21 | 96.7 |
| MS.gene049264.t1 | AT1G08230 | 29.582 | 311 | 193 | 7 | 163 | 465 | 37 | 329 | 7.41e-21 | 94.0 |
| MS.gene049264.t1 | AT1G08230 | 29.582 | 311 | 193 | 7 | 163 | 465 | 37 | 329 | 7.41e-21 | 94.0 |
| MS.gene049264.t1 | AT1G08230 | 29.582 | 311 | 193 | 7 | 163 | 465 | 37 | 329 | 7.41e-21 | 94.0 |
| MS.gene049264.t1 | AT1G08230 | 29.582 | 311 | 193 | 7 | 163 | 465 | 56 | 348 | 8.04e-21 | 94.0 |
| MS.gene049264.t1 | AT3G55740 | 25.178 | 421 | 258 | 15 | 58 | 465 | 60 | 436 | 2.18e-20 | 93.6 |
| MS.gene049264.t1 | AT3G55740 | 24.703 | 421 | 260 | 14 | 58 | 465 | 4 | 380 | 2.38e-20 | 93.2 |
| MS.gene049264.t1 | AT3G55740 | 24.703 | 421 | 260 | 14 | 58 | 465 | 4 | 380 | 2.38e-20 | 93.2 |
| MS.gene049264.t1 | AT4G35180 | 24.429 | 438 | 286 | 11 | 27 | 451 | 57 | 462 | 4.09e-15 | 77.8 |
| MS.gene049264.t1 | AT1G47670 | 23.377 | 462 | 293 | 15 | 27 | 464 | 93 | 517 | 3.14e-12 | 68.9 |
| MS.gene049264.t1 | AT5G02170 | 21.934 | 424 | 288 | 11 | 2 | 422 | 105 | 488 | 4.17e-11 | 65.5 |
Find 95 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCCATTTATAACTCCATTT+TGG | 0.096747 | 3.3:-80046351 | None:intergenic |
| TCTTTCACCTATTCCTTTAT+TGG | 0.119863 | 3.3:+80045270 | MS.gene049264:CDS |
| TCCTTTCTTCAATGATGTTT+TGG | 0.143872 | 3.3:+80046251 | MS.gene049264:CDS |
| TTCGATAACATTCAGCTAAA+AGG | 0.186423 | 3.3:-80043921 | None:intergenic |
| TCAAATTCTCATTGAAATTC+AGG | 0.204663 | 3.3:+80045536 | MS.gene049264:CDS |
| ACCTATTCCTTTATTGGCCT+TGG | 0.221167 | 3.3:+80045276 | MS.gene049264:CDS |
| GAATTTGAGAAAAGAAAATT+TGG | 0.225678 | 3.3:-80045200 | None:intergenic |
| TCCTTCAAGGGTAGCCTTAC+AGG | 0.240233 | 3.3:+80045426 | MS.gene049264:CDS |
| GCTCAGTTGGGTTGGGTAAT+TGG | 0.253849 | 3.3:+80043850 | MS.gene049264:CDS |
| TACTTGGAGCAGTAGGGTTT+TGG | 0.256465 | 3.3:+80046277 | MS.gene049264:CDS |
| ACTGGAAAATAGACTGTTAA+AGG | 0.269131 | 3.3:-80046300 | None:intergenic |
| GGAAGCTGTTCACACCATTC+TGG | 0.269142 | 3.3:+80043984 | MS.gene049264:CDS |
| TCCCAAAATGGAGTTATAAA+TGG | 0.282029 | 3.3:+80046349 | MS.gene049264:CDS |
| GTCATCATCATCATACAAAT+TGG | 0.302533 | 3.3:-80043566 | None:intergenic |
| GAATACCGAATTCCAATTCC+TGG | 0.303298 | 3.3:+80046144 | MS.gene049264:CDS |
| GCAATATCAATGAGCCAATA+TGG | 0.308652 | 3.3:-80046012 | None:intergenic |
| CACACCTATACTTATCTTTG+TGG | 0.330592 | 3.3:-80045899 | None:intergenic |
| TAAATCTATTCAGATTAATA+TGG | 0.331283 | 3.3:+80046184 | MS.gene049264:CDS |
| GTTCAGTACACAAATCTTTA+CGG | 0.334346 | 3.3:+80044395 | MS.gene049264:CDS |
| TTAGCTGAATGTTATCGAAT+TGG | 0.352508 | 3.3:+80043925 | MS.gene049264:CDS |
| TAGGGTTGAAAACCAGGAAT+TGG | 0.354439 | 3.3:-80046156 | None:intergenic |
| CGAATTGGCGATCCTCATTA+CGG | 0.356500 | 3.3:+80043940 | MS.gene049264:CDS |
| CTAAATATAACCTGCAACTT+TGG | 0.358818 | 3.3:-80045310 | None:intergenic |
| CTAGCAGTTGCCAAAGTTGC+AGG | 0.362617 | 3.3:+80045300 | MS.gene049264:CDS |
| TGCTAGACCAAGGCCAATAA+AGG | 0.370826 | 3.3:-80045283 | None:intergenic |
| TCTGAATAGATTTAGATTGT+AGG | 0.380758 | 3.3:-80046175 | None:intergenic |
| AATCTTTACGGAACTGCAAT+AGG | 0.394383 | 3.3:+80044407 | MS.gene049264:CDS |
| CTGAATAGATTTAGATTGTA+GGG | 0.395935 | 3.3:-80046174 | None:intergenic |
| GTATCAGTTGTGGCTGTTGT+TGG | 0.403765 | 3.3:+80046408 | MS.gene049264:CDS |
