Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062997.t1 | XP_003607179.1 | 86.4 | 376 | 19 | 1 | 1 | 344 | 1 | 376 | 9.80E-185 | 656 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062997.t1 | A0A1C9CX66 | 39.6 | 369 | 184 | 8 | 6 | 340 | 27 | 390 | 1.0e-65 | 251.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062997.t1 | G7JMD3 | 86.4 | 376 | 19 | 1 | 1 | 344 | 1 | 376 | 7.0e-185 | 656.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050381 | MS.gene062997 | 0.804201 | 2.42E-49 | -1.69E-46 |
| MS.gene051127 | MS.gene062997 | 0.818776 | 1.64E-52 | -1.69E-46 |
| MS.gene056920 | MS.gene062997 | 0.810967 | 8.86E-51 | -1.69E-46 |
| MS.gene057770 | MS.gene062997 | 0.914688 | 1.43E-84 | -1.69E-46 |
| MS.gene06077 | MS.gene062997 | -0.821944 | 3.08E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062997.t1 | MTR_4g073090 | 86.702 | 376 | 18 | 1 | 1 | 344 | 1 | 376 | 0.0 | 669 |
| MS.gene062997.t1 | MTR_4g121570 | 75.266 | 376 | 61 | 1 | 1 | 344 | 1 | 376 | 0.0 | 592 |
| MS.gene062997.t1 | MTR_4g121590 | 73.138 | 376 | 69 | 1 | 1 | 344 | 1 | 376 | 0.0 | 573 |
| MS.gene062997.t1 | MTR_3g102730 | 41.287 | 373 | 172 | 10 | 6 | 340 | 27 | 390 | 9.46e-87 | 266 |
| MS.gene062997.t1 | MTR_3g013890 | 40.751 | 373 | 174 | 10 | 6 | 340 | 27 | 390 | 3.11e-85 | 263 |
| MS.gene062997.t1 | MTR_3g102760 | 39.623 | 371 | 183 | 8 | 5 | 340 | 26 | 390 | 7.06e-84 | 259 |
| MS.gene062997.t1 | MTR_1g018610 | 39.247 | 372 | 187 | 7 | 2 | 340 | 58 | 423 | 1.64e-82 | 257 |
| MS.gene062997.t1 | MTR_3g102770 | 39.566 | 369 | 183 | 8 | 6 | 340 | 27 | 389 | 4.39e-82 | 254 |
| MS.gene062997.t1 | MTR_1g018590 | 38.482 | 369 | 187 | 6 | 6 | 340 | 32 | 394 | 1.28e-81 | 253 |
| MS.gene062997.t1 | MTR_1g018580 | 39.769 | 347 | 189 | 6 | 6 | 340 | 26 | 364 | 1.69e-79 | 247 |
| MS.gene062997.t1 | MTR_3g463660 | 33.069 | 378 | 203 | 11 | 4 | 340 | 7 | 375 | 5.08e-56 | 187 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062997.t1 | AT4G24220 | 38.919 | 370 | 183 | 9 | 6 | 340 | 27 | 388 | 4.78e-80 | 249 |
| MS.gene062997.t1 | AT4G24220 | 38.919 | 370 | 183 | 9 | 6 | 340 | 26 | 387 | 6.35e-80 | 249 |
| MS.gene062997.t1 | AT5G58750 | 29.427 | 384 | 215 | 13 | 3 | 341 | 6 | 378 | 5.30e-43 | 153 |
| MS.gene062997.t1 | AT5G58750 | 29.427 | 384 | 215 | 13 | 3 | 341 | 14 | 386 | 6.07e-43 | 153 |
Find 105 sgRNAs with CRISPR-Local
Find 119 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAAGCACGTAATAGAAATT+TGG | 0.168674 | 4.2:-35283813 | None:intergenic |
| CGTTTAAGAGTATCAGATTC+TGG | 0.234355 | 4.2:+35284393 | MS.gene062997:CDS |
| GACTTGATTGTCGAGGAATA+TGG | 0.263491 | 4.2:+35284242 | MS.gene062997:CDS |
| TTTCCCTCTTCCATCCTTGA+TGG | 0.277406 | 4.2:+35283489 | MS.gene062997:CDS |
