Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062994.t1 | AFK41355.1 | 98 | 102 | 2 | 0 | 1 | 102 | 77 | 178 | 4.90E-49 | 203.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062994.t1 | Q8GUK6 | 78.0 | 100 | 22 | 0 | 1 | 100 | 74 | 173 | 1.9e-41 | 169.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062994.t1 | G7JMC6 | 98.0 | 102 | 2 | 0 | 1 | 102 | 77 | 178 | 3.5e-49 | 203.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049807 | MS.gene062994 | 0.811046 | 8.51E-51 | -1.69E-46 |
| MS.gene050359 | MS.gene062994 | 0.802941 | 4.42E-49 | -1.69E-46 |
| MS.gene052533 | MS.gene062994 | 0.820148 | 7.99E-53 | -1.69E-46 |
| MS.gene056677 | MS.gene062994 | 0.814383 | 1.58E-51 | -1.69E-46 |
| MS.gene056699 | MS.gene062994 | 0.800515 | 1.39E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062994.t1 | MTR_4g073020 | 97.087 | 103 | 3 | 0 | 1 | 103 | 77 | 179 | 1.27e-68 | 206 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062994.t1 | AT4G38570 | 78.000 | 100 | 22 | 0 | 1 | 100 | 74 | 173 | 2.03e-55 | 172 |
| MS.gene062994.t1 | AT4G38570 | 78.000 | 100 | 22 | 0 | 1 | 100 | 74 | 173 | 2.07e-55 | 172 |
| MS.gene062994.t1 | AT4G38570 | 78.000 | 100 | 22 | 0 | 1 | 100 | 74 | 173 | 2.07e-55 | 172 |
| MS.gene062994.t1 | AT4G38570 | 78.000 | 100 | 22 | 0 | 1 | 100 | 74 | 173 | 2.07e-55 | 172 |
| MS.gene062994.t1 | AT1G68000 | 77.000 | 100 | 23 | 0 | 1 | 100 | 77 | 176 | 3.19e-55 | 172 |
Find 33 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTATGGAAATAGGATGTTTA+TGG | 0.138744 | 4.2:+35305730 | MS.gene062994:CDS |
| ATATATCTTACTTGTATAAT+TGG | 0.141084 | 4.2:-35305385 | None:intergenic |
| CTTTAAATGCAGCACTTTCT+TGG | 0.239031 | 4.2:+35305649 | MS.gene062994:intron |
| TCAGGGCTTATTATGGAAAT+AGG | 0.248445 | 4.2:+35305720 | MS.gene062994:CDS |
| CCAGTGGCTGCCAATGTCTA+AGG | 0.414443 | 4.2:-35305512 | None:intergenic |
| TATATCTTACTTGTATAATT+GGG | 0.417889 | 4.2:-35305384 | None:intergenic |
| AAATGCAGCACTTTCTTGGC+TGG | 0.441621 | 4.2:+35305653 | MS.gene062994:intron |
| CCTTAGACATTGGCAGCCAC+TGG | 0.469038 | 4.2:+35305512 | MS.gene062994:CDS |
| GCAAGGTGGGTGAATGGCAG+TGG | 0.470544 | 4.2:+35307261 | MS.gene062994:CDS |
| ATGTAAAAGACAGCACCAAC+TGG | 0.480628 | 4.2:+35305693 | MS.gene062994:CDS |
| TGCTAGGAACCATTGTGGTT+AGG | 0.489067 | 4.2:+35307298 | MS.gene062994:CDS |
| GGCTGGCAAAGCCAGTCATA+AGG | 0.506204 | 4.2:+35305670 | MS.gene062994:CDS |
| GCCACTGGTTTCAAATGTAC+AGG | 0.506959 | 4.2:+35305527 | MS.gene062994:CDS |
