Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052746.t1 | XP_003604630.1 | 99.1 | 461 | 4 | 0 | 439 | 899 | 50 | 510 | 9.80E-261 | 909.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052746.t1 | Q8S4F6 | 71.4 | 433 | 122 | 1 | 467 | 897 | 75 | 507 | 1.5e-180 | 634.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052746.t1 | G7JN01 | 99.1 | 461 | 4 | 0 | 439 | 899 | 50 | 510 | 7.1e-261 | 909.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052746 | MS.gene056638 | 0.80164 | 8.19E-49 | -1.69E-46 |
| MS.gene052746 | MS.gene062804 | 0.800993 | 1.11E-48 | -1.69E-46 |
| MS.gene052746 | MS.gene065949 | 0.80502 | 1.63E-49 | -1.69E-46 |
| MS.gene052746 | MS.gene20392 | 0.819063 | 1.41E-52 | -1.69E-46 |
| MS.gene052746 | MS.gene30808 | 0.801958 | 7.04E-49 | -1.69E-46 |
| MS.gene052746 | MS.gene33483 | 0.89374 | 4.74E-75 | -1.69E-46 |
| MS.gene052746 | MS.gene89902 | 0.889308 | 2.72E-73 | -1.69E-46 |
| MS.gene052746 | MS.gene97896 | 0.810704 | 1.01E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052746.t1 | MTR_4g015260 | 99.132 | 461 | 4 | 0 | 439 | 899 | 50 | 510 | 0.0 | 950 |
| MS.gene052746.t1 | MTR_4g015260 | 98.933 | 375 | 4 | 0 | 525 | 899 | 1 | 375 | 0.0 | 775 |
| MS.gene052746.t1 | MTR_7g067340 | 76.809 | 470 | 99 | 1 | 439 | 898 | 43 | 512 | 0.0 | 748 |
| MS.gene052746.t1 | MTR_1148s0010 | 54.225 | 142 | 64 | 1 | 1 | 142 | 213 | 353 | 1.24e-44 | 171 |
| MS.gene052746.t1 | MTR_1148s0010 | 39.394 | 99 | 59 | 1 | 358 | 456 | 475 | 572 | 4.15e-12 | 70.5 |
| MS.gene052746.t1 | MTR_6g024400 | 49.650 | 143 | 72 | 0 | 1 | 143 | 316 | 458 | 2.29e-42 | 165 |
| MS.gene052746.t1 | MTR_6g024400 | 35.659 | 129 | 78 | 2 | 341 | 467 | 489 | 614 | 3.50e-13 | 73.9 |
| MS.gene052746.t1 | MTR_6g048830 | 46.259 | 147 | 72 | 3 | 1 | 143 | 113 | 256 | 1.89e-39 | 148 |
| MS.gene052746.t1 | MTR_6g054900 | 48.837 | 129 | 61 | 2 | 2 | 125 | 105 | 233 | 1.75e-36 | 139 |
| MS.gene052746.t1 | MTR_8g103960 | 41.722 | 151 | 68 | 3 | 2 | 147 | 1 | 136 | 1.40e-35 | 132 |
| MS.gene052746.t1 | MTR_0073s0040 | 45.775 | 142 | 77 | 0 | 2 | 143 | 133 | 274 | 4.09e-35 | 137 |
| MS.gene052746.t1 | MTR_5g073130 | 43.796 | 137 | 77 | 0 | 2 | 138 | 227 | 363 | 1.59e-33 | 134 |
| MS.gene052746.t1 | MTR_6g053340 | 57.143 | 105 | 45 | 0 | 3 | 107 | 169 | 273 | 3.27e-33 | 130 |
| MS.gene052746.t1 | MTR_8g045280 | 63.725 | 102 | 36 | 1 | 1 | 101 | 444 | 545 | 8.88e-33 | 137 |
| MS.gene052746.t1 | MTR_8g045280 | 46.078 | 102 | 50 | 2 | 337 | 437 | 645 | 742 | 4.07e-17 | 87.0 |
| MS.gene052746.t1 | MTR_4g027930 | 50.962 | 104 | 36 | 1 | 1 | 104 | 79 | 167 | 4.82e-29 | 116 |
