AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene056699


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene056699.t1 MTR_4g069850 100.000 206 0 0 1 206 1 206 7.05e-155 427
MS.gene056699.t1 MTR_4g012940 88.406 207 23 1 1 206 1 207 8.37e-137 381
MS.gene056699.t1 MTR_2g101890 85.854 205 28 1 3 206 5 209 3.18e-132 370
MS.gene056699.t1 MTR_1g097420 71.770 209 54 2 1 206 1 207 2.13e-107 307
MS.gene056699.t1 MTR_1g097420 63.559 236 54 3 1 206 1 234 2.36e-101 293
MS.gene056699.t1 MTR_8g092020 66.010 203 68 1 4 206 8 209 2.24e-99 286
MS.gene056699.t1 MTR_6g039490 59.223 206 83 1 1 206 1 205 3.62e-84 249
MS.gene056699.t1 MTR_1452s0010 84.337 83 13 0 28 110 1 83 4.43e-48 153
MS.gene056699.t1 MTR_4g064897 38.462 208 110 5 8 204 12 212 3.79e-43 144
MS.gene056699.t1 MTR_2g005510 38.117 223 107 7 1 199 1 216 6.09e-42 141
MS.gene056699.t1 MTR_1g068740 39.901 203 108 7 2 199 5 198 2.67e-41 139
MS.gene056699.t1 MTR_5g013900 38.756 209 104 6 10 206 11 207 5.49e-41 138
MS.gene056699.t1 MTR_1g068730 39.409 203 109 7 2 199 5 198 1.04e-40 138
MS.gene056699.t1 MTR_2g005500 41.071 168 92 3 8 175 9 169 2.51e-40 136
MS.gene056699.t1 MTR_2g014990 37.619 210 110 7 8 204 13 214 4.21e-40 136
MS.gene056699.t1 MTR_7g100020 40.415 193 105 6 8 199 15 198 4.28e-40 136
MS.gene056699.t1 MTR_2g096550 42.262 168 92 4 8 175 15 177 7.21e-40 135
MS.gene056699.t1 MTR_1g115325 40.206 194 100 6 8 201 15 192 9.76e-40 135
MS.gene056699.t1 MTR_4g098950 37.981 208 106 6 10 206 11 206 1.20e-39 135
MS.gene056699.t1 MTR_4g088090 36.190 210 113 7 8 204 13 214 7.67e-39 133
MS.gene056699.t1 MTR_3g069510 39.881 168 94 3 8 175 12 172 1.91e-38 132
MS.gene056699.t1 MTR_8g090215 39.024 205 109 6 10 206 11 207 2.18e-38 132
MS.gene056699.t1 MTR_7g081700 37.500 200 114 5 8 204 8 199 3.36e-38 131
MS.gene056699.t1 MTR_3g087160 38.235 204 111 4 10 206 11 206 5.13e-38 130
MS.gene056699.t1 MTR_8g006970 38.000 200 114 5 8 204 22 214 8.04e-38 130
MS.gene056699.t1 MTR_1686s0010 68.750 80 25 0 28 107 1 80 1.18e-37 126
MS.gene056699.t1 MTR_4g079350 35.238 210 115 7 8 204 13 214 1.67e-37 130
MS.gene056699.t1 MTR_1g052475 38.503 187 108 3 8 194 15 194 2.74e-36 127
MS.gene056699.t1 MTR_8g006970 40.964 166 91 4 8 173 8 166 4.66e-36 125
MS.gene056699.t1 MTR_4g063160 38.693 199 110 7 8 203 15 204 5.68e-36 125
MS.gene056699.t1 MTR_6g021790 39.766 171 96 3 8 178 6 169 5.98e-36 125
MS.gene056699.t1 MTR_8g036220 41.358 162 88 4 8 169 16 170 9.07e-36 125
MS.gene056699.t1 MTR_8g103550 39.412 170 96 3 10 179 11 173 2.26e-35 124
MS.gene056699.t1 MTR_2g075950 34.450 209 118 7 8 204 13 214 3.83e-35 124
MS.gene056699.t1 MTR_3g086980 35.714 196 117 4 8 203 16 202 8.22e-35 123
MS.gene056699.t1 MTR_7g405790 36.310 168 100 3 8 175 15 175 1.11e-34 122
MS.gene056699.t1 MTR_2g090865 34.928 209 116 7 8 204 11 211 1.90e-34 122
MS.gene056699.t1 MTR_0262s0050 40.606 165 91 3 8 172 15 172 2.38e-34 122
MS.gene056699.t1 MTR_2g027660 36.683 199 116 4 8 203 6 197 2.81e-34 121
MS.gene056699.t1 MTR_3g064390 38.788 165 94 3 10 174 12 169 4.28e-34 120
MS.gene056699.t1 MTR_5g076590 38.182 165 95 3 10 174 12 169 1.89e-33 119
MS.gene056699.t1 MTR_8g031680 38.824 170 97 3 9 178 7 169 2.40e-33 119
MS.gene056699.t1 MTR_8g089985 36.364 165 98 3 8 172 17 174 2.47e-33 119
MS.gene056699.t1 MTR_1g078200 36.310 168 100 3 8 175 14 174 4.53e-33 118
MS.gene056699.t1 MTR_2g083860 36.970 165 97 2 8 172 13 170 5.67e-33 118
MS.gene056699.t1 MTR_8g027220 33.937 221 124 6 1 206 19 232 1.08e-32 117
MS.gene056699.t1 MTR_7g051940 35.119 168 102 3 8 175 13 173 1.31e-32 117
MS.gene056699.t1 MTR_6g079550 37.654 162 94 3 8 169 12 166 2.44e-32 116
MS.gene056699.t1 MTR_1663s0010 65.333 75 26 0 110 184 1 75 8.96e-32 110
MS.gene056699.t1 MTR_8g031870 35.882 170 102 3 5 174 3 165 1.11e-31 114
MS.gene056699.t1 MTR_8g031660 35.176 199 114 4 8 206 6 189 3.53e-31 113
MS.gene056699.t1 MTR_8g107070 37.654 162 94 3 8 169 14 168 1.06e-30 113
MS.gene056699.t1 MTR_1g068730 41.353 133 70 3 2 130 5 133 1.63e-30 110
MS.gene056699.t1 MTR_1g068740 41.353 133 70 3 2 130 5 133 3.76e-30 110
MS.gene056699.t1 MTR_8g093740 36.416 173 102 5 8 179 13 178 4.05e-30 110
MS.gene056699.t1 MTR_1g094220 35.928 167 99 4 9 174 32 191 6.41e-30 109
MS.gene056699.t1 MTR_7g117910 38.514 148 83 3 8 155 20 159 1.21e-29 109
MS.gene056699.t1 MTR_4g099470 40.559 143 78 3 33 175 9 144 1.41e-29 108
MS.gene056699.t1 MTR_1g029450 36.416 173 102 5 8 179 17 182 5.86e-29 107
MS.gene056699.t1 MTR_1g094220 35.152 165 99 4 9 172 32 189 1.86e-28 106
MS.gene056699.t1 MTR_8g031830 35.976 164 98 3 5 168 3 159 5.89e-28 104
MS.gene056699.t1 MTR_1g094220 34.756 164 99 4 9 171 32 188 1.72e-27 104
MS.gene056699.t1 MTR_1g094220 34.756 164 99 4 9 171 32 188 1.75e-27 103
MS.gene056699.t1 MTR_1g090717 35.567 194 114 6 9 200 16 200 2.25e-27 103
MS.gene056699.t1 MTR_7g103070 36.970 165 97 5 10 173 18 176 3.46e-27 103
