AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene050381


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050381.t1 MTR_5g010640 98.305 236 4 0 1 236 1 236 2.04e-172 474
MS.gene050381.t1 MTR_8g096900 55.508 236 92 3 3 236 24 248 3.82e-91 268
MS.gene050381.t1 MTR_5g010635 57.477 214 82 1 23 236 21 225 5.86e-89 263
MS.gene050381.t1 MTR_8g075510 41.350 237 120 8 11 236 16 244 4.57e-51 166
MS.gene050381.t1 MTR_1g025420 40.800 250 119 8 8 235 3 245 6.11e-51 167
MS.gene050381.t1 MTR_1g025420 40.800 250 119 8 8 235 3 245 1.00e-50 168
MS.gene050381.t1 MTR_5g059200 41.129 248 122 8 1 235 3 239 1.69e-50 166
MS.gene050381.t1 MTR_8g037890 40.392 255 125 9 1 236 1 247 3.62e-50 166
MS.gene050381.t1 MTR_8g075510 41.102 236 120 8 11 235 16 243 1.12e-49 165
MS.gene050381.t1 MTR_3g114030 42.017 238 109 8 20 236 1 230 1.41e-49 162
MS.gene050381.t1 MTR_8g036215 39.200 250 122 9 3 235 1 237 7.13e-49 160
MS.gene050381.t1 MTR_5g022350 41.004 239 120 10 9 236 15 243 9.04e-49 162
MS.gene050381.t1 MTR_8g056820 38.911 257 126 9 1 236 1 247 1.19e-48 160
MS.gene050381.t1 MTR_8g075550 42.324 241 107 8 19 235 21 253 4.79e-48 160
MS.gene050381.t1 MTR_8g107140 39.921 253 124 8 2 236 3 245 5.57e-48 159
MS.gene050381.t1 MTR_3g111620 37.795 254 132 9 1 236 1 246 2.31e-47 157
MS.gene050381.t1 MTR_5g022310 38.610 259 128 9 1 236 1 251 3.38e-47 157
MS.gene050381.t1 MTR_5g022310 38.610 259 128 9 1 236 1 251 8.65e-47 157
MS.gene050381.t1 MTR_1g021945 41.126 231 111 7 23 236 23 245 9.51e-47 155
MS.gene050381.t1 MTR_6g079580 38.340 253 123 10 4 236 1 240 1.13e-46 155
MS.gene050381.t1 MTR_7g062610 36.694 248 132 8 6 236 3 242 6.13e-46 153
MS.gene050381.t1 MTR_8g096910 46.296 162 80 3 1 161 1 156 7.86e-46 150
MS.gene050381.t1 MTR_4g073730 38.525 244 121 8 14 236 13 248 1.23e-45 154
MS.gene050381.t1 MTR_4g073720 38.956 249 128 10 1 235 1 239 1.83e-45 155
MS.gene050381.t1 MTR_4g073730 38.525 244 121 8 14 236 13 248 2.27e-45 154
MS.gene050381.t1 MTR_3g068015 36.719 256 130 11 5 236 1 248 1.10e-44 150
MS.gene050381.t1 MTR_2g069660 37.200 250 132 7 5 236 1 243 3.96e-44 149
MS.gene050381.t1 MTR_1g062630 37.719 228 116 8 27 236 23 242 7.41e-43 146
MS.gene050381.t1 MTR_8g096920 46.914 162 76 3 1 161 1 153 4.57e-42 141
MS.gene050381.t1 MTR_2g067980 40.726 248 114 11 11 236 11 247 3.24e-41 150
MS.gene050381.t1 MTR_2g068655 38.197 233 117 9 23 236 28 252 3.97e-41 142
MS.gene050381.t1 MTR_1g062590 36.800 250 122 9 15 236 1 242 5.73e-41 140