| MS.gene052746.t1 | MTR_7g083690 | 41.791 | 134 | 77 | 1 | 3 | 135 | 251 | 384 | 1.54e-26 | 117 |
| MS.gene052746.t1 | MTR_4g005250 | 51.136 | 88 | 43 | 0 | 3 | 90 | 273 | 360 | 2.10e-26 | 112 |
| MS.gene052746.t1 | MTR_6g033695 | 44.000 | 125 | 57 | 3 | 39 | 161 | 453 | 566 | 2.90e-25 | 112 |
| MS.gene052746.t1 | MTR_6g033695 | 43.564 | 101 | 54 | 1 | 337 | 437 | 628 | 725 | 1.56e-17 | 88.2 |
| MS.gene052746.t1 | MTR_8g058470 | 41.176 | 102 | 60 | 0 | 3 | 104 | 68 | 169 | 5.09e-24 | 108 |
| MS.gene052746.t1 | MTR_7g108760 | 41.176 | 102 | 60 | 0 | 3 | 104 | 68 | 169 | 5.52e-24 | 107 |
| MS.gene052746.t1 | MTR_4g061490 | 57.143 | 70 | 30 | 0 | 11 | 80 | 358 | 427 | 2.96e-23 | 105 |
| MS.gene052746.t1 | MTR_3g049960 | 39.355 | 155 | 65 | 6 | 20 | 162 | 259 | 396 | 2.27e-22 | 102 |
| MS.gene052746.t1 | MTR_3g048390 | 37.500 | 128 | 74 | 1 | 12 | 139 | 264 | 385 | 1.18e-21 | 99.8 |
| MS.gene052746.t1 | MTR_5g054740 | 59.722 | 72 | 29 | 0 | 3 | 74 | 487 | 558 | 1.28e-21 | 101 |
| MS.gene052746.t1 | MTR_2g060030 | 47.000 | 100 | 47 | 2 | 1 | 99 | 403 | 497 | 2.99e-20 | 97.1 |
| MS.gene052746.t1 | MTR_5g053650 | 36.066 | 122 | 72 | 2 | 7 | 122 | 84 | 205 | 1.20e-19 | 92.4 |
| MS.gene052746.t1 | MTR_0031s0120 | 37.736 | 106 | 52 | 1 | 3 | 108 | 232 | 323 | 1.29e-18 | 89.4 |
| MS.gene052746.t1 | MTR_0242s0010 | 31.944 | 144 | 57 | 2 | 1 | 144 | 392 | 494 | 9.51e-17 | 85.1 |
| MS.gene052746.t1 | MTR_1g062580 | 46.739 | 92 | 40 | 2 | 55 | 142 | 442 | 528 | 1.40e-16 | 85.1 |
| MS.gene052746.t1 | MTR_4g015250 | 68.000 | 50 | 11 | 1 | 842 | 886 | 1 | 50 | 1.46e-16 | 75.5 |
| MS.gene052746.t1 | MTR_1g061220 | 38.136 | 118 | 68 | 2 | 337 | 453 | 2301 | 2414 | 3.35e-16 | 84.3 |
| MS.gene052746.t1 | MTR_2g438380 | 50.877 | 57 | 28 | 0 | 49 | 105 | 27 | 83 | 7.02e-15 | 70.9 |
| MS.gene052746.t1 | MTR_5g048260 | 44.643 | 56 | 31 | 0 | 3 | 58 | 180 | 235 | 1.24e-14 | 74.7 |
| MS.gene052746.t1 | MTR_5g021380 | 27.679 | 224 | 120 | 4 | 1 | 223 | 208 | 390 | 3.70e-14 | 77.4 |
| MS.gene052746.t1 | MTR_2g067560 | 47.945 | 73 | 38 | 0 | 364 | 436 | 689 | 761 | 2.26e-12 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052746.t1 | AT5G01220 | 74.596 | 433 | 108 | 1 | 467 | 897 | 75 | 507 | 0.0 | 695 |
| MS.gene052746.t1 | AT5G01220 | 76.420 | 352 | 81 | 1 | 467 | 816 | 75 | 426 | 0.0 | 571 |
Find 174 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAATTACAATACTGCTATT+TGG | 0.201513 | 4.4:+85411908 | MS.gene052746:CDS |
| TTGAGACTTCACATGTTTCT+TGG | 0.219330 | 4.4:-85399758 | None:intergenic |
| GAAGATCAAGACGGCAAAAT+TGG | 0.254160 | 4.4:+85411733 | MS.gene052746:CDS |