| TGGCAGTTAAAGAGTGGGCT+AGG | 0.512823 | 4.2:+35307227 | MS.gene062994:intron |
| AGTGGGCTAGGATGCTTAGT+TGG | 0.518814 | 4.2:+35307239 | MS.gene062994:CDS |
| TCATTGCTCGCCTTAGACAT+TGG | 0.525578 | 4.2:+35305502 | MS.gene062994:CDS |
| GCTAGGATGCTTAGTTGGCA+AGG | 0.555401 | 4.2:+35307244 | MS.gene062994:CDS |
| TAGTTGGCAAGGTGGGTGAA+TGG | 0.571250 | 4.2:+35307255 | MS.gene062994:CDS |
| TGCTGGATATGGTAACCGAC+AGG | 0.572372 | 4.2:+35305187 | None:intergenic |
| GGATGCTTAGTTGGCAAGGT+GGG | 0.576425 | 4.2:+35307248 | MS.gene062994:CDS |
| CAAGGTGGGTGAATGGCAGT+GGG | 0.584286 | 4.2:+35307262 | MS.gene062994:CDS |
| GTTATATGGCAGTTAAAGAG+TGG | 0.586566 | 4.2:+35307221 | MS.gene062994:intron |
| AGGATGCTTAGTTGGCAAGG+TGG | 0.600507 | 4.2:+35307247 | MS.gene062994:CDS |
| GGGTATGCAAGATTATTGCT+AGG | 0.603853 | 4.2:+35307282 | MS.gene062994:CDS |
| CTTTCCTTGCCTAACCACAA+TGG | 0.609855 | 4.2:-35307307 | None:intergenic |
| ACCTGTACATTTGAAACCAG+TGG | 0.617531 | 4.2:-35305528 | None:intergenic |
| GGAGAATCAAACAGAGACAT+TGG | 0.622103 | 4.2:+35305893 | MS.gene062994:CDS |
| ATAAGCCCTGAAAAGCCAGT+TGG | 0.628736 | 4.2:-35305708 | None:intergenic |
| GAATCAAACAGAGACATTGG+TGG | 0.632535 | 4.2:+35305896 | MS.gene062994:CDS |
| TTATATGGCAGTTAAAGAGT+GGG | 0.633057 | 4.2:+35307222 | MS.gene062994:intron |
| TTACTGTTGTGTCTCATGTG+AGG | 0.633538 | 4.2:+35305754 | MS.gene062994:CDS |
| ATTATTGCTAGGAACCATTG+TGG | 0.636556 | 4.2:+35307293 | MS.gene062994:CDS |
| AATGACAAGAAGATCAAACC+AGG | 0.647230 | 4.2:-35305484 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATAATCTTAAACAAAT+GGG | + | chr4.2:35306474-35306493 | MS.gene062994:intron | 10.0% |
| !!! | TTTTTATAATCTTAAACAAA+TGG | + | chr4.2:35306473-35306492 | MS.gene062994:intron | 10.0% |
| !! | AAGAAAAACAATATTAACAA+AGG | - | chr4.2:35305818-35305837 | None:intergenic | 15.0% |
| !! | ATATATCTTACTTGTATAAT+TGG | - | chr4.2:35305388-35305407 | None:intergenic | 15.0% |
| !! | TATAATGAGAAAAAGAAAAT+CGG | + | chr4.2:35306741-35306760 | MS.gene062994:intron | 15.0% |
| !! | TATATCTTACTTGTATAATT+GGG | - | chr4.2:35305387-35305406 | None:intergenic | 15.0% |
| !! | TATTAATCAACATATTTCAT+TGG | - | chr4.2:35305264-35305283 | None:intergenic | 15.0% |
| !!! | AATAACATTTATAATTTGCT+TGG | - | chr4.2:35306640-35306659 | None:intergenic | 15.0% |
| !!! | ACAAGATCAAATAATTTTTT+AGG | - | chr4.2:35306301-35306320 | None:intergenic | 15.0% |
| !!! | TTGTTCGTATTTTTTTAATA+TGG | + | chr4.2:35306792-35306811 | MS.gene062994:intron | 15.0% |