MS.gene050381.t1 MTR_7g102380 34.000 250 138 9 5 236 1 241 4.72e-40 138
MS.gene050381.t1 MTR_1g062350 37.719 228 116 8 27 236 23 242 4.61e-39 135
MS.gene050381.t1 MTR_1g062340 35.600 250 135 8 5 236 1 242 4.66e-39 135
MS.gene050381.t1 MTR_2g068030 40.254 236 112 10 20 235 17 243 1.16e-38 135
MS.gene050381.t1 MTR_1g062370 37.281 228 117 8 27 236 23 242 1.41e-38 134
MS.gene050381.t1 MTR_1g062660 35.887 248 132 9 8 236 3 242 3.77e-38 133
MS.gene050381.t1 MTR_4g063630 33.471 242 134 8 14 235 17 251 2.82e-37 131
MS.gene050381.t1 MTR_6g009480 35.178 253 133 11 7 236 8 252 6.53e-36 128
MS.gene050381.t1 MTR_2g067990 40.465 215 107 9 25 236 26 222 1.35e-32 125
MS.gene050381.t1 MTR_1g062690 32.800 250 119 9 4 236 1 218 8.49e-30 111
MS.gene050381.t1 MTR_1g062390 29.084 251 144 9 3 236 5 238 4.57e-26 102
MS.gene050381.t1 MTR_2g067970 39.247 186 92 9 64 236 5 182 7.42e-26 105
MS.gene050381.t1 MTR_8g089020 43.382 136 61 5 100 228 31 157 1.62e-24 95.5
MS.gene050381.t1 MTR_5g023850 36.747 166 90 5 13 163 13 178 5.35e-24 95.9
MS.gene050381.t1 MTR_5g022350 39.706 136 72 6 9 137 80 212 9.01e-21 87.4
MS.gene050381.t1 MTR_7g076360 29.524 210 88 7 21 226 3 156 1.87e-15 72.0
MS.gene050381.t1 MTR_2g063150 26.540 211 130 8 30 224 38 239 5.03e-14 69.7
MS.gene050381.t1 MTR_5g068670 46.970 66 33 2 70 134 25 89 2.32e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050381.t1 AT4G11650 57.456 228 87 2 9 236 6 223 1.03e-95 280
MS.gene050381.t1 AT1G75050 41.700 247 119 7 7 236 5 243 1.67e-53 172
MS.gene050381.t1 AT1G75040 42.213 244 118 7 7 236 5 239 4.62e-53 171
MS.gene050381.t1 AT1G75800 41.767 249 114 8 11 236 8 248 7.80e-53 174
MS.gene050381.t1 AT1G75030 40.081 247 123 7 7 236 5 243 1.18e-52 171
MS.gene050381.t1 AT4G38670 39.370 254 125 9 5 236 1 247 1.55e-50 166
MS.gene050381.t1 AT4G38670 39.370 254 125 9 5 236 1 247 1.55e-50 166
MS.gene050381.t1 AT2G17860 41.897 253 115 9 8 236 5 249 7.45e-50 164
MS.gene050381.t1 AT1G19320 39.764 254 126 8 1 235 1 246 1.08e-49 163
MS.gene050381.t1 AT1G77700 41.841 239 116 8 9 235 44 271 1.50e-49 165
MS.gene050381.t1 AT1G77700 41.841 239 116 8 9 235 44 271 1.88e-49 165
MS.gene050381.t1 AT4G36010 44.444 234 97 9 28 236 25 250 1.10e-48 162
MS.gene050381.t1 AT4G36010 44.444 234 97 9 28 236 25 250 1.10e-48 162
MS.gene050381.t1 AT4G38660 40.244 246 120 10 5 236 13 245 3.13e-48 162
MS.gene050381.t1 AT4G38670 40.756 238 113 8 20 236 1 231 6.43e-48 159
MS.gene050381.t1 AT1G77700 42.478 226 107 8 22 235 85 299 6.93e-48 161