| TCCTGTAAGGCTACCCTTGA+AGG | 0.408826 | 3.3:-80045427 | None:intergenic |
| TTGGGATTACTTGGAGCAGT+AGG | 0.409541 | 3.3:+80046270 | MS.gene049264:CDS |
| AAAGAGAAACTATACTTTCA+TGG | 0.411359 | 3.3:+80043963 | MS.gene049264:CDS |
| GAAAACCAGGAATTGGAATT+CGG | 0.418612 | 3.3:-80046149 | None:intergenic |
| AATCCATACATGATAGCATT+TGG | 0.426053 | 3.3:+80045171 | MS.gene049264:CDS |
| GCAATAGGATACACAATTGC+GGG | 0.428317 | 3.3:+80044422 | MS.gene049264:CDS |
| GATGAGACAGGGCAATAAAA+AGG | 0.431952 | 3.3:+80045097 | MS.gene049264:intron |
| AGAAGGGTTGCGCGTATACT+TGG | 0.437084 | 3.3:-80046071 | None:intergenic |
| GAAGCTGTTCACACCATTCT+GGG | 0.441958 | 3.3:+80043985 | MS.gene049264:CDS |
| ACTCCAAATGCTATCATGTA+TGG | 0.442408 | 3.3:-80045174 | None:intergenic |
| TCGATAACATTCAGCTAAAA+GGG | 0.448447 | 3.3:-80043920 | None:intergenic |
| TTTCTCGACGAAAGCAAAGA+AGG | 0.450672 | 3.3:-80046088 | None:intergenic |
| TCTGACTGTTTGCATTCCTC+AGG | 0.454495 | 3.3:+80045120 | MS.gene049264:CDS |
| GACAGAAAATGGATCCTTCA+AGG | 0.455326 | 3.3:+80045413 | MS.gene049264:intron |
| TATCAGTTGTGGCTGTTGTT+GGG | 0.456332 | 3.3:+80046409 | MS.gene049264:CDS |
| CACATAATAACAGCAGTTGT+AGG | 0.459141 | 3.3:+80043796 | MS.gene049264:CDS |
| GATCACTCACATCATGCTAA+TGG | 0.460901 | 3.3:-80044447 | None:intergenic |
| TGGGGAACTTTCCAAGCTCT+TGG | 0.462799 | 3.3:+80045486 | MS.gene049264:CDS |
| TTTCAATAATCAGTTGTGAA+TGG | 0.464770 | 3.3:-80046471 | None:intergenic |
| TGCATGGGTTATGCAGCATT+TGG | 0.465101 | 3.3:+80045949 | MS.gene049264:CDS |
| GGTTTCAATGACACCCTTTG+TGG | 0.466023 | 3.3:+80044368 | MS.gene049264:CDS |
| ACCAAGGCCAATAAAGGAAT+AGG | 0.466847 | 3.3:-80045277 | None:intergenic |
| TAGTTTCTCTTTCCGTAATG+AGG | 0.467007 | 3.3:-80043952 | None:intergenic |
| GCATTTGGAGACACAGCACC+AGG | 0.467683 | 3.3:+80045964 | MS.gene049264:CDS |
| GGCAATAGCTCAGTTGGGTT+GGG | 0.474874 | 3.3:+80043843 | MS.gene049264:CDS |
| ATAACAGCAGTTGTAGGATC+AGG | 0.483816 | 3.3:+80043802 | MS.gene049264:CDS |
| TTCCAATGCTTACTCCTGTA+AGG | 0.491026 | 3.3:-80045440 | None:intergenic |
| AGCATGGGCAATAGCTCAGT+TGG | 0.492596 | 3.3:+80043837 | MS.gene049264:CDS |
| CAAGCCACAAAGATAAGTAT+AGG | 0.492781 | 3.3:+80045895 | MS.gene049264:CDS |
| GGGCAATAGCTCAGTTGGGT+TGG | 0.493857 | 3.3:+80043842 | MS.gene049264:CDS |
| AGGCTATGTTGCCAAGAGCT+TGG | 0.496753 | 3.3:-80045497 | None:intergenic |
| CCCAAAACATCATTGAAGAA+AGG | 0.503059 | 3.3:-80046252 | None:intergenic |
| TAAAGAGTTGTTACCCAGAA+TGG | 0.504372 | 3.3:-80043998 | None:intergenic |
| TTATATGCTTTGTGGCTGCA+TGG | 0.505265 | 3.3:+80045933 | MS.gene049264:CDS |
| GATGACCGTCTCAAAAGAAC+AGG | 0.508021 | 3.3:+80043583 | MS.gene049264:CDS |
| AGATTGTAGGGTTGAAAACC+AGG | 0.509683 | 3.3:-80046162 | None:intergenic |
| GCTATCGTAATTCACCTTGT+GGG | 0.513660 | 3.3:+80046042 | MS.gene049264:CDS |
| CAGGAGTGTTGTCGTTAGCA+TGG | 0.516340 | 3.3:+80043821 | MS.gene049264:CDS |
| TGGGATTACTTGGAGCAGTA+GGG | 0.521905 | 3.3:+80046271 | MS.gene049264:CDS |
| CGCTATCGTAATTCACCTTG+TGG | 0.523493 | 3.3:+80046041 | MS.gene049264:CDS |
| GACTGTTTGCATTCCTCAGG+AGG | 0.526744 | 3.3:+80045123 | MS.gene049264:CDS |
| GCATGGGCAATAGCTCAGTT+GGG | 0.527744 | 3.3:+80043838 | MS.gene049264:CDS |
| TGTTTGATATACATCTCCAC+TGG | 0.530626 | 3.3:-80046318 | None:intergenic |
| GTTTCAATGACACCCTTTGT+GGG | 0.537172 | 3.3:+80044369 | MS.gene049264:CDS |
