Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055977.t1 | XP_003625289.1 | 98.2 | 282 | 5 | 0 | 1 | 282 | 1 | 282 | 1.60E-161 | 578.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055977.t1 | Q38910 | 75.8 | 273 | 64 | 1 | 9 | 279 | 11 | 283 | 5.2e-124 | 445.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055977.t1 | G7KW97 | 98.2 | 282 | 5 | 0 | 1 | 282 | 1 | 282 | 1.2e-161 | 578.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052083 | MS.gene055977 | 0.802227 | 6.20E-49 | -1.69E-46 |
| MS.gene052211 | MS.gene055977 | 0.805388 | 1.37E-49 | -1.69E-46 |
| MS.gene05240 | MS.gene055977 | 0.805398 | 1.36E-49 | -1.69E-46 |
| MS.gene055977 | MS.gene056748 | 0.802523 | 5.39E-49 | -1.69E-46 |
| MS.gene055977 | MS.gene056988 | 0.805092 | 1.58E-49 | -1.69E-46 |
| MS.gene055977 | MS.gene061044 | 0.802234 | 6.18E-49 | -1.69E-46 |
| MS.gene055977 | MS.gene061777 | 0.804238 | 2.38E-49 | -1.69E-46 |
| MS.gene055977 | MS.gene062950 | 0.813842 | 2.09E-51 | -1.69E-46 |
| MS.gene055977 | MS.gene063063 | 0.801622 | 8.26E-49 | -1.69E-46 |
| MS.gene055977 | MS.gene063954 | 0.809396 | 1.93E-50 | -1.69E-46 |
| MS.gene055977 | MS.gene065466 | 0.824901 | 6.28E-54 | -1.69E-46 |
| MS.gene055977 | MS.gene066130 | 0.8058 | 1.12E-49 | -1.69E-46 |
| MS.gene055977 | MS.gene066602 | 0.810405 | 1.17E-50 | -1.69E-46 |
| MS.gene055977 | MS.gene068638 | 0.806318 | 8.72E-50 | -1.69E-46 |
| MS.gene055977 | MS.gene068820 | -0.80187 | 7.34E-49 | -1.69E-46 |
| MS.gene055977 | MS.gene069166 | 0.803316 | 3.69E-49 | -1.69E-46 |
| MS.gene055977 | MS.gene069874 | 0.806161 | 9.41E-50 | -1.69E-46 |
| MS.gene055977 | MS.gene07004 | 0.818238 | 2.18E-52 | -1.69E-46 |
| MS.gene055977 | MS.gene070142 | 0.827802 | 1.28E-54 | -1.69E-46 |
| MS.gene055977 | MS.gene070457 | 0.814311 | 1.64E-51 | -1.69E-46 |
| MS.gene055977 | MS.gene071482 | 0.805572 | 1.25E-49 | -1.69E-46 |
| MS.gene055977 | MS.gene071483 | 0.807692 | 4.46E-50 | -1.69E-46 |
| MS.gene055977 | MS.gene072293 | 0.84322 | 1.60E-58 | -1.69E-46 |
| MS.gene055977 | MS.gene072376 | 0.808421 | 3.12E-50 | -1.69E-46 |
| MS.gene055977 | MS.gene26474 | 0.807036 | 6.15E-50 | -1.69E-46 |
| MS.gene055977 | MS.gene26475 | 0.821658 | 3.59E-53 | -1.69E-46 |
| MS.gene055977 | MS.gene28602 | 0.815431 | 9.28E-52 | -1.69E-46 |
| MS.gene055977 | MS.gene29687 | 0.804618 | 1.98E-49 | -1.69E-46 |
| MS.gene055977 | MS.gene31542 | 0.814833 | 1.26E-51 | -1.69E-46 |
| MS.gene055977 | MS.gene33132 | 0.816188 | 6.29E-52 | -1.69E-46 |
| MS.gene055977 | MS.gene33490 | 0.80583 | 1.10E-49 | -1.69E-46 |
| MS.gene055977 | MS.gene35741 | 0.83282 | 7.60E-56 | -1.69E-46 |
| MS.gene055977 | MS.gene37747 | 0.826151 | 3.17E-54 | -1.69E-46 |
| MS.gene055977 | MS.gene42005 | 0.808588 | 2.88E-50 | -1.69E-46 |
| MS.gene055977 | MS.gene44439 | -0.805139 | 1.54E-49 | -1.69E-46 |
| MS.gene055977 | MS.gene45607 | -0.807811 | 4.21E-50 | -1.69E-46 |
| MS.gene055977 | MS.gene47437 | 0.813281 | 2.77E-51 | -1.69E-46 |
| MS.gene055977 | MS.gene48021 | 0.801023 | 1.09E-48 | -1.69E-46 |
| MS.gene055977 | MS.gene51742 | 0.8046 | 2.00E-49 | -1.69E-46 |
| MS.gene055977 | MS.gene55012 | 0.811608 | 6.43E-51 | -1.69E-46 |
| MS.gene055977 | MS.gene56375 | 0.80919 | 2.14E-50 | -1.69E-46 |
| MS.gene055977 | MS.gene56384 | 0.801865 | 7.36E-49 | -1.69E-46 |
| MS.gene055977 | MS.gene57291 | 0.803289 | 3.74E-49 | -1.69E-46 |
| MS.gene055977 | MS.gene59799 | 0.817277 | 3.59E-52 | -1.69E-46 |
| MS.gene055977 | MS.gene60176 | -0.806137 | 9.52E-50 | -1.69E-46 |
| MS.gene055977 | MS.gene60177 | -0.814636 | 1.39E-51 | -1.69E-46 |