MS.gene050381.t1 AT4G38660 42.601 223 105 9 28 236 10 223 1.07e-47 160
MS.gene050381.t1 AT1G20030 40.260 231 109 7 28 236 5 228 1.10e-47 159
MS.gene050381.t1 AT1G20030 40.260 231 109 7 28 236 22 245 1.37e-47 159
MS.gene050381.t1 AT5G24620 38.095 252 123 9 9 236 9 251 4.00e-46 158
MS.gene050381.t1 AT5G24620 38.095 252 123 9 9 236 85 327 5.78e-46 159
MS.gene050381.t1 AT5G24620 38.095 252 123 9 9 236 64 306 6.32e-46 159
MS.gene050381.t1 AT5G38280 37.097 248 127 7 11 236 10 250 1.20e-45 161
MS.gene050381.t1 AT5G38280 37.097 248 127 7 11 236 10 250 1.45e-45 161
MS.gene050381.t1 AT1G73620 38.362 232 115 8 23 236 39 260 1.00e-42 145
MS.gene050381.t1 AT1G18250 37.931 232 118 7 22 236 18 240 1.73e-42 144
MS.gene050381.t1 AT1G18250 38.095 231 117 7 23 236 18 239 1.85e-42 144
MS.gene050381.t1 AT4G24180 34.601 263 126 11 4 236 5 251 5.83e-42 143
MS.gene050381.t1 AT4G24180 35.827 254 118 10 12 236 19 256 7.90e-42 143
MS.gene050381.t1 AT4G24180 34.601 263 126 11 4 236 5 251 1.37e-41 144
MS.gene050381.t1 AT4G24180 35.827 254 118 10 12 236 19 256 2.39e-41 143
MS.gene050381.t1 AT5G02140 36.000 250 133 10 5 236 1 241 1.47e-40 139
MS.gene050381.t1 AT5G02140 36.000 250 133 10 5 236 1 241 1.62e-40 140
MS.gene050381.t1 AT4G24180 33.198 247 120 10 4 220 5 236 6.47e-36 129
MS.gene050381.t1 AT4G24180 34.454 238 112 9 12 220 19 241 8.31e-36 129
MS.gene050381.t1 AT5G40020 33.921 227 124 8 28 236 30 248 1.08e-34 124
MS.gene050381.t1 AT1G70250 33.778 225 129 6 28 236 147 367 6.88e-33 126
MS.gene050381.t1 AT2G28790 31.373 255 145 8 4 235 1 248 7.12e-33 120
MS.gene050381.t1 AT2G28790 31.373 255 145 8 4 235 26 273 1.08e-32 120
MS.gene050381.t1 AT4G36000 44.521 146 70 5 94 236 1 138 3.63e-32 117
MS.gene050381.t1 AT4G36000 44.521 146 70 5 94 236 1 138 3.63e-32 117
MS.gene050381.t1 AT4G18253 31.967 244 131 9 10 236 13 238 3.88e-29 110
MS.gene050381.t1 AT4G18250 34.545 220 123 7 30 236 61 272 3.24e-24 100
MS.gene050381.t1 AT5G24620 38.583 127 57 4 124 236 15 134 6.88e-18 81.3
MS.gene050381.t1 AT2G24810 25.926 243 121 8 1 235 1 192 3.15e-14 69.3

Find 62 sgRNAs with CRISPR-Local

Find 64 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTTATTCTAAGTTCTTTA+AGG 0.109038 5.2:-3777865 MS.gene050381:CDS
GTGCTGGTTGCATCATCTTT+AGG 0.231896 5.2:+3777816 None:intergenic
TGCTGGTTGCATCATCTTTA+GGG 0.281050 5.2:+3777817 None:intergenic
GTACAAGTAACGCAAGAATC+TGG 0.345424 5.2:-3778268 MS.gene050381:CDS
AATTGTACTGCCGATATTAA+CGG 0.362766 5.2:-3778023 MS.gene050381:CDS