| TAGCTAAGTCTTTGACAATT+TGG | 0.254613 | 4.4:-85399711 | None:intergenic |
| CATTAAAATCGTGGAAGAAT+TGG | 0.257567 | 4.4:+85399564 | MS.gene052746:CDS |
| CATGCTGCTGTGTCATCTTC+TGG | 0.264643 | 4.4:+85400075 | MS.gene052746:CDS |
| ACAATACTGCTATTTGGTTT+TGG | 0.272252 | 4.4:+85411914 | MS.gene052746:CDS |
| TGATCTTCAGTGATTATGTC+TGG | 0.298230 | 4.4:-85411718 | None:intergenic |
| CTTGCTGCTGTGTCATCTTC+TGG | 0.307675 | 4.4:+85399790 | MS.gene052746:CDS |
| TCCGGTGCTTACTCTGAAAA+AGG | 0.318681 | 4.4:+85400548 | MS.gene052746:CDS |
| GTCTCAGAGGCCCTATCTTC+AGG | 0.319836 | 4.4:+85411661 | MS.gene052746:CDS |
| TATAAAGTACCTTCGAGAAA+TGG | 0.321891 | 4.4:+85408143 | MS.gene052746:CDS |
| ATTAAAATCGTGGAAGAATT+GGG | 0.323455 | 4.4:+85399565 | MS.gene052746:CDS |
| ATGAAAGAAACTCACGAAAA+AGG | 0.328278 | 4.4:-85406916 | None:intergenic |
| GGAGCTTGGGTCCGAGGTTA+TGG | 0.329322 | 4.4:+85399352 | MS.gene052746:CDS |
| CAGCTAACAAGATCCGTCTT+TGG | 0.335760 | 4.4:+85410240 | MS.gene052746:intron |
| GAACAACCATGTTGATATAT+TGG | 0.341896 | 4.4:+85399684 | MS.gene052746:CDS |
| AATTTCTACGCCATCATTAG+AGG | 0.342406 | 4.4:+85399495 | MS.gene052746:CDS |
| AGCTCAGCCGTGACAGCATT+AGG | 0.348564 | 4.4:-85399934 | None:intergenic |
| ACAATAGCGATTCGTGCTTC+AGG | 0.349145 | 4.4:-85410922 | None:intergenic |
| CGCATCATCACCTGGCATAA+TGG | 0.349858 | 4.4:+85409001 | MS.gene052746:CDS |
| ATTTCATGTGACTTGTACTT+AGG | 0.354414 | 4.4:-85410293 | None:intergenic |
| TCTGATCAAATTATCGTTGA+TGG | 0.357484 | 4.4:+85399529 | MS.gene052746:CDS |
| AATGTACAACACGGTGATAT+TGG | 0.359269 | 4.4:+85400411 | MS.gene052746:CDS |
| TTCCTAGATACACATTTAGT+TGG | 0.367508 | 4.4:+85409643 | MS.gene052746:CDS |
| GTCGAACCGTTCTCTATTCA+AGG | 0.378448 | 4.4:-85399458 | None:intergenic |
| CAACAGGAATCCCTGAAGAT+AGG | 0.378960 | 4.4:-85411672 | None:intergenic |
| GATTCAGAACTGCACTGCTT+TGG | 0.379651 | 4.4:+85399861 | MS.gene052746:CDS |
| GCTTCAGAACTGCACTGCTT+TGG | 0.381947 | 4.4:+85400149 | MS.gene052746:CDS |
| TCAATTACCTATACAACTTC+GGG | 0.383739 | 4.4:-85412000 | None:intergenic |
| GCATCATTATTTCCCAAAAC+AGG | 0.387223 | 4.4:-85399970 | None:intergenic |
| CAAGTTCGGAAGCAAGAAAA+TGG | 0.394249 | 4.4:+85400491 | MS.gene052746:CDS |
| TGTGCTCCATAAAATTCTTT+CGG | 0.394473 | 4.4:-85408411 | None:intergenic |
| ACCTCTTCTCTATCTTTACT+TGG | 0.399378 | 4.4:-85400582 | None:intergenic |
| ATTATTCATGTTGGGCGTCT+TGG | 0.399379 | 4.4:+85410435 | MS.gene052746:CDS |
| TGAATAATCAAGGGCTTCTC+TGG | 0.401493 | 4.4:-85410420 | None:intergenic |
| TCTCAGAGGCCCTATCTTCA+GGG | 0.414826 | 4.4:+85411662 | MS.gene052746:CDS |