| TTCCGGTTTGGAGTGTTATA+TGG | 0.277420 | 4.2:-35283692 | None:intergenic |
| GCTGCCATATGTCGCCATTT+AGG | 0.280720 | 4.2:+35283951 | MS.gene062997:CDS |
| ATGAACAAGAGTAAGGATTA+TGG | 0.289410 | 4.2:+35284350 | MS.gene062997:CDS |
| CATCGATCCTCTATCATAAT+AGG | 0.292341 | 4.2:+35283879 | MS.gene062997:CDS |
| GGAAGCAATTTCCTGCAATT+TGG | 0.303114 | 4.2:-35284276 | None:intergenic |
| AACGAAAAGGTAATCCTAAA+TGG | 0.324790 | 4.2:-35283965 | None:intergenic |
| TGCGTGATAAGGGTGAGATT+TGG | 0.330513 | 4.2:+35284219 | MS.gene062997:CDS |
| ATCAGGCTGCTTCAAGGCTT+TGG | 0.337780 | 4.2:-35283409 | None:intergenic |
| GCACTGGTGGTTGGAGTAAC+AGG | 0.353312 | 4.2:+35283366 | MS.gene062997:CDS |
| CAAGCACGTAATAGAAATTT+GGG | 0.353974 | 4.2:-35283812 | None:intergenic |
| GGAGGCCCATGGAAAGTTTA+CGG | 0.363918 | 4.2:+35283438 | MS.gene062997:CDS |
| GCGTGATAAGGGTGAGATTT+GGG | 0.371349 | 4.2:+35284220 | MS.gene062997:CDS |
| CAAGGAAGAGTTTGATTTGG+TGG | 0.392348 | 4.2:+35284190 | MS.gene062997:CDS |
| ACCCATGTAATGTTTGGTTC+CGG | 0.408112 | 4.2:-35283709 | None:intergenic |
| AAGCAGCCTGATTGTCTTGG+AGG | 0.408544 | 4.2:+35283420 | MS.gene062997:CDS |
| TCCCAAGTGTACCTGTTTCC+TGG | 0.408987 | 4.2:-35283990 | None:intergenic |
| TGTAATGTTTGGTTCCGGTT+TGG | 0.409989 | 4.2:-35283704 | None:intergenic |
| TGTTTCGTGGCATATAAGTT+TGG | 0.415707 | 4.2:-35283757 | None:intergenic |
| ACTTGATTGTCGAGGAATAT+GGG | 0.422566 | 4.2:+35284243 | MS.gene062997:CDS |
| CTCGCCGCTCCGCCGACGGT+TGG | 0.426749 | 4.2:+35283466 | MS.gene062997:CDS |
| CGTTACATCCTATGCACCTT+CGG | 0.429287 | 4.2:+35283842 | MS.gene062997:CDS |
| TCCGGTTTGGAGTGTTATAT+GGG | 0.429734 | 4.2:-35283691 | None:intergenic |
| TGAAACTCAAACCGCAGAAC+TGG | 0.435621 | 4.2:-35284314 | None:intergenic |
| GACCGAACCGGATCATGAAC+TGG | 0.436608 | 4.2:-35283732 | None:intergenic |
| TGAACAAGAGTAAGGATTAT+GGG | 0.445952 | 4.2:+35284351 | MS.gene062997:CDS |
| AACCGGAACCAAACATTACA+TGG | 0.447203 | 4.2:+35283707 | MS.gene062997:CDS |
| TGACAAGGAAGAGTTTGATT+TGG | 0.447305 | 4.2:+35284187 | MS.gene062997:CDS |
| CATGGGCCTCCAAGACAATC+AGG | 0.450062 | 4.2:-35283426 | None:intergenic |
| TTGAAGCAGCCTGATTGTCT+TGG | 0.454331 | 4.2:+35283417 | MS.gene062997:CDS |
| AAGACAATCAGGCTGCTTCA+AGG | 0.459742 | 4.2:-35283415 | None:intergenic |
| AACTGGCACCGTTGCTTCAA+AGG | 0.459967 | 4.2:-35284297 | None:intergenic |
| GCAGCTCGCCGCTCCGCCGA+CGG | 0.460373 | 4.2:+35283462 | MS.gene062997:CDS |
| GGTGGAGTTAATGCGTGATA+AGG | 0.462624 | 4.2:+35284208 | MS.gene062997:CDS |
| GCTTCATAAGACCAAATTGC+AGG | 0.471225 | 4.2:+35284265 | MS.gene062997:CDS |
| ATAAGTTTGGTGGACCGAAC+CGG | 0.472714 | 4.2:-35283744 | None:intergenic |
| CGTTTGTGCAATTAAACGCT+TGG | 0.475175 | 4.2:-35284091 | None:intergenic |