TCCTGCTTGTGCTGCAGCTA+TGG 0.386772 5.2:+3778400 None:intergenic
AATTGCACTTTCGACAATTC+AGG 0.390196 5.2:-3778236 MS.gene050381:CDS
TGCTGCAGCTATGGATGTTA+TGG 0.396488 5.2:+3778409 None:intergenic
CATCCACCTGGTACCTTAAG+TGG 0.408658 5.2:+3777987 None:intergenic
AAGAACTTAGAATAAGTTGT+TGG 0.409578 5.2:+3777870 None:intergenic
GCAAATTCCATGATTGTGTT+TGG 0.415246 5.2:+3778149 None:intergenic
TTAGGGTAACTATAAGCATA+AGG 0.421618 5.2:+3777834 None:intergenic
ACACTAGAGTGTCAAACAAT+AGG 0.437709 5.2:-3778179 MS.gene050381:CDS
TGAATTGTCGAAAGTGCAAT+TGG 0.451662 5.2:+3778238 None:intergenic
TTGAGTTTCATGCCACCGCC+GGG 0.462414 5.2:+3778326 None:intergenic
GCCACCGCCGGGGAAGGCTG+CGG 0.464024 5.2:+3778337 None:intergenic
GTTGAGTTTCATGCCACCGC+CGG 0.464550 5.2:+3778325 None:intergenic
GCCGCAGCCTTCCCCGGCGG+TGG 0.465884 5.2:-3778338 MS.gene050381:CDS
ACTTTCGACAATTCAGGTCT+CGG 0.467109 5.2:-3778230 MS.gene050381:CDS
ATTCTAAGTTCTTTAAGGAT+AGG 0.468720 5.2:-3777860 MS.gene050381:CDS
TTTCATGCCACCGCCGGGGA+AGG 0.472855 5.2:+3778331 None:intergenic
AGGACACTCTCCGTTAATAT+CGG 0.474742 5.2:+3778013 None:intergenic
ACAAATGCAACTACACCGTA+TGG 0.475606 5.2:-3778361 MS.gene050381:CDS
TCTTGCGTTACTTGTACCAT+TGG 0.482280 5.2:+3778274 None:intergenic
TACAAGTAACGCAAGAATCT+GGG 0.482336 5.2:-3778267 MS.gene050381:CDS
AACTCAACACAGGTGAATCA+TGG 0.485867 5.2:-3778310 MS.gene050381:CDS
GGGGAAGGCTGCGGCCCATA+CGG 0.488521 5.2:+3778346 None:intergenic
GCGAAACATCATAGAAATCA+AGG 0.493251 5.2:+3778108 None:intergenic
TACACCACCAAACACAATCA+TGG 0.514809 5.2:-3778156 MS.gene050381:CDS
TATGATGTTTCGCTTGTACA+AGG 0.516071 5.2:-3778098 MS.gene050381:CDS
AACCAGCACATTCTCTTGTA+CGG 0.516261 5.2:-3777802 MS.gene050381:CDS
GTATGGGCCGCAGCCTTCCC+CGG 0.524947 5.2:-3778344 MS.gene050381:CDS
ACCACACGTGGCAGAGGCAT+TGG 0.525682 5.2:+3777893 None:intergenic
AAACCGTCTTTAAATTCTTG+TGG 0.529244 5.2:-3778053 MS.gene050381:CDS
GGTCTCGGAAAGTGTCAAAC+CGG 0.530011 5.2:-3778215 MS.gene050381:CDS
TAGTGTTCCGTTACAATCAC+CGG 0.530720 5.2:+3778196 None:intergenic
AATATCGGCAGTACAATTAA+CGG 0.535596 5.2:+3778028 None:intergenic
ACCAGCACATTCTCTTGTAC+GGG 0.539521 5.2:-3777801 MS.gene050381:CDS
AATTCCATGATTGTGTTTGG+TGG 0.543379 5.2:+3778152 None:intergenic
TAGGGTAACTATAAGCATAA+GGG 0.543431 5.2:+3777835 None:intergenic
AGAGTGTCCTACTCCACTTA+AGG 0.543641 5.2:-3778000 MS.gene050381:CDS
TCCATAGCTGCAGCACAAGC+AGG 0.551144 5.2:-3778401 MS.gene050381:CDS
CCTACTCCACTTAAGGTACC+AGG 0.555994 5.2:-3777993 MS.gene050381:CDS
