Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057770.t1 | XP_003607179.1 | 95.7 | 376 | 16 | 0 | 1 | 376 | 1 | 376 | 4.60E-212 | 746.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057770.t1 | A0A1C9CX66 | 43.4 | 371 | 199 | 7 | 6 | 372 | 27 | 390 | 3.0e-79 | 297.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057770.t1 | G7JMD3 | 95.7 | 376 | 16 | 0 | 1 | 376 | 1 | 376 | 3.3e-212 | 746.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050381 | MS.gene057770 | 0.808173 | 3.53E-50 | -1.69E-46 |
| MS.gene051127 | MS.gene057770 | 0.811576 | 6.54E-51 | -1.69E-46 |
| MS.gene053406 | MS.gene057770 | 0.821687 | 3.54E-53 | -1.69E-46 |
| MS.gene056313 | MS.gene057770 | 0.806626 | 7.51E-50 | -1.69E-46 |
| MS.gene056920 | MS.gene057770 | 0.809738 | 1.63E-50 | -1.69E-46 |
| MS.gene057770 | MS.gene062997 | 0.914688 | 1.43E-84 | -1.69E-46 |
| MS.gene057770 | MS.gene072806 | 0.805349 | 1.39E-49 | -1.69E-46 |
| MS.gene057770 | MS.gene24862 | 0.813646 | 2.30E-51 | -1.69E-46 |
| MS.gene057770 | MS.gene26294 | 0.803568 | 3.28E-49 | -1.69E-46 |
| MS.gene057770 | MS.gene27185 | 0.800437 | 1.44E-48 | -1.69E-46 |
| MS.gene057770 | MS.gene28395 | 0.800771 | 1.23E-48 | -1.69E-46 |
| MS.gene057770 | MS.gene30394 | 0.808049 | 3.75E-50 | -1.69E-46 |
| MS.gene057770 | MS.gene38173 | 0.808073 | 3.71E-50 | -1.69E-46 |
| MS.gene057770 | MS.gene44712 | 0.809856 | 1.54E-50 | -1.69E-46 |
| MS.gene057770 | MS.gene44720 | 0.821495 | 3.92E-53 | -1.69E-46 |
| MS.gene057770 | MS.gene44722 | 0.817566 | 3.09E-52 | -1.69E-46 |
| MS.gene057770 | MS.gene47719 | 0.800821 | 1.20E-48 | -1.69E-46 |
| MS.gene057770 | MS.gene48249 | 0.810736 | 9.94E-51 | -1.69E-46 |
| MS.gene057770 | MS.gene48885 | 0.805146 | 1.54E-49 | -1.69E-46 |
| MS.gene057770 | MS.gene48921 | 0.805001 | 1.65E-49 | -1.69E-46 |
| MS.gene057770 | MS.gene54029 | 0.80535 | 1.39E-49 | -1.69E-46 |
| MS.gene057770 | MS.gene65500 | 0.809734 | 1.63E-50 | -1.69E-46 |
| MS.gene057770 | MS.gene67371 | 0.802471 | 5.52E-49 | -1.69E-46 |
| MS.gene057770 | MS.gene80609 | 0.805892 | 1.07E-49 | -1.69E-46 |
| MS.gene057770 | MS.gene90192 | 0.801224 | 9.96E-49 | -1.69E-46 |
| MS.gene057770 | MS.gene91973 | 0.812562 | 3.98E-51 | -1.69E-46 |
| MS.gene057770 | MS.gene91976 | 0.807598 | 4.67E-50 | -1.69E-46 |
| MS.gene057770 | MS.gene91977 | 0.821725 | 3.47E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057770.t1 | MTR_4g073090 | 95.745 | 376 | 16 | 0 | 1 | 376 | 1 | 376 | 0.0 | 759 |
| MS.gene057770.t1 | MTR_4g121570 | 83.777 | 376 | 61 | 0 | 1 | 376 | 1 | 376 | 0.0 | 679 |
| MS.gene057770.t1 | MTR_4g121590 | 81.117 | 376 | 71 | 0 | 1 | 376 | 1 | 376 | 0.0 | 654 |
| MS.gene057770.t1 | MTR_3g102770 | 43.127 | 371 | 199 | 7 | 6 | 372 | 27 | 389 | 1.79e-97 | 295 |
| MS.gene057770.t1 | MTR_3g102730 | 43.200 | 375 | 194 | 9 | 6 | 372 | 27 | 390 | 2.95e-97 | 295 |
| MS.gene057770.t1 | MTR_3g013890 | 42.933 | 375 | 195 | 9 | 6 | 372 | 27 | 390 | 1.32e-96 | 293 |