| GTTTAAGAGTATCAGATTCT+GGG | 0.476243 | 4.2:+35284394 | MS.gene062997:CDS |
| TTCGTGGCATATAAGTTTGG+TGG | 0.479076 | 4.2:-35283754 | None:intergenic |
| AACTGGACCCATGTAATGTT+TGG | 0.479645 | 4.2:-35283715 | None:intergenic |
| GTTGGAGTAACAGGAATGGC+TGG | 0.481819 | 4.2:+35283375 | MS.gene062997:CDS |
| CAAGCGTTTAATTGCACAAA+CGG | 0.481885 | 4.2:+35284092 | MS.gene062997:CDS |
| GAGTGTTATATGGGTGAGAG+AGG | 0.483711 | 4.2:-35283682 | None:intergenic |
| TAATCCTAAATGGCGACATA+TGG | 0.484403 | 4.2:-35283955 | None:intergenic |
| ATATGGGTGAGAGAGGAAGA+TGG | 0.485484 | 4.2:-35283675 | None:intergenic |
| GCTGCTTCAAGGCTTTGGCT+AGG | 0.489750 | 4.2:-35283404 | None:intergenic |
| ACGTAATAGAAATTTGGGTA+AGG | 0.497259 | 4.2:-35283807 | None:intergenic |
| GTGGAGTTAATGCGTGATAA+GGG | 0.499998 | 4.2:+35284209 | MS.gene062997:CDS |
| CGTGGCATATTCTCATGAAA+AGG | 0.500622 | 4.2:-35283780 | None:intergenic |
| GCTGCACCGTAAACTTTCCA+TGG | 0.501136 | 4.2:-35283444 | None:intergenic |
| CATGGGTCCAGTTCATGATC+CGG | 0.501165 | 4.2:+35283725 | MS.gene062997:CDS |
| AGGAAGATGGAGAAGATTTG+AGG | 0.504270 | 4.2:-35283662 | None:intergenic |
| TGACATACCTATTATGATAG+AGG | 0.505635 | 4.2:-35283886 | None:intergenic |
| AGCATGTTGTGTGCACTCCT+TGG | 0.507279 | 4.2:-35283909 | None:intergenic |
| ACCCATATAACACTCCAAAC+CGG | 0.508475 | 4.2:+35283690 | MS.gene062997:CDS |
| GTCCAGTTCATGATCCGGTT+CGG | 0.509772 | 4.2:+35283730 | MS.gene062997:CDS |
| ATCCAGGAAACAGGTACACT+TGG | 0.510852 | 4.2:+35283988 | MS.gene062997:CDS |
| CTGTTTCCTGGATAACGAAA+AGG | 0.512273 | 4.2:-35283978 | None:intergenic |
| AGCTGAGTTGACAGCGTCAA+AGG | 0.516806 | 4.2:-35283520 | None:intergenic |
| ATCTAGTATGAACAAGAGTA+AGG | 0.523341 | 4.2:+35284343 | MS.gene062997:CDS |
| GCAATTCAATGTTGGTAGAC+GGG | 0.530484 | 4.2:-35284446 | None:intergenic |
| TGCAATTCAATGTTGGTAGA+CGG | 0.532767 | 4.2:-35284447 | None:intergenic |
| TCTCATGAAAAGGTGTTTCG+TGG | 0.533034 | 4.2:-35283770 | None:intergenic |
| GAAACCATCAAGGATGGAAG+AGG | 0.543933 | 4.2:-35283493 | None:intergenic |
| AATTGCTTCCTTTGAAGCAA+CGG | 0.544770 | 4.2:+35284289 | MS.gene062997:CDS |
| AAATTTCTATTACGTGCTTG+AGG | 0.545697 | 4.2:+35283815 | MS.gene062997:CDS |
| CGTAATAGAAATTTGGGTAA+GGG | 0.551405 | 4.2:-35283806 | None:intergenic |
| GGTGATGAAACCATCAAGGA+TGG | 0.551500 | 4.2:-35283499 | None:intergenic |
| TTCTGTGATATGACGGATGT+AGG | 0.555750 | 4.2:+35284017 | MS.gene062997:CDS |
| TGTACGAAATTCCGTAGCAC+TGG | 0.559150 | 4.2:+35283350 | MS.gene062997:CDS |
| TCGACAATGCAATTCAATGT+TGG | 0.560282 | 4.2:-35284454 | None:intergenic |
| TACTCCAACCACCAGTGCTA+CGG | 0.560800 | 4.2:-35283361 | None:intergenic |
| AGATGGAGAAGATTTGAGGA+CGG | 0.565001 | 4.2:-35283658 | None:intergenic |