| MS.gene055977 | MS.gene61144 | -0.814441 | 1.54E-51 | -1.69E-46 |
| MS.gene055977 | MS.gene62631 | 0.803162 | 3.98E-49 | -1.69E-46 |
| MS.gene055977 | MS.gene63652 | 0.811199 | 7.89E-51 | -1.69E-46 |
| MS.gene055977 | MS.gene64394 | 0.816201 | 6.25E-52 | -1.69E-46 |
| MS.gene055977 | MS.gene66921 | 0.810756 | 9.84E-51 | -1.69E-46 |
| MS.gene055977 | MS.gene69635 | 0.808405 | 3.15E-50 | -1.69E-46 |
| MS.gene055977 | MS.gene71251 | 0.801826 | 7.50E-49 | -1.69E-46 |
| MS.gene055977 | MS.gene72323 | 0.829643 | 4.59E-55 | -1.69E-46 |
| MS.gene055977 | MS.gene72416 | -0.804318 | 2.29E-49 | -1.69E-46 |
| MS.gene055977 | MS.gene75472 | 0.811321 | 7.42E-51 | -1.69E-46 |
| MS.gene055977 | MS.gene76539 | 0.818001 | 2.46E-52 | -1.69E-46 |
| MS.gene055977 | MS.gene77814 | 0.810591 | 1.07E-50 | -1.69E-46 |
| MS.gene055977 | MS.gene81504 | 0.805611 | 1.23E-49 | -1.69E-46 |
| MS.gene055977 | MS.gene81505 | 0.811304 | 7.49E-51 | -1.69E-46 |
| MS.gene055977 | MS.gene81506 | 0.816566 | 5.18E-52 | -1.69E-46 |
| MS.gene055977 | MS.gene81725 | 0.81428 | 1.67E-51 | -1.69E-46 |
| MS.gene055977 | MS.gene82940 | 0.808292 | 3.33E-50 | -1.69E-46 |
| MS.gene055977 | MS.gene83394 | 0.803431 | 3.50E-49 | -1.69E-46 |
| MS.gene055977 | MS.gene85154 | 0.817758 | 2.79E-52 | -1.69E-46 |
| MS.gene055977 | MS.gene85346 | 0.815512 | 8.90E-52 | -1.69E-46 |
| MS.gene055977 | MS.gene88597 | 0.816454 | 5.48E-52 | -1.69E-46 |
| MS.gene055977 | MS.gene88661 | 0.861036 | 1.36E-63 | -1.69E-46 |
| MS.gene055977 | MS.gene88662 | 0.833137 | 6.34E-56 | -1.69E-46 |
| MS.gene055977 | MS.gene88663 | 0.844352 | 7.98E-59 | -1.69E-46 |
| MS.gene055977 | MS.gene88664 | 0.850079 | 2.14E-60 | -1.69E-46 |
| MS.gene055977 | MS.gene90819 | 0.810932 | 9.01E-51 | -1.69E-46 |
| MS.gene055977 | MS.gene92077 | 0.810791 | 9.67E-51 | -1.69E-46 |
| MS.gene055977 | MS.gene94214 | 0.800267 | 1.56E-48 | -1.69E-46 |
| MS.gene055977 | MS.gene95132 | 0.819846 | 9.37E-53 | -1.69E-46 |
| MS.gene055977 | MS.gene95804 | 0.813542 | 2.43E-51 | -1.69E-46 |
| MS.gene055977 | MS.gene95877 | 0.80841 | 3.14E-50 | -1.69E-46 |
| MS.gene055977 | MS.gene97340 | 0.801152 | 1.03E-48 | -1.69E-46 |
| MS.gene055977 | MS.gene97437 | 0.800602 | 1.33E-48 | -1.69E-46 |
| MS.gene055977 | MS.gene98480 | 0.819962 | 8.82E-53 | -1.69E-46 |
| MS.gene055977 | MS.gene99553 | 0.821264 | 4.43E-53 | -1.69E-46 |
| MS.gene055977 | MS.gene99938 | 0.830594 | 2.69E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055977.t1 | MTR_7g093530 | 98.227 | 282 | 5 | 0 | 1 | 282 | 1 | 282 | 0.0 | 580 |
| MS.gene055977.t1 | MTR_4g128410 | 92.933 | 283 | 19 | 1 | 1 | 282 | 1 | 283 | 0.0 | 548 |
| MS.gene055977.t1 | MTR_4g128580 | 85.932 | 263 | 33 | 2 | 21 | 279 | 23 | 285 | 8.25e-167 | 464 |
| MS.gene055977.t1 | MTR_4g128570 | 77.622 | 286 | 43 | 3 | 1 | 279 | 1 | 272 | 8.16e-166 | 461 |
| MS.gene055977.t1 | MTR_4g128400 | 74.377 | 281 | 67 | 1 | 4 | 279 | 3 | 283 | 2.82e-158 | 442 |
| MS.gene055977.t1 | MTR_4g126920 | 77.239 | 268 | 60 | 1 | 16 | 282 | 17 | 284 | 1.83e-152 | 427 |
| MS.gene055977.t1 | MTR_2g038860 | 72.202 | 277 | 72 | 1 | 8 | 279 | 10 | 286 | 3.45e-149 | 419 |
| MS.gene055977.t1 | MTR_2g038705 | 72.202 | 277 | 72 | 1 | 8 | 279 | 10 | 286 | 3.45e-149 | 419 |
| MS.gene055977.t1 | MTR_4g128590 | 72.281 | 285 | 55 | 3 | 3 | 279 | 7 | 275 | 3.84e-148 | 416 |
| MS.gene055977.t1 | MTR_8g081040 | 71.119 | 277 | 75 | 1 | 3 | 279 | 10 | 281 | 6.90e-145 | 408 |
| MS.gene055977.t1 | MTR_3g084630 | 73.063 | 271 | 67 | 1 | 10 | 280 | 14 | 278 | 1.82e-144 | 407 |