| TATATGCTTTGTGGCTGCAT+GGG | 0.540477 | 3.3:+80045934 | MS.gene049264:CDS |
| TGTGGCTGTTGTTGGGTCAG+TGG | 0.549777 | 3.3:+80046416 | MS.gene049264:CDS |
| TTCTCGACGAAAGCAAAGAA+GGG | 0.555174 | 3.3:-80046087 | None:intergenic |
| AGCCTTACAGGAGTAAGCAT+TGG | 0.562434 | 3.3:+80045438 | MS.gene049264:CDS |
| ACAGAAAATGGATCCTTCAA+GGG | 0.570148 | 3.3:+80045414 | MS.gene049264:intron |
| GTACTGAACTATCCCACAAA+GGG | 0.571823 | 3.3:-80044381 | None:intergenic |
| GCACCAGGGAACTTACTCAC+TGG | 0.573888 | 3.3:+80045979 | MS.gene049264:CDS |
| CTGAAGAAAATCATAACTGA+AGG | 0.583795 | 3.3:-80043874 | None:intergenic |
| AGGAGTGTTGTCGTTAGCAT+GGG | 0.586525 | 3.3:+80043822 | MS.gene049264:CDS |
| ATCTATTCAGATTAATATGG+AGG | 0.594981 | 3.3:+80046187 | MS.gene049264:CDS |
| TCTAGAATTTGACATGGAGG+TGG | 0.597976 | 3.3:+80043504 | None:intergenic |
| ATGTCTTGTAGTATCAGTTG+TGG | 0.607208 | 3.3:+80046398 | MS.gene049264:CDS |
| AAATTGGAGTCTTTGTGTGA+AGG | 0.608942 | 3.3:-80043550 | None:intergenic |
| ATTCCAGTGAGTAAGTTCCC+TGG | 0.614262 | 3.3:-80045982 | None:intergenic |
| TGCAATAGGATACACAATTG+CGG | 0.626230 | 3.3:+80044421 | MS.gene049264:CDS |
| TTGAGAATATGAATATGCAA+AGG | 0.631765 | 3.3:-80045517 | None:intergenic |
| ATACTTGGTATGCTCCCACA+AGG | 0.667351 | 3.3:-80046056 | None:intergenic |
| TGTACTGAACTATCCCACAA+AGG | 0.675008 | 3.3:-80044382 | None:intergenic |
| CACAAGGTGAATTACGATAG+CGG | 0.685183 | 3.3:-80046040 | None:intergenic |
| CTTTGGCAACTGCTAGACCA+AGG | 0.697595 | 3.3:-80045293 | None:intergenic |
| CATTTGGAGACACAGCACCA+GGG | 0.729488 | 3.3:+80045965 | MS.gene049264:CDS |
| AATCAACATTGCTATCACAG+TGG | 0.767055 | 3.3:-80046229 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAATAAATTTGTAACAA+TGG | - | chr3.3:80044884-80044903 | None:intergenic | 10.0% |
| !!! | AAAATCAATATCAATTTTTT+TGG | - | chr3.3:80044552-80044571 | None:intergenic | 10.0% |
| !!! | AAATCAATATCAATTTTTTT+GGG | - | chr3.3:80044551-80044570 | None:intergenic | 10.0% |
| !!! | AAGATAATTTTATTCTTAAT+TGG | - | chr3.3:80044604-80044623 | None:intergenic | 10.0% |
| !!! | ATTAATTAATTAATTTGTTG+TGG | - | chr3.3:80043611-80043630 | None:intergenic | 10.0% |
| !!! | ATTGTTACAAATTTATTTTT+AGG | + | chr3.3:80044883-80044902 | MS.gene049264:intron | 10.0% |
| !!! | ATTTTATTCAATTTATCTTT+TGG | + | chr3.3:80044702-80044721 | MS.gene049264:intron | 10.0% |
| !! | TAAATCTATTCAGATTAATA+TGG | + | chr3.3:80046184-80046203 | MS.gene049264:CDS | 15.0% |
| !! | TGAAATTAATTAATGTAAAC+AGG | - | chr3.3:80043647-80043666 | None:intergenic | 15.0% |
| !! | ACATATATAGAAATCAGATT+TGG | + | chr3.3:80044675-80044694 | MS.gene049264:intron | 20.0% |
| !! | AGAAAATTGTGATAAAAAGA+TGG | + | chr3.3:80046106-80046125 | MS.gene049264:CDS | 20.0% |
| !! | ATATGATAAAAAGTGACAAA+AGG | + | chr3.3:80043735-80043754 | MS.gene049264:intron | 20.0% |
| !! | GAATTTGAGAAAAGAAAATT+TGG | - | chr3.3:80045203-80045222 | None:intergenic | 20.0% |
| !! | TCTGAAAAAAGTTTATAAAC+CGG | - | chr3.3:80045741-80045760 | None:intergenic | 20.0% |
| !! | TTTAATAATCACTACTAGAA+AGG | + | chr3.3:80044233-80044252 | MS.gene049264:intron | 20.0% |
| !! | TTTGACAAAATTTGTAACAA+TGG | - | chr3.3:80044857-80044876 | None:intergenic | 20.0% |
| !!! | ACCATATTAAGTTTTTATAC+CGG | + | chr3.3:80045691-80045710 | MS.gene049264:intron | 20.0% |