TGTTGGACCACACGTGGCAG+AGG 0.556682 5.2:+3777887 None:intergenic
GTTGTATCAAACGTAGTACA+AGG 0.567408 5.2:+3777957 None:intergenic
ACCAATGCCTCTGCCACGTG+TGG 0.578890 5.2:-3777894 MS.gene050381:CDS
CCTGGTACCTTAAGTGGAGT+AGG 0.586418 5.2:+3777993 None:intergenic
GTACCACAAGAATTTAAAGA+CGG 0.598224 5.2:+3778050 None:intergenic
TCCCGTACAAGAGAATGTGC+TGG 0.600307 5.2:+3777800 None:intergenic
CAAGGATTGTTACATCCACC+TGG 0.601793 5.2:+3777975 None:intergenic
CAAATGCAACTACACCGTAT+GGG 0.615897 5.2:-3778360 MS.gene050381:CDS
TGTCAAACCGGTGATTGTAA+CGG 0.616265 5.2:-3778203 MS.gene050381:CDS
TGGAACATGAACATAACCAA+TGG 0.633971 5.2:-3778290 MS.gene050381:CDS
TGGATGTTATGGCTATGAGA+AGG 0.634571 5.2:+3778420 None:intergenic
AGCACATTCTCTTGTACGGG+AGG 0.640577 5.2:-3777798 MS.gene050381:CDS
CTATGAGAAGGAAGACTGAG+AGG 0.649774 5.2:+3778432 None:intergenic
ATAAGTTGTTGGACCACACG+TGG 0.652976 5.2:+3777881 None:intergenic
ACAAGTAACGCAAGAATCTG+GGG 0.665144 5.2:-3778266 MS.gene050381:CDS
TGAGTTTCATGCCACCGCCG+GGG 0.679603 5.2:+3778327 None:intergenic
TGGGCCGCAGCCTTCCCCGG+CGG 0.703292 5.2:-3778341 MS.gene050381:CDS
GGTGGCATGAAACTCAACAC+AGG 0.727771 5.2:-3778320 MS.gene050381:CDS
ACTCCACTTAAGGTACCAGG+TGG 0.750912 5.2:-3777990 MS.gene050381:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACTTATTCTAAGTTCTTTA+AGG - chr5.2:3778357-3778376 MS.gene050381:CDS 20.0%
! AAGAACTTAGAATAAGTTGT+TGG + chr5.2:3778355-3778374 None:intergenic 25.0%
!! ATTCTAAGTTCTTTAAGGAT+AGG - chr5.2:3778362-3778381 MS.gene050381:CDS 25.0%
AAACCGTCTTTAAATTCTTG+TGG - chr5.2:3778169-3778188 MS.gene050381:CDS 30.0%
AATATCGGCAGTACAATTAA+CGG + chr5.2:3778197-3778216 None:intergenic 30.0%
AATTGTACTGCCGATATTAA+CGG - chr5.2:3778199-3778218 MS.gene050381:CDS 30.0%
GTACCACAAGAATTTAAAGA+CGG + chr5.2:3778175-3778194 None:intergenic 30.0%
TAGGGTAACTATAAGCATAA+GGG + chr5.2:3778390-3778409 None:intergenic 30.0%
TTAGGGTAACTATAAGCATA+AGG + chr5.2:3778391-3778410 None:intergenic 30.0%
!! AAAGACGGTTTTAACAGAAT+TGG + chr5.2:3778160-3778179 None:intergenic 30.0%
AATTCCATGATTGTGTTTGG+TGG + chr5.2:3778073-3778092 None:intergenic 35.0%
AATTGCACTTTCGACAATTC+AGG - chr5.2:3777986-3778005 MS.gene050381:CDS 35.0%
GCAAATTCCATGATTGTGTT+TGG + chr5.2:3778076-3778095 None:intergenic 35.0%
GCGAAACATCATAGAAATCA+AGG + chr5.2:3778117-3778136 None:intergenic 35.0%
GTTGTATCAAACGTAGTACA+AGG + chr5.2:3778268-3778287 None:intergenic 35.0%
TACAAGTAACGCAAGAATCT+GGG - chr5.2:3777955-3777974 MS.gene050381:CDS 35.0%