| GGTGAGAACATTAAGAAGCA+TGG | 0.566963 | 4.2:-35283637 | None:intergenic |
| CTGATTGTCTTGGAGGCCCA+TGG | 0.579424 | 4.2:+35283427 | MS.gene062997:CDS |
| TATGTGGATGTTGCTTAGTG+AGG | 0.596746 | 4.2:+35284136 | MS.gene062997:CDS |
| GTGAGAACATTAAGAAGCAT+GGG | 0.597350 | 4.2:-35283636 | None:intergenic |
| GAAACCAACCGTCGGCGGAG+CGG | 0.597803 | 4.2:-35283470 | None:intergenic |
| GATTCTGGGTGGCTAAGCTG+AGG | 0.597911 | 4.2:+35284408 | MS.gene062997:CDS |
| GTATGTAACCGAAGGTGCAT+AGG | 0.598466 | 4.2:-35283850 | None:intergenic |
| CAAAGGTGATGAAACCATCA+AGG | 0.599116 | 4.2:-35283503 | None:intergenic |
| ACGAAATTCCGTAGCACTGG+TGG | 0.600681 | 4.2:+35283353 | MS.gene062997:CDS |
| GCTTGCAAAGCAACATGTGT+GGG | 0.604170 | 4.2:+35284043 | MS.gene062997:CDS |
| AAGCAACGGTGCCAGTTCTG+CGG | 0.604203 | 4.2:+35284303 | MS.gene062997:CDS |
| AAACCATCAAGGATGGAAGA+GGG | 0.615289 | 4.2:-35283492 | None:intergenic |
| TTGGAGTAACAGGAATGGCT+GGG | 0.618664 | 4.2:+35283376 | MS.gene062997:CDS |
| GGAGCATTTCTGTGATATGA+CGG | 0.620486 | 4.2:+35284010 | MS.gene062997:CDS |
| AATTCCGTAGCACTGGTGGT+TGG | 0.620890 | 4.2:+35283357 | MS.gene062997:CDS |
| GATTTGGGACTTGATTGTCG+AGG | 0.621595 | 4.2:+35284235 | MS.gene062997:CDS |
| AGAGGGAAACCAACCGTCGG+CGG | 0.624214 | 4.2:-35283475 | None:intergenic |
| AAATTTGGGTAAGGGAGTCG+TGG | 0.629424 | 4.2:-35283798 | None:intergenic |
| GTTTGTGGAGTTGAATGACA+AGG | 0.631208 | 4.2:+35284172 | MS.gene062997:CDS |
| CTGCACCGTAAACTTTCCAT+GGG | 0.632624 | 4.2:-35283443 | None:intergenic |
| ATTCTGGGTGGCTAAGCTGA+GGG | 0.633204 | 4.2:+35284409 | MS.gene062997:CDS |
| TGCTTGCAAAGCAACATGTG+TGG | 0.638014 | 4.2:+35284042 | MS.gene062997:CDS |
| TGTATTGAGTATGTAACCGA+AGG | 0.639133 | 4.2:-35283858 | None:intergenic |
| TCCAGGAAACAGGTACACTT+GGG | 0.643371 | 4.2:+35283989 | MS.gene062997:CDS |
| ACCGGAACCAAACATTACAT+GGG | 0.645400 | 4.2:+35283708 | MS.gene062997:CDS |
| TCATAATAGGTATGTCACCA+AGG | 0.670293 | 4.2:+35283892 | MS.gene062997:CDS |
| GGAAGAGGGAAACCAACCGT+CGG | 0.684240 | 4.2:-35283478 | None:intergenic |
| TAAGAGTATCAGATTCTGGG+TGG | 0.693537 | 4.2:+35284397 | MS.gene062997:CDS |
| GGTGGTTGGAGTAACAGGAA+TGG | 0.704306 | 4.2:+35283371 | MS.gene062997:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| AAATTTCTATTACGTGCTTG+AGG | + | chr4.2:35283815-35283834 | MS.gene062997:CDS | 30.0% | |
| AACGAAAAGGTAATCCTAAA+TGG | - | chr4.2:35283968-35283987 | None:intergenic | 30.0% | |
| ACGTAATAGAAATTTGGGTA+AGG | - | chr4.2:35283810-35283829 | None:intergenic | 30.0% | |
| ATCTAGTATGAACAAGAGTA+AGG | + | chr4.2:35284343-35284362 | MS.gene062997:CDS | 30.0% | |
| ATGAACAAGAGTAAGGATTA+TGG | + | chr4.2:35284350-35284369 | MS.gene062997:CDS | 30.0% | |
| CAAGCACGTAATAGAAATTT+GGG | - | chr4.2:35283815-35283834 | None:intergenic | 30.0% | |