| MS.gene055977.t1 | MTR_3g084620 | 73.529 | 272 | 64 | 2 | 10 | 280 | 14 | 278 | 2.65e-144 | 406 |
| MS.gene055977.t1 | MTR_8g102220 | 67.399 | 273 | 65 | 3 | 11 | 280 | 16 | 267 | 2.67e-131 | 373 |
| MS.gene055977.t1 | MTR_5g091730 | 54.579 | 273 | 119 | 2 | 8 | 280 | 12 | 279 | 9.55e-107 | 311 |
| MS.gene055977.t1 | MTR_6g088320 | 52.878 | 278 | 124 | 3 | 6 | 279 | 9 | 283 | 4.22e-104 | 305 |
| MS.gene055977.t1 | MTR_3g089540 | 55.172 | 261 | 112 | 2 | 21 | 280 | 27 | 283 | 2.82e-103 | 303 |
| MS.gene055977.t1 | MTR_8g102910 | 54.152 | 277 | 119 | 4 | 8 | 279 | 6 | 279 | 8.65e-103 | 301 |
| MS.gene055977.t1 | MTR_7g084750 | 51.890 | 291 | 126 | 4 | 1 | 280 | 1 | 288 | 7.07e-102 | 299 |
| MS.gene055977.t1 | MTR_6g033055 | 53.901 | 282 | 116 | 4 | 9 | 279 | 9 | 287 | 7.07e-102 | 299 |
| MS.gene055977.t1 | MTR_6g033085 | 53.448 | 290 | 121 | 4 | 1 | 279 | 1 | 287 | 7.15e-102 | 299 |
| MS.gene055977.t1 | MTR_7g084770 | 56.154 | 260 | 108 | 3 | 24 | 280 | 32 | 288 | 2.53e-101 | 298 |
| MS.gene055977.t1 | MTR_7g084760 | 54.815 | 270 | 112 | 4 | 14 | 280 | 26 | 288 | 3.44e-101 | 298 |
| MS.gene055977.t1 | MTR_4g045853 | 50.530 | 283 | 126 | 5 | 7 | 279 | 10 | 288 | 1.71e-99 | 293 |
| MS.gene055977.t1 | MTR_2g089140 | 51.095 | 274 | 120 | 5 | 16 | 279 | 17 | 286 | 1.51e-98 | 291 |
| MS.gene055977.t1 | MTR_4g097640 | 49.638 | 276 | 130 | 6 | 8 | 279 | 17 | 287 | 4.34e-96 | 285 |
| MS.gene055977.t1 | MTR_4g097670 | 49.638 | 276 | 130 | 6 | 8 | 279 | 17 | 287 | 4.34e-96 | 285 |
| MS.gene055977.t1 | MTR_1g105900 | 48.399 | 281 | 143 | 1 | 3 | 281 | 13 | 293 | 5.46e-96 | 285 |
| MS.gene055977.t1 | MTR_4g097700 | 50.763 | 262 | 121 | 5 | 22 | 279 | 67 | 324 | 5.51e-95 | 283 |
| MS.gene055977.t1 | MTR_1g105495 | 47.619 | 294 | 138 | 5 | 2 | 281 | 5 | 296 | 1.86e-90 | 271 |
| MS.gene055977.t1 | MTR_2g089140 | 54.222 | 225 | 91 | 4 | 65 | 279 | 1 | 223 | 2.73e-87 | 260 |
| MS.gene055977.t1 | MTR_8g013055 | 45.594 | 261 | 131 | 5 | 24 | 279 | 31 | 285 | 3.99e-77 | 236 |
| MS.gene055977.t1 | MTR_7g056090 | 41.993 | 281 | 153 | 6 | 3 | 281 | 11 | 283 | 8.81e-67 | 209 |
| MS.gene055977.t1 | MTR_4g057450 | 41.509 | 265 | 138 | 7 | 23 | 279 | 49 | 304 | 3.79e-63 | 201 |
| MS.gene055977.t1 | MTR_7g102260 | 40.755 | 265 | 140 | 7 | 23 | 279 | 36 | 291 | 1.41e-62 | 199 |
| MS.gene055977.t1 | MTR_1g063020 | 40.000 | 265 | 142 | 6 | 23 | 279 | 39 | 294 | 4.51e-61 | 195 |
| MS.gene055977.t1 | MTR_2g049130 | 39.655 | 290 | 153 | 11 | 1 | 280 | 1 | 278 | 1.47e-60 | 194 |
| MS.gene055977.t1 | MTR_2g049030 | 38.754 | 289 | 155 | 10 | 1 | 276 | 1 | 280 | 2.64e-60 | 193 |
| MS.gene055977.t1 | MTR_2g095800 | 40.892 | 269 | 143 | 8 | 19 | 279 | 49 | 309 | 3.41e-60 | 194 |
| MS.gene055977.t1 | MTR_1g033420 | 40.698 | 258 | 136 | 8 | 32 | 279 | 41 | 291 | 3.46e-55 | 181 |
| MS.gene055977.t1 | MTR_8g064180 | 36.742 | 264 | 154 | 7 | 28 | 280 | 50 | 311 | 1.27e-51 | 171 |
| MS.gene055977.t1 | MTR_5g029100 | 35.115 | 262 | 156 | 6 | 32 | 282 | 50 | 308 | 2.66e-50 | 169 |
| MS.gene055977.t1 | MTR_5g029100 | 35.294 | 238 | 140 | 6 | 56 | 282 | 43 | 277 | 5.98e-46 | 157 |
| MS.gene055977.t1 | MTR_8g090100 | 35.379 | 277 | 148 | 10 | 24 | 282 | 21 | 284 | 3.16e-45 | 155 |
| MS.gene055977.t1 | MTR_8g479340 | 45.455 | 99 | 49 | 3 | 186 | 281 | 41 | 137 | 2.05e-21 | 88.2 |
| MS.gene055977.t1 | MTR_8g032640 | 32.759 | 174 | 109 | 4 | 46 | 217 | 33 | 200 | 1.93e-15 | 73.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055977.t1 | AT4G25810 | 75.000 | 280 | 67 | 2 | 3 | 279 | 4 | 283 | 1.13e-159 | 446 |