MS.gene056699.t1 MTR_2g102060 34.104 173 107 4 2 174 4 169 5.46e-27 102
MS.gene056699.t1 MTR_3g096350 34.682 173 105 5 2 173 6 171 9.48e-27 102
MS.gene056699.t1 MTR_3g064390 39.669 121 69 1 10 130 12 128 1.32e-26 100
MS.gene056699.t1 MTR_1g062760 32.642 193 114 6 9 200 15 192 3.15e-26 100
MS.gene056699.t1 MTR_1812s0010 58.209 67 28 0 111 177 2 68 6.00e-24 90.9
MS.gene056699.t1 MTR_3g107713 31.214 173 95 6 9 174 14 169 1.43e-22 91.3
MS.gene056699.t1 MTR_3g107707 31.214 173 95 6 9 174 14 169 1.48e-22 91.3
MS.gene056699.t1 MTR_3g107717 31.214 173 95 6 9 174 14 169 1.55e-22 91.3
MS.gene056699.t1 MTR_3g096350 37.500 128 75 3 2 128 6 129 2.34e-22 89.0
MS.gene056699.t1 MTR_3g096350 37.500 128 75 3 2 128 6 129 4.46e-22 88.2
MS.gene056699.t1 MTR_8g093740 35.915 142 84 4 39 179 10 145 7.63e-22 88.2
MS.gene056699.t1 MTR_6g087980 29.612 206 122 5 8 204 6 197 3.03e-20 84.7
MS.gene056699.t1 MTR_5g036990 51.087 92 40 3 39 129 32 119 8.50e-19 78.6
MS.gene056699.t1 MTR_4g088055 30.168 179 110 4 8 177 6 178 5.28e-18 78.6
MS.gene056699.t1 MTR_2g093510 61.194 67 26 0 119 185 761 827 8.53e-18 81.3
MS.gene056699.t1 MTR_2g090875 29.050 179 112 4 8 177 6 178 5.23e-17 75.9
MS.gene056699.t1 MTR_7g103070 33.103 145 82 5 57 200 9 139 7.04e-17 74.7
MS.gene056699.t1 MTR_4g113620 27.711 166 101 5 9 174 14 160 1.10e-16 75.5
MS.gene056699.t1 MTR_5g022600 29.050 179 112 5 8 177 6 178 1.49e-16 74.7
MS.gene056699.t1 MTR_8g075240 29.609 179 111 5 8 177 6 178 2.84e-16 73.9
MS.gene056699.t1 MTR_4g073250 26.882 186 121 4 8 184 6 185 3.92e-16 73.6
MS.gene056699.t1 MTR_3g078260 28.497 193 123 4 1 184 1 187 4.09e-16 73.9
MS.gene056699.t1 MTR_3g078260 33.594 128 78 3 1 127 1 122 4.71e-14 67.0
MS.gene056699.t1 MTR_8g091980 25.532 188 106 5 9 169 22 202 2.72e-11 62.0
MS.gene056699.t1 MTR_8g091980 26.286 175 100 4 9 156 22 194 2.85e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene056699.t1 AT3G18820 93.204 206 14 0 1 206 1 206 1.67e-145 403
MS.gene056699.t1 AT1G49300 89.320 206 22 0 1 206 1 206 1.49e-139 388
MS.gene056699.t1 AT1G49300 89.320 206 22 0 1 206 1 206 1.49e-139 388
MS.gene056699.t1 AT1G52280 83.981 206 33 0 1 206 1 206 1.42e-130 365
MS.gene056699.t1 AT3G16100 82.524 206 36 0 1 206 1 206 4.12e-130 364
MS.gene056699.t1 AT4G09720 70.874 206 60 0 1 206 1 206 4.10e-111 316
MS.gene056699.t1 AT4G09720 69.194 211 60 1 1 206 1 211 1.13e-107 308
MS.gene056699.t1 AT4G09720 67.281 217 60 1 1 206 1 217 1.89e-107 307
MS.gene056699.t1 AT1G22740 71.014 207 55 2 1 206 1 203 4.14e-106 303
MS.gene056699.t1 AT2G21880 64.762 210 65 2 4 206 5 212 1.09e-97 283
MS.gene056699.t1 AT2G21880 60.952 210 65 3 4 206 5 204 5.38e-88 258
MS.gene056699.t1 AT4G09720 67.836 171 55 0 36 206 2 172 6.85e-87 254
MS.gene056699.t1 AT4G09720 67.836 171 55 0 36 206 2 172 6.85e-87 254
MS.gene056699.t1 AT4G09720 67.836 171 55 0 36 206 2 172 6.85e-87 254
MS.gene056699.t1 AT2G21880 62.434 189 62 2 25 206 1 187 1.82e-83 246
MS.gene056699.t1 AT2G21880 62.434 189 62 2 25 206 1 187 1.82e-83 246
MS.gene056699.t1 AT5G39620 58.721 172 71 0 6 177 3 174 1.44e-72 219
MS.gene056699.t1 AT5G59840 39.594 197 112 5 8 203 15 205 1.13e-41 140
MS.gene056699.t1 AT3G53610 40.104 192 108 5 8 198 15 200 7.07e-41 138
MS.gene056699.t1 AT3G53610 40.104 192 108 5 8 198 15 200 7.07e-41 138
MS.gene056699.t1 AT3G53610 40.104 192 108 5 8 198 15 200 7.07e-41 138
MS.gene056699.t1 AT1G09630 40.936 171 94 3 8 178 12 175 7.67e-41 138
MS.gene056699.t1 AT1G28550 36.190 210 114 6 8 204 13 215 1.23e-40 138
MS.gene056699.t1 AT2G33870 36.190 210 114 6 8 204 13 215 1.48e-40 137
MS.gene056699.t1 AT3G46060 38.579 197 114 5 8 203 15 205 2.29e-40 137
MS.gene056699.t1 AT3G46060 38.579 197 114 5 8 203 15 205 2.29e-40 137
MS.gene056699.t1 AT3G46060 38.579 197 114 5 8 203 15 205 2.29e-40 137
MS.gene056699.t1 AT2G44610 38.571 210 104 6 10 206 11 208 4.97e-40 136
MS.gene056699.t1 AT4G18430 35.238 210 115 7 8 204 13 214 2.32e-39 134
MS.gene056699.t1 AT3G11730 41.011 178 98 3 1 178 1 171 5.60e-39 133
MS.gene056699.t1 AT5G60860 36.667 210 112 7 8 204 13 214 1.09e-38 133
MS.gene056699.t1 AT3G15060 36.190 210 113 7 8 204 13 214 1.47e-38 132
MS.gene056699.t1 AT5G59150 39.394 165 93 3 8 172 12 169 2.14e-38 132
MS.gene056699.t1 AT5G45750 36.364 209 113 8 8 204 13 213 2.22e-38 132
MS.gene056699.t1 AT4G17530 37.186 199 116 4 8 204 8 199 3.03e-38 131
MS.gene056699.t1 AT1G07410 35.577 208 115 6 8 204 12 211 3.21e-38 131
MS.gene056699.t1 AT3G12160 39.474 190 108 3 8 197 15 197 3.89e-38 131
MS.gene056699.t1 AT3G46830 40.000 165 92 3 8 172 12 169 5.96e-38 131
MS.gene056699.t1 AT3G46830 40.000 165 92 3 8 172 12 169 5.96e-38 131
MS.gene056699.t1 AT5G47200 37.186 199 116 4 8 204 8 199 6.10e-38 130
MS.gene056699.t1 AT5G03520 42.697 178 92 5 2 175 5 176 1.71e-37 130
MS.gene056699.t1 AT5G64990 39.234 209 104 6 10 206 9 206 2.71e-37 129