| CGTAATAGAAATTTGGGTAA+GGG | - | chr4.2:35283809-35283828 | None:intergenic | 30.0% | |
| TCAAGCACGTAATAGAAATT+TGG | - | chr4.2:35283816-35283835 | None:intergenic | 30.0% | |
| TGAACAAGAGTAAGGATTAT+GGG | + | chr4.2:35284351-35284370 | MS.gene062997:CDS | 30.0% | |
| TGACATACCTATTATGATAG+AGG | - | chr4.2:35283889-35283908 | None:intergenic | 30.0% | |
| ! | GGTTTTTGATGTTAAGTTTG+TGG | + | chr4.2:35284157-35284176 | MS.gene062997:CDS | 30.0% |
| !! | GTTTAAGAGTATCAGATTCT+GGG | + | chr4.2:35284394-35284413 | MS.gene062997:CDS | 30.0% |
| ACTTGATTGTCGAGGAATAT+GGG | + | chr4.2:35284243-35284262 | MS.gene062997:CDS | 35.0% | |
| CAAGCGTTTAATTGCACAAA+CGG | + | chr4.2:35284092-35284111 | MS.gene062997:CDS | 35.0% | |
| CATCGATCCTCTATCATAAT+AGG | + | chr4.2:35283879-35283898 | MS.gene062997:CDS | 35.0% | |
| TAATCCTAAATGGCGACATA+TGG | - | chr4.2:35283958-35283977 | None:intergenic | 35.0% | |
| TCATAATAGGTATGTCACCA+AGG | + | chr4.2:35283892-35283911 | MS.gene062997:CDS | 35.0% | |
| TGACAAGGAAGAGTTTGATT+TGG | + | chr4.2:35284187-35284206 | MS.gene062997:CDS | 35.0% | |
| TGTATTGAGTATGTAACCGA+AGG | - | chr4.2:35283861-35283880 | None:intergenic | 35.0% | |
| TGTTTCGTGGCATATAAGTT+TGG | - | chr4.2:35283760-35283779 | None:intergenic | 35.0% | |
| ! | GTGAGAACATTAAGAAGCAT+GGG | - | chr4.2:35283639-35283658 | None:intergenic | 35.0% |
| !! | AATTGCTTCCTTTGAAGCAA+CGG | + | chr4.2:35284289-35284308 | MS.gene062997:CDS | 35.0% |
| !! | CGTTTAAGAGTATCAGATTC+TGG | + | chr4.2:35284393-35284412 | MS.gene062997:CDS | 35.0% |
| !! | TTTTCACTTGGAAGAGTATG+TGG | + | chr4.2:35284120-35284139 | MS.gene062997:CDS | 35.0% |
| AAACCATCAAGGATGGAAGA+GGG | - | chr4.2:35283495-35283514 | None:intergenic | 40.0% | |
| AACCGGAACCAAACATTACA+TGG | + | chr4.2:35283707-35283726 | MS.gene062997:CDS | 40.0% | |
| AACTGGACCCATGTAATGTT+TGG | - | chr4.2:35283718-35283737 | None:intergenic | 40.0% | |
| ACCCATATAACACTCCAAAC+CGG | + | chr4.2:35283690-35283709 | MS.gene062997:CDS | 40.0% | |
| ACCGGAACCAAACATTACAT+GGG | + | chr4.2:35283708-35283727 | MS.gene062997:CDS | 40.0% | |
| AGATGGAGAAGATTTGAGGA+CGG | - | chr4.2:35283661-35283680 | None:intergenic | 40.0% | |
| AGGAAGATGGAGAAGATTTG+AGG | - | chr4.2:35283665-35283684 | None:intergenic | 40.0% | |
| CAAAGGTGATGAAACCATCA+AGG | - | chr4.2:35283506-35283525 | None:intergenic | 40.0% | |
| CGTGGCATATTCTCATGAAA+AGG | - | chr4.2:35283783-35283802 | None:intergenic | 40.0% | |
| CGTTTGTGCAATTAAACGCT+TGG | - | chr4.2:35284094-35284113 | None:intergenic | 40.0% | |
| CTGTTTCCTGGATAACGAAA+AGG | - | chr4.2:35283981-35284000 | None:intergenic | 40.0% | |
| CTTCTTCATCACCTACAAAC+TGG | - | chr4.2:35283607-35283626 | None:intergenic | 40.0% | |