| !! | GCAAATTATAAATGTTATTC+AGG | + | chr4.2:35306641-35306660 | MS.gene062994:intron | 20.0% |
| !! | GTCTTAATATGAAGATAATA+AGG | - | chr4.2:35307085-35307104 | None:intergenic | 20.0% |
| !! | TTAGAATAAAGAGAAATGTT+AGG | + | chr4.2:35305981-35306000 | MS.gene062994:intron | 20.0% |
| !!! | AATCATACAAATTTGAGTTA+GGG | - | chr4.2:35305580-35305599 | None:intergenic | 20.0% |
| !!! | AATGTAGTTTTCTTAATTAC+AGG | + | chr4.2:35305330-35305349 | MS.gene062994:intron | 20.0% |
| !!! | GATTTTCTTTTTCTCATTAT+AGG | - | chr4.2:35306742-35306761 | None:intergenic | 20.0% |
| !!! | TCTTAATTGTTTCTATTTTC+AGG | + | chr4.2:35306542-35306561 | MS.gene062994:intron | 20.0% |
| ! | AAAGAACCTGTAGAATATAA+AGG | - | chr4.2:35305851-35305870 | None:intergenic | 25.0% |
| ! | AATATGAAGATAATAAGGTC+TGG | - | chr4.2:35307080-35307099 | None:intergenic | 25.0% |
| ! | AATGATTATTAACGTTGCTT+TGG | + | chr4.2:35306273-35306292 | MS.gene062994:intron | 25.0% |
| ! | CATTATCCATGATATTTAGA+GGG | + | chr4.2:35306499-35306518 | MS.gene062994:intron | 25.0% |
| ! | CTAATCTATAACAAACAAGA+GGG | - | chr4.2:35305965-35305984 | None:intergenic | 25.0% |
| ! | CTCTAAATATCATGGATAAT+GGG | - | chr4.2:35306500-35306519 | None:intergenic | 25.0% |
| ! | TCTAATCTATAACAAACAAG+AGG | - | chr4.2:35305966-35305985 | None:intergenic | 25.0% |
| ! | TCTTATCCTTTATATTCTAC+AGG | + | chr4.2:35305842-35305861 | MS.gene062994:intron | 25.0% |
| ! | TCTTGATGAATTTATTGAAC+TGG | + | chr4.2:35305619-35305638 | MS.gene062994:intron | 25.0% |
| ! | TGAATGAATAAATGACAACA+CGG | - | chr4.2:35306976-35306995 | None:intergenic | 25.0% |
| ! | TTATGGAAATAGGATGTTTA+TGG | + | chr4.2:35305730-35305749 | MS.gene062994:CDS | 25.0% |
| !! | ATCATACAAATTTGAGTTAG+GGG | - | chr4.2:35305579-35305598 | None:intergenic | 25.0% |
| !! | GAATCATACAAATTTGAGTT+AGG | - | chr4.2:35305581-35305600 | None:intergenic | 25.0% |
| !! | TATTTTTCTTCATTGTCTTG+TGG | - | chr4.2:35307027-35307046 | None:intergenic | 25.0% |
| !! | TCTTTTTCTCATTATAGGAT+GGG | - | chr4.2:35306737-35306756 | None:intergenic | 25.0% |
| !! | TTCTTTTTCTCATTATAGGA+TGG | - | chr4.2:35306738-35306757 | None:intergenic | 25.0% |
| !!! | CAAAATCACTTTTATTCTAG+AGG | - | chr4.2:35306180-35306199 | None:intergenic | 25.0% |
| !!! | CTTAATCTTGTTTTATCTTG+CGG | + | chr4.2:35305872-35305891 | MS.gene062994:CDS | 25.0% |
| !!! | GATAGTTTATGCTTTTTGAA+AGG | - | chr4.2:35306240-35306259 | None:intergenic | 25.0% |
| !!! | TAGTACTACCATTTTTTCTT+GGG | - | chr4.2:35306770-35306789 | None:intergenic | 25.0% |