| AGCCCTTGATTATTCATGTT+GGG | 0.416627 | 4.4:+85410427 | MS.gene052746:CDS |
| ATAAAGTACCTTCGAGAAAT+GGG | 0.417934 | 4.4:+85408144 | MS.gene052746:CDS |
| TTATTTCCCAAAACAGGTGC+TGG | 0.418369 | 4.4:-85399964 | None:intergenic |
| ATATCATTCAAAACAGAATC+AGG | 0.424694 | 4.4:-85406850 | None:intergenic |
| AGGCGGCGTGCTTCGACATC+CGG | 0.426525 | 4.4:+85400530 | MS.gene052746:CDS |
| AAAAGCCGCGCGTATAGAAA+TGG | 0.427629 | 4.4:+85411843 | MS.gene052746:CDS |
| CCGGCACGTGCTCCCACAAC+AGG | 0.431772 | 4.4:-85411688 | None:intergenic |
| ATCTTCAGGGATTCCTGTTG+TGG | 0.434726 | 4.4:+85411675 | MS.gene052746:CDS |
| AGTATCCGGACTTGAGGATT+CGG | 0.437175 | 4.4:-85399635 | None:intergenic |
| TCATGAATGTCTTCAGTATC+CGG | 0.437367 | 4.4:-85399649 | None:intergenic |
| AACCGAATGGAAAGCATTGT+TGG | 0.439439 | 4.4:-85400112 | None:intergenic |
| GAAGCACGAATCGCTATTGT+TGG | 0.443160 | 4.4:+85410925 | MS.gene052746:CDS |
| CACAATTAATTGGATCCAAA+AGG | 0.443175 | 4.4:+85408430 | MS.gene052746:CDS |
| GAAGAATTGGGGATTAATCT+AGG | 0.443616 | 4.4:+85399577 | MS.gene052746:CDS |
| AAATATGTTTCGTTAGCCAT+TGG | 0.444300 | 4.4:-85411969 | None:intergenic |
| TTAAATCTTGATGTTGATAA+CGG | 0.447172 | 4.4:+85400294 | MS.gene052746:CDS |
| TTCAATTACCTATACAACTT+CGG | 0.448232 | 4.4:-85412001 | None:intergenic |
| TCCCAACAATGCTTTCCATT+CGG | 0.457259 | 4.4:+85400110 | MS.gene052746:CDS |
| TCCTTGTCCTAATGCTGCCT+CGG | 0.457430 | 4.4:+85400215 | MS.gene052746:CDS |
| AGCACAACCGAGGCAGCATT+AGG | 0.462706 | 4.4:-85400222 | None:intergenic |
| GATCTTCAGTGATTATGTCT+GGG | 0.464038 | 4.4:-85411717 | None:intergenic |
| AGCAACAGTGGTAACAAGTT+CGG | 0.469134 | 4.4:+85400477 | MS.gene052746:CDS |
| GAAACATGTGAAGTCTCAAA+TGG | 0.473781 | 4.4:+85399762 | MS.gene052746:CDS |
| ACCCAAGCTCCTCTTTGAAA+AGG | 0.475056 | 4.4:-85399340 | None:intergenic |
| ATGTAACTTACACTGGTACA+TGG | 0.476399 | 4.4:-85409355 | None:intergenic |
| TCTTCAGGGATTCCTGTTGT+GGG | 0.476531 | 4.4:+85411676 | MS.gene052746:CDS |
| ACCGAATGGAAAGCATTGTT+GGG | 0.479581 | 4.4:-85400111 | None:intergenic |
| GCAACCGCTGAAATTATTCT+CGG | 0.493591 | 4.4:-85408954 | None:intergenic |
| AACATTCCTGTGAAAACTAC+AGG | 0.493872 | 4.4:-85411556 | None:intergenic |
| ACCTTCTGATACCAAGGAAA+AGG | 0.494486 | 4.4:-85408909 | None:intergenic |
| CCTGTTGTGGGAGCACGTGC+CGG | 0.495248 | 4.4:+85411688 | MS.gene052746:CDS |
| AGCCAACTAAATGTGTATCT+AGG | 0.495411 | 4.4:-85409645 | None:intergenic |
| AATGGAGAAGTATGACTGGA+GGG | 0.497567 | 4.4:+85411861 | MS.gene052746:CDS |
| CGACGATGTCTGTCTTTATG+AGG | 0.500492 | 4.4:+85399600 | MS.gene052746:CDS |
| AACAGGAATCCCTGAAGATA+GGG | 0.501178 | 4.4:-85411671 | None:intergenic |