| GACTTGATTGTCGAGGAATA+TGG | + | chr4.2:35284242-35284261 | MS.gene062997:CDS | 40.0% | |
| GCTTCATAAGACCAAATTGC+AGG | + | chr4.2:35284265-35284284 | MS.gene062997:CDS | 40.0% | |
| GGAAGCAATTTCCTGCAATT+TGG | - | chr4.2:35284279-35284298 | None:intergenic | 40.0% | |
| GGTGAGAACATTAAGAAGCA+TGG | - | chr4.2:35283640-35283659 | None:intergenic | 40.0% | |
| GTGGAGTTAATGCGTGATAA+GGG | + | chr4.2:35284209-35284228 | MS.gene062997:CDS | 40.0% | |
| GTTTGTGGAGTTGAATGACA+AGG | + | chr4.2:35284172-35284191 | MS.gene062997:CDS | 40.0% | |
| TCATCACCTACAAACTGGAA+CGG | - | chr4.2:35283602-35283621 | None:intergenic | 40.0% | |
| TTCGTGGCATATAAGTTTGG+TGG | - | chr4.2:35283757-35283776 | None:intergenic | 40.0% | |
| ! | ACCCATGTAATGTTTGGTTC+CGG | - | chr4.2:35283712-35283731 | None:intergenic | 40.0% |
| ! | CTTTTCGTTATCCAGGAAAC+AGG | + | chr4.2:35283979-35283998 | MS.gene062997:CDS | 40.0% |
| ! | GGAGCATTTCTGTGATATGA+CGG | + | chr4.2:35284010-35284029 | MS.gene062997:CDS | 40.0% |
| ! | GGATTACCTTTTCGTTATCC+AGG | + | chr4.2:35283972-35283991 | MS.gene062997:CDS | 40.0% |
| ! | TATGTGGATGTTGCTTAGTG+AGG | + | chr4.2:35284136-35284155 | MS.gene062997:CDS | 40.0% |
| ! | TGTAATGTTTGGTTCCGGTT+TGG | - | chr4.2:35283707-35283726 | None:intergenic | 40.0% |
| ! | TTGGGATATTGGTAACAGCT+TGG | - | chr4.2:35283556-35283575 | None:intergenic | 40.0% |
| !! | CAAGGAAGAGTTTGATTTGG+TGG | + | chr4.2:35284190-35284209 | MS.gene062997:CDS | 40.0% |
| !! | TAAGAGTATCAGATTCTGGG+TGG | + | chr4.2:35284397-35284416 | MS.gene062997:CDS | 40.0% |
| !! | TCCGGTTTGGAGTGTTATAT+GGG | - | chr4.2:35283694-35283713 | None:intergenic | 40.0% |
| !! | TCTCATGAAAAGGTGTTTCG+TGG | - | chr4.2:35283773-35283792 | None:intergenic | 40.0% |
| !! | TTCCGGTTTGGAGTGTTATA+TGG | - | chr4.2:35283695-35283714 | None:intergenic | 40.0% |
| !! | TTCTGTGATATGACGGATGT+AGG | + | chr4.2:35284017-35284036 | MS.gene062997:CDS | 40.0% |
| AAAAGAGGTGGGTGACTTCT+TGG | - | chr4.2:35283575-35283594 | None:intergenic | 45.0% | |
| AAAGAGGTGGGTGACTTCTT+GGG | - | chr4.2:35283574-35283593 | None:intergenic | 45.0% | |
| AAATTTGGGTAAGGGAGTCG+TGG | - | chr4.2:35283801-35283820 | None:intergenic | 45.0% | |
| AAGACAATCAGGCTGCTTCA+AGG | - | chr4.2:35283418-35283437 | None:intergenic | 45.0% | |
| ATATGGGTGAGAGAGGAAGA+TGG | - | chr4.2:35283678-35283697 | None:intergenic | 45.0% | |
| ATCCAGGAAACAGGTACACT+TGG | + | chr4.2:35283988-35284007 | MS.gene062997:CDS | 45.0% | |
| CGTTACATCCTATGCACCTT+CGG | + | chr4.2:35283842-35283861 | MS.gene062997:CDS | 45.0% | |
| CTGCACCGTAAACTTTCCAT+GGG | - | chr4.2:35283446-35283465 | None:intergenic | 45.0% | |
| GAAACCATCAAGGATGGAAG+AGG | - | chr4.2:35283496-35283515 | None:intergenic | 45.0% | |