| !!! | TTAGTACTACCATTTTTTCT+TGG | - | chr4.2:35306771-35306790 | None:intergenic | 25.0% |
| !!! | TTGTATGATTCTAAAGTTAC+TGG | + | chr4.2:35305590-35305609 | MS.gene062994:intron | 25.0% |
| AAGAAACCCTCTAAATATCA+TGG | - | chr4.2:35306508-35306527 | None:intergenic | 30.0% | |
| AGCTTAATCTCTTTCCTAAT+CGG | + | chr4.2:35306591-35306610 | MS.gene062994:intron | 30.0% | |
| ATTTCATCCAATAAGAGAGT+GGG | + | chr4.2:35306115-35306134 | MS.gene062994:intron | 30.0% | |
| CCATTATCCATGATATTTAG+AGG | + | chr4.2:35306498-35306517 | MS.gene062994:intron | 30.0% | |
| CCTCTAAATATCATGGATAA+TGG | - | chr4.2:35306501-35306520 | None:intergenic | 30.0% | |
| CTATTATGTAATACAGAGTG+TGG | + | chr4.2:35307194-35307213 | MS.gene062994:intron | 30.0% | |
| TACATTAATTCAAAGCACAC+AGG | - | chr4.2:35305316-35305335 | None:intergenic | 30.0% | |
| TTATATGGCAGTTAAAGAGT+GGG | + | chr4.2:35307222-35307241 | MS.gene062994:intron | 30.0% | |
| TTATTGGATGAAATCCATGT+GGG | - | chr4.2:35306109-35306128 | None:intergenic | 30.0% | |
| ! | CTTTTTCTCATTATAGGATG+GGG | - | chr4.2:35306736-35306755 | None:intergenic | 30.0% |
| !!! | TTGACGTCAAGGTTTTTTTT+GGG | + | chr4.2:35307105-35307124 | MS.gene062994:intron | 30.0% |
| !!! | TTTTTTTTGGGAGTTAGGAA+GGG | + | chr4.2:35307117-35307136 | MS.gene062994:intron | 30.0% |
| AAGATAATAAGGTCTGGTTG+GGG | - | chr4.2:35307074-35307093 | None:intergenic | 35.0% | |
| AATGACAAGAAGATCAAACC+AGG | - | chr4.2:35305487-35305506 | None:intergenic | 35.0% | |
| ATCGGAATCCCAAGAAAAAA+TGG | + | chr4.2:35306759-35306778 | MS.gene062994:intron | 35.0% | |
| ATGGAAGCAACTACAATCAT+TGG | - | chr4.2:35306854-35306873 | None:intergenic | 35.0% | |
| ATTATTGCTAGGAACCATTG+TGG | + | chr4.2:35307293-35307312 | MS.gene062994:CDS | 35.0% | |
| CATATTAAGACTTGACGTCA+AGG | + | chr4.2:35307094-35307113 | MS.gene062994:intron | 35.0% | |
| CTAACACTCACTCTCTTATT+GGG | + | chr4.2:35306028-35306047 | MS.gene062994:intron | 35.0% | |
| CTAATCGGCACAAGTTTATT+TGG | + | chr4.2:35306606-35306625 | MS.gene062994:intron | 35.0% | |
| CTATAGAGGGAACTAGTAAA+GGG | - | chr4.2:35306942-35306961 | None:intergenic | 35.0% | |
| CTTATTGGATGAAATCCATG+TGG | - | chr4.2:35306110-35306129 | None:intergenic | 35.0% | |
| CTTTAAATGCAGCACTTTCT+TGG | + | chr4.2:35305649-35305668 | MS.gene062994:intron | 35.0% | |
| GAAGATAATAAGGTCTGGTT+GGG | - | chr4.2:35307075-35307094 | None:intergenic | 35.0% | |
| GATTTCATCCAATAAGAGAG+TGG | + | chr4.2:35306114-35306133 | MS.gene062994:intron | 35.0% | |
| GTTATATGGCAGTTAAAGAG+TGG | + | chr4.2:35307221-35307240 | MS.gene062994:intron | 35.0% | |