| MS.gene057770.t1 | MTR_1g018610 | 42.246 | 374 | 205 | 7 | 2 | 372 | 58 | 423 | 3.71e-96 | 293 |
| MS.gene057770.t1 | MTR_3g102760 | 42.091 | 373 | 203 | 8 | 5 | 372 | 26 | 390 | 4.33e-96 | 291 |
| MS.gene057770.t1 | MTR_1g018590 | 41.622 | 370 | 206 | 6 | 6 | 372 | 32 | 394 | 5.30e-95 | 289 |
| MS.gene057770.t1 | MTR_1g018580 | 39.189 | 370 | 191 | 6 | 6 | 372 | 26 | 364 | 2.18e-85 | 263 |
| MS.gene057770.t1 | MTR_3g463660 | 36.412 | 379 | 221 | 11 | 4 | 372 | 7 | 375 | 9.26e-70 | 224 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene057770.t1 | AT4G24220 | 41.779 | 371 | 203 | 8 | 6 | 372 | 27 | 388 | 5.49e-95 | 289 |
| MS.gene057770.t1 | AT4G24220 | 41.779 | 371 | 203 | 8 | 6 | 372 | 26 | 387 | 6.07e-95 | 289 |
| MS.gene057770.t1 | AT5G58750 | 32.552 | 384 | 235 | 12 | 3 | 373 | 6 | 378 | 8.67e-59 | 195 |
| MS.gene057770.t1 | AT5G58750 | 32.552 | 384 | 235 | 12 | 3 | 373 | 14 | 386 | 1.30e-58 | 195 |
Find 113 sgRNAs with CRISPR-Local
Find 117 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAAGCACGTAATAGAAATT+TGG | 0.168674 | 4.4:-36461125 | None:intergenic |
| AAGAAGTCACCCACCTCTTT+TGG | 0.213578 | 4.4:+36460874 | MS.gene057770:CDS |
| CGTTTAAGAGTATCAGATTC+TGG | 0.234355 | 4.4:+36461705 | MS.gene057770:CDS |
| GACTTGATTGTCGAGGAATA+TGG | 0.263491 | 4.4:+36461554 | MS.gene057770:CDS |
| TTTCCTTCTTCCATCCTTGA+TGG | 0.275110 | 4.4:+36460789 | MS.gene057770:CDS |
| TTCCGGTTTGGAGTGTTATA+TGG | 0.277420 | 4.4:-36461004 | None:intergenic |
| GCTGCCATATGTCGCCATTT+AGG | 0.280720 | 4.4:+36461263 | MS.gene057770:CDS |
| ATGAACAAGAGTAAGGATTA+TGG | 0.289410 | 4.4:+36461662 | MS.gene057770:CDS |
| CATCGATCCTCTATCATAAT+AGG | 0.292341 | 4.4:+36461191 | MS.gene057770:CDS |
| AAAAGAGGTGGGTGACTTCT+TGG | 0.296908 | 4.4:-36460872 | None:intergenic |
| GGAAGCAATTTCCTGCAATT+TGG | 0.303114 | 4.4:-36461588 | None:intergenic |
| AACGAAAAGGTAATCCTAAA+TGG | 0.324790 | 4.4:-36461277 | None:intergenic |
| TGCGTGATAAGGGTGAGATT+TGG | 0.330513 | 4.4:+36461531 | MS.gene057770:CDS |
| ATCAGGCTGCTTCAAGGCTT+TGG | 0.337780 | 4.4:-36460709 | None:intergenic |
| GCACTGGTGGTTGGAGTAAC+AGG | 0.353312 | 4.4:+36460666 | MS.gene057770:CDS |
| CAAGCACGTAATAGAAATTT+GGG | 0.353974 | 4.4:-36461124 | None:intergenic |
| GGAGGCCCATGGAAAGTTTA+CGG | 0.363918 | 4.4:+36460738 | MS.gene057770:CDS |
| GCGTGATAAGGGTGAGATTT+GGG | 0.371349 | 4.4:+36461532 | MS.gene057770:CDS |
| CTTCTTCATCACCTACAAAC+TGG | 0.385026 | 4.4:-36460905 | None:intergenic |
| CAAGGAAGAGTTTGATTTGG+TGG | 0.392348 | 4.4:+36461502 | MS.gene057770:CDS |
| TGGGTCACGTTCCAGTTTGT+AGG | 0.396862 | 4.4:+36460894 | MS.gene057770:CDS |
| TGGGTGACTTCTTGGGATAT+TGG | 0.406438 | 4.4:-36460864 | None:intergenic |
| ACCCATGTAATGTTTGGTTC+CGG | 0.408112 | 4.4:-36461021 | None:intergenic |
| AAGCAGCCTGATTGTCTTGG+AGG | 0.408544 | 4.4:+36460720 | MS.gene057770:CDS |
| TCCCAAGTGTACCTGTTTCC+TGG | 0.408987 | 4.4:-36461302 | None:intergenic |