MS.gene056699.t1 AT3G09900 42.697 178 92 5 2 175 5 176 8.04e-37 128
MS.gene056699.t1 AT4G35860 39.766 171 96 3 8 178 6 169 2.13e-36 127
MS.gene056699.t1 AT1G02130 36.000 200 118 5 8 204 8 200 2.95e-36 126
MS.gene056699.t1 AT4G18800 36.957 184 99 4 8 182 13 188 3.87e-36 126
MS.gene056699.t1 AT5G10260 37.019 208 109 6 10 206 11 207 9.43e-36 125
MS.gene056699.t1 AT1G05810 33.645 214 124 5 4 206 8 214 1.22e-35 125
MS.gene056699.t1 AT1G05810 33.645 214 124 5 4 206 54 260 3.10e-35 125
MS.gene056699.t1 AT5G47960 34.906 212 116 5 8 204 15 219 3.32e-35 124
MS.gene056699.t1 AT1G16920 34.135 208 119 7 8 204 13 213 4.74e-35 123
MS.gene056699.t1 AT2G31680 35.714 168 101 3 8 175 12 172 1.29e-34 122
MS.gene056699.t1 AT4G17170 36.683 199 116 4 8 203 6 197 1.36e-34 122
MS.gene056699.t1 AT4G39990 35.052 194 114 4 8 201 17 198 1.44e-34 122
MS.gene056699.t1 AT5G64990 37.963 216 104 7 10 206 9 213 1.49e-34 122
MS.gene056699.t1 AT1G06400 37.576 165 96 3 8 172 13 170 1.96e-34 122
MS.gene056699.t1 AT1G73640 39.506 162 91 3 8 169 13 167 3.26e-34 122
MS.gene056699.t1 AT5G65270 35.676 185 104 4 8 184 17 194 3.38e-34 121
MS.gene056699.t1 AT4G17160 38.824 170 97 3 9 178 7 169 5.88e-34 120
MS.gene056699.t1 AT4G39890 38.182 165 96 2 9 173 10 168 1.61e-33 119
MS.gene056699.t1 AT1G18200 39.394 165 93 4 8 172 13 170 2.03e-33 119
MS.gene056699.t1 AT1G01200 37.278 169 100 2 1 169 21 183 2.15e-33 120
MS.gene056699.t1 AT2G22290 35.294 204 116 4 10 206 11 205 5.98e-33 117
MS.gene056699.t1 AT2G43130 35.714 168 101 3 8 175 12 172 6.16e-33 118
MS.gene056699.t1 AT4G19640 36.066 183 107 4 10 189 12 187 1.02e-32 117
MS.gene056699.t1 AT5G45130 37.576 165 96 3 10 174 12 169 1.19e-32 117
MS.gene056699.t1 AT5G47520 35.714 168 101 3 8 175 14 174 6.14e-32 115
MS.gene056699.t1 AT3G07410 34.524 168 103 3 8 175 12 172 7.03e-32 115
MS.gene056699.t1 AT5G45130 37.423 163 95 3 12 174 22 177 2.00e-31 114
MS.gene056699.t1 AT3G54840 34.659 176 106 5 1 174 25 193 2.02e-29 108
MS.gene056699.t1 AT1G43890 36.416 173 102 5 8 179 13 178 3.76e-29 108
MS.gene056699.t1 AT1G43890 36.416 173 102 5 8 179 13 178 3.76e-29 108
MS.gene056699.t1 AT1G43890 36.416 173 102 5 8 179 13 178 3.76e-29 108
MS.gene056699.t1 AT3G54840 35.152 165 99 4 11 174 2 159 9.27e-29 105
MS.gene056699.t1 AT3G54840 34.302 172 104 5 1 170 25 189 3.03e-28 105
MS.gene056699.t1 AT5G03520 44.697 132 67 4 44 175 41 166 3.41e-28 105
MS.gene056699.t1 AT5G03530 34.896 192 109 7 10 200 15 191 2.48e-27 103
MS.gene056699.t1 AT5G03530 34.896 192 109 7 10 200 15 191 2.48e-27 103
MS.gene056699.t1 AT4G19640 37.226 137 81 2 10 146 12 143 3.51e-27 101
MS.gene056699.t1 AT4G19640 39.167 120 69 1 10 129 12 127 5.26e-26 99.8
MS.gene056699.t1 AT5G59150 39.024 123 68 3 50 172 3 118 9.51e-24 93.2
MS.gene056699.t1 AT4G35860 40.476 126 67 4 50 174 2 120 5.21e-23 90.9
MS.gene056699.t1 AT5G55190 31.214 173 95 6 9 174 14 169 1.65e-22 91.3
MS.gene056699.t1 AT5G20010 31.214 173 95 6 9 174 14 169 1.73e-22 91.3
MS.gene056699.t1 AT5G20020 31.214 173 95 6 9 174 14 169 1.89e-22 90.9
MS.gene056699.t1 AT3G09910 31.606 193 116 6 9 200 14 191 1.50e-21 88.2
MS.gene056699.t1 AT3G09910 31.606 193 116 6 9 200 14 191 1.50e-21 88.2
MS.gene056699.t1 AT3G09910 31.606 193 116 6 9 200 14 191 1.50e-21 88.2
MS.gene056699.t1 AT5G55080 29.101 189 120 4 9 193 14 192 1.63e-21 88.6
MS.gene056699.t1 AT4G28950 31.351 185 114 5 8 185 6 184 6.70e-21 86.7
MS.gene056699.t1 AT3G09910 34.337 166 101 5 9 173 14 172 6.76e-21 86.3
MS.gene056699.t1 AT3G09910 34.337 166 101 5 9 173 14 172 6.76e-21 86.3
MS.gene056699.t1 AT5G45970 28.889 180 113 4 8 178 6 179 1.27e-17 77.8
MS.gene056699.t1 AT5G62880 29.947 187 116 4 1 178 1 181 2.29e-17 77.4
MS.gene056699.t1 AT3G48040 29.947 187 116 4 1 178 1 181 2.12e-16 74.7
MS.gene056699.t1 AT4G35020 28.889 180 113 4 8 178 6 179 4.36e-16 73.6
MS.gene056699.t1 AT4G35020 28.889 180 113 4 8 178 6 179 4.36e-16 73.6
MS.gene056699.t1 AT4G35020 28.889 180 113 4 8 178 6 179 4.36e-16 73.6
MS.gene056699.t1 AT1G20090 28.495 186 115 5 1 177 1 177 1.10e-15 72.4
MS.gene056699.t1 AT2G44690 27.778 180 115 4 8 178 18 191 1.65e-15 72.4
MS.gene056699.t1 AT5G09910 27.168 173 97 4 9 154 23 193 2.18e-15 73.6
MS.gene056699.t1 AT5G09910 27.168 173 97 4 9 154 23 193 2.18e-15 73.6
MS.gene056699.t1 AT1G75840 27.933 179 114 4 8 177 6 178 2.39e-15 71.6
MS.gene056699.t1 AT5G62880 34.615 130 78 4 1 129 1 124 2.63e-15 71.2
MS.gene056699.t1 AT3G51300 28.492 179 113 4 8 177 6 178 3.39e-15 71.2
MS.gene056699.t1 AT2G17800 28.492 179 113 4 8 177 6 178 5.28e-15 70.9
MS.gene056699.t1 AT2G17800 28.492 179 113 4 8 177 6 178 5.28e-15 70.9
MS.gene056699.t1 AT3G48040 34.615 130 78 4 1 129 1 124 6.35e-15 70.1
MS.gene056699.t1 AT4G35950 28.492 179 113 4 8 177 6 178 7.98e-15 70.1
MS.gene056699.t1 AT5G64813 27.513 189 102 7 9 169 23 204 3.03e-14 70.5
MS.gene056699.t1 AT5G64813 27.513 189 102 7 9 169 23 204 3.03e-14 70.5