| TCAGGGCTTATTATGGAAAT+AGG | + | chr4.2:35305720-35305739 | MS.gene062994:CDS | 35.0% | |
| TCTAACACTCACTCTCTTAT+TGG | + | chr4.2:35306027-35306046 | MS.gene062994:intron | 35.0% | |
| TCTATAGAGGGAACTAGTAA+AGG | - | chr4.2:35306943-35306962 | None:intergenic | 35.0% | |
| TGAAGATAATAAGGTCTGGT+TGG | - | chr4.2:35307076-35307095 | None:intergenic | 35.0% | |
| ! | ATGTTATTCAGGTTCGTACA+TGG | + | chr4.2:35306652-35306671 | MS.gene062994:intron | 35.0% |
| ! | GTCTTTTACATCCTTATGAC+TGG | - | chr4.2:35305684-35305703 | None:intergenic | 35.0% |
| !! | CAAATAAACTTGTGCCGATT+AGG | - | chr4.2:35306608-35306627 | None:intergenic | 35.0% |
| !! | TCTAAAAAGCATCAGAAGCA+CGG | - | chr4.2:35305937-35305956 | None:intergenic | 35.0% |
| !! | TTTATTCTAGAGGAGTGCTA+TGG | - | chr4.2:35306170-35306189 | None:intergenic | 35.0% |
| !!! | CAAGGTTTTTTTTGGGAGTT+AGG | + | chr4.2:35307112-35307131 | MS.gene062994:intron | 35.0% |
| !!! | CTTGACGTCAAGGTTTTTTT+TGG | + | chr4.2:35307104-35307123 | MS.gene062994:intron | 35.0% |
| !!! | GTTTTTTTTGGGAGTTAGGA+AGG | + | chr4.2:35307116-35307135 | MS.gene062994:intron | 35.0% |
| ACAAATTCAGCCCAAAAGTC+AGG | - | chr4.2:35305457-35305476 | None:intergenic | 40.0% | |
| AGTATGAGGGATAAGGGAAA+AGG | + | chr4.2:35307169-35307188 | MS.gene062994:intron | 40.0% | |
| ATGTAAAAGACAGCACCAAC+TGG | + | chr4.2:35305693-35305712 | MS.gene062994:CDS | 40.0% | |
| ATGTAATACAGAGTGTGGTG+CGG | + | chr4.2:35307199-35307218 | MS.gene062994:intron | 40.0% | |
| CAAGAACGAGAATAACCTGT+CGG | - | chr4.2:35305205-35305224 | None:intergenic | 40.0% | |
| CAGGCTTAAAATCATAGCGA+CGG | - | chr4.2:35305430-35305449 | None:intergenic | 40.0% | |
| CCTATTACTGAGAGTGAGAA+GGG | - | chr4.2:35305230-35305249 | None:intergenic | 40.0% | |
| CGGCACAAGTTTATTTGGAT+GGG | + | chr4.2:35306611-35306630 | MS.gene062994:intron | 40.0% | |
| GAAATGGATCCCACATAAAG+TGG | - | chr4.2:35306074-35306093 | None:intergenic | 40.0% | |
| GAATCAAACAGAGACATTGG+TGG | + | chr4.2:35305896-35305915 | MS.gene062994:CDS | 40.0% | |
| GATACCAGACTGTCTACAAT+AGG | + | chr4.2:35306905-35306924 | MS.gene062994:intron | 40.0% | |
| GGAGAATCAAACAGAGACAT+TGG | + | chr4.2:35305893-35305912 | MS.gene062994:CDS | 40.0% | |
| GGGTATGCAAGATTATTGCT+AGG | + | chr4.2:35307282-35307301 | MS.gene062994:CDS | 40.0% | |
| GTATGAGGGATAAGGGAAAA+GGG | + | chr4.2:35307170-35307189 | MS.gene062994:intron | 40.0% | |
| TATGAGGGATAAGGGAAAAG+GGG | + | chr4.2:35307171-35307190 | MS.gene062994:intron | 40.0% | |