| TGTAATGTTTGGTTCCGGTT+TGG | 0.409989 | 4.4:-36461016 | None:intergenic |
| TGTTTCGTGGCATATAAGTT+TGG | 0.415707 | 4.4:-36461069 | None:intergenic |
| ACTTGATTGTCGAGGAATAT+GGG | 0.422566 | 4.4:+36461555 | MS.gene057770:CDS |
| CTCGCCGCTCCGCCGACGGT+TGG | 0.426749 | 4.4:+36460766 | MS.gene057770:CDS |
| CGTTACATCCTATGCACCTT+CGG | 0.429287 | 4.4:+36461154 | MS.gene057770:CDS |
| TCCGGTTTGGAGTGTTATAT+GGG | 0.429734 | 4.4:-36461003 | None:intergenic |
| TGAAACTCAAACCGCAGAAC+TGG | 0.435621 | 4.4:-36461626 | None:intergenic |
| GACCGAACCGGATCATGAAC+TGG | 0.436608 | 4.4:-36461044 | None:intergenic |
| TGAACAAGAGTAAGGATTAT+GGG | 0.445952 | 4.4:+36461663 | MS.gene057770:CDS |
| AACCGGAACCAAACATTACA+TGG | 0.447203 | 4.4:+36461019 | MS.gene057770:CDS |
| TGACAAGGAAGAGTTTGATT+TGG | 0.447305 | 4.4:+36461499 | MS.gene057770:CDS |
| CATGGGCCTCCAAGACAATC+AGG | 0.450062 | 4.4:-36460726 | None:intergenic |
| TTGAAGCAGCCTGATTGTCT+TGG | 0.454331 | 4.4:+36460717 | MS.gene057770:CDS |
| AAGACAATCAGGCTGCTTCA+AGG | 0.459742 | 4.4:-36460715 | None:intergenic |
| AAAGAGGTGGGTGACTTCTT+GGG | 0.459855 | 4.4:-36460871 | None:intergenic |
| AACTGGCACCGTTGCTTCAA+AGG | 0.459967 | 4.4:-36461609 | None:intergenic |
| GCAGCTCGCCGCTCCGCCGA+CGG | 0.460373 | 4.4:+36460762 | MS.gene057770:CDS |
| GGTGGAGTTAATGCGTGATA+AGG | 0.462624 | 4.4:+36461520 | MS.gene057770:CDS |
| GCTTCATAAGACCAAATTGC+AGG | 0.471225 | 4.4:+36461577 | MS.gene057770:CDS |
| ATAAGTTTGGTGGACCGAAC+CGG | 0.472714 | 4.4:-36461056 | None:intergenic |
| CGTTTGTGCAATTAAACGCT+TGG | 0.475175 | 4.4:-36461403 | None:intergenic |
| GTTTAAGAGTATCAGATTCT+GGG | 0.476243 | 4.4:+36461706 | MS.gene057770:CDS |
| TTCGTGGCATATAAGTTTGG+TGG | 0.479076 | 4.4:-36461066 | None:intergenic |
| AACTGGACCCATGTAATGTT+TGG | 0.479645 | 4.4:-36461027 | None:intergenic |
| GTTGGAGTAACAGGAATGGC+TGG | 0.481819 | 4.4:+36460675 | MS.gene057770:CDS |
| CAAGCGTTTAATTGCACAAA+CGG | 0.481885 | 4.4:+36461404 | MS.gene057770:CDS |
| GAGTGTTATATGGGTGAGAG+AGG | 0.483711 | 4.4:-36460994 | None:intergenic |
| TAATCCTAAATGGCGACATA+TGG | 0.484403 | 4.4:-36461267 | None:intergenic |
| ATATGGGTGAGAGAGGAAGA+TGG | 0.485484 | 4.4:-36460987 | None:intergenic |
| GCTGCTTCAAGGCTTTGGCT+AGG | 0.489750 | 4.4:-36460704 | None:intergenic |
| ACGTAATAGAAATTTGGGTA+AGG | 0.497259 | 4.4:-36461119 | None:intergenic |
| GTGGAGTTAATGCGTGATAA+GGG | 0.499998 | 4.4:+36461521 | MS.gene057770:CDS |
| CGTGGCATATTCTCATGAAA+AGG | 0.500622 | 4.4:-36461092 | None:intergenic |
| GCTGCACCGTAAACTTTCCA+TGG | 0.501136 | 4.4:-36460744 | None:intergenic |
| CATGGGTCCAGTTCATGATC+CGG | 0.501165 | 4.4:+36461037 | MS.gene057770:CDS |
| AGGAAGATGGAGAAGATTTG+AGG | 0.504270 | 4.4:-36460974 | None:intergenic |
| TGACATACCTATTATGATAG+AGG | 0.505635 | 4.4:-36461198 | None:intergenic |
| AGCATGTTGTGTGCACTCCT+TGG | 0.507279 | 4.4:-36461221 | None:intergenic |
| ACCCATATAACACTCCAAAC+CGG | 0.508475 | 4.4:+36461002 | MS.gene057770:CDS |