MS.gene056699.t1 AT5G64813 27.513 189 102 7 9 169 23 204 3.03e-14 70.5
MS.gene056699.t1 AT4G35020 31.405 121 76 3 8 127 6 120 1.96e-12 62.8
MS.gene056699.t1 AT4G35020 31.405 121 76 3 8 127 6 120 1.96e-12 62.8

Find 57 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGCAGATGTCTCAAAATA+TGG 0.180049 4.3:-35633903 None:intergenic
ATCTTCAAATTGCACTTCTT+TGG 0.266812 4.3:-35632356 None:intergenic
TTCGACATTAATACCTTCTT+TGG 0.296445 4.3:-35633922 None:intergenic
GGGCATCCTTTGCTATGGTT+TGG 0.331267 4.3:-35633953 None:intergenic
AAGAAGTGCAATTTGAAGAT+AGG 0.335741 4.3:+35632359 MS.gene056699:CDS
ATTCCTCCCTCCAGTTGTTA+AGG 0.391109 4.3:-35633495 None:intergenic
CTCTTGAAAGTCATCATTCT+CGG 0.403803 4.3:+35631221 MS.gene056699:CDS
CATTTGACAACCTTAACAAC+TGG 0.410397 4.3:+35633485 MS.gene056699:CDS
AGAAAGCAACTCCTAGGCTT+TGG 0.417205 4.3:-35633411 None:intergenic
AGCAATCAGCCAAGGTCATC+AGG 0.423555 4.3:+35634443 MS.gene056699:CDS
CTTTCAAGAGCGTTCTTCTA+CGG 0.436158 4.3:-35631208 None:intergenic
GCAAAGGATGCCCTGAAAAG+TGG 0.450910 4.3:+35633963 MS.gene056699:CDS
TTGTTTCCTATAACAACAAA+AGG 0.451159 4.3:-35633666 None:intergenic
ACAACAAAAGGAAAATTCTC+TGG 0.451708 4.3:-35633654 None:intergenic
TTTCCAACATCAATTGTGTC+TGG 0.462911 4.3:-35634419 None:intergenic
TGCACAGGTTTCAGAAAAGA+AGG 0.467310 4.3:+35633848 MS.gene056699:intron
TTTCAGGGCATCCTTTGCTA+TGG 0.470505 4.3:-35633958 None:intergenic
CTAGGCTTTGGAATCTCTCC+TGG 0.472910 4.3:-35633399 None:intergenic
TAGGAGTTGCTTTCTATCGT+GGG 0.475937 4.3:+35633419 MS.gene056699:CDS
TGGCAGATGTCTCAAAATAT+GGG 0.483704 4.3:-35633902 None:intergenic
TTTGAGACATCTGCCAAAGA+AGG 0.487428 4.3:+35633909 MS.gene056699:CDS
TTTCAAGAGCGTTCTTCTAC+GGG 0.490904 4.3:-35631207 None:intergenic
GGAAAATTCTCTGGATCGGA+AGG 0.495526 4.3:-35633645 None:intergenic
CGGGCATGGTGTGCAGCAAA+AGG 0.496942 4.3:+35633873 MS.gene056699:CDS
CAACATCAATTGTGTCTGGC+AGG 0.497094 4.3:-35634415 None:intergenic
TGCCCTGAAAAGTGGGGAAG+AGG 0.506394 4.3:+35633971 MS.gene056699:CDS
GGAAACAAGATCGACATTGA+TGG 0.507185 4.3:+35633681 MS.gene056699:CDS
GATTTGGGATACAGCTGGCC+AGG 0.507917 4.3:+35633381 MS.gene056699:intron
GGTTAAGAAGTCAGCTCCAA+TGG 0.508254 4.3:-35632335 None:intergenic
CTAGGAGTTGCTTTCTATCG+TGG 0.516699 4.3:+35633418 MS.gene056699:CDS
AATCAGTACAAGGCAACCAT+TGG 0.525698 4.3:+35632319 MS.gene056699:CDS
GCACCATTCACAAACCTGTA+AGG 0.531833 4.3:-35632389 None:intergenic
TTGCAGATTTGGGATACAGC+TGG 0.533863 4.3:+35633376 MS.gene056699:intron
CAAAGGATGCCCTGAAAAGT+GGG 0.534379 4.3:+35633964 MS.gene056699:CDS
AGGTTTCAGAAAAGAAGGCT+CGG 0.540140 4.3:+35633853 MS.gene056699:intron
TCATCATTCTCGGTGACAGC+GGG 0.542655 4.3:+35631231 MS.gene056699:CDS
AAAAGGAAAATTCTCTGGAT+CGG 0.543661 4.3:-35633649 None:intergenic
CTGCCAGACACAATTGATGT+TGG 0.557538 4.3:+35634416 MS.gene056699:CDS
GGTTTCAGAAAAGAAGGCTC+GGG 0.559631 4.3:+35633854 MS.gene056699:intron
CACTCACATCCTGATGACCT+TGG 0.564551 4.3:-35634452 None:intergenic
CACGATAGAAAGCAACTCCT+AGG 0.569261 4.3:-35633417 None:intergenic
TTGACAACCTTAACAACTGG+AGG 0.575421 4.3:+35633488 MS.gene056699:CDS
CAGGAGAGATTCCAAAGCCT+AGG 0.576665 4.3:+35633400 MS.gene056699:CDS
AACAAGATCGACATTGATGG+TGG 0.578098 4.3:+35633684 MS.gene056699:CDS
CGAAGGATACTGATTCATCA+AGG 0.583345 4.3:-35631937 None:intergenic
AAGAGCGTTCTTCTACGGGA+AGG 0.590281 4.3:-35631203 None:intergenic
AGCATTCCAAACCATAGCAA+AGG 0.595720 4.3:+35633947 MS.gene056699:CDS
GTCATCATTCTCGGTGACAG+CGG 0.607687 4.3:+35631230 MS.gene056699:CDS
CAGAAAAGAAGGCTCGGGCA+TGG 0.609079 4.3:+35633859 MS.gene056699:CDS
AGGAGTTGCTTTCTATCGTG+GGG 0.614079 4.3:+35633420 MS.gene056699:CDS
GAAGTTTAGTAATCAGTACA+AGG 0.614358 4.3:+35632309 MS.gene056699:CDS
TTGGAAACAGCAATCAGCCA+AGG 0.645424 4.3:+35634435 MS.gene056699:CDS
ACAAGATCGACATTGATGGT+GGG 0.651715 4.3:+35633685 MS.gene056699:CDS
TGACAACCTTAACAACTGGA+GGG 0.655521 4.3:+35633489 MS.gene056699:CDS
TGATGGTGGGAACAGTAGAG+TGG 0.665695 4.3:+35633698 MS.gene056699:CDS
CAACCTTAACAACTGGAGGG+AGG 0.688480 4.3:+35633492 MS.gene056699:CDS
AAAGGATGCCCTGAAAAGTG+GGG 0.713593 4.3:+35633965 MS.gene056699:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATGATAATTATGATTAT+CGG - chr4.3:35631290-35631309 None:intergenic 10.0%
!! TTAAAATTATCAATAAAAAC+AGG - chr4.3:35633301-35633320 None:intergenic 10.0%
!!! TTGATAATTTTAAGTTAAAA+TGG + chr4.3:35633308-35633327 MS.gene056699:intron 10.0%
!! ACTTAATTTATAGAATTGTT+TGG + chr4.3:35631787-35631806 MS.gene056699:intron 15.0%
!! ATAAACATTCAAAACAAAAA+GGG - chr4.3:35632505-35632524 None:intergenic 15.0%
!! ATATATAGATTGAATCTAAT+GGG + chr4.3:35633030-35633049 MS.gene056699:intron 15.0%
!! ATTGAAAACAAATATAGAAT+CGG - chr4.3:35632185-35632204 None:intergenic 15.0%
!! CTATAAGTAACTTAATTTAT+AGG + chr4.3:35631454-35631473 MS.gene056699:intron 15.0%
!!! TTCACATATCTAAAATATAT+AGG - chr4.3:35632286-35632305 None:intergenic 15.0%
!! AAACATAACATCAATAACAT+TGG - chr4.3:35634352-35634371 None:intergenic 20.0%