| MS.gene055977.t1 | AT5G57560 | 71.685 | 279 | 74 | 2 | 6 | 279 | 3 | 281 | 6.15e-154 | 431 |
| MS.gene055977.t1 | AT5G57550 | 69.014 | 284 | 77 | 2 | 5 | 280 | 3 | 283 | 1.98e-152 | 427 |
| MS.gene055977.t1 | AT4G30270 | 69.176 | 279 | 72 | 2 | 1 | 279 | 1 | 265 | 1.11e-146 | 412 |
| MS.gene055977.t1 | AT3G23730 | 66.431 | 283 | 90 | 2 | 3 | 280 | 5 | 287 | 1.92e-142 | 402 |
| MS.gene055977.t1 | AT5G57530 | 69.202 | 263 | 81 | 0 | 19 | 281 | 22 | 284 | 1.36e-139 | 395 |
| MS.gene055977.t1 | AT4G14130 | 65.714 | 280 | 95 | 1 | 2 | 280 | 6 | 285 | 4.30e-139 | 394 |
| MS.gene055977.t1 | AT5G57540 | 68.966 | 261 | 81 | 0 | 21 | 281 | 23 | 283 | 9.97e-139 | 392 |
| MS.gene055977.t1 | AT4G25820 | 69.173 | 266 | 82 | 0 | 16 | 281 | 22 | 287 | 2.69e-138 | 392 |
| MS.gene055977.t1 | AT5G48070 | 64.388 | 278 | 92 | 3 | 5 | 279 | 8 | 281 | 2.84e-138 | 391 |
| MS.gene055977.t1 | AT2G18800 | 65.141 | 284 | 86 | 4 | 9 | 279 | 13 | 296 | 1.21e-134 | 383 |
| MS.gene055977.t1 | AT1G65310 | 65.385 | 260 | 85 | 2 | 21 | 279 | 48 | 303 | 7.39e-124 | 355 |
| MS.gene055977.t1 | AT4G30280 | 62.319 | 276 | 97 | 3 | 7 | 279 | 10 | 281 | 1.05e-123 | 354 |
| MS.gene055977.t1 | AT1G65310 | 65.385 | 260 | 85 | 2 | 21 | 279 | 26 | 281 | 1.22e-123 | 354 |
| MS.gene055977.t1 | AT4G30290 | 62.545 | 275 | 96 | 3 | 8 | 279 | 6 | 276 | 1.48e-123 | 354 |
| MS.gene055977.t1 | AT5G13870 | 54.064 | 283 | 120 | 4 | 1 | 280 | 13 | 288 | 1.24e-102 | 301 |
| MS.gene055977.t1 | AT5G13870 | 54.064 | 283 | 120 | 4 | 1 | 280 | 13 | 288 | 1.24e-102 | 301 |
| MS.gene055977.t1 | AT5G13870 | 54.064 | 283 | 120 | 4 | 1 | 280 | 13 | 288 | 1.24e-102 | 301 |
| MS.gene055977.t1 | AT4G03210 | 49.462 | 279 | 133 | 4 | 6 | 280 | 11 | 285 | 4.56e-98 | 290 |
| MS.gene055977.t1 | AT2G06850 | 52.113 | 284 | 124 | 4 | 6 | 280 | 11 | 291 | 5.38e-98 | 290 |
| MS.gene055977.t1 | AT5G65730 | 47.985 | 273 | 140 | 2 | 9 | 280 | 20 | 291 | 7.86e-97 | 286 |
| MS.gene055977.t1 | AT2G14620 | 47.183 | 284 | 146 | 2 | 1 | 281 | 14 | 296 | 3.12e-94 | 280 |
| MS.gene055977.t1 | AT4G28850 | 48.399 | 281 | 132 | 4 | 10 | 279 | 9 | 287 | 6.14e-94 | 279 |
| MS.gene055977.t1 | AT4G37800 | 49.813 | 267 | 126 | 5 | 17 | 279 | 27 | 289 | 2.82e-93 | 278 |
| MS.gene055977.t1 | AT2G06850 | 57.576 | 231 | 92 | 3 | 53 | 280 | 4 | 231 | 3.83e-92 | 273 |
| MS.gene055977.t1 | AT4G03210 | 53.975 | 239 | 101 | 4 | 46 | 280 | 24 | 257 | 1.36e-91 | 272 |
| MS.gene055977.t1 | AT1G11545 | 47.917 | 288 | 130 | 7 | 8 | 281 | 20 | 301 | 6.67e-89 | 267 |
| MS.gene055977.t1 | AT4G13090 | 45.965 | 285 | 146 | 4 | 2 | 280 | 7 | 289 | 3.84e-83 | 252 |
| MS.gene055977.t1 | AT2G14620 | 50.435 | 230 | 110 | 2 | 55 | 281 | 18 | 246 | 7.80e-81 | 244 |
| MS.gene055977.t1 | AT3G25050 | 46.332 | 259 | 132 | 4 | 24 | 279 | 35 | 289 | 1.02e-79 | 243 |
| MS.gene055977.t1 | AT2G14620 | 51.131 | 221 | 104 | 2 | 64 | 281 | 16 | 235 | 7.17e-79 | 239 |
| MS.gene055977.t1 | AT4G13080 | 43.357 | 286 | 153 | 4 | 1 | 280 | 10 | 292 | 2.30e-78 | 239 |
| MS.gene055977.t1 | AT2G36870 | 41.887 | 265 | 137 | 6 | 23 | 279 | 42 | 297 | 1.31e-63 | 202 |
| MS.gene055977.t1 | AT3G44990 | 42.424 | 264 | 135 | 7 | 24 | 279 | 39 | 293 | 3.20e-60 | 193 |
| MS.gene055977.t1 | AT1G32170 | 34.448 | 299 | 176 | 8 | 1 | 282 | 1 | 296 | 6.94e-55 | 181 |
| MS.gene055977.t1 | AT1G10550 | 35.769 | 260 | 150 | 5 | 35 | 279 | 52 | 309 | 4.45e-53 | 175 |
| MS.gene055977.t1 | AT1G14720 | 36.226 | 265 | 157 | 7 | 23 | 279 | 30 | 290 | 4.70e-52 | 173 |
| MS.gene055977.t1 | AT2G01850 | 33.962 | 265 | 163 | 7 | 23 | 279 | 30 | 290 | 4.15e-48 | 163 |