| TCCTATTACTGAGAGTGAGA+AGG | - | chr4.2:35305231-35305250 | None:intergenic | 40.0% | |
| TCGGCACAAGTTTATTTGGA+TGG | + | chr4.2:35306610-35306629 | MS.gene062994:intron | 40.0% | |
| TCTAACACCCACTCTCTTAT+TGG | - | chr4.2:35306125-35306144 | None:intergenic | 40.0% | |
| TTACTGTTGTGTCTCATGTG+AGG | + | chr4.2:35305754-35305773 | MS.gene062994:CDS | 40.0% | |
| TTATTGGGTGAAACCCATGT+GGG | + | chr4.2:35306043-35306062 | MS.gene062994:intron | 40.0% | |
| TTTGGGCTGAATTTGTGTGA+AGG | + | chr4.2:35305461-35305480 | MS.gene062994:intron | 40.0% | |
| ! | ACCATCCTTTTAAGCGAAGA+GGG | + | chr4.2:35306818-35306837 | MS.gene062994:intron | 40.0% |
| ! | ACCTGTACATTTGAAACCAG+TGG | - | chr4.2:35305531-35305550 | None:intergenic | 40.0% |
| ! | TACCATCCTTTTAAGCGAAG+AGG | + | chr4.2:35306817-35306836 | MS.gene062994:intron | 40.0% |
| !! | TGGCTTTTCAGGGCTTATTA+TGG | + | chr4.2:35305713-35305732 | MS.gene062994:CDS | 40.0% |
| AAATGCAGCACTTTCTTGGC+TGG | + | chr4.2:35305653-35305672 | MS.gene062994:intron | 45.0% | |
| ATAAAGTGGTGAGACCCACA+TGG | - | chr4.2:35306060-35306079 | None:intergenic | 45.0% | |
| ATAAGCCCTGAAAAGCCAGT+TGG | - | chr4.2:35305711-35305730 | None:intergenic | 45.0% | |
| ATGATAGAGGCCTGAGTATG+AGG | + | chr4.2:35307155-35307174 | MS.gene062994:intron | 45.0% | |
| CCCTTCTCACTCTCAGTAAT+AGG | + | chr4.2:35305227-35305246 | MS.gene062994:intron | 45.0% | |
| CTTATTGGGTGAAACCCATG+TGG | + | chr4.2:35306042-35306061 | MS.gene062994:intron | 45.0% | |
| GACTTCCCTCTTCGCTTAAA+AGG | - | chr4.2:35306826-35306845 | None:intergenic | 45.0% | |
| GCTTAAAATCATAGCGACGG+AGG | - | chr4.2:35305427-35305446 | None:intergenic | 45.0% | |
| GTCTACAATAGGCTCGAGTT+TGG | + | chr4.2:35306916-35306935 | MS.gene062994:intron | 45.0% | |
| GTGGAGAATAGCAAAAGCAG+AGG | - | chr4.2:35307008-35307027 | None:intergenic | 45.0% | |
| TAAAGTGGTGAGACCCACAT+GGG | - | chr4.2:35306059-35306078 | None:intergenic | 45.0% | |
| TCATTGCTCGCCTTAGACAT+TGG | + | chr4.2:35305502-35305521 | MS.gene062994:CDS | 45.0% | |
| TCCCTCTTCGCTTAAAAGGA+TGG | - | chr4.2:35306822-35306841 | None:intergenic | 45.0% | |
| TGATAGAGGCCTGAGTATGA+GGG | + | chr4.2:35307156-35307175 | MS.gene062994:intron | 45.0% | |
| TGGGATCCATTTCCAATGTG+TGG | + | chr4.2:35306081-35306100 | MS.gene062994:intron | 45.0% | |
| TGGGTACCACACATTGGAAA+TGG | - | chr4.2:35306090-35306109 | None:intergenic | 45.0% | |
| TGGGTCTCACCACTTTATGT+GGG | + | chr4.2:35306062-35306081 | MS.gene062994:intron | 45.0% | |