!! AAAGAATAAAAATAAGCAGA+AGG - chr4.3:35631338-35631357 None:intergenic 20.0%
!! AAATCAACTTAACATTAACA+TGG - chr4.3:35631823-35631842 None:intergenic 20.0%
!! CATAAAAAATGCATTAAGTT+AGG + chr4.3:35634051-35634070 MS.gene056699:intron 20.0%
!! GATAAACATTCAAAACAAAA+AGG - chr4.3:35632506-35632525 None:intergenic 20.0%
!! GATATATAGATTGAATCTAA+TGG + chr4.3:35633029-35633048 MS.gene056699:intron 20.0%
!! TATATAGATTGAATCTAATG+GGG + chr4.3:35633031-35633050 MS.gene056699:intron 20.0%
!! TGTATTGCATTATTTGAAAA+CGG + chr4.3:35632826-35632845 MS.gene056699:intron 20.0%
!!! AATTTTCCTTTTGTTGTTAT+AGG + chr4.3:35633660-35633679 MS.gene056699:CDS 20.0%
!!! ATCTTTCTGTTATTTGATAA+TGG + chr4.3:35634311-35634330 MS.gene056699:intron 20.0%
!!! ATGTTATTGATGTTATGTTT+TGG + chr4.3:35634352-35634371 MS.gene056699:intron 20.0%
!!! GAATTTTTCTTGTAATTGTT+TGG + chr4.3:35631740-35631759 MS.gene056699:intron 20.0%
!!! GTTTATGCTTTAAAAATATG+CGG + chr4.3:35632242-35632261 MS.gene056699:intron 20.0%
!!! TCATTTTCACAAATTATCAA+CGG - chr4.3:35631544-35631563 None:intergenic 20.0%
!!! TCATTTTTCTTATTCTTGTT+TGG + chr4.3:35631416-35631435 MS.gene056699:intron 20.0%
!!! TCTTTCTGTTATTTGATAAT+GGG + chr4.3:35634312-35634331 MS.gene056699:intron 20.0%
!!! TGTTATTGATGTTATGTTTT+GGG + chr4.3:35634353-35634372 MS.gene056699:intron 20.0%
!!! TTTTTTTCTTCTTCTTAACA+TGG + chr4.3:35631878-35631897 MS.gene056699:intron 20.0%
! AAACATGTTAGATAGAAAAG+GGG - chr4.3:35633736-35633755 None:intergenic 25.0%
! ACAGAAAGATTCATAATCTA+TGG - chr4.3:35634301-35634320 None:intergenic 25.0%
! AGAAACATGTTAGATAGAAA+AGG - chr4.3:35633738-35633757 None:intergenic 25.0%
! ATAGGATTGATGTTTAATGA+TGG + chr4.3:35634151-35634170 MS.gene056699:intron 25.0%
! ATCTTTCTGATATTACTAGA+TGG + chr4.3:35632523-35632542 MS.gene056699:intron 25.0%
! ATTCTAAATCTTGCAGATTT+GGG + chr4.3:35633366-35633385 MS.gene056699:intron 25.0%
! CAAATAATGCAATACACTTT+AGG - chr4.3:35632822-35632841 None:intergenic 25.0%
! CAGAAAGATTCATAATCTAT+GGG - chr4.3:35634300-35634319 None:intergenic 25.0%
! GAAACATGTTAGATAGAAAA+GGG - chr4.3:35633737-35633756 None:intergenic 25.0%
! GTATTGCATTATTTGAAAAC+GGG + chr4.3:35632827-35632846 MS.gene056699:intron 25.0%
! TACATATATGTGCAAACTAA+CGG - chr4.3:35632973-35632992 None:intergenic 25.0%
! TCAAAATCAAATTAAGCACA+AGG - chr4.3:35632417-35632436 None:intergenic 25.0%
! TGATATTACTAGATGGTTTA+TGG + chr4.3:35632530-35632549 MS.gene056699:intron 25.0%
! TTGTACTAAATAGTGTATTG+TGG - chr4.3:35632067-35632086 None:intergenic 25.0%
! TTGTTAATTAGCGAATATAC+CGG + chr4.3:35631994-35632013 MS.gene056699:intron 25.0%
! TTGTTTCCTATAACAACAAA+AGG - chr4.3:35633669-35633688 None:intergenic 25.0%
!! ATTTTCACTGCAATTTTCTA+AGG + chr4.3:35632203-35632222 MS.gene056699:intron 25.0%
!! GATTTTATTGAAGAATTCGT+AGG + chr4.3:35632661-35632680 MS.gene056699:intron 25.0%
!! TCAATCTTTTCATCATAACA+TGG - chr4.3:35634197-35634216 None:intergenic 25.0%
!! TGGTTTGTCTTATATAATAG+TGG + chr4.3:35634222-35634241 MS.gene056699:intron 25.0%
!!! CTAAGGTTTTAGTATTGTAT+AGG + chr4.3:35632220-35632239 MS.gene056699:intron 25.0%
!!! CTATATTTTGATGATTGTCT+TGG + chr4.3:35632912-35632931 MS.gene056699:intron 25.0%
AAAAGGAAAATTCTCTGGAT+CGG - chr4.3:35633652-35633671 None:intergenic 30.0%
AACAATTTCTCAAAAACGAC+AGG - chr4.3:35632890-35632909 None:intergenic 30.0%
ACAACAAAAGGAAAATTCTC+TGG - chr4.3:35633657-35633676 None:intergenic 30.0%
ACAAGAATCATATCTAGACA+TGG + chr4.3:35631502-35631521 MS.gene056699:intron 30.0%
ACTTAATCCAATGAACTACT+AGG - chr4.3:35632759-35632778 None:intergenic 30.0%
ACTTCCTATACAAAAATCGA+AGG - chr4.3:35631957-35631976 None:intergenic 30.0%
ATCTTCAAATTGCACTTCTT+TGG - chr4.3:35632359-35632378 None:intergenic 30.0%
CATTCAAAACAAAAAGGGTT+TGG - chr4.3:35632500-35632519 None:intergenic 30.0%
CATTCTAAATCTTGCAGATT+TGG + chr4.3:35633365-35633384 MS.gene056699:intron 30.0%
CTCTTGGAAAAAATGCATAT+AGG + chr4.3:35634133-35634152 MS.gene056699:intron 30.0%
CTGTTTAGCAGTACATATTT+AGG - chr4.3:35633807-35633826 None:intergenic 30.0%
GAAGTTTAGTAATCAGTACA+AGG + chr4.3:35632309-35632328 MS.gene056699:CDS 30.0%
GTTTGCACATATATGTAATG+TGG + chr4.3:35632976-35632995 MS.gene056699:intron 30.0%
TAACAATCCTAAACCGAAAA+AGG - chr4.3:35633135-35633154 None:intergenic 30.0%
TACAAAATATCGTGACATAG+CGG + chr4.3:35632082-35632101 MS.gene056699:intron 30.0%
TAGTGAACTAAAACACTAGT+AGG - chr4.3:35634104-35634123 None:intergenic 30.0%
TGATGAAAAGATTGACATGT+TGG + chr4.3:35634202-35634221 MS.gene056699:intron 30.0%
TTCGACATTAATACCTTCTT+TGG - chr4.3:35633925-35633944 None:intergenic 30.0%
TTTCATCATAACATGGCAAA+TGG - chr4.3:35634190-35634209 None:intergenic 30.0%
TTTCCACAAGAAACAAAACA+TGG - chr4.3:35633241-35633260 None:intergenic 30.0%
! AAACCTTTTCCAACTAAATG+GGG - chr4.3:35632579-35632598 None:intergenic 30.0%
! AAGAAGTGCAATTTGAAGAT+AGG + chr4.3:35632359-35632378 MS.gene056699:CDS 30.0%