| GTCCAGTTCATGATCCGGTT+CGG | 0.509772 | 4.4:+36461042 | MS.gene057770:CDS |
| ATCCAGGAAACAGGTACACT+TGG | 0.510852 | 4.4:+36461300 | MS.gene057770:CDS |
| CTGTTTCCTGGATAACGAAA+AGG | 0.512273 | 4.4:-36461290 | None:intergenic |
| AGCTGAGTTGACAGCGTCAA+AGG | 0.516806 | 4.4:-36460820 | None:intergenic |
| TTGGGATATTGGTAACAGCT+TGG | 0.520967 | 4.4:-36460853 | None:intergenic |
| ATCTAGTATGAACAAGAGTA+AGG | 0.523341 | 4.4:+36461655 | MS.gene057770:CDS |
| GCAATTCAATGTTGGTAGAC+GGG | 0.530484 | 4.4:-36461758 | None:intergenic |
| TGCAATTCAATGTTGGTAGA+CGG | 0.532767 | 4.4:-36461759 | None:intergenic |
| TCTCATGAAAAGGTGTTTCG+TGG | 0.533034 | 4.4:-36461082 | None:intergenic |
| AAACCATCAAGGATGGAAGA+AGG | 0.533134 | 4.4:-36460792 | None:intergenic |
| AATTGCTTCCTTTGAAGCAA+CGG | 0.544770 | 4.4:+36461601 | MS.gene057770:CDS |
| AAATTTCTATTACGTGCTTG+AGG | 0.545697 | 4.4:+36461127 | MS.gene057770:CDS |
| CGTAATAGAAATTTGGGTAA+GGG | 0.551405 | 4.4:-36461118 | None:intergenic |
| GGTGATGAAACCATCAAGGA+TGG | 0.551500 | 4.4:-36460799 | None:intergenic |
| TTCTGTGATATGACGGATGT+AGG | 0.555750 | 4.4:+36461329 | MS.gene057770:CDS |
| TGTACGAAATTCCGTAGCAC+TGG | 0.559150 | 4.4:+36460650 | MS.gene057770:CDS |
| CCGACAATGCAATTCAATGT+TGG | 0.559823 | 4.4:-36461766 | None:intergenic |
| TACTCCAACCACCAGTGCTA+CGG | 0.560800 | 4.4:-36460661 | None:intergenic |
| AGATGGAGAAGATTTGAGGA+CGG | 0.565001 | 4.4:-36460970 | None:intergenic |
| CTGATTGTCTTGGAGGCCCA+TGG | 0.579424 | 4.4:+36460727 | MS.gene057770:CDS |
| GAAACCAACCGTCGGCGGAG+CGG | 0.581110 | 4.4:-36460770 | None:intergenic |
| ACTGGAACGTGACCCAAAAG+AGG | 0.594156 | 4.4:-36460887 | None:intergenic |
| TATGTGGATGTTGCTTAGTG+AGG | 0.596746 | 4.4:+36461448 | MS.gene057770:CDS |
| GATTCTGGGTGGCTAAGCTG+AGG | 0.597911 | 4.4:+36461720 | MS.gene057770:CDS |
| GTATGTAACCGAAGGTGCAT+AGG | 0.598466 | 4.4:-36461162 | None:intergenic |
| CAAAGGTGATGAAACCATCA+AGG | 0.599116 | 4.4:-36460803 | None:intergenic |
| ACGAAATTCCGTAGCACTGG+TGG | 0.600681 | 4.4:+36460653 | MS.gene057770:CDS |
| GGTGAGAACATTAAGAAGCA+TGG | 0.604108 | 4.4:-36460949 | None:intergenic |
| GCTTGCAAAGCAACATGTGT+GGG | 0.604170 | 4.4:+36461355 | MS.gene057770:CDS |
| AAGCAACGGTGCCAGTTCTG+CGG | 0.604203 | 4.4:+36461615 | MS.gene057770:CDS |
| TTGGAGTAACAGGAATGGCT+GGG | 0.618664 | 4.4:+36460676 | MS.gene057770:CDS |
| GGAGCATTTCTGTGATATGA+CGG | 0.620486 | 4.4:+36461322 | MS.gene057770:CDS |
| AATTCCGTAGCACTGGTGGT+TGG | 0.620890 | 4.4:+36460657 | MS.gene057770:CDS |
| GATTTGGGACTTGATTGTCG+AGG | 0.621595 | 4.4:+36461547 | MS.gene057770:CDS |
| AAATTTGGGTAAGGGAGTCG+TGG | 0.629424 | 4.4:-36461110 | None:intergenic |
| GTTTGTGGAGTTGAATGACA+AGG | 0.631208 | 4.4:+36461484 | MS.gene057770:CDS |
| CTGCACCGTAAACTTTCCAT+GGG | 0.632624 | 4.4:-36460743 | None:intergenic |
| ATTCTGGGTGGCTAAGCTGA+GGG | 0.633204 | 4.4:+36461721 | MS.gene057770:CDS |
| TGCTTGCAAAGCAACATGTG+TGG | 0.638014 | 4.4:+36461354 | MS.gene057770:CDS |