| MS.gene055977.t1 | AT3G48580 | 35.955 | 267 | 149 | 9 | 14 | 279 | 28 | 273 | 1.40e-46 | 157 |
| MS.gene055977.t1 | AT4G18990 | 34.737 | 285 | 147 | 10 | 30 | 282 | 38 | 315 | 7.59e-46 | 158 |
| MS.gene055977.t1 | AT3G48580 | 35.683 | 227 | 129 | 7 | 54 | 279 | 4 | 214 | 3.41e-40 | 139 |
| MS.gene055977.t1 | AT4G18990 | 36.408 | 206 | 105 | 7 | 97 | 282 | 42 | 241 | 4.39e-38 | 135 |
| MS.gene055977.t1 | AT2G36870 | 45.324 | 139 | 66 | 3 | 23 | 153 | 42 | 178 | 4.02e-32 | 117 |
| MS.gene055977.t1 | AT3G48580 | 31.783 | 258 | 134 | 10 | 23 | 279 | 37 | 253 | 1.34e-29 | 112 |
Find 68 sgRNAs with CRISPR-Local
Find 82 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTGATGTGCTTACATAAT+AGG | 0.234785 | 7.4:+15395457 | None:intergenic |
| GAAATTGACTTTGAATTCTT+AGG | 0.253040 | 7.4:-15395290 | MS.gene055977:CDS |
| TGAGAATCTATTCTAGTCTT+TGG | 0.265403 | 7.4:-15394949 | MS.gene055977:CDS |
| ATGTTCTTGAATTCTCTAAT+TGG | 0.274937 | 7.4:+15395010 | None:intergenic |
| AATGCATGCACTGTGTCTTC+TGG | 0.314712 | 7.4:-15394836 | MS.gene055977:CDS |
| GTCTTTGGAATGCTGATGAT+TGG | 0.342081 | 7.4:-15394934 | MS.gene055977:CDS |
| TTCACACCTATTCCATCCTC+TGG | 0.371800 | 7.4:-15395163 | MS.gene055977:CDS |
| ATTAGCATTGAAGTTTCTAT+AGG | 0.401233 | 7.4:+15394856 | None:intergenic |
| ACATTGGTATGAAGAATGTA+TGG | 0.415981 | 7.4:+15395251 | None:intergenic |
| TGCTTGGTTCTCAGAGGAGT+TGG | 0.433098 | 7.4:-15394777 | MS.gene055977:CDS |
| AAGGCCCTGAGGAAATCTTT+TGG | 0.436526 | 7.4:+15394685 | None:intergenic |
| AGACTAGAATAGATTCTCAT+TGG | 0.441045 | 7.4:+15394953 | None:intergenic |
| CTTGACAAATCCTCTGGCTC+TGG | 0.442693 | 7.4:-15395566 | MS.gene055977:CDS |
| ATGCAGCTTAAACTCGTTCC+TGG | 0.444564 | 7.4:-15395503 | MS.gene055977:CDS |
| CTCGTTCCTGGCAACTCTGC+TGG | 0.457205 | 7.4:-15395491 | MS.gene055977:CDS |
| TTGTCCCTTGACAAATCCTC+TGG | 0.468358 | 7.4:-15395572 | MS.gene055977:CDS |
| TAGAATAGATTCTCATTGGT+TGG | 0.468992 | 7.4:+15394957 | None:intergenic |
| TCTTTGGAATGCTGATGATT+GGG | 0.473720 | 7.4:-15394933 | MS.gene055977:CDS |
| CACAGTCTAATAAGAATGCT+TGG | 0.481977 | 7.4:-15394793 | MS.gene055977:CDS |
| ACAGTTGCAATTGCCTCTGC+TGG | 0.489680 | 7.4:-15395671 | MS.gene055977:CDS |
| TGATACCAAAAGATTTCCTC+AGG | 0.490646 | 7.4:-15394690 | MS.gene055977:CDS |
| TTCAAGAACATGGAATCAAA+TGG | 0.495147 | 7.4:-15394998 | MS.gene055977:CDS |
| TGGGTTCCAGAGGATGGAAT+AGG | 0.498523 | 7.4:+15395157 | None:intergenic |
| GAGAGCAACAATTCTACCTA+TGG | 0.502278 | 7.4:-15395205 | MS.gene055977:CDS |
| CTTAACAAGTCCACCTCTTG+TGG | 0.502433 | 7.4:+15394910 | None:intergenic |
| GTACTTACACAATGCGTTGT+GGG | 0.502506 | 7.4:+15395138 | None:intergenic |
| TTAATTCAGCTATCATCAAA+AGG | 0.502910 | 7.4:-15395326 | MS.gene055977:intron |
| GTGGACTTGTTAAGACAGAT+TGG | 0.508499 | 7.4:-15394901 | MS.gene055977:CDS |
| GCAACTCTTGAAAATGCCAT+TGG | 0.521914 | 7.4:+15395716 | None:intergenic |
| ATCAAGACTTTGATATAACA+TGG | 0.525397 | 7.4:-15395640 | MS.gene055977:CDS |
| GGAAGCAGTGAAAGGAGCAT+TGG | 0.527846 | 7.4:+15394877 | None:intergenic |
| ACAGTGCCAGCAGAGTTGCC+AGG | 0.543526 | 7.4:+15395485 | None:intergenic |
| GCGTTGTGGGTTCCAGAGGA+TGG | 0.545929 | 7.4:+15395151 | None:intergenic |
| CTGCAGTTGGGTCAAACCAT+AGG | 0.546848 | 7.4:+15395189 | None:intergenic |
| AATGTGTTTAGCCAAGGAAA+AGG | 0.552403 | 7.4:-15395233 | MS.gene055977:CDS |
| TAGGTGTGAAAATCTGCAGT+TGG | 0.552711 | 7.4:+15395176 | None:intergenic |
| AGGGCCTTCCTCAAGAATGC+AGG | 0.553967 | 7.4:-15394670 | MS.gene055977:CDS |
| CTGTAGAGATCAAAATGACT+AGG | 0.554171 | 7.4:+15395690 | None:intergenic |