| !!! | ACTATTTTTGATATTCTGTT+TGG | + | chr3.3:80044146-80044165 | MS.gene049264:intron | 20.0% |
| !!! | CAAGAATATTTAGTTTGATA+TGG | + | chr3.3:80045042-80045061 | MS.gene049264:intron | 20.0% |
| !!! | TGAGTATGTTTTAATTAAAC+TGG | + | chr3.3:80045069-80045088 | MS.gene049264:intron | 20.0% |
| !!! | TGTTTTAATTAAACTGGTTT+TGG | + | chr3.3:80045075-80045094 | MS.gene049264:intron | 20.0% |
| ! | AAAATCGAACCAAATCAAAT+TGG | + | chr3.3:80044059-80044078 | MS.gene049264:intron | 25.0% |
| ! | AAAATTTGTAACAATGGATG+TGG | - | chr3.3:80044851-80044870 | None:intergenic | 25.0% |
| ! | AAAGAGAAACTATACTTTCA+TGG | + | chr3.3:80043963-80043982 | MS.gene049264:CDS | 25.0% |
| ! | AACAAAAAAAGATCCCAAAA+TGG | + | chr3.3:80046337-80046356 | MS.gene049264:CDS | 25.0% |
| ! | ATCTATTCAGATTAATATGG+AGG | + | chr3.3:80046187-80046206 | MS.gene049264:CDS | 25.0% |
| ! | ATGCATTCTTCTTATAAAAC+CGG | + | chr3.3:80045719-80045738 | MS.gene049264:intron | 25.0% |
| ! | CTGAATAGATTTAGATTGTA+GGG | - | chr3.3:80046177-80046196 | None:intergenic | 25.0% |
| ! | TATGATAAATTTAACTCCAC+AGG | + | chr3.3:80045831-80045850 | MS.gene049264:intron | 25.0% |
| ! | TATTCTTGTCAACAGAAATA+AGG | - | chr3.3:80045030-80045049 | None:intergenic | 25.0% |
| ! | TCAAATTCTCATTGAAATTC+AGG | + | chr3.3:80045536-80045555 | MS.gene049264:CDS | 25.0% |
| ! | TCTGAATAGATTTAGATTGT+AGG | - | chr3.3:80046178-80046197 | None:intergenic | 25.0% |
| ! | TTATGAAGCAATAGTGTTTA+TGG | + | chr3.3:80044091-80044110 | MS.gene049264:intron | 25.0% |
| ! | TTGAGAATATGAATATGCAA+AGG | - | chr3.3:80045520-80045539 | None:intergenic | 25.0% |
| !! | ATATAGAAATCAGATTTGGT+TGG | + | chr3.3:80044679-80044698 | MS.gene049264:intron | 25.0% |
| !! | ATCCATTTATAACTCCATTT+TGG | - | chr3.3:80046354-80046373 | None:intergenic | 25.0% |
| !! | CCATATTAAGTTTTTATACC+GGG | + | chr3.3:80045692-80045711 | MS.gene049264:intron | 25.0% |
| !! | CTGGAATTTTTAATCCATAT+TGG | + | chr3.3:80045998-80046017 | MS.gene049264:CDS | 25.0% |
| !! | TCCATTTATAACTCCATTTT+GGG | - | chr3.3:80046353-80046372 | None:intergenic | 25.0% |
| !!! | ATAAACTTTTTTCAGAACGT+GGG | + | chr3.3:80045745-80045764 | MS.gene049264:intron | 25.0% |
| !!! | CGGTATTCTTTGTTTATTTT+AGG | - | chr3.3:80046132-80046151 | None:intergenic | 25.0% |
| !!! | TATAAACTTTTTTCAGAACG+TGG | + | chr3.3:80045744-80045763 | MS.gene049264:intron | 25.0% |
| !!! | TTCATTGTTTTTACTTCAGA+TGG | - | chr3.3:80045874-80045893 | None:intergenic | 25.0% |
| !!! | TTCCAGATTTTGATAAAATG+TGG | + | chr3.3:80045220-80045239 | MS.gene049264:CDS | 25.0% |
| AATCCATACATGATAGCATT+TGG | + | chr3.3:80045171-80045190 | MS.gene049264:CDS | 30.0% | |
| AATTGTTCTACGACAGAAAA+TGG | + | chr3.3:80045402-80045421 | MS.gene049264:intron | 30.0% | |
| ACAGAAATAAGGTCAATTAC+TGG | - | chr3.3:80045019-80045038 | None:intergenic | 30.0% | |
| ACTGGAAAATAGACTGTTAA+AGG | - | chr3.3:80046303-80046322 | None:intergenic | 30.0% | |
| ATAACATTCCATTTCTCAGA+AGG | + | chr3.3:80045352-80045371 | MS.gene049264:intron | 30.0% | |
| ATTGGAAAAAACCTAAGACA+TGG | - | chr3.3:80045596-80045615 | None:intergenic | 30.0% | |
| CACCAAATTCAATAGTGTTT+GGG | - | chr3.3:80045630-80045649 | None:intergenic | 30.0% | |
| CCCGGTATAAAAACTTAATA+TGG | - | chr3.3:80045695-80045714 | None:intergenic | 30.0% | |