| TGCTTTGGAAGGATCCCTTA+CGG | 0.502741 | 4.4:+85399876 | MS.gene052746:CDS |
| ACGCCCAACATGAATAATCA+AGG | 0.504182 | 4.4:-85410430 | None:intergenic |
| GAAAGTTCTTAGAAATTCAA+AGG | 0.504335 | 4.4:+85400608 | MS.gene052746:CDS |
| GTTGTGAGGTCTTTAAGATC+AGG | 0.508341 | 4.4:+85400363 | MS.gene052746:CDS |
| ATGGAATTCCTTTACAAGCA+TGG | 0.509366 | 4.4:+85399371 | MS.gene052746:CDS |
| CCTATACAACTTCGGGAGAC+GGG | 0.510470 | 4.4:-85411993 | None:intergenic |
| CTAGTGCCATCCGTTGCCAT+TGG | 0.511144 | 4.4:+85409840 | MS.gene052746:CDS |
| CAGAACTGCACTGCTTTGGA+AGG | 0.513361 | 4.4:+85400153 | MS.gene052746:CDS |
| GAAGAAGCTAGAGTAACAAC+AGG | 0.518580 | 4.4:+85409873 | MS.gene052746:CDS |
| ACCTATACAACTTCGGGAGA+CGG | 0.521685 | 4.4:-85411994 | None:intergenic |
| CAGAACTGCACTGCTTTGGA+AGG | 0.521848 | 4.4:+85399865 | MS.gene052746:CDS |
| TAAATCCGAATCCTCAAGTC+CGG | 0.524718 | 4.4:+85399630 | MS.gene052746:CDS |
| GTATTCAACACCTCTAATGA+TGG | 0.527603 | 4.4:-85399505 | None:intergenic |
| GTATGATATGACATAACAAT+GGG | 0.528218 | 4.4:-85409332 | None:intergenic |
| CAAGATCCGTCTTTGGAACA+AGG | 0.529732 | 4.4:+85410247 | MS.gene052746:CDS |
| AAATTCAAACAATGTCCAAT+CGG | 0.530431 | 4.4:+85399822 | MS.gene052746:CDS |
| TAGGACTGGGAAGTGATGAC+AGG | 0.530485 | 4.4:-85399915 | None:intergenic |
| AAGCCCTTGATTATTCATGT+TGG | 0.533594 | 4.4:+85410426 | MS.gene052746:CDS |
| ATTGGATATCTCTACACTCC+AGG | 0.535829 | 4.4:+85411751 | MS.gene052746:CDS |
| CAGGTCCGTGGAGTGTGGAT+TGG | 0.536026 | 4.4:+85400382 | MS.gene052746:CDS |
| TTCAGAGTATGTTACCTGTA+GGG | 0.538916 | 4.4:-85410955 | None:intergenic |
| TTGTTGGAGATGGTCCCTAC+AGG | 0.540529 | 4.4:+85410941 | MS.gene052746:CDS |
| TGCAAACATACCATTATGCC+AGG | 0.542884 | 4.4:-85409011 | None:intergenic |
| CAAAGAGGAGCTTGGGTCCG+AGG | 0.542919 | 4.4:+85399346 | MS.gene052746:CDS |
| AACTATTGTTACCGTTCCAA+TGG | 0.544153 | 4.4:+85411953 | MS.gene052746:CDS |
| CGGACTAAGTGCCAAGGAGA+GGG | 0.545703 | 4.4:-85408934 | None:intergenic |
| AAGCAATCGTTGAGATCACC+TGG | 0.546774 | 4.4:-85411769 | None:intergenic |
| AGCCGTGACAGCATTAGGAC+TGG | 0.547712 | 4.4:-85399929 | None:intergenic |
| GCCGTGACAGCATTAGGACT+GGG | 0.550472 | 4.4:-85399928 | None:intergenic |
| TAAGAAGCGACTGAAGAAAG+TGG | 0.550877 | 4.4:+85400449 | MS.gene052746:CDS |
| GACAACTTGACCAAGTGTCT+CGG | 0.550994 | 4.4:-85411641 | None:intergenic |
| CGCAGAGTTGAGAGAAACGA+TGG | 0.551118 | 4.4:+85411819 | MS.gene052746:CDS |
| TGTAACTTACACTGGTACAT+GGG | 0.551422 | 4.4:-85409354 | None:intergenic |
| GTCTTCAGTATCCGGACTTG+AGG | 0.551752 | 4.4:-85399641 | None:intergenic |