| TGTATTGAGTATGTAACCGA+AGG | 0.639133 | 4.4:-36461170 | None:intergenic |
| GGAACGTGACCCAAAAGAGG+TGG | 0.641679 | 4.4:-36460884 | None:intergenic |
| TCCAGGAAACAGGTACACTT+GGG | 0.643371 | 4.4:+36461301 | MS.gene057770:CDS |
| ACCGGAACCAAACATTACAT+GGG | 0.645400 | 4.4:+36461020 | MS.gene057770:CDS |
| AGAAGGAAACCAACCGTCGG+CGG | 0.647598 | 4.4:-36460775 | None:intergenic |
| TCATAATAGGTATGTCACCA+AGG | 0.670293 | 4.4:+36461204 | MS.gene057770:CDS |
| GAACGTGACCCAAAAGAGGT+GGG | 0.673571 | 4.4:-36460883 | None:intergenic |
| TAAGAGTATCAGATTCTGGG+TGG | 0.693537 | 4.4:+36461709 | MS.gene057770:CDS |
| GGTGGTTGGAGTAACAGGAA+TGG | 0.704306 | 4.4:+36460671 | MS.gene057770:CDS |
| GGAAGAAGGAAACCAACCGT+CGG | 0.707712 | 4.4:-36460778 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| AAATTTCTATTACGTGCTTG+AGG | + | chr4.4:36461127-36461146 | MS.gene057770:CDS | 30.0% | |
| AACGAAAAGGTAATCCTAAA+TGG | - | chr4.4:36461280-36461299 | None:intergenic | 30.0% | |
| ACGTAATAGAAATTTGGGTA+AGG | - | chr4.4:36461122-36461141 | None:intergenic | 30.0% | |
| ATCTAGTATGAACAAGAGTA+AGG | + | chr4.4:36461655-36461674 | MS.gene057770:CDS | 30.0% | |
| ATGAACAAGAGTAAGGATTA+TGG | + | chr4.4:36461662-36461681 | MS.gene057770:CDS | 30.0% | |
| CAAGCACGTAATAGAAATTT+GGG | - | chr4.4:36461127-36461146 | None:intergenic | 30.0% | |
| CGTAATAGAAATTTGGGTAA+GGG | - | chr4.4:36461121-36461140 | None:intergenic | 30.0% | |
| TCAAGCACGTAATAGAAATT+TGG | - | chr4.4:36461128-36461147 | None:intergenic | 30.0% | |
| TGAACAAGAGTAAGGATTAT+GGG | + | chr4.4:36461663-36461682 | MS.gene057770:CDS | 30.0% | |
| TGACATACCTATTATGATAG+AGG | - | chr4.4:36461201-36461220 | None:intergenic | 30.0% | |
| ! | GGTTTTTGATGTTAAGTTTG+TGG | + | chr4.4:36461469-36461488 | MS.gene057770:CDS | 30.0% |
| !! | GTTTAAGAGTATCAGATTCT+GGG | + | chr4.4:36461706-36461725 | MS.gene057770:CDS | 30.0% |
| !!! | AAGAAGCATGGTTTTGTTAA+CGG | - | chr4.4:36460940-36460959 | None:intergenic | 30.0% |
| ACTTGATTGTCGAGGAATAT+GGG | + | chr4.4:36461555-36461574 | MS.gene057770:CDS | 35.0% | |
| CAAGCGTTTAATTGCACAAA+CGG | + | chr4.4:36461404-36461423 | MS.gene057770:CDS | 35.0% | |
| CATCGATCCTCTATCATAAT+AGG | + | chr4.4:36461191-36461210 | MS.gene057770:CDS | 35.0% | |
| TAATCCTAAATGGCGACATA+TGG | - | chr4.4:36461270-36461289 | None:intergenic | 35.0% | |
| TCATAATAGGTATGTCACCA+AGG | + | chr4.4:36461204-36461223 | MS.gene057770:CDS | 35.0% | |
| TGACAAGGAAGAGTTTGATT+TGG | + | chr4.4:36461499-36461518 | MS.gene057770:CDS | 35.0% | |
| TGTATTGAGTATGTAACCGA+AGG | - | chr4.4:36461173-36461192 | None:intergenic | 35.0% | |
| TGTTTCGTGGCATATAAGTT+TGG | - | chr4.4:36461072-36461091 | None:intergenic | 35.0% | |
| !! | AATTGCTTCCTTTGAAGCAA+CGG | + | chr4.4:36461601-36461620 | MS.gene057770:CDS | 35.0% |
| !! | CGTTTAAGAGTATCAGATTC+TGG | + | chr4.4:36461705-36461724 | MS.gene057770:CDS | 35.0% |
| !! | TTTTCACTTGGAAGAGTATG+TGG | + | chr4.4:36461432-36461451 | MS.gene057770:CDS | 35.0% |