! AGGTTTTTCATGAATGTATC+TGG - chr4.3:35633787-35633806 None:intergenic 30.0%
! ATCTGATTGTGAGCATATTT+TGG + chr4.3:35634077-35634096 MS.gene056699:intron 30.0%
! CAAACCTTTTCCAACTAAAT+GGG - chr4.3:35632580-35632599 None:intergenic 30.0%
! GGTTTGGTAATTTGTAAATC+TGG - chr4.3:35632484-35632503 None:intergenic 30.0%
! GTATCCTTCGATTTTTGTAT+AGG + chr4.3:35631950-35631969 MS.gene056699:intron 30.0%
!! AGTGTTTTTGATGATTTGCA+GGG + chr4.3:35631902-35631921 MS.gene056699:intron 30.0%
!! TAGTGTTTTTGATGATTTGC+AGG + chr4.3:35631901-35631920 MS.gene056699:intron 30.0%
!! TTGATTTGCAAGCTCAAAAT+TGG + chr4.3:35631382-35631401 MS.gene056699:intron 30.0%
!! TTTTTCGGTTTAGGATTGTT+AGG + chr4.3:35633134-35633153 MS.gene056699:intron 30.0%
!!! ATTTTTTGGACAGTACACTT+TGG + chr4.3:35633164-35633183 MS.gene056699:intron 30.0%
!!! GATTTTGAGATGCTTGAAAA+TGG + chr4.3:35632429-35632448 MS.gene056699:intron 30.0%
!!! TGTTAGGCTGCTTAATTTTT+TGG + chr4.3:35633150-35633169 MS.gene056699:intron 30.0%
AACTTTGTGATCACTTCATC+AGG + chr4.3:35633617-35633636 MS.gene056699:intron 35.0%
AATCTGGCCTATCATTTACA+AGG - chr4.3:35632468-35632487 None:intergenic 35.0%
ATATGTGCAAACTAACGGTT+TGG - chr4.3:35632968-35632987 None:intergenic 35.0%
ATGTTCAACCTTCAGTTAAG+AGG - chr4.3:35632691-35632710 None:intergenic 35.0%
CATTTGACAACCTTAACAAC+TGG + chr4.3:35633485-35633504 MS.gene056699:CDS 35.0%
CCATTTAGTTGGAAAAGGTT+TGG + chr4.3:35632578-35632597 MS.gene056699:intron 35.0%
CTCTTGAAAGTCATCATTCT+CGG + chr4.3:35631221-35631240 MS.gene056699:CDS 35.0%
TCTCGAACTCTTCAATTCTA+GGG + chr4.3:35631260-35631279 MS.gene056699:intron 35.0%
TGAAGGTTGAACATGTTTGT+TGG + chr4.3:35632697-35632716 MS.gene056699:intron 35.0%
TGGCAGATGTCTCAAAATAT+GGG - chr4.3:35633905-35633924 None:intergenic 35.0%
TTGGCAGATGTCTCAAAATA+TGG - chr4.3:35633906-35633925 None:intergenic 35.0%
TTTCCAACATCAATTGTGTC+TGG - chr4.3:35634422-35634441 None:intergenic 35.0%
! CCAAACCTTTTCCAACTAAA+TGG - chr4.3:35632581-35632600 None:intergenic 35.0%
!! TTTTTGATGATTTGCAGGGT+GGG + chr4.3:35631906-35631925 MS.gene056699:intron 35.0%
!!! CATCCATGTTTTGTTTCTTG+TGG + chr4.3:35633235-35633254 MS.gene056699:intron 35.0%
AAACACGCCTAGTAGTTCAT+TGG + chr4.3:35632749-35632768 MS.gene056699:intron 40.0%
AACAAGATCGACATTGATGG+TGG + chr4.3:35633684-35633703 MS.gene056699:CDS 40.0%
AACAAGCACGAATTTCCACA+TGG - chr4.3:35634388-35634407 None:intergenic 40.0%
AATCAGTACAAGGCAACCAT+TGG + chr4.3:35632319-35632338 MS.gene056699:CDS 40.0%
ACACATAAGTTCTTGTGCAC+AGG + chr4.3:35633833-35633852 MS.gene056699:intron 40.0%
ACTAAATGGGGTTGGATACA+TGG - chr4.3:35632567-35632586 None:intergenic 40.0%
AGCATTCCAAACCATAGCAA+AGG + chr4.3:35633947-35633966 MS.gene056699:CDS 40.0%
AGGTTTCAGAAAAGAAGGCT+CGG + chr4.3:35633853-35633872 MS.gene056699:intron 40.0%
CAACCCCATTTAGTTGGAAA+AGG + chr4.3:35632573-35632592 MS.gene056699:intron 40.0%
CAGAGTGCAATGGAAAAACT+TGG - chr4.3:35633107-35633126 None:intergenic 40.0%
CATGTTAGATAGAAAAGGGG+AGG - chr4.3:35633733-35633752 None:intergenic 40.0%
CTCTCGAACTCTTCAATTCT+AGG + chr4.3:35631259-35631278 MS.gene056699:intron 40.0%
GCGTGTTTAATTGACACAAC+AGG - chr4.3:35632737-35632756 None:intergenic 40.0%
GGAAACAAGATCGACATTGA+TGG + chr4.3:35633681-35633700 MS.gene056699:CDS 40.0%
TAGGTGAACCTCTTAACTGA+AGG + chr4.3:35632680-35632699 MS.gene056699:intron 40.0%
TCACCTTACAGGTTTGTGAA+TGG + chr4.3:35632386-35632405 MS.gene056699:intron 40.0%
TCTCGAGTAGCTTAATGCAT+AGG + chr4.3:35631716-35631735 MS.gene056699:intron 40.0%
TGACAACCTTAACAACTGGA+GGG + chr4.3:35633489-35633508 MS.gene056699:CDS 40.0%
TGCACAGGTTTCAGAAAAGA+AGG + chr4.3:35633848-35633867 MS.gene056699:intron 40.0%
TGTATCCAACCCCATTTAGT+TGG + chr4.3:35632567-35632586 MS.gene056699:intron 40.0%
TTCACTATATCCACGTCTCT+TGG + chr4.3:35634117-35634136 MS.gene056699:intron 40.0%
TTGACAACCTTAACAACTGG+AGG + chr4.3:35633488-35633507 MS.gene056699:CDS 40.0%
TTTGGACAGTACACTTTGGT+GGG + chr4.3:35633168-35633187 MS.gene056699:intron 40.0%
! ACAAGATCGACATTGATGGT+GGG + chr4.3:35633685-35633704 MS.gene056699:CDS 40.0%
! AGATAGGCTTTTCACCTTAC+AGG + chr4.3:35632375-35632394 MS.gene056699:CDS 40.0%
! CTAATACTGAAAGAGCGTGA+CGG - chr4.3:35633214-35633233 None:intergenic 40.0%
! CTTTTCCAACTAAATGGGGT+TGG - chr4.3:35632575-35632594 None:intergenic 40.0%
! GACCAAGCCTTGTAAATGAT+AGG + chr4.3:35632458-35632477 MS.gene056699:intron 40.0%
! GCCATAACACTTTTGCATAG+CGG + chr4.3:35632115-35632134 MS.gene056699:intron 40.0%
! TAGGAGTTGCTTTCTATCGT+GGG + chr4.3:35633419-35633438 MS.gene056699:CDS 40.0%
! TTGAAAACGGGCTTGTGTAT+GGG + chr4.3:35632839-35632858 MS.gene056699:intron 40.0%
! TTTGAAAACGGGCTTGTGTA+TGG + chr4.3:35632838-35632857 MS.gene056699:intron 40.0%
! TTTGAGACATCTGCCAAAGA+AGG + chr4.3:35633909-35633928 MS.gene056699:CDS 40.0%
! TTTGGGATTTGTTCTCCATG+TGG + chr4.3:35634370-35634389 MS.gene056699:intron 40.0%
! TTTTGGACAGTACACTTTGG+TGG + chr4.3:35633167-35633186 MS.gene056699:intron 40.0%