| GATGATGCGTGTATTATGTC+AGG | 0.553406 | 4.4:-85408987 | None:intergenic |
| TCAGCCAACGTCGAGTTCAT+CGG | 0.553417 | 4.4:+85400338 | MS.gene052746:CDS |
| TCAGAAGGTACCCCTCTCCT+TGG | 0.553771 | 4.4:+85408923 | MS.gene052746:CDS |
| CGAATCGCTATTGTTGGAGA+TGG | 0.555199 | 4.4:+85410931 | MS.gene052746:CDS |
| TCCCAGTCCTAATGCTGTCA+CGG | 0.558713 | 4.4:+85399927 | MS.gene052746:CDS |
| CACACGACTTTGCAGTGTCA+TGG | 0.562589 | 4.4:+85410891 | MS.gene052746:intron |
| CCGTCAGAGTCCGAGACACT+TGG | 0.566913 | 4.4:+85411631 | MS.gene052746:CDS |
| TAGAAATGGAGAAGTATGAC+TGG | 0.568964 | 4.4:+85411857 | MS.gene052746:CDS |
| CGAGTTCATCGGACGTTGTG+AGG | 0.569284 | 4.4:+85400349 | MS.gene052746:CDS |
| TTGAAATAGAGTCAACCGAT+TGG | 0.570348 | 4.4:-85399837 | None:intergenic |
| GCTAGTGCAACCAATGTGGT+TGG | 0.577453 | 4.4:+85409665 | MS.gene052746:CDS |
| ATAATACACGCATCATCACC+TGG | 0.577775 | 4.4:+85408993 | MS.gene052746:CDS |
| AGGGGTACCTTCTGATACCA+AGG | 0.581471 | 4.4:-85408915 | None:intergenic |
| TTAAAATCGTGGAAGAATTG+GGG | 0.584885 | 4.4:+85399566 | MS.gene052746:CDS |
| AAGATCAGGTCCGTGGAGTG+TGG | 0.585709 | 4.4:+85400377 | MS.gene052746:CDS |
| TGCTTTGGAAGGACCCCATA+CGG | 0.588972 | 4.4:+85400164 | MS.gene052746:CDS |
| GGTATGATATGACATAACAA+TGG | 0.590253 | 4.4:-85409333 | None:intergenic |
| GACGTTGAACATTAAAATCG+TGG | 0.592319 | 4.4:+85399555 | MS.gene052746:CDS |
| TGTAACCAATCCACACTCCA+CGG | 0.595184 | 4.4:-85400387 | None:intergenic |
| GACTTTGCAGTGTCATGGAT+AGG | 0.595761 | 4.4:+85410896 | MS.gene052746:intron |
| CTGCTGTGTCATCTTCTGGA+CGG | 0.597139 | 4.4:+85399794 | MS.gene052746:CDS |
| ATTGTTCCTTGAATAGAGAA+CGG | 0.597438 | 4.4:+85399452 | MS.gene052746:CDS |
| CCTCATCTCCCATTTCTCGA+AGG | 0.599834 | 4.4:-85408152 | None:intergenic |
| GTTGTGGGAGCACGTGCCGG+TGG | 0.600457 | 4.4:+85411691 | MS.gene052746:CDS |
| TATGTGTCATTGAATGCGGA+AGG | 0.602636 | 4.4:+85399413 | MS.gene052746:CDS |
| CAACACCCTTGTTCCAAAGA+CGG | 0.603176 | 4.4:-85410253 | None:intergenic |
| ATGCGGAAGGTATTTGAGAA+CGG | 0.604215 | 4.4:+85399426 | MS.gene052746:CDS |
| AAATGGAGAAGTATGACTGG+AGG | 0.604480 | 4.4:+85411860 | MS.gene052746:CDS |
| TTGAAATAGAGTCAACCGAA+TGG | 0.604605 | 4.4:-85400125 | None:intergenic |
| CCTTCGAGAAATGGGAGATG+AGG | 0.605105 | 4.4:+85408152 | MS.gene052746:CDS |
| AACTCTGCGTCATGCAACAG+AGG | 0.605719 | 4.4:-85411805 | None:intergenic |
| CGCCCAACATGAATAATCAA+GGG | 0.606295 | 4.4:-85410429 | None:intergenic |
| GAATTCTAGAGATGAAGAAG+AGG | 0.606553 | 4.4:+85406822 | MS.gene052746:CDS |
| GATTATGTCTGGGATTCCAC+CGG | 0.608023 | 4.4:-85411707 | None:intergenic |
| AAGAAGCGACTGAAGAAAGT+GGG | 0.611468 | 4.4:+85400450 | MS.gene052746:CDS |