| CATACCAATGTGTTTAGCCA+AGG | 0.557351 | 7.4:-15395239 | MS.gene055977:CDS |
| AGGTGTGAAAATCTGCAGTT+GGG | 0.562198 | 7.4:+15395177 | None:intergenic |
| CAAGGGACAAAGTAAGAAGT+TGG | 0.564881 | 7.4:+15395585 | None:intergenic |
| TTTCTATAGGAAGCAGTGAA+AGG | 0.568107 | 7.4:+15394869 | None:intergenic |
| ATCATCAAAAGGAGGTGCAT+GGG | 0.570048 | 7.4:-15395315 | MS.gene055977:CDS |
| TCAAGACTTTGATATAACAT+GGG | 0.571188 | 7.4:-15395639 | MS.gene055977:CDS |
| CAGAGCCAGAGGATTTGTCA+AGG | 0.573276 | 7.4:+15395567 | None:intergenic |
| TTTGATATAACATGGGGAGA+TGG | 0.574885 | 7.4:-15395632 | MS.gene055977:CDS |
| CAAGTCATGAGAGGCTCAAG+TGG | 0.575997 | 7.4:-15394748 | MS.gene055977:CDS |
| TAAACCATCCTGCATTCTTG+AGG | 0.578265 | 7.4:+15394662 | None:intergenic |
| TATCATCAAAAGGAGGTGCA+TGG | 0.582020 | 7.4:-15395316 | MS.gene055977:CDS |
| CAATGCGTTGTGGGTTCCAG+AGG | 0.582602 | 7.4:+15395147 | None:intergenic |
| AGTACTTACACAATGCGTTG+TGG | 0.583264 | 7.4:+15395137 | None:intergenic |
| AATTAGAGAATTCAAGAACA+TGG | 0.587989 | 7.4:-15395008 | MS.gene055977:CDS |
| GATGATTGGGCCACAAGAGG+TGG | 0.592351 | 7.4:-15394920 | MS.gene055977:CDS |
| CCATCCTGCATTCTTGAGGA+AGG | 0.601607 | 7.4:+15394666 | None:intergenic |
| CATTGGTATGAAGAATGTAT+GGG | 0.604051 | 7.4:+15395252 | None:intergenic |
| AGAGCCAGAGGATTTGTCAA+GGG | 0.612252 | 7.4:+15395568 | None:intergenic |
| GGATTGAAAGCCAGAGCCAG+AGG | 0.618299 | 7.4:+15395556 | None:intergenic |
| CAAGACTTTGATATAACATG+GGG | 0.627432 | 7.4:-15395638 | MS.gene055977:CDS |
| GAATTCTTAGGAAACTTGAG+TGG | 0.632192 | 7.4:-15395278 | MS.gene055977:CDS |
| GCTGATGATTGGGCCACAAG+AGG | 0.655452 | 7.4:-15394923 | MS.gene055977:CDS |
| CATTCTTGAGGAAGGCCCTG+AGG | 0.663273 | 7.4:+15394674 | None:intergenic |
| TAAGAATGCTTGGTTCTCAG+AGG | 0.671213 | 7.4:-15394783 | MS.gene055977:CDS |
| CGTGCTAAAATACTCAACAA+TGG | 0.672548 | 7.4:-15395608 | MS.gene055977:CDS |
| AAGTCATGAGAGGCTCAAGT+GGG | 0.675575 | 7.4:-15394747 | MS.gene055977:CDS |
| TGGATTCTACAAGTCATGAG+AGG | 0.679866 | 7.4:-15394757 | MS.gene055977:CDS |
| CCTTCCTCAAGAATGCAGGA+TGG | 0.683725 | 7.4:-15394666 | MS.gene055977:CDS |
| ATTCAGCTATCATCAAAAGG+AGG | 0.688497 | 7.4:-15395323 | MS.gene055977:intron |
| GATACCAAAAGATTTCCTCA+GGG | 0.691000 | 7.4:-15394689 | MS.gene055977:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAACTATACATTTTTGTTTA+AGG | - | chr7.4:15394960-15394979 | MS.gene055977:CDS | 15.0% |
| !!! | TTTTTTTTAATTACTTGTGT+CGG | - | chr7.4:15395281-15395300 | MS.gene055977:CDS | 15.0% |
| !!! | TAAAAGTTCTTTTAACTCAT+TGG | - | chr7.4:15395010-15395029 | MS.gene055977:CDS | 20.0% |
| ! | AATTAGAGAATTCAAGAACA+TGG | - | chr7.4:15395366-15395385 | MS.gene055977:intron | 25.0% |
| ! | ATCAAGACTTTGATATAACA+TGG | - | chr7.4:15394734-15394753 | MS.gene055977:CDS | 25.0% |
| ! | ATGTTCTTGAATTCTCTAAT+TGG | + | chr7.4:15395367-15395386 | None:intergenic | 25.0% |
| ! | ATTTGATGTGCTTACATAAT+AGG | + | chr7.4:15394920-15394939 | None:intergenic | 25.0% |
| ! | TCAAGACTTTGATATAACAT+GGG | - | chr7.4:15394735-15394754 | MS.gene055977:CDS | 25.0% |
| ! | TTAATTCAGCTATCATCAAA+AGG | - | chr7.4:15395048-15395067 | MS.gene055977:intron | 25.0% |
| !! | ATTAGCATTGAAGTTTCTAT+AGG | + | chr7.4:15395521-15395540 | None:intergenic | 25.0% |
| !! | GAAATTGACTTTGAATTCTT+AGG | - | chr7.4:15395084-15395103 | MS.gene055977:intron | 25.0% |
| !! | TCCAAAAATGAATACCTTTT+TGG | - | chr7.4:15394838-15394857 | MS.gene055977:CDS | 25.0% |
| !!! | TTTATTTTTCAGTTTCTCTG+TGG | - | chr7.4:15395333-15395352 | MS.gene055977:intron | 25.0% |