| GAGTGTTATATGGGTGAGAG+AGG | - | chr4.2:35283685-35283704 | None:intergenic | 45.0% | |
| GCGTGATAAGGGTGAGATTT+GGG | + | chr4.2:35284220-35284239 | MS.gene062997:CDS | 45.0% | |
| GCTTGCAAAGCAACATGTGT+GGG | + | chr4.2:35284043-35284062 | MS.gene062997:CDS | 45.0% | |
| GGTGATGAAACCATCAAGGA+TGG | - | chr4.2:35283502-35283521 | None:intergenic | 45.0% | |
| GGTGGAGTTAATGCGTGATA+AGG | + | chr4.2:35284208-35284227 | MS.gene062997:CDS | 45.0% | |
| TCCAGGAAACAGGTACACTT+GGG | + | chr4.2:35283989-35284008 | MS.gene062997:CDS | 45.0% | |
| TGAAACTCAAACCGCAGAAC+TGG | - | chr4.2:35284317-35284336 | None:intergenic | 45.0% | |
| TGCGTGATAAGGGTGAGATT+TGG | + | chr4.2:35284219-35284238 | MS.gene062997:CDS | 45.0% | |
| TGCTTGCAAAGCAACATGTG+TGG | + | chr4.2:35284042-35284061 | MS.gene062997:CDS | 45.0% | |
| TGGGTGACTTCTTGGGATAT+TGG | - | chr4.2:35283567-35283586 | None:intergenic | 45.0% | |
| TGTACGAAATTCCGTAGCAC+TGG | + | chr4.2:35283350-35283369 | MS.gene062997:CDS | 45.0% | |
| TTGAAGCAGCCTGATTGTCT+TGG | + | chr4.2:35283417-35283436 | MS.gene062997:CDS | 45.0% | |
| TTGGAGTAACAGGAATGGCT+GGG | + | chr4.2:35283376-35283395 | MS.gene062997:CDS | 45.0% | |
| TTTCCCTCTTCCATCCTTGA+TGG | + | chr4.2:35283489-35283508 | MS.gene062997:CDS | 45.0% | |
| ! | AAGAAGTCACCCACCTCTTT+TGG | + | chr4.2:35283574-35283593 | MS.gene062997:intron | 45.0% |
| ! | AGAAGTCACCCACCTCTTTT+GGG | + | chr4.2:35283575-35283594 | MS.gene062997:intron | 45.0% |
| ! | ATAAGTTTGGTGGACCGAAC+CGG | - | chr4.2:35283747-35283766 | None:intergenic | 45.0% |
| ! | CAAACGGCGATGTTTTCACT+TGG | + | chr4.2:35284108-35284127 | MS.gene062997:CDS | 45.0% |
| ! | GATTTGGGACTTGATTGTCG+AGG | + | chr4.2:35284235-35284254 | MS.gene062997:CDS | 45.0% |
| ! | GTATGTAACCGAAGGTGCAT+AGG | - | chr4.2:35283853-35283872 | None:intergenic | 45.0% |
| AACTGGAACGGACCCAAAAG+AGG | - | chr4.2:35283590-35283609 | None:intergenic | 50.0% | |
| AACTGGCACCGTTGCTTCAA+AGG | - | chr4.2:35284300-35284319 | None:intergenic | 50.0% | |
| AAGCAGCCTGATTGTCTTGG+AGG | + | chr4.2:35283420-35283439 | MS.gene062997:CDS | 50.0% | |
| AGCATGTTGTGTGCACTCCT+TGG | - | chr4.2:35283912-35283931 | None:intergenic | 50.0% | |
| ATCAGGCTGCTTCAAGGCTT+TGG | - | chr4.2:35283412-35283431 | None:intergenic | 50.0% | |
| ATTCTGGGTGGCTAAGCTGA+GGG | + | chr4.2:35284409-35284428 | MS.gene062997:CDS | 50.0% | |
| CATGGGTCCAGTTCATGATC+CGG | + | chr4.2:35283725-35283744 | MS.gene062997:CDS | 50.0% | |
| GCTGCACCGTAAACTTTCCA+TGG | - | chr4.2:35283447-35283466 | None:intergenic | 50.0% | |
| GCTGCCATATGTCGCCATTT+AGG | + | chr4.2:35283951-35283970 | MS.gene062997:CDS | 50.0% | |
| GGAGGCCCATGGAAAGTTTA+CGG | + | chr4.2:35283438-35283457 | MS.gene062997:CDS | 50.0% | |