!! CAATACACTTTAGGATGCAG+GGG - chr4.3:35632813-35632832 None:intergenic 40.0%
!! CGAAGGATACTGATTCATCA+AGG - chr4.3:35631940-35631959 None:intergenic 40.0%
!! CTTTCAAGAGCGTTCTTCTA+CGG - chr4.3:35631211-35631230 None:intergenic 40.0%
!! GCAATACACTTTAGGATGCA+GGG - chr4.3:35632814-35632833 None:intergenic 40.0%
!! GTTTTTGATGATTTGCAGGG+TGG + chr4.3:35631905-35631924 MS.gene056699:intron 40.0%
!! TCCGCTATGCAAAAGTGTTA+TGG - chr4.3:35632119-35632138 None:intergenic 40.0%
!! TGCAATACACTTTAGGATGC+AGG - chr4.3:35632815-35632834 None:intergenic 40.0%
!! TTTCAAGAGCGTTCTTCTAC+GGG - chr4.3:35631210-35631229 None:intergenic 40.0%
!! TTTTGATGATTTGCAGGGTG+GGG + chr4.3:35631907-35631926 MS.gene056699:intron 40.0%
!!! TGAAGAGCCTTTTTCGGTTT+AGG + chr4.3:35633125-35633144 MS.gene056699:intron 40.0%
!!! TGCATTTTTTCCAAGAGACG+TGG - chr4.3:35634130-35634149 None:intergenic 40.0%
AAAGGATGCCCTGAAAAGTG+GGG + chr4.3:35633965-35633984 MS.gene056699:CDS 45.0%
AAAGGCTCTTCAGAGTGCAA+TGG - chr4.3:35633117-35633136 None:intergenic 45.0%
ACGCAATAGTGCTATAGCTC+CGG - chr4.3:35632016-35632035 None:intergenic 45.0%
AGAAAGCAACTCCTAGGCTT+TGG - chr4.3:35633414-35633433 None:intergenic 45.0%
ATATCGTGACATAGCGGCTA+TGG + chr4.3:35632088-35632107 MS.gene056699:intron 45.0%
ATCCGACAGTGACACATGTT+GGG + chr4.3:35631650-35631669 MS.gene056699:intron 45.0%
ATTCCTCCCTCCAGTTGTTA+AGG - chr4.3:35633498-35633517 None:intergenic 45.0%
CAAAGGATGCCCTGAAAAGT+GGG + chr4.3:35633964-35633983 MS.gene056699:CDS 45.0%
CAACATCAATTGTGTCTGGC+AGG - chr4.3:35634418-35634437 None:intergenic 45.0%
CACGATAGAAAGCAACTCCT+AGG - chr4.3:35633420-35633439 None:intergenic 45.0%
CTATAGCACTATTGCGTAGC+GGG + chr4.3:35632019-35632038 MS.gene056699:intron 45.0%
CTGCCAGACACAATTGATGT+TGG + chr4.3:35634416-35634435 MS.gene056699:CDS 45.0%
GCACCATTCACAAACCTGTA+AGG - chr4.3:35632392-35632411 None:intergenic 45.0%
GCTATAGCACTATTGCGTAG+CGG + chr4.3:35632018-35632037 MS.gene056699:intron 45.0%
GGAAAATTCTCTGGATCGGA+AGG - chr4.3:35633648-35633667 None:intergenic 45.0%
GGCCTATCATTTACAAGGCT+TGG - chr4.3:35632463-35632482 None:intergenic 45.0%
GGTTAAGAAGTCAGCTCCAA+TGG - chr4.3:35632338-35632357 None:intergenic 45.0%
GGTTTCAGAAAAGAAGGCTC+GGG + chr4.3:35633854-35633873 MS.gene056699:intron 45.0%
TATCCGACAGTGACACATGT+TGG + chr4.3:35631649-35631668 MS.gene056699:intron 45.0%
TTGGAAACAGCAATCAGCCA+AGG + chr4.3:35634435-35634454 MS.gene056699:CDS 45.0%
TTGGACAGTACACTTTGGTG+GGG + chr4.3:35633169-35633188 MS.gene056699:intron 45.0%
! AGGAGTTGCTTTCTATCGTG+GGG + chr4.3:35633420-35633439 MS.gene056699:CDS 45.0%
! CTAGGAGTTGCTTTCTATCG+TGG + chr4.3:35633418-35633437 MS.gene056699:CDS 45.0%
! TTGCAGATTTGGGATACAGC+TGG + chr4.3:35633376-35633395 MS.gene056699:intron 45.0%
! TTTCAGGGCATCCTTTGCTA+TGG - chr4.3:35633961-35633980 None:intergenic 45.0%
!! GCACTCTGAAGAGCCTTTTT+CGG + chr4.3:35633119-35633138 MS.gene056699:intron 45.0%
!! TTCCTCTTCCCCACTTTTCA+GGG - chr4.3:35633976-35633995 None:intergenic 45.0%
AGCAATCAGCCAAGGTCATC+AGG + chr4.3:35634443-35634462 MS.gene056699:CDS 50.0%
CAACCTTAACAACTGGAGGG+AGG + chr4.3:35633492-35633511 MS.gene056699:CDS 50.0%
CACTCACATCCTGATGACCT+TGG - chr4.3:35634455-35634474 None:intergenic 50.0%
CAGGAGAGATTCCAAAGCCT+AGG + chr4.3:35633400-35633419 MS.gene056699:CDS 50.0%
GCAAAGGATGCCCTGAAAAG+TGG + chr4.3:35633963-35633982 MS.gene056699:CDS 50.0%
GTCATCATTCTCGGTGACAG+CGG + chr4.3:35631230-35631249 MS.gene056699:CDS 50.0%
TCATCATTCTCGGTGACAGC+GGG + chr4.3:35631231-35631250 MS.gene056699:CDS 50.0%
! ACGGGCTTGTGTATGGGTTT+TGG + chr4.3:35632845-35632864 MS.gene056699:intron 50.0%
! CGGGCTTGTGTATGGGTTTT+GGG + chr4.3:35632846-35632865 MS.gene056699:intron 50.0%
! GGGCATCCTTTGCTATGGTT+TGG - chr4.3:35633956-35633975 None:intergenic 50.0%
! TGCCCAACATGTGTCACTGT+CGG - chr4.3:35631655-35631674 None:intergenic 50.0%
!! AAGAGCGTTCTTCTACGGGA+AGG - chr4.3:35631206-35631225 None:intergenic 50.0%
!! CTAGGCTTTGGAATCTCTCC+TGG - chr4.3:35633402-35633421 None:intergenic 50.0%
!! CTTCCTCTTCCCCACTTTTC+AGG - chr4.3:35633977-35633996 None:intergenic 50.0%
!! TGATGGTGGGAACAGTAGAG+TGG + chr4.3:35633698-35633717 MS.gene056699:CDS 50.0%
ACACGCGTCTGTCAGACATG+CGG + chr4.3:35631619-35631638 MS.gene056699:intron 55.0%
CAGAAAAGAAGGCTCGGGCA+TGG + chr4.3:35633859-35633878 MS.gene056699:CDS 55.0%
CAGTGACACATGTTGGGCAC+TGG + chr4.3:35631656-35631675 MS.gene056699:intron 55.0%
TCGTGACATAGCGGCTATGG+CGG + chr4.3:35632091-35632110 MS.gene056699:intron 55.0%
TGCCCTGAAAAGTGGGGAAG+AGG + chr4.3:35633971-35633990 MS.gene056699:CDS 55.0%
! GATTTGGGATACAGCTGGCC+AGG + chr4.3:35633381-35633400 MS.gene056699:intron 55.0%
CACGCGTCTGTCAGACATGC+GGG + chr4.3:35631620-35631639 MS.gene056699:intron 60.0%
CGGGCATGGTGTGCAGCAAA+AGG + chr4.3:35633873-35633892 MS.gene056699:CDS 60.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 35631200 35634478 35631200 ID=MS.gene056699