| ACATTGGTATGAAGAATGTA+TGG | + | chr7.4:15395126-15395145 | None:intergenic | 30.0% | |
| AGACTAGAATAGATTCTCAT+TGG | + | chr7.4:15395424-15395443 | None:intergenic | 30.0% | |
| CAAGACTTTGATATAACATG+GGG | - | chr7.4:15394736-15394755 | MS.gene055977:CDS | 30.0% | |
| CATTGGTATGAAGAATGTAT+GGG | + | chr7.4:15395125-15395144 | None:intergenic | 30.0% | |
| TAGAATAGATTCTCATTGGT+TGG | + | chr7.4:15395420-15395439 | None:intergenic | 30.0% | |
| TTCAAGAACATGGAATCAAA+TGG | - | chr7.4:15395376-15395395 | MS.gene055977:intron | 30.0% | |
| ! | GCATATCAATTTTGCCAAAA+AGG | + | chr7.4:15394855-15394874 | None:intergenic | 30.0% |
| ! | TGAGAATCTATTCTAGTCTT+TGG | - | chr7.4:15395425-15395444 | MS.gene055977:intron | 30.0% |
| !!! | ATTCTCATTGGTTGGTTTTT+GGG | + | chr7.4:15395412-15395431 | None:intergenic | 30.0% |
| !!! | GCCAAAAAGGTATTCATTTT+TGG | + | chr7.4:15394842-15394861 | None:intergenic | 30.0% |
| AATGTGTTTAGCCAAGGAAA+AGG | - | chr7.4:15395141-15395160 | MS.gene055977:intron | 35.0% | |
| ATTCAGCTATCATCAAAAGG+AGG | - | chr7.4:15395051-15395070 | MS.gene055977:intron | 35.0% | |
| CACAGTCTAATAAGAATGCT+TGG | - | chr7.4:15395581-15395600 | MS.gene055977:CDS | 35.0% | |
| CGTGCTAAAATACTCAACAA+TGG | - | chr7.4:15394766-15394785 | MS.gene055977:CDS | 35.0% | |
| CTGTAGAGATCAAAATGACT+AGG | + | chr7.4:15394687-15394706 | None:intergenic | 35.0% | |
| GAATTCTTAGGAAACTTGAG+TGG | - | chr7.4:15395096-15395115 | MS.gene055977:intron | 35.0% | |
| GATACCAAAAGATTTCCTCA+GGG | - | chr7.4:15395685-15395704 | MS.gene055977:CDS | 35.0% | |
| TGATACCAAAAGATTTCCTC+AGG | - | chr7.4:15395684-15395703 | MS.gene055977:CDS | 35.0% | |
| TTGATAAAAATTGCCAGCAG+AGG | + | chr7.4:15394719-15394738 | None:intergenic | 35.0% | |
| TTTCTATAGGAAGCAGTGAA+AGG | + | chr7.4:15395508-15395527 | None:intergenic | 35.0% | |
| TTTGATATAACATGGGGAGA+TGG | - | chr7.4:15394742-15394761 | MS.gene055977:CDS | 35.0% | |
| ! | TTTTCCTTGGCTAAACACAT+TGG | + | chr7.4:15395142-15395161 | None:intergenic | 35.0% |
| !! | TCTTTGGAATGCTGATGATT+GGG | - | chr7.4:15395441-15395460 | MS.gene055977:intron | 35.0% |
| !! | TTTTTCAGTTTCTCTGTGGA+TGG | - | chr7.4:15395337-15395356 | MS.gene055977:intron | 35.0% |
| !!! | ATTGGTTGGTTTTTGGGAAA+TGG | + | chr7.4:15395406-15395425 | None:intergenic | 35.0% |
| !!! | GATTCTCATTGGTTGGTTTT+TGG | + | chr7.4:15395413-15395432 | None:intergenic | 35.0% |
| AGGTGTGAAAATCTGCAGTT+GGG | + | chr7.4:15395200-15395219 | None:intergenic | 40.0% | |
| AGTACTTACACAATGCGTTG+TGG | + | chr7.4:15395240-15395259 | None:intergenic | 40.0% | |
| CAAGGGACAAAGTAAGAAGT+TGG | + | chr7.4:15394792-15394811 | None:intergenic | 40.0% | |
| CATACCAATGTGTTTAGCCA+AGG | - | chr7.4:15395135-15395154 | MS.gene055977:intron | 40.0% | |
| GAGAGCAACAATTCTACCTA+TGG | - | chr7.4:15395169-15395188 | MS.gene055977:CDS | 40.0% | |
| GTACTTACACAATGCGTTGT+GGG | + | chr7.4:15395239-15395258 | None:intergenic | 40.0% | |
| TAAACCATCCTGCATTCTTG+AGG | + | chr7.4:15395715-15395734 | None:intergenic | 40.0% | |
| TAGGTGTGAAAATCTGCAGT+TGG | + | chr7.4:15395201-15395220 | None:intergenic | 40.0% | |
| TGGATTCTACAAGTCATGAG+AGG | - | chr7.4:15395617-15395636 | MS.gene055977:CDS | 40.0% | |
| ! | ATCATCAAAAGGAGGTGCAT+GGG | - | chr7.4:15395059-15395078 | MS.gene055977:intron | 40.0% |
| ! | TAAGAATGCTTGGTTCTCAG+AGG | - | chr7.4:15395591-15395610 | MS.gene055977:CDS | 40.0% |
| ! | TATCATCAAAAGGAGGTGCA+TGG | - | chr7.4:15395058-15395077 | MS.gene055977:intron | 40.0% |
| !! | GTCTTTGGAATGCTGATGAT+TGG | - | chr7.4:15395440-15395459 | MS.gene055977:intron | 40.0% |