| CTAAATATAACCTGCAACTT+TGG | - | chr3.3:80045313-80045332 | None:intergenic | 30.0% | |
| CTGAAGAAAATCATAACTGA+AGG | - | chr3.3:80043877-80043896 | None:intergenic | 30.0% | |
| GTCATCATCATCATACAAAT+TGG | - | chr3.3:80043569-80043588 | None:intergenic | 30.0% | |
| GTTCAGTACACAAATCTTTA+CGG | + | chr3.3:80044395-80044414 | MS.gene049264:CDS | 30.0% | |
| TCCCAAAATGGAGTTATAAA+TGG | + | chr3.3:80046349-80046368 | MS.gene049264:CDS | 30.0% | |
| TCGATAACATTCAGCTAAAA+GGG | - | chr3.3:80043923-80043942 | None:intergenic | 30.0% | |
| TCTTTCACCTATTCCTTTAT+TGG | + | chr3.3:80045270-80045289 | MS.gene049264:CDS | 30.0% | |
| TTAGCTGAATGTTATCGAAT+TGG | + | chr3.3:80043925-80043944 | MS.gene049264:CDS | 30.0% | |
| TTCAACAGTCCAATTTGATT+TGG | - | chr3.3:80044071-80044090 | None:intergenic | 30.0% | |
| TTCGATAACATTCAGCTAAA+AGG | - | chr3.3:80043924-80043943 | None:intergenic | 30.0% | |
| ! | AATCAAATGATTTTTGCAGG+AGG | + | chr3.3:80044347-80044366 | MS.gene049264:intron | 30.0% |
| ! | ACTGCATTTTATATGCTTTG+TGG | + | chr3.3:80045925-80045944 | MS.gene049264:CDS | 30.0% |
| ! | CACCACATTTTATCAAAATC+TGG | - | chr3.3:80045225-80045244 | None:intergenic | 30.0% |
| ! | CCTTTCTTCAATGATGTTTT+GGG | + | chr3.3:80046252-80046271 | MS.gene049264:CDS | 30.0% |
| ! | GAGAATCAAATGATTTTTGC+AGG | + | chr3.3:80044344-80044363 | MS.gene049264:intron | 30.0% |
| ! | TCCTTTCTTCAATGATGTTT+TGG | + | chr3.3:80046251-80046270 | MS.gene049264:CDS | 30.0% |
| ! | TTGCTGTTAATCATAACTGA+GGG | + | chr3.3:80044807-80044826 | MS.gene049264:intron | 30.0% |
| ! | TTTAACAGTCTATTTTCCAG+TGG | + | chr3.3:80046302-80046321 | MS.gene049264:CDS | 30.0% |
| !! | CAGATTTTGATAAAATGTGG+TGG | + | chr3.3:80045223-80045242 | MS.gene049264:CDS | 30.0% |
| !! | GTTTTGAACATAGAGAGAAA+AGG | - | chr3.3:80045566-80045585 | None:intergenic | 30.0% |
| !! | TTTGCTGTTAATCATAACTG+AGG | + | chr3.3:80044806-80044825 | MS.gene049264:intron | 30.0% |
| !!! | AATGATGTTTTGGGATTACT+TGG | + | chr3.3:80046261-80046280 | MS.gene049264:CDS | 30.0% |
| !!! | ATTGTTTTTACTTCAGATGG+TGG | - | chr3.3:80045871-80045890 | None:intergenic | 30.0% |
| !!! | GTTTGCTGTTTCTTTTGAAA+AGG | + | chr3.3:80044205-80044224 | MS.gene049264:intron | 30.0% |
| !!! | TGACTTTGTTTTTGACTTCT+TGG | - | chr3.3:80044263-80044282 | None:intergenic | 30.0% |
| !!! | TTCAGATGGTGGATTTTTTA+TGG | - | chr3.3:80045860-80045879 | None:intergenic | 30.0% |
| AAACTAGTGTACCATGTCTT+AGG | + | chr3.3:80045582-80045601 | MS.gene049264:intron | 35.0% | |
| AAATTGGAGTCTTTGTGTGA+AGG | - | chr3.3:80043553-80043572 | None:intergenic | 35.0% | |
| AATAGTGTTTGGGCTTAAGT+GGG | - | chr3.3:80045620-80045639 | None:intergenic | 35.0% | |
| AATCAACATTGCTATCACAG+TGG | - | chr3.3:80046232-80046251 | None:intergenic | 35.0% | |
| AATCTTTACGGAACTGCAAT+AGG | + | chr3.3:80044407-80044426 | MS.gene049264:CDS | 35.0% | |
| ACAATGGATGTGGTACATAT+AGG | - | chr3.3:80044841-80044860 | None:intergenic | 35.0% | |
| ACAGAAAATGGATCCTTCAA+GGG | + | chr3.3:80045414-80045433 | MS.gene049264:intron | 35.0% | |
| ACTCCAAATGCTATCATGTA+TGG | - | chr3.3:80045177-80045196 | None:intergenic | 35.0% | |
| AGCCCAAACACTATTGAATT+TGG | + | chr3.3:80045625-80045644 | MS.gene049264:intron | 35.0% | |
| ATGTCTTGTAGTATCAGTTG+TGG | + | chr3.3:80046398-80046417 | MS.gene049264:CDS | 35.0% | |