| GGTGGTTGGAGTAACAGGAA+TGG | + | chr4.2:35283371-35283390 | MS.gene062997:CDS | 50.0% | |
| GTCCAGTTCATGATCCGGTT+CGG | + | chr4.2:35283730-35283749 | MS.gene062997:CDS | 50.0% | |
| GTTGGAGTAACAGGAATGGC+TGG | + | chr4.2:35283375-35283394 | MS.gene062997:CDS | 50.0% | |
| TACTCCAACCACCAGTGCTA+CGG | - | chr4.2:35283364-35283383 | None:intergenic | 50.0% | |
| TCCCAAGTGTACCTGTTTCC+TGG | - | chr4.2:35283993-35284012 | None:intergenic | 50.0% | |
| TTGGGTCCGTTCCAGTTTGT+AGG | + | chr4.2:35283593-35283612 | MS.gene062997:intron | 50.0% | |
| ! | ACGAAATTCCGTAGCACTGG+TGG | + | chr4.2:35283353-35283372 | MS.gene062997:CDS | 50.0% |
| ! | AGCTGAGTTGACAGCGTCAA+AGG | - | chr4.2:35283523-35283542 | None:intergenic | 50.0% |
| !! | AATTCCGTAGCACTGGTGGT+TGG | + | chr4.2:35283357-35283376 | MS.gene062997:CDS | 50.0% |
| CATGGGCCTCCAAGACAATC+AGG | - | chr4.2:35283429-35283448 | None:intergenic | 55.0% | |
| CTGATTGTCTTGGAGGCCCA+TGG | + | chr4.2:35283427-35283446 | MS.gene062997:CDS | 55.0% | |
| GACCGAACCGGATCATGAAC+TGG | - | chr4.2:35283735-35283754 | None:intergenic | 55.0% | |
| GATTCTGGGTGGCTAAGCTG+AGG | + | chr4.2:35284408-35284427 | MS.gene062997:CDS | 55.0% | |
| GGAACGGACCCAAAAGAGGT+GGG | - | chr4.2:35283586-35283605 | None:intergenic | 55.0% | |
| GGAAGAGGGAAACCAACCGT+CGG | - | chr4.2:35283481-35283500 | None:intergenic | 55.0% | |
| TGGAACGGACCCAAAAGAGG+TGG | - | chr4.2:35283587-35283606 | None:intergenic | 55.0% | |
| ! | AAGCAACGGTGCCAGTTCTG+CGG | + | chr4.2:35284303-35284322 | MS.gene062997:CDS | 55.0% |
| ! | GCACTGGTGGTTGGAGTAAC+AGG | + | chr4.2:35283366-35283385 | MS.gene062997:CDS | 55.0% |
| ! | GCTGCTTCAAGGCTTTGGCT+AGG | - | chr4.2:35283407-35283426 | None:intergenic | 55.0% |
| AGAGGGAAACCAACCGTCGG+CGG | - | chr4.2:35283478-35283497 | None:intergenic | 60.0% | |
| GAAACCAACCGTCGGCGGAG+CGG | - | chr4.2:35283473-35283492 | None:intergenic | 65.0% | |
| ! | CTCGCCGCTCCGCCGACGGT+TGG | + | chr4.2:35283466-35283485 | MS.gene062997:CDS | 80.0% |
| ! | GCAGCTCGCCGCTCCGCCGA+CGG | + | chr4.2:35283462-35283481 | MS.gene062997:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 35283345 | 35284463 | 35283345 | ID=MS.gene062997 |
| chr4.2 | mRNA | 35283345 | 35284463 | 35283345 | ID=MS.gene062997.t1;Parent=MS.gene062997 |
| chr4.2 | exon | 35283345 | 35283530 | 35283345 | ID=MS.gene062997.t1.exon1;Parent=MS.gene062997.t1 |
| chr4.2 | CDS | 35283345 | 35283530 | 35283345 | ID=cds.MS.gene062997.t1;Parent=MS.gene062997.t1 |
| chr4.2 | exon | 35283615 | 35284463 | 35283615 | ID=MS.gene062997.t1.exon2;Parent=MS.gene062997.t1 |
| chr4.2 | CDS | 35283615 | 35284463 | 35283615 | ID=cds.MS.gene062997.t1;Parent=MS.gene062997.t1 |
| Gene Sequence |
| Protein sequence |