| AAACCATCAAGGATGGAAGA+AGG | - | chr4.4:36460795-36460814 | None:intergenic | 40.0% | |
| AACCGGAACCAAACATTACA+TGG | + | chr4.4:36461019-36461038 | MS.gene057770:CDS | 40.0% | |
| AACTGGACCCATGTAATGTT+TGG | - | chr4.4:36461030-36461049 | None:intergenic | 40.0% | |
| ACCCATATAACACTCCAAAC+CGG | + | chr4.4:36461002-36461021 | MS.gene057770:CDS | 40.0% | |
| ACCGGAACCAAACATTACAT+GGG | + | chr4.4:36461020-36461039 | MS.gene057770:CDS | 40.0% | |
| AGATGGAGAAGATTTGAGGA+CGG | - | chr4.4:36460973-36460992 | None:intergenic | 40.0% | |
| AGGAAGATGGAGAAGATTTG+AGG | - | chr4.4:36460977-36460996 | None:intergenic | 40.0% | |
| CAAAGGTGATGAAACCATCA+AGG | - | chr4.4:36460806-36460825 | None:intergenic | 40.0% | |
| CGTGGCATATTCTCATGAAA+AGG | - | chr4.4:36461095-36461114 | None:intergenic | 40.0% | |
| CGTTTGTGCAATTAAACGCT+TGG | - | chr4.4:36461406-36461425 | None:intergenic | 40.0% | |
| CTGTTTCCTGGATAACGAAA+AGG | - | chr4.4:36461293-36461312 | None:intergenic | 40.0% | |
| CTTCTTCATCACCTACAAAC+TGG | - | chr4.4:36460908-36460927 | None:intergenic | 40.0% | |
| GACTTGATTGTCGAGGAATA+TGG | + | chr4.4:36461554-36461573 | MS.gene057770:CDS | 40.0% | |
| GCTTCATAAGACCAAATTGC+AGG | + | chr4.4:36461577-36461596 | MS.gene057770:CDS | 40.0% | |
| GGAAGCAATTTCCTGCAATT+TGG | - | chr4.4:36461591-36461610 | None:intergenic | 40.0% | |
| GGTGAGAACATTAAGAAGCA+TGG | - | chr4.4:36460952-36460971 | None:intergenic | 40.0% | |
| GTGGAGTTAATGCGTGATAA+GGG | + | chr4.4:36461521-36461540 | MS.gene057770:CDS | 40.0% | |
| GTTTGTGGAGTTGAATGACA+AGG | + | chr4.4:36461484-36461503 | MS.gene057770:CDS | 40.0% | |
| TTCGTGGCATATAAGTTTGG+TGG | - | chr4.4:36461069-36461088 | None:intergenic | 40.0% | |
| TTTCCTTCTTCCATCCTTGA+TGG | + | chr4.4:36460789-36460808 | MS.gene057770:CDS | 40.0% | |
| ! | ACCCATGTAATGTTTGGTTC+CGG | - | chr4.4:36461024-36461043 | None:intergenic | 40.0% |
| ! | CTTTTCGTTATCCAGGAAAC+AGG | + | chr4.4:36461291-36461310 | MS.gene057770:CDS | 40.0% |
| ! | GGAGCATTTCTGTGATATGA+CGG | + | chr4.4:36461322-36461341 | MS.gene057770:CDS | 40.0% |
| ! | GGATTACCTTTTCGTTATCC+AGG | + | chr4.4:36461284-36461303 | MS.gene057770:CDS | 40.0% |
| ! | TATGTGGATGTTGCTTAGTG+AGG | + | chr4.4:36461448-36461467 | MS.gene057770:CDS | 40.0% |
| ! | TGTAATGTTTGGTTCCGGTT+TGG | - | chr4.4:36461019-36461038 | None:intergenic | 40.0% |
| ! | TTGGGATATTGGTAACAGCT+TGG | - | chr4.4:36460856-36460875 | None:intergenic | 40.0% |
| !! | CAAGGAAGAGTTTGATTTGG+TGG | + | chr4.4:36461502-36461521 | MS.gene057770:CDS | 40.0% |
| !! | TAAGAGTATCAGATTCTGGG+TGG | + | chr4.4:36461709-36461728 | MS.gene057770:CDS | 40.0% |
| !! | TCCGGTTTGGAGTGTTATAT+GGG | - | chr4.4:36461006-36461025 | None:intergenic | 40.0% |
| !! | TCTCATGAAAAGGTGTTTCG+TGG | - | chr4.4:36461085-36461104 | None:intergenic | 40.0% |
| !! | TTCCGGTTTGGAGTGTTATA+TGG | - | chr4.4:36461007-36461026 | None:intergenic | 40.0% |
| !! | TTCTGTGATATGACGGATGT+AGG | + | chr4.4:36461329-36461348 | MS.gene057770:CDS | 40.0% |