| TATGGTTCGGTGGGATAAAG+CGG | 0.611632 | 4.4:+85399312 | None:intergenic |
| CTTCTCCATTTCTATACGCG+CGG | 0.612202 | 4.4:-85411848 | None:intergenic |
| ACCAAGTAAAGATAGAGAAG+AGG | 0.620098 | 4.4:+85400581 | MS.gene052746:CDS |
| TCGGACTAAGTGCCAAGGAG+AGG | 0.624278 | 4.4:-85408935 | None:intergenic |
| ATGGTCGTGACAACACATGA+AGG | 0.624957 | 4.4:+85408384 | MS.gene052746:CDS |
| GAAGATGACACAGCAGCAAG+TGG | 0.626605 | 4.4:-85399787 | None:intergenic |
| TATTCTCGGACTAAGTGCCA+AGG | 0.627907 | 4.4:-85408940 | None:intergenic |
| AAACTATGTGTCATTGAATG+CGG | 0.629048 | 4.4:+85399409 | MS.gene052746:CDS |
| TGTTTCGTTAGCCATTGGAA+CGG | 0.629285 | 4.4:-85411964 | None:intergenic |
| GTAAAGGAATTCCATAACCT+CGG | 0.632416 | 4.4:-85399363 | None:intergenic |
| TAGTCCGAGAATAATTTCAG+CGG | 0.636839 | 4.4:+85408950 | MS.gene052746:CDS |
| TTATCTCAAGCATATGCTAG+TGG | 0.642840 | 4.4:+85411592 | MS.gene052746:CDS |
| GGACTAAGTGCCAAGGAGAG+GGG | 0.646296 | 4.4:-85408933 | None:intergenic |
| ATACTTAGAACCAACCACAT+TGG | 0.648026 | 4.4:-85409675 | None:intergenic |
| CCAAGTGTCTCGGACTCTGA+CGG | 0.649173 | 4.4:-85411631 | None:intergenic |
| AATTCTAGAGATGAAGAAGA+GGG | 0.652792 | 4.4:+85406823 | MS.gene052746:CDS |
| GAAGATGACACAGCAGCATG+AGG | 0.654274 | 4.4:-85400072 | None:intergenic |
| GCAGAGTTGAGAGAAACGAT+GGG | 0.657502 | 4.4:+85411820 | MS.gene052746:CDS |
| AAGATCCGTCTTTGGAACAA+GGG | 0.660742 | 4.4:+85410248 | MS.gene052746:CDS |
| GGTCTTTAAGATCAGGTCCG+TGG | 0.665663 | 4.4:+85400370 | MS.gene052746:CDS |
| AGGACTGGGAAGTGATGACA+GGG | 0.666848 | 4.4:-85399914 | None:intergenic |
| AAAGTGGGCAAGAGCAACAG+TGG | 0.673912 | 4.4:+85400465 | MS.gene052746:CDS |
| ATGAAATGCGATTAAGACTG+AGG | 0.676913 | 4.4:+85410309 | MS.gene052746:CDS |
| AGGACAAGGAAGTGATGACA+AGG | 0.677280 | 4.4:-85400202 | None:intergenic |
| ACTTGGTCAAGTTGTCTCAG+AGG | 0.688021 | 4.4:+85411648 | MS.gene052746:CDS |
| ACGTCCGATGAACTCGACGT+TGG | 0.695519 | 4.4:-85400342 | None:intergenic |
| GGTCTGCCAATATATCAACA+TGG | 0.696028 | 4.4:-85399690 | None:intergenic |
| ACCGAGGCAGCATTAGGACA+AGG | 0.702710 | 4.4:-85400216 | None:intergenic |
| TCATTCAAAACAGAATCAGG+AGG | 0.706543 | 4.4:-85406847 | None:intergenic |
| GTTGGCTAGTGCAACCAATG+TGG | 0.714392 | 4.4:+85409661 | MS.gene052746:CDS |
| ATAATCACTGAAGATCAAGA+CGG | 0.723056 | 4.4:+85411724 | MS.gene052746:CDS |
| TGGTTACAAAATGTACAACA+CGG | 0.734382 | 4.4:+85400402 | MS.gene052746:CDS |
| TTTCACAGGAATGTTAAGCG+GGG | 0.737605 | 4.4:+85411564 | MS.gene052746:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 85399313 | 85412014 | 85399313 | ID=MS.gene052746 |