| TGTAGTTGCTTCCATGTGAC+TGG | + | chr4.2:35306859-35306878 | MS.gene062994:intron | 45.0% | |
| TTAAGCGAAGAGGGAAGTCT+TGG | + | chr4.2:35306827-35306846 | MS.gene062994:intron | 45.0% | |
| TTCCCTTATCCCTCATACTC+AGG | - | chr4.2:35307168-35307187 | None:intergenic | 45.0% | |
| ! | AAGCCTGTACACCTGACTTT+TGG | + | chr4.2:35305443-35305462 | MS.gene062994:intron | 45.0% |
| ! | AGCCTGTACACCTGACTTTT+GGG | + | chr4.2:35305444-35305463 | MS.gene062994:intron | 45.0% |
| !! | GCCACTGGTTTCAAATGTAC+AGG | + | chr4.2:35305527-35305546 | MS.gene062994:CDS | 45.0% |
| !! | GGTGCTATTCGCTCTATAGA+GGG | - | chr4.2:35306955-35306974 | None:intergenic | 45.0% |
| AGCCCAAAAGTCAGGTGTAC+AGG | - | chr4.2:35305449-35305468 | None:intergenic | 50.0% | |
| AGGATGCTTAGTTGGCAAGG+TGG | + | chr4.2:35307247-35307266 | MS.gene062994:CDS | 50.0% | |
| AGGCCTGAGTATGAGGGATA+AGG | + | chr4.2:35307162-35307181 | MS.gene062994:intron | 50.0% | |
| CAGAGTGTGGTGCGGTTATA+TGG | + | chr4.2:35307207-35307226 | MS.gene062994:intron | 50.0% | |
| CGAGCCTATTGTAGACAGTC+TGG | - | chr4.2:35306912-35306931 | None:intergenic | 50.0% | |
| GAGAGGGGAGAAGATGATAG+AGG | + | chr4.2:35307142-35307161 | MS.gene062994:intron | 50.0% | |
| GAGTTAGGAAGGGAAGAGAG+GGG | + | chr4.2:35307127-35307146 | MS.gene062994:intron | 50.0% | |
| GCTAGGATGCTTAGTTGGCA+AGG | + | chr4.2:35307244-35307263 | MS.gene062994:CDS | 50.0% | |
| GCTGAATTTGTGTGAAGGCC+TGG | + | chr4.2:35305466-35305485 | MS.gene062994:intron | 50.0% | |
| GGAGTTAGGAAGGGAAGAGA+GGG | + | chr4.2:35307126-35307145 | MS.gene062994:intron | 50.0% | |
| GGATGCTTAGTTGGCAAGGT+GGG | + | chr4.2:35307248-35307267 | MS.gene062994:CDS | 50.0% | |
| GGCCTGAGTATGAGGGATAA+GGG | + | chr4.2:35307163-35307182 | MS.gene062994:intron | 50.0% | |
| GTGGGTCTCACCACTTTATG+TGG | + | chr4.2:35306061-35306080 | MS.gene062994:intron | 50.0% | |
| TAGTTGGCAAGGTGGGTGAA+TGG | + | chr4.2:35307255-35307274 | MS.gene062994:CDS | 50.0% | |
| TCCAATGTGTGGTACCCACA+TGG | + | chr4.2:35306092-35306111 | MS.gene062994:intron | 50.0% | |
| TCCATGTGGGTACCACACAT+TGG | - | chr4.2:35306096-35306115 | None:intergenic | 50.0% | |
| ! | TGGCAGTTAAAGAGTGGGCT+AGG | + | chr4.2:35307227-35307246 | MS.gene062994:intron | 50.0% |
| !! | AGTGGGCTAGGATGCTTAGT+TGG | + | chr4.2:35307239-35307258 | MS.gene062994:CDS | 50.0% |
| !! | CGGTGCTATTCGCTCTATAG+AGG | - | chr4.2:35306956-35306975 | None:intergenic | 50.0% |
| !!! | ACAGCACCAACTGGCTTTTC+AGG | + | chr4.2:35305702-35305721 | MS.gene062994:CDS | 50.0% |