TATGATGTTTCGCTTGTACA+AGG - chr5.2:3778124-3778143 MS.gene050381:CDS 35.0%
TGGAACATGAACATAACCAA+TGG - chr5.2:3777932-3777951 MS.gene050381:CDS 35.0%
! ACACTAGAGTGTCAAACAAT+AGG - chr5.2:3778043-3778062 MS.gene050381:CDS 35.0%
! TGAATTGTCGAAAGTGCAAT+TGG + chr5.2:3777987-3778006 None:intergenic 35.0%
!! GAGGTTTGTTTTCATGATGA+TGG + chr5.2:3777774-3777793 None:intergenic 35.0%
AACCAGCACATTCTCTTGTA+CGG - chr5.2:3778420-3778439 MS.gene050381:CDS 40.0%
AACTCAACACAGGTGAATCA+TGG - chr5.2:3777912-3777931 MS.gene050381:CDS 40.0%
ACAAATGCAACTACACCGTA+TGG - chr5.2:3777861-3777880 MS.gene050381:CDS 40.0%
ACAAGTAACGCAAGAATCTG+GGG - chr5.2:3777956-3777975 MS.gene050381:CDS 40.0%
ACTTTCGACAATTCAGGTCT+CGG - chr5.2:3777992-3778011 MS.gene050381:CDS 40.0%
AGGACACTCTCCGTTAATAT+CGG + chr5.2:3778212-3778231 None:intergenic 40.0%
CAAATGCAACTACACCGTAT+GGG - chr5.2:3777862-3777881 MS.gene050381:CDS 40.0%
GTACAAGTAACGCAAGAATC+TGG - chr5.2:3777954-3777973 MS.gene050381:CDS 40.0%
TACACCACCAAACACAATCA+TGG - chr5.2:3778066-3778085 MS.gene050381:CDS 40.0%
TAGTGTTCCGTTACAATCAC+CGG + chr5.2:3778029-3778048 None:intergenic 40.0%
TCTTGCGTTACTTGTACCAT+TGG + chr5.2:3777951-3777970 None:intergenic 40.0%
TGGATGTTATGGCTATGAGA+AGG + chr5.2:3777805-3777824 None:intergenic 40.0%
TGTCAAACCGGTGATTGTAA+CGG - chr5.2:3778019-3778038 MS.gene050381:CDS 40.0%
! TGCTGGTTGCATCATCTTTA+GGG + chr5.2:3778408-3778427 None:intergenic 40.0%
ACCAGCACATTCTCTTGTAC+GGG - chr5.2:3778421-3778440 MS.gene050381:CDS 45.0%
ATAAGTTGTTGGACCACACG+TGG + chr5.2:3778344-3778363 None:intergenic 45.0%
CAAGGATTGTTACATCCACC+TGG + chr5.2:3778250-3778269 None:intergenic 45.0%
CTATGAGAAGGAAGACTGAG+AGG + chr5.2:3777793-3777812 None:intergenic 45.0%
TGCTGCAGCTATGGATGTTA+TGG + chr5.2:3777816-3777835 None:intergenic 45.0%
! AGAGTGTCCTACTCCACTTA+AGG - chr5.2:3778222-3778241 MS.gene050381:CDS 45.0%
!! GTGCTGGTTGCATCATCTTT+AGG + chr5.2:3778409-3778428 None:intergenic 45.0%
AGCACATTCTCTTGTACGGG+AGG - chr5.2:3778424-3778443 MS.gene050381:CDS 50.0%
CATCCACCTGGTACCTTAAG+TGG + chr5.2:3778238-3778257 None:intergenic 50.0%
CCTGGTACCTTAAGTGGAGT+AGG + chr5.2:3778232-3778251 None:intergenic 50.0%
GGTGGCATGAAACTCAACAC+AGG - chr5.2:3777902-3777921 MS.gene050381:CDS 50.0%
TCCCGTACAAGAGAATGTGC+TGG + chr5.2:3778425-3778444 None:intergenic 50.0%
! ACTCCACTTAAGGTACCAGG+TGG - chr5.2:3778232-3778251 MS.gene050381:CDS 50.0%
! CCTACTCCACTTAAGGTACC+AGG - chr5.2:3778229-3778248 MS.gene050381:CDS 50.0%