| CAAGCCACAAAGATAAGTAT+AGG | + | chr3.3:80045895-80045914 | MS.gene049264:CDS | 35.0% | |
| CACACCTATACTTATCTTTG+TGG | - | chr3.3:80045902-80045921 | None:intergenic | 35.0% | |
| CACATAATAACAGCAGTTGT+AGG | + | chr3.3:80043796-80043815 | MS.gene049264:CDS | 35.0% | |
| CCCAAAACATCATTGAAGAA+AGG | - | chr3.3:80046255-80046274 | None:intergenic | 35.0% | |
| GAAAACCAGGAATTGGAATT+CGG | - | chr3.3:80046152-80046171 | None:intergenic | 35.0% | |
| GCAATATCAATGAGCCAATA+TGG | - | chr3.3:80046015-80046034 | None:intergenic | 35.0% | |
| GCACCAAATTCAATAGTGTT+TGG | - | chr3.3:80045631-80045650 | None:intergenic | 35.0% | |
| GGTGCGTAGATATAAATTGT+GGG | + | chr3.3:80045646-80045665 | MS.gene049264:intron | 35.0% | |
| TAAAACTGATATCGTGCTTG+AGG | - | chr3.3:80044656-80044675 | None:intergenic | 35.0% | |
| TAAAGAGTTGTTACCCAGAA+TGG | - | chr3.3:80044001-80044020 | None:intergenic | 35.0% | |
| TAAGAAGAATGCATAAGACC+CGG | - | chr3.3:80045713-80045732 | None:intergenic | 35.0% | |
| TAGTTTCTCTTTCCGTAATG+AGG | - | chr3.3:80043955-80043974 | None:intergenic | 35.0% | |
| TGACAAAAGCCCAAAAAGTA+TGG | + | chr3.3:80045466-80045485 | MS.gene049264:CDS | 35.0% | |
| TGCAATAGGATACACAATTG+CGG | + | chr3.3:80044421-80044440 | MS.gene049264:CDS | 35.0% | |
| TGGTGCGTAGATATAAATTG+TGG | + | chr3.3:80045645-80045664 | MS.gene049264:intron | 35.0% | |
| TGTTTGATATACATCTCCAC+TGG | - | chr3.3:80046321-80046340 | None:intergenic | 35.0% | |
| ! | ACAAAAGCCCAAAAAGTATG+GGG | + | chr3.3:80045468-80045487 | MS.gene049264:CDS | 35.0% |
| ! | GACAAAAGCCCAAAAAGTAT+GGG | + | chr3.3:80045467-80045486 | MS.gene049264:CDS | 35.0% |
| ! | TACTGGTGTTAGATATGTTC+TGG | - | chr3.3:80045002-80045021 | None:intergenic | 35.0% |
| ! | TTTTCTTCAGTCTCATCACT+TGG | + | chr3.3:80043887-80043906 | MS.gene049264:CDS | 35.0% |
| !! | GAAAGTTCCCCATACTTTTT+GGG | - | chr3.3:80045478-80045497 | None:intergenic | 35.0% |
| !!! | CAAAAGGTACTTTTTGAGAC+AGG | + | chr3.3:80043751-80043770 | MS.gene049264:intron | 35.0% |
| !!! | TGCTTTTTCCTTCTGAGAAA+TGG | - | chr3.3:80045363-80045382 | None:intergenic | 35.0% |
| ACCAAGGCCAATAAAGGAAT+AGG | - | chr3.3:80045280-80045299 | None:intergenic | 40.0% | |
| AGATTGTAGGGTTGAAAACC+AGG | - | chr3.3:80046165-80046184 | None:intergenic | 40.0% | |
| ATAACAGCAGTTGTAGGATC+AGG | + | chr3.3:80043802-80043821 | MS.gene049264:CDS | 40.0% | |
| CAATAGTGTTTGGGCTTAAG+TGG | - | chr3.3:80045621-80045640 | None:intergenic | 40.0% | |
| CACAAGGTGAATTACGATAG+CGG | - | chr3.3:80046043-80046062 | None:intergenic | 40.0% | |
| GAATACCGAATTCCAATTCC+TGG | + | chr3.3:80046144-80046163 | MS.gene049264:CDS | 40.0% | |
| GACAGAAAATGGATCCTTCA+AGG | + | chr3.3:80045413-80045432 | MS.gene049264:intron | 40.0% | |
| GATCACTCACATCATGCTAA+TGG | - | chr3.3:80044450-80044469 | None:intergenic | 40.0% | |
| GATGAGACAGGGCAATAAAA+AGG | + | chr3.3:80045097-80045116 | MS.gene049264:intron | 40.0% | |
| GCAATAGGATACACAATTGC+GGG | + | chr3.3:80044422-80044441 | MS.gene049264:CDS | 40.0% | |
| GCTATCGTAATTCACCTTGT+GGG | + | chr3.3:80046042-80046061 | MS.gene049264:CDS | 40.0% | |
| GTACTGAACTATCCCACAAA+GGG | - | chr3.3:80044384-80044403 | None:intergenic | 40.0% | |
| GTTTCAATGACACCCTTTGT+GGG | + | chr3.3:80044369-80044388 | MS.gene049264:CDS | 40.0% | |