chr4.3 mRNA 35631200 35634478 35631200 ID=MS.gene056699.t1;Parent=MS.gene056699
chr4.3 exon 35631200 35631252 35631200 ID=MS.gene056699.t1.exon1;Parent=MS.gene056699.t1
chr4.3 CDS 35631200 35631252 35631200 ID=cds.MS.gene056699.t1;Parent=MS.gene056699.t1
chr4.3 exon 35631923 35631949 35631923 ID=MS.gene056699.t1.exon2;Parent=MS.gene056699.t1
chr4.3 CDS 35631923 35631949 35631923 ID=cds.MS.gene056699.t1;Parent=MS.gene056699.t1
chr4.3 exon 35632297 35632396 35632297 ID=MS.gene056699.t1.exon3;Parent=MS.gene056699.t1
chr4.3 CDS 35632297 35632396 35632297 ID=cds.MS.gene056699.t1;Parent=MS.gene056699.t1
chr4.3 exon 35633382 35633528 35633382 ID=MS.gene056699.t1.exon4;Parent=MS.gene056699.t1
chr4.3 CDS 35633382 35633528 35633382 ID=cds.MS.gene056699.t1;Parent=MS.gene056699.t1
chr4.3 exon 35633639 35633719 35633639 ID=MS.gene056699.t1.exon5;Parent=MS.gene056699.t1
chr4.3 CDS 35633639 35633719 35633639 ID=cds.MS.gene056699.t1;Parent=MS.gene056699.t1
chr4.3 exon 35633855 35634000 35633855 ID=MS.gene056699.t1.exon6;Parent=MS.gene056699.t1
chr4.3 CDS 35633855 35634000 35633855 ID=cds.MS.gene056699.t1;Parent=MS.gene056699.t1
chr4.3 exon 35634412 35634478 35634412 ID=MS.gene056699.t1.exon7;Parent=MS.gene056699.t1
chr4.3 CDS 35634412 35634478 35634412 ID=cds.MS.gene056699.t1;Parent=MS.gene056699.t1
Gene Sequence

>MS.gene056699

ATGCCTTCCCGTAGAAGAACGCTCTTGAAAGTCATCATTCTCGGTGACAGCGGGTTCGTCTCTCGAACTCTTCAATTCTAGGGTTTTCCGATAATCATAATTATCATATTCTACAGATCTTATACAATTTTGTTTCCTTCTGCTTATTTTTATTCTTTGATATCTTTGTTTGAACTCAATTATTGATTTGCAAGCTCAAAATTGGATCTTAGTTTGTCATTTTTCTTATTCTTGTTTGGATCACGAGAATTATACTATAAGTAACTTAATTTATAGGTGAATTTCTTATTCTTGTTTAGATCACAAGAATCATATCTAGACATGGCACTAACACTTGAACACCGTTGATAATTTGTGAAAATGACATAATGCAACGTAATTACACGCGTCATGTATGTAATTACAAGCGTTATGTACTGACACGCGTCTGTCAGACATGCGGGACATTGTATCCGACAGTGACACATGTTGGGCACTGGACACACGTCTGTTCAGAAGTGTCAGTGCTACAGAGTATCTCGAGTAGCTTAATGCATAGGTGAATTTTTCTTGTAATTGTTTGGATCACAAGAATCATATCTAAAGTAACTTAATTTATAGAATTGTTTGGATACTTTCAACCATGTTAATGTTAAGTTGATTTATGAGTTGAATTATTTGTTGTATCTACTAGTTTTTTTTTTTTCTTCTTCTTAACATGGTAGTGTTTTTGATGATTTGCAGGGTGGGGAAGACGTCCTTGATGAATCAGTATCCTTCGATTTTTGTATAGGAAGTCAGTATTACGTACAGTGTTGTTAATTAGCGAATATACCGGAGCTATAGCACTATTGCGTAGCGGGATTTAAACAAATCGCTATTGTTCCACAATACACTATTTAGTACAAAATATCGTGACATAGCGGCTATGGCGGTGCCATAACACTTTTGCATAGCGGAATTTGAACAAATCGCTATTTTCTGCGATCTGTAATTGACAACACCGATTCTATATTTGTTTTCAATTTTCACTGCAATTTTCTAAGGTTTTAGTATTGTATAGGTTTATGCTTTAAAAATATGCGGTCTTTGTGTTTCTCTTAACCTATATATTTTAGATATGTGAATAAGAAGTTTAGTAATCAGTACAAGGCAACCATTGGAGCTGACTTCTTAACCAAAGAAGTGCAATTTGAAGATAGGCTTTTCACCTTACAGGTTTGTGAATGGTGCTTCCTTGTGCTTAATTTGATTTTGAGATGCTTGAAAATGGCTTCATGACCAAGCCTTGTAAATGATAGGCCAGATTTACAAATTACCAAACCCTTTTTGTTTTGAATGTTTATCTTTCTGATATTACTAGATGGTTTATGGCGTGATTTGATCCATGTATCCAACCCCATTTAGTTGGAAAAGGTTTGGCTGTTGTTGCTGTTTTATTGCATAGATAGATGTTTTAGATTGTGCATCATGTTACATACTGATTTTATTGAAGAATTCGTAGGTGAACCTCTTAACTGAAGGTTGAACATGTTTGTTGGTACTGTGTTATCAGCCTGTTGTGTCAATTAAACACGCCTAGTAGTTCATTGGATTAAGTTTGTTACTTATTGCTCATTTTGATGCTAGAACCCCTGCATCCTAAAGTGTATTGCATTATTTGAAAACGGGCTTGTGTATGGGTTTTGGGAAGTGAATGACGATGTTTCCTGTCGTTTTTGAGAAATTGTTTACTATATTTTGATGATTGTCTTGGCACATGACTTTGAAATGTAACACACTATAACCAAACCGTTAGTTTGCACATATATGTAATGTGGCTTTTGTTAGTCTTAACATTGAGCATCTCTGATATATAGATTGAATCTAATGGGGAAGAGAACTAAATCTATCTAAATGATAACTATATTTCTTATGATTAATAGCCAAGTTTTTCCATTGCACTCTGAAGAGCCTTTTTCGGTTTAGGATTGTTAGGCTGCTTAATTTTTTGGACAGTACACTTTGGTGGGGTATAAATTTTAGCATATTACCGTCACGCTCTTTCAGTATTAGACATCCATGTTTTGTTTCTTGTGGAAATCATATTTGTGCTTGTTCTACATCTCGTAATTATCTTCCTGTTTTTATTGATAATTTTAAGTTAAAATGGTAAAAGTTTTCTTTGCTTTTGTTTTAATTTTTAGCATTCTAAATCTTGCAGATTTGGGATACAGCTGGCCAGGAGAGATTCCAAAGCCTAGGAGTTGCTTTCTATCGTGGGGCTGATTGCTGTGTTCTTGTATATGATGTTAATTCAATGAAATCATTTGACAACCTTAACAACTGGAGGGAGGAATTTCTGATTCAAGTATGCTTATGCTTCTCTCTCTCTCTCTTCATAATTTTTCAATTTTATTTATCATCTCAAGCAATGTAGAAGAATTTCATAACTTCTGAACTTTGTGATCACTTCATCAGGCAAATCCTTCCGATCCAGAGAATTTTCCTTTTGTTGTTATAGGAAACAAGATCGACATTGATGGTGGGAACAGTAGAGTGGTATGTTTTTCCTCCCCTTTTCTATCTAACATGTTTCTTTTATTTCTTCAAAAGCTTGCATGCACCAGATACATTCATGAAAAACCTAAATATGTACTGCTAAACAGATTAACACACATAAGTTCTTGTGCACAGGTTTCAGAAAAGAAGGCTCGGGCATGGTGTGCAGCAAAAGGAAATATCCCATATTTTGAGACATCTGCCAAAGAAGGTATTAATGTCGAAGAAGCATTCCAAACCATAGCAAAGGATGCCCTGAAAAGTGGGGAAGAGGAAGAATTGTAAGTTCTTAAGCATGTGTATCTCTTACTTAATATATGTGAACATACTTCATAAAAAATGCATTAAGTTAGGTATATCTGATTGTGAGCATATTTTGGTCCTACTAGTGTTTTAGTTCACTATATCCACGTCTCTTGGAAAAAATGCATATAGGATTGATGTTTAATGATGGAGACATACATGAACCATTTGCCATGTTATGATGAAAAGATTGACATGTTGGTTTGTCTTATATAATAGTGGCGTGCAAAGAAATTTCAGTGTGTATTTCAGTTGCAGTATTATTTGATAGTTACCCATAGATTATGAATCTTTCTGTTATTTGATAATGGGATAATTTAATTACTCCAATGTTATTGATGTTATGTTTTGGGATTTGTTCTCCATGTGGAAATTCGTGCTTGTTGAAGATACCTGCCAGACACAATTGATGTTGGAAACAGCAATCAGCCAAGGTCATCAGGATGTGAGTGCTGA

Protein sequence

>MS.gene056699.t1

MPSRRRTLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQANPSDPENFPFVVIGNKIDIDGGNSRVVSEKKARAWCAAKGNIPYFETSAKEGINVEEAFQTIAKDALKSGEEEELYLPDTIDVGNSNQPRSSGCEC