!! GGTCTCGGAAAGTGTCAAAC+CGG - chr5.2:3778007-3778026 MS.gene050381:CDS 50.0%
GTTGAGTTTCATGCCACCGC+CGG + chr5.2:3777900-3777919 None:intergenic 55.0%
TCCATAGCTGCAGCACAAGC+AGG - chr5.2:3777821-3777840 MS.gene050381:CDS 55.0%
TCCTGCTTGTGCTGCAGCTA+TGG + chr5.2:3777825-3777844 None:intergenic 55.0%
TTGAGTTTCATGCCACCGCC+GGG + chr5.2:3777899-3777918 None:intergenic 55.0%
ACCAATGCCTCTGCCACGTG+TGG - chr5.2:3778328-3778347 MS.gene050381:CDS 60.0%
TGAGTTTCATGCCACCGCCG+GGG + chr5.2:3777898-3777917 None:intergenic 60.0%
TGTTGGACCACACGTGGCAG+AGG + chr5.2:3778338-3778357 None:intergenic 60.0%
! ACCACACGTGGCAGAGGCAT+TGG + chr5.2:3778332-3778351 None:intergenic 60.0%
TTTCATGCCACCGCCGGGGA+AGG + chr5.2:3777894-3777913 None:intergenic 65.0%
GGGGAAGGCTGCGGCCCATA+CGG + chr5.2:3777879-3777898 None:intergenic 70.0%
GTATGGGCCGCAGCCTTCCC+CGG - chr5.2:3777878-3777897 MS.gene050381:CDS 70.0%
! GCCACCGCCGGGGAAGGCTG+CGG + chr5.2:3777888-3777907 None:intergenic 80.0%
! TGGGCCGCAGCCTTCCCCGG+CGG - chr5.2:3777881-3777900 MS.gene050381:CDS 80.0%
! GCCGCAGCCTTCCCCGGCGG+TGG - chr5.2:3777884-3777903 MS.gene050381:CDS 85.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 3777767 3778477 3777767 ID=MS.gene050381
chr5.2 mRNA 3777767 3778477 3777767 ID=MS.gene050381.t1;Parent=MS.gene050381
chr5.2 exon 3777767 3778477 3777767 ID=MS.gene050381.t1.exon1;Parent=MS.gene050381.t1
chr5.2 CDS 3777767 3778477 3777767 ID=cds.MS.gene050381.t1;Parent=MS.gene050381.t1
Gene Sequence

>MS.gene050381

ATGGCCATCATCATGAAAACAAACCTCTCAGTCTTCCTTCTCATAGCCATAACATCCATAGCTGCAGCACAAGCAGGAAGATTCAATATCACAAACAAATGCAACTACACCGTATGGGCCGCAGCCTTCCCCGGCGGTGGCATGAAACTCAACACAGGTGAATCATGGAACATGAACATAACCAATGGTACAAGTAACGCAAGAATCTGGGGTCGAACCAATTGCACTTTCGACAATTCAGGTCTCGGAAAGTGTCAAACCGGTGATTGTAACGGAACACTAGAGTGTCAAACAATAGGTACACCACCAAACACAATCATGGAATTTGCTTTGAACATGTACAACGACCTTGATTTCTATGATGTTTCGCTTGTACAAGGTTTCAATATTCCAATTCTGTTAAAACCGTCTTTAAATTCTTGTGGTACCGTTAATTGTACTGCCGATATTAACGGAGAGTGTCCTACTCCACTTAAGGTACCAGGTGGATGTAACAATCCTTGTACTACGTTTGATACAACTGAATATTGTTGCAACTCTGATTCTGCTAGATCTGCAGCTACCAATGCCTCTGCCACGTGTGGTCCAACAACTTATTCTAAGTTCTTTAAGGATAGGTGCCCTTATGCTTATAGTTACCCTAAAGATGATGCAACCAGCACATTCTCTTGTACGGGAGGAACAACTTATGATGTTGTCTTTTGTCCTTAA

Protein sequence

>MS.gene050381.t1

MAIIMKTNLSVFLLIAITSIAAAQAGRFNITNKCNYTVWAAAFPGGGMKLNTGESWNMNITNGTSNARIWGRTNCTFDNSGLGKCQTGDCNGTLECQTIGTPPNTIMEFALNMYNDLDFYDVSLVQGFNIPILLKPSLNSCGTVNCTADINGECPTPLKVPGGCNNPCTTFDTTEYCCNSDSARSAATNASATCGPTTYSKFFKDRCPYAYSYPKDDATSTFSCTGGTTYDVVFCP