| TAGGGTTGAAAACCAGGAAT+TGG | - | chr3.3:80046159-80046178 | None:intergenic | 40.0% | |
| TATATGCTTTGTGGCTGCAT+GGG | + | chr3.3:80045934-80045953 | MS.gene049264:CDS | 40.0% | |
| TATCAGTTGTGGCTGTTGTT+GGG | + | chr3.3:80046409-80046428 | MS.gene049264:CDS | 40.0% | |
| TCACACGCTTGTACTTGATT+TGG | + | chr3.3:80044280-80044299 | MS.gene049264:intron | 40.0% | |
| TGTACTGAACTATCCCACAA+AGG | - | chr3.3:80044385-80044404 | None:intergenic | 40.0% | |
| TTATATGCTTTGTGGCTGCA+TGG | + | chr3.3:80045933-80045952 | MS.gene049264:CDS | 40.0% | |
| TTCCAATGCTTACTCCTGTA+AGG | - | chr3.3:80045443-80045462 | None:intergenic | 40.0% | |
| TTCTCGACGAAAGCAAAGAA+GGG | - | chr3.3:80046090-80046109 | None:intergenic | 40.0% | |
| TTTCTCGACGAAAGCAAAGA+AGG | - | chr3.3:80046091-80046110 | None:intergenic | 40.0% | |
| ! | ACCTATTCCTTTATTGGCCT+TGG | + | chr3.3:80045276-80045295 | MS.gene049264:CDS | 40.0% |
| ! | GGAAAGTTCCCCATACTTTT+TGG | - | chr3.3:80045479-80045498 | None:intergenic | 40.0% |
| !! | TGGTACCTGTTCTTTTGAGA+CGG | - | chr3.3:80043591-80043610 | None:intergenic | 40.0% |
| !!! | AAACTGGTTTTGGATGAGAC+AGG | + | chr3.3:80045085-80045104 | MS.gene049264:intron | 40.0% |
| !!! | AACTGGTTTTGGATGAGACA+GGG | + | chr3.3:80045086-80045105 | MS.gene049264:intron | 40.0% |
| !!! | GGATTTTTTATGGTGTCCTG+TGG | - | chr3.3:80045850-80045869 | None:intergenic | 40.0% |
| !!! | GGTACTTTTTGAGACAGGAA+CGG | + | chr3.3:80043756-80043775 | MS.gene049264:intron | 40.0% |
| !!! | TTTTTGAGACAGGAACGGTT+TGG | + | chr3.3:80043761-80043780 | MS.gene049264:intron | 40.0% |
| AGCCTTACAGGAGTAAGCAT+TGG | + | chr3.3:80045438-80045457 | MS.gene049264:CDS | 45.0% | |
| ATACTTGGTATGCTCCCACA+AGG | - | chr3.3:80046059-80046078 | None:intergenic | 45.0% | |
| ATTCCAGTGAGTAAGTTCCC+TGG | - | chr3.3:80045985-80046004 | None:intergenic | 45.0% | |
| CGAATTGGCGATCCTCATTA+CGG | + | chr3.3:80043940-80043959 | MS.gene049264:CDS | 45.0% | |
| CGCTATCGTAATTCACCTTG+TGG | + | chr3.3:80046041-80046060 | MS.gene049264:CDS | 45.0% | |
| GAAGCTGTTCACACCATTCT+GGG | + | chr3.3:80043985-80044004 | MS.gene049264:CDS | 45.0% | |
| GATGACCGTCTCAAAAGAAC+AGG | + | chr3.3:80043583-80043602 | MS.gene049264:CDS | 45.0% | |
| GGTTTCAATGACACCCTTTG+TGG | + | chr3.3:80044368-80044387 | MS.gene049264:CDS | 45.0% | |
| GTATCAGTTGTGGCTGTTGT+TGG | + | chr3.3:80046408-80046427 | MS.gene049264:CDS | 45.0% | |
| GTTTGGGCTTAAGTGGGTAT+TGG | - | chr3.3:80045614-80045633 | None:intergenic | 45.0% | |
| TCTGACTGTTTGCATTCCTC+AGG | + | chr3.3:80045120-80045139 | MS.gene049264:CDS | 45.0% | |
| TGCTAGACCAAGGCCAATAA+AGG | - | chr3.3:80045286-80045305 | None:intergenic | 45.0% | |
| TGGGATTACTTGGAGCAGTA+GGG | + | chr3.3:80046271-80046290 | MS.gene049264:CDS | 45.0% | |
| TTGGGATTACTTGGAGCAGT+AGG | + | chr3.3:80046270-80046289 | MS.gene049264:CDS | 45.0% | |
| ! | ACATGAGTCTTTTCCTCCTG+AGG | - | chr3.3:80045139-80045158 | None:intergenic | 45.0% |
| ! | TACTTGGAGCAGTAGGGTTT+TGG | + | chr3.3:80046277-80046296 | MS.gene049264:CDS | 45.0% |
| ! | TGCATGGGTTATGCAGCATT+TGG | + | chr3.3:80045949-80045968 | MS.gene049264:CDS | 45.0% |
| !! | AGGAGTGTTGTCGTTAGCAT+GGG | + | chr3.3:80043822-80043841 | MS.gene049264:CDS | 45.0% |
| !!! | TTATTTATTGATTTAATAAA+GGG | - | chr3.3:80044922-80044941 | None:intergenic | 5.0% |