| !! | GTGGACTTGTTAAGACAGAT+TGG | - | chr7.4:15395473-15395492 | MS.gene055977:CDS | 40.0% |
| AAGTCATGAGAGGCTCAAGT+GGG | - | chr7.4:15395627-15395646 | MS.gene055977:CDS | 45.0% | |
| AATGCATGCACTGTGTCTTC+TGG | - | chr7.4:15395538-15395557 | MS.gene055977:CDS | 45.0% | |
| AGAGCCAGAGGATTTGTCAA+GGG | + | chr7.4:15394809-15394828 | None:intergenic | 45.0% | |
| ATGCAGCTTAAACTCGTTCC+TGG | - | chr7.4:15394871-15394890 | MS.gene055977:CDS | 45.0% | |
| CTTAACAAGTCCACCTCTTG+TGG | + | chr7.4:15395467-15395486 | None:intergenic | 45.0% | |
| TTCACACCTATTCCATCCTC+TGG | - | chr7.4:15395211-15395230 | MS.gene055977:CDS | 45.0% | |
| TTGTCCCTTGACAAATCCTC+TGG | - | chr7.4:15394802-15394821 | MS.gene055977:CDS | 45.0% | |
| ! | AAGGCCCTGAGGAAATCTTT+TGG | + | chr7.4:15395692-15395711 | None:intergenic | 45.0% |
| !!! | ATTAAAAAAAATCAATTTTA+AGG | + | chr7.4:15395272-15395291 | None:intergenic | 5.0% |
| ACAGTTGCAATTGCCTCTGC+TGG | - | chr7.4:15394703-15394722 | MS.gene055977:CDS | 50.0% | |
| CAAGTCATGAGAGGCTCAAG+TGG | - | chr7.4:15395626-15395645 | MS.gene055977:CDS | 50.0% | |
| CAGAGCCAGAGGATTTGTCA+AGG | + | chr7.4:15394810-15394829 | None:intergenic | 50.0% | |
| CCATCCTGCATTCTTGAGGA+AGG | + | chr7.4:15395711-15395730 | None:intergenic | 50.0% | |
| CCTTCCTCAAGAATGCAGGA+TGG | - | chr7.4:15395708-15395727 | MS.gene055977:CDS | 50.0% | |
| CTGCAGTTGGGTCAAACCAT+AGG | + | chr7.4:15395188-15395207 | None:intergenic | 50.0% | |
| TGGGTTCCAGAGGATGGAAT+AGG | + | chr7.4:15395220-15395239 | None:intergenic | 50.0% | |
| ! | CTTGACAAATCCTCTGGCTC+TGG | - | chr7.4:15394808-15394827 | MS.gene055977:CDS | 50.0% |
| ! | GCTCTCTGTTGCCTTTTCCT+TGG | + | chr7.4:15395155-15395174 | None:intergenic | 50.0% |
| ! | GGAAGCAGTGAAAGGAGCAT+TGG | + | chr7.4:15395500-15395519 | None:intergenic | 50.0% |
| ! | TGCTTGGTTCTCAGAGGAGT+TGG | - | chr7.4:15395597-15395616 | MS.gene055977:CDS | 50.0% |
| AGGGCCTTCCTCAAGAATGC+AGG | - | chr7.4:15395704-15395723 | MS.gene055977:CDS | 55.0% | |
| CAATGCGTTGTGGGTTCCAG+AGG | + | chr7.4:15395230-15395249 | None:intergenic | 55.0% | |
| CATTCTTGAGGAAGGCCCTG+AGG | + | chr7.4:15395703-15395722 | None:intergenic | 55.0% | |
| GATGATTGGGCCACAAGAGG+TGG | - | chr7.4:15395454-15395473 | MS.gene055977:intron | 55.0% | |
| GCTGATGATTGGGCCACAAG+AGG | - | chr7.4:15395451-15395470 | MS.gene055977:intron | 55.0% | |
| GGATTGAAAGCCAGAGCCAG+AGG | + | chr7.4:15394821-15394840 | None:intergenic | 55.0% | |
| ACAGTGCCAGCAGAGTTGCC+AGG | + | chr7.4:15394892-15394911 | None:intergenic | 60.0% | |
| CTCGTTCCTGGCAACTCTGC+TGG | - | chr7.4:15394883-15394902 | MS.gene055977:CDS | 60.0% | |
| GCGTTGTGGGTTCCAGAGGA+TGG | + | chr7.4:15395226-15395245 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 15394661 | 15395735 | 15394661 | ID=MS.gene055977 |
| chr7.4 | mRNA | 15394661 | 15395735 | 15394661 | ID=MS.gene055977.t1;Parent=MS.gene055977 |
| chr7.4 | exon | 15395472 | 15395735 | 15395472 | ID=MS.gene055977.t1.exon1;Parent=MS.gene055977.t1 |
| chr7.4 | CDS | 15395472 | 15395735 | 15395472 | ID=cds.MS.gene055977.t1;Parent=MS.gene055977.t1 |
| chr7.4 | exon | 15395146 | 15395339 | 15395146 | ID=MS.gene055977.t1.exon2;Parent=MS.gene055977.t1 |
| chr7.4 | CDS | 15395146 | 15395339 | 15395146 | ID=cds.MS.gene055977.t1;Parent=MS.gene055977.t1 |
| chr7.4 | exon | 15394661 | 15395051 | 15394661 | ID=MS.gene055977.t1.exon3;Parent=MS.gene055977.t1 |
| chr7.4 | CDS | 15394661 | 15395051 | 15394661 | ID=cds.MS.gene055977.t1;Parent=MS.gene055977.t1 |
| Gene Sequence |
| Protein sequence |