| AAAAGAGGTGGGTGACTTCT+TGG | - | chr4.4:36460875-36460894 | None:intergenic | 45.0% | |
| AAAGAGGTGGGTGACTTCTT+GGG | - | chr4.4:36460874-36460893 | None:intergenic | 45.0% | |
| AAATTTGGGTAAGGGAGTCG+TGG | - | chr4.4:36461113-36461132 | None:intergenic | 45.0% | |
| AAGACAATCAGGCTGCTTCA+AGG | - | chr4.4:36460718-36460737 | None:intergenic | 45.0% | |
| ATATGGGTGAGAGAGGAAGA+TGG | - | chr4.4:36460990-36461009 | None:intergenic | 45.0% | |
| ATCCAGGAAACAGGTACACT+TGG | + | chr4.4:36461300-36461319 | MS.gene057770:CDS | 45.0% | |
| CGTTACATCCTATGCACCTT+CGG | + | chr4.4:36461154-36461173 | MS.gene057770:CDS | 45.0% | |
| CTGCACCGTAAACTTTCCAT+GGG | - | chr4.4:36460746-36460765 | None:intergenic | 45.0% | |
| GAGTGTTATATGGGTGAGAG+AGG | - | chr4.4:36460997-36461016 | None:intergenic | 45.0% | |
| GCGTGATAAGGGTGAGATTT+GGG | + | chr4.4:36461532-36461551 | MS.gene057770:CDS | 45.0% | |
| GCTTGCAAAGCAACATGTGT+GGG | + | chr4.4:36461355-36461374 | MS.gene057770:CDS | 45.0% | |
| GGTGATGAAACCATCAAGGA+TGG | - | chr4.4:36460802-36460821 | None:intergenic | 45.0% | |
| GGTGGAGTTAATGCGTGATA+AGG | + | chr4.4:36461520-36461539 | MS.gene057770:CDS | 45.0% | |
| TCCAGGAAACAGGTACACTT+GGG | + | chr4.4:36461301-36461320 | MS.gene057770:CDS | 45.0% | |
| TGAAACTCAAACCGCAGAAC+TGG | - | chr4.4:36461629-36461648 | None:intergenic | 45.0% | |
| TGCGTGATAAGGGTGAGATT+TGG | + | chr4.4:36461531-36461550 | MS.gene057770:CDS | 45.0% | |
| TGCTTGCAAAGCAACATGTG+TGG | + | chr4.4:36461354-36461373 | MS.gene057770:CDS | 45.0% | |
| TGGGTGACTTCTTGGGATAT+TGG | - | chr4.4:36460867-36460886 | None:intergenic | 45.0% | |
| TGTACGAAATTCCGTAGCAC+TGG | + | chr4.4:36460650-36460669 | MS.gene057770:CDS | 45.0% | |
| TTGAAGCAGCCTGATTGTCT+TGG | + | chr4.4:36460717-36460736 | MS.gene057770:CDS | 45.0% | |
| TTGGAGTAACAGGAATGGCT+GGG | + | chr4.4:36460676-36460695 | MS.gene057770:CDS | 45.0% | |
| ! | AAGAAGTCACCCACCTCTTT+TGG | + | chr4.4:36460874-36460893 | MS.gene057770:CDS | 45.0% |
| ! | AGAAGTCACCCACCTCTTTT+GGG | + | chr4.4:36460875-36460894 | MS.gene057770:CDS | 45.0% |
| ! | ATAAGTTTGGTGGACCGAAC+CGG | - | chr4.4:36461059-36461078 | None:intergenic | 45.0% |
| ! | CAAACGGCGATGTTTTCACT+TGG | + | chr4.4:36461420-36461439 | MS.gene057770:CDS | 45.0% |
| ! | GATTTGGGACTTGATTGTCG+AGG | + | chr4.4:36461547-36461566 | MS.gene057770:CDS | 45.0% |
| ! | GTATGTAACCGAAGGTGCAT+AGG | - | chr4.4:36461165-36461184 | None:intergenic | 45.0% |
| AACTGGCACCGTTGCTTCAA+AGG | - | chr4.4:36461612-36461631 | None:intergenic | 50.0% | |
| AAGCAGCCTGATTGTCTTGG+AGG | + | chr4.4:36460720-36460739 | MS.gene057770:CDS | 50.0% | |
| ACTGGAACGTGACCCAAAAG+AGG | - | chr4.4:36460890-36460909 | None:intergenic | 50.0% | |
| AGCATGTTGTGTGCACTCCT+TGG | - | chr4.4:36461224-36461243 | None:intergenic | 50.0% | |
| ATCAGGCTGCTTCAAGGCTT+TGG | - | chr4.4:36460712-36460731 | None:intergenic | 50.0% | |