| chr4.4 | mRNA | 85399313 | 85412014 | 85399313 | ID=MS.gene052746.t1;Parent=MS.gene052746 |
| chr4.4 | exon | 85399313 | 85400629 | 85399313 | ID=MS.gene052746.t1.exon1;Parent=MS.gene052746.t1 |
| chr4.4 | CDS | 85399313 | 85400629 | 85399313 | ID=cds.MS.gene052746.t1;Parent=MS.gene052746.t1 |
| chr4.4 | exon | 85406724 | 85406923 | 85406724 | ID=MS.gene052746.t1.exon2;Parent=MS.gene052746.t1 |
| chr4.4 | CDS | 85406724 | 85406923 | 85406724 | ID=cds.MS.gene052746.t1;Parent=MS.gene052746.t1 |
| chr4.4 | exon | 85408107 | 85408173 | 85408107 | ID=MS.gene052746.t1.exon3;Parent=MS.gene052746.t1 |
| chr4.4 | CDS | 85408107 | 85408173 | 85408107 | ID=cds.MS.gene052746.t1;Parent=MS.gene052746.t1 |
| chr4.4 | exon | 85408381 | 85408451 | 85408381 | ID=MS.gene052746.t1.exon4;Parent=MS.gene052746.t1 |
| chr4.4 | CDS | 85408381 | 85408451 | 85408381 | ID=cds.MS.gene052746.t1;Parent=MS.gene052746.t1 |
| chr4.4 | exon | 85408905 | 85409022 | 85408905 | ID=MS.gene052746.t1.exon5;Parent=MS.gene052746.t1 |
| chr4.4 | CDS | 85408905 | 85409022 | 85408905 | ID=cds.MS.gene052746.t1;Parent=MS.gene052746.t1 |
| chr4.4 | exon | 85409293 | 85409366 | 85409293 | ID=MS.gene052746.t1.exon6;Parent=MS.gene052746.t1 |
| chr4.4 | CDS | 85409293 | 85409366 | 85409293 | ID=cds.MS.gene052746.t1;Parent=MS.gene052746.t1 |
| chr4.4 | exon | 85409638 | 85409693 | 85409638 | ID=MS.gene052746.t1.exon7;Parent=MS.gene052746.t1 |
| chr4.4 | CDS | 85409638 | 85409693 | 85409638 | ID=cds.MS.gene052746.t1;Parent=MS.gene052746.t1 |
| chr4.4 | exon | 85409811 | 85409894 | 85409811 | ID=MS.gene052746.t1.exon8;Parent=MS.gene052746.t1 |
| chr4.4 | CDS | 85409811 | 85409894 | 85409811 | ID=cds.MS.gene052746.t1;Parent=MS.gene052746.t1 |
| chr4.4 | exon | 85410243 | 85410330 | 85410243 | ID=MS.gene052746.t1.exon9;Parent=MS.gene052746.t1 |
| chr4.4 | CDS | 85410243 | 85410330 | 85410243 | ID=cds.MS.gene052746.t1;Parent=MS.gene052746.t1 |
| chr4.4 | exon | 85410410 | 85410487 | 85410410 | ID=MS.gene052746.t1.exon10;Parent=MS.gene052746.t1 |
| chr4.4 | CDS | 85410410 | 85410487 | 85410410 | ID=cds.MS.gene052746.t1;Parent=MS.gene052746.t1 |
| chr4.4 | exon | 85410906 | 85410962 | 85410906 | ID=MS.gene052746.t1.exon11;Parent=MS.gene052746.t1 |
| chr4.4 | CDS | 85410906 | 85410962 | 85410906 | ID=cds.MS.gene052746.t1;Parent=MS.gene052746.t1 |
| chr4.4 | exon | 85411525 | 85412014 | 85411525 | ID=MS.gene052746.t1.exon12;Parent=MS.gene052746.t1 |
| chr4.4 | CDS | 85411525 | 85412014 | 85411525 | ID=cds.MS.gene052746.t1;Parent=MS.gene052746.t1 |
| Gene Sequence |
| Protein sequence |