| !!! | TTTATTTATTGATTTAATAA+AGG | - | chr3.3:80044923-80044942 | None:intergenic | 5.0% |
| AGAAGGGTTGCGCGTATACT+TGG | - | chr3.3:80046074-80046093 | None:intergenic | 50.0% | |
| AGCATGGGCAATAGCTCAGT+TGG | + | chr3.3:80043837-80043856 | MS.gene049264:CDS | 50.0% | |
| AGGCTATGTTGCCAAGAGCT+TGG | - | chr3.3:80045500-80045519 | None:intergenic | 50.0% | |
| CATTTGGAGACACAGCACCA+GGG | + | chr3.3:80045965-80045984 | MS.gene049264:CDS | 50.0% | |
| CTAGCAGTTGCCAAAGTTGC+AGG | + | chr3.3:80045300-80045319 | MS.gene049264:CDS | 50.0% | |
| CTTTGGCAACTGCTAGACCA+AGG | - | chr3.3:80045296-80045315 | None:intergenic | 50.0% | |
| GACTGTTTGCATTCCTCAGG+AGG | + | chr3.3:80045123-80045142 | MS.gene049264:CDS | 50.0% | |
| GCATGGGCAATAGCTCAGTT+GGG | + | chr3.3:80043838-80043857 | MS.gene049264:CDS | 50.0% | |
| GGAAGCTGTTCACACCATTC+TGG | + | chr3.3:80043984-80044003 | MS.gene049264:CDS | 50.0% | |
| GGCAATAGCTCAGTTGGGTT+GGG | + | chr3.3:80043843-80043862 | MS.gene049264:CDS | 50.0% | |
| TCCTGTAAGGCTACCCTTGA+AGG | - | chr3.3:80045430-80045449 | None:intergenic | 50.0% | |
| TGGGGAACTTTCCAAGCTCT+TGG | + | chr3.3:80045486-80045505 | MS.gene049264:CDS | 50.0% | |
| ! | TCCTTCAAGGGTAGCCTTAC+AGG | + | chr3.3:80045426-80045445 | MS.gene049264:CDS | 50.0% |
| !! | CAGGAGTGTTGTCGTTAGCA+TGG | + | chr3.3:80043821-80043840 | MS.gene049264:CDS | 50.0% |
| !! | GCTCAGTTGGGTTGGGTAAT+TGG | + | chr3.3:80043850-80043869 | MS.gene049264:CDS | 50.0% |
| GCACCAGGGAACTTACTCAC+TGG | + | chr3.3:80045979-80045998 | MS.gene049264:CDS | 55.0% | |
| GCATTTGGAGACACAGCACC+AGG | + | chr3.3:80045964-80045983 | MS.gene049264:CDS | 55.0% | |
| GGGCAATAGCTCAGTTGGGT+TGG | + | chr3.3:80043842-80043861 | MS.gene049264:CDS | 55.0% | |
| TGTGGCTGTTGTTGGGTCAG+TGG | + | chr3.3:80046416-80046435 | MS.gene049264:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 80043517 | 80046491 | 80043517 | ID=MS.gene049264 |
| chr3.3 | mRNA | 80043517 | 80046491 | 80043517 | ID=MS.gene049264.t1;Parent=MS.gene049264 |
| chr3.3 | exon | 80043517 | 80043604 | 80043517 | ID=MS.gene049264.t1.exon1;Parent=MS.gene049264.t1 |
| chr3.3 | CDS | 80043517 | 80043604 | 80043517 | ID=cds.MS.gene049264.t1;Parent=MS.gene049264.t1 |
| chr3.3 | exon | 80043773 | 80044006 | 80043773 | ID=MS.gene049264.t1.exon2;Parent=MS.gene049264.t1 |
| chr3.3 | CDS | 80043773 | 80044006 | 80043773 | ID=cds.MS.gene049264.t1;Parent=MS.gene049264.t1 |
| chr3.3 | exon | 80044366 | 80044459 | 80044366 | ID=MS.gene049264.t1.exon3;Parent=MS.gene049264.t1 |
| chr3.3 | CDS | 80044366 | 80044459 | 80044366 | ID=cds.MS.gene049264.t1;Parent=MS.gene049264.t1 |
| chr3.3 | exon | 80045107 | 80045321 | 80045107 | ID=MS.gene049264.t1.exon4;Parent=MS.gene049264.t1 |
| chr3.3 | CDS | 80045107 | 80045321 | 80045107 | ID=cds.MS.gene049264.t1;Parent=MS.gene049264.t1 |
| chr3.3 | exon | 80045418 | 80045557 | 80045418 | ID=MS.gene049264.t1.exon5;Parent=MS.gene049264.t1 |
| chr3.3 | CDS | 80045418 | 80045557 | 80045418 | ID=cds.MS.gene049264.t1;Parent=MS.gene049264.t1 |
| chr3.3 | exon | 80045853 | 80046491 | 80045853 | ID=MS.gene049264.t1.exon6;Parent=MS.gene049264.t1 |
| chr3.3 | CDS | 80045853 | 80046491 | 80045853 | ID=cds.MS.gene049264.t1;Parent=MS.gene049264.t1 |
| Gene Sequence |
| Protein sequence |