| !!! | CAGCACCAACTGGCTTTTCA+GGG | + | chr4.2:35305703-35305722 | MS.gene062994:CDS | 50.0% |
| AGGTCTGGTTGGGGTTCAGT+AGG | - | chr4.2:35307065-35307084 | None:intergenic | 55.0% | |
| CAAGGTGGGTGAATGGCAGT+GGG | + | chr4.2:35307262-35307281 | MS.gene062994:CDS | 55.0% | |
| CCAGTGGCTGCCAATGTCTA+AGG | - | chr4.2:35305515-35305534 | None:intergenic | 55.0% | |
| CCTTAGACATTGGCAGCCAC+TGG | + | chr4.2:35305512-35305531 | MS.gene062994:CDS | 55.0% | |
| CTTCCATGTGACTGGAGCTC+GGG | + | chr4.2:35306867-35306886 | MS.gene062994:intron | 55.0% | |
| GCTTCCATGTGACTGGAGCT+CGG | + | chr4.2:35306866-35306885 | MS.gene062994:intron | 55.0% | |
| GGCTGGCAAAGCCAGTCATA+AGG | + | chr4.2:35305670-35305689 | MS.gene062994:CDS | 55.0% | |
| GGGAGTTAGGAAGGGAAGAG+AGG | + | chr4.2:35307125-35307144 | MS.gene062994:intron | 55.0% | |
| CAACCCGAGCTCCAGTCACA+TGG | - | chr4.2:35306873-35306892 | None:intergenic | 60.0% | |
| CGACGGAGGAACAGCTCGAA+AGG | - | chr4.2:35305413-35305432 | None:intergenic | 60.0% | |
| GCAAGGTGGGTGAATGGCAG+TGG | + | chr4.2:35307261-35307280 | MS.gene062994:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 35305195 | 35307319 | 35305195 | ID=MS.gene062994 |
| chr4.2 | mRNA | 35305195 | 35307319 | 35305195 | ID=MS.gene062994.t1;Parent=MS.gene062994 |
| chr4.2 | exon | 35305195 | 35305208 | 35305195 | ID=MS.gene062994.t1.exon1;Parent=MS.gene062994.t1 |
| chr4.2 | CDS | 35305195 | 35305208 | 35305195 | ID=cds.MS.gene062994.t1;Parent=MS.gene062994.t1 |
| chr4.2 | exon | 35305352 | 35305396 | 35305352 | ID=MS.gene062994.t1.exon2;Parent=MS.gene062994.t1 |
| chr4.2 | CDS | 35305352 | 35305396 | 35305352 | ID=cds.MS.gene062994.t1;Parent=MS.gene062994.t1 |
| chr4.2 | exon | 35305483 | 35305548 | 35305483 | ID=MS.gene062994.t1.exon3;Parent=MS.gene062994.t1 |
| chr4.2 | CDS | 35305483 | 35305548 | 35305483 | ID=cds.MS.gene062994.t1;Parent=MS.gene062994.t1 |
| chr4.2 | exon | 35305661 | 35305775 | 35305661 | ID=MS.gene062994.t1.exon4;Parent=MS.gene062994.t1 |
| chr4.2 | CDS | 35305661 | 35305775 | 35305661 | ID=cds.MS.gene062994.t1;Parent=MS.gene062994.t1 |
| chr4.2 | exon | 35305864 | 35305920 | 35305864 | ID=MS.gene062994.t1.exon5;Parent=MS.gene062994.t1 |
| chr4.2 | CDS | 35305864 | 35305920 | 35305864 | ID=cds.MS.gene062994.t1;Parent=MS.gene062994.t1 |
| chr4.2 | exon | 35307233 | 35307319 | 35307233 | ID=MS.gene062994.t1.exon6;Parent=MS.gene062994.t1 |
| chr4.2 | CDS | 35307233 | 35307319 | 35307233 | ID=cds.MS.gene062994.t1;Parent=MS.gene062994.t1 |
| Gene Sequence |
| Protein sequence |