| ATTCTGGGTGGCTAAGCTGA+GGG | + | chr4.4:36461721-36461740 | MS.gene057770:CDS | 50.0% | |
| CATGGGTCCAGTTCATGATC+CGG | + | chr4.4:36461037-36461056 | MS.gene057770:CDS | 50.0% | |
| GAACGTGACCCAAAAGAGGT+GGG | - | chr4.4:36460886-36460905 | None:intergenic | 50.0% | |
| GCTGCACCGTAAACTTTCCA+TGG | - | chr4.4:36460747-36460766 | None:intergenic | 50.0% | |
| GCTGCCATATGTCGCCATTT+AGG | + | chr4.4:36461263-36461282 | MS.gene057770:CDS | 50.0% | |
| GGAAGAAGGAAACCAACCGT+CGG | - | chr4.4:36460781-36460800 | None:intergenic | 50.0% | |
| GGAGGCCCATGGAAAGTTTA+CGG | + | chr4.4:36460738-36460757 | MS.gene057770:CDS | 50.0% | |
| GGTGGTTGGAGTAACAGGAA+TGG | + | chr4.4:36460671-36460690 | MS.gene057770:CDS | 50.0% | |
| GTCCAGTTCATGATCCGGTT+CGG | + | chr4.4:36461042-36461061 | MS.gene057770:CDS | 50.0% | |
| GTTGGAGTAACAGGAATGGC+TGG | + | chr4.4:36460675-36460694 | MS.gene057770:CDS | 50.0% | |
| TACTCCAACCACCAGTGCTA+CGG | - | chr4.4:36460664-36460683 | None:intergenic | 50.0% | |
| TCCCAAGTGTACCTGTTTCC+TGG | - | chr4.4:36461305-36461324 | None:intergenic | 50.0% | |
| TGGGTCACGTTCCAGTTTGT+AGG | + | chr4.4:36460894-36460913 | MS.gene057770:CDS | 50.0% | |
| ! | ACGAAATTCCGTAGCACTGG+TGG | + | chr4.4:36460653-36460672 | MS.gene057770:CDS | 50.0% |
| ! | AGCTGAGTTGACAGCGTCAA+AGG | - | chr4.4:36460823-36460842 | None:intergenic | 50.0% |
| !! | AATTCCGTAGCACTGGTGGT+TGG | + | chr4.4:36460657-36460676 | MS.gene057770:CDS | 50.0% |
| AGAAGGAAACCAACCGTCGG+CGG | - | chr4.4:36460778-36460797 | None:intergenic | 55.0% | |
| CATGGGCCTCCAAGACAATC+AGG | - | chr4.4:36460729-36460748 | None:intergenic | 55.0% | |
| CTGATTGTCTTGGAGGCCCA+TGG | + | chr4.4:36460727-36460746 | MS.gene057770:CDS | 55.0% | |
| GACCGAACCGGATCATGAAC+TGG | - | chr4.4:36461047-36461066 | None:intergenic | 55.0% | |
| GATTCTGGGTGGCTAAGCTG+AGG | + | chr4.4:36461720-36461739 | MS.gene057770:CDS | 55.0% | |
| GGAACGTGACCCAAAAGAGG+TGG | - | chr4.4:36460887-36460906 | None:intergenic | 55.0% | |
| ! | AAGCAACGGTGCCAGTTCTG+CGG | + | chr4.4:36461615-36461634 | MS.gene057770:CDS | 55.0% |
| ! | GCACTGGTGGTTGGAGTAAC+AGG | + | chr4.4:36460666-36460685 | MS.gene057770:CDS | 55.0% |
| ! | GCTGCTTCAAGGCTTTGGCT+AGG | - | chr4.4:36460707-36460726 | None:intergenic | 55.0% |
| GAAACCAACCGTCGGCGGAG+CGG | - | chr4.4:36460773-36460792 | None:intergenic | 65.0% | |
| ! | CTCGCCGCTCCGCCGACGGT+TGG | + | chr4.4:36460766-36460785 | MS.gene057770:CDS | 80.0% |
| ! | GCAGCTCGCCGCTCCGCCGA+CGG | + | chr4.4:36460762-36460781 | MS.gene057770:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 36460645 | 36461775 | 36460645 | ID=MS.gene057770 |
| chr4.4 | mRNA | 36460645 | 36461775 | 36460645 | ID=MS.gene057770.t1;Parent=MS.gene057770 |
| chr4.4 | exon | 36460645 | 36461775 | 36460645 | ID=MS.gene057770.t1.exon1;Parent=MS.gene057770.t1 |
| chr4.4 | CDS | 36460645 | 36461775 | 36460645 | ID=cds.MS.gene057770.t1;Parent=MS.gene057770.t1 |
| Gene Sequence |
| Protein sequence |
