Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063157.t1 | XP_003603941.1 | 95.5 | 312 | 14 | 0 | 1 | 312 | 1 | 312 | 5.40E-166 | 593.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063157.t1 | B9HRL7 | 79.4 | 306 | 63 | 0 | 7 | 312 | 1 | 306 | 3.3e-140 | 499.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063157.t1 | G7J743 | 95.5 | 312 | 14 | 0 | 1 | 312 | 1 | 312 | 3.9e-166 | 593.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene039472 | MS.gene063157 | PPI |
| MS.gene23274 | MS.gene063157 | PPI |
| MS.gene063157 | MS.gene003737 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063157.t1 | MTR_3g116840 | 95.513 | 312 | 14 | 0 | 1 | 312 | 1 | 312 | 0.0 | 616 |
| MS.gene063157.t1 | MTR_3g111980 | 72.222 | 306 | 83 | 1 | 9 | 312 | 5 | 310 | 1.74e-165 | 462 |
| MS.gene063157.t1 | MTR_3g111990 | 69.079 | 304 | 94 | 0 | 9 | 312 | 5 | 308 | 9.23e-161 | 450 |
| MS.gene063157.t1 | MTR_5g020740 | 68.750 | 304 | 95 | 0 | 9 | 312 | 6 | 309 | 5.12e-157 | 441 |
| MS.gene063157.t1 | MTR_4g070370 | 66.225 | 302 | 102 | 0 | 9 | 310 | 8 | 309 | 7.35e-151 | 426 |
| MS.gene063157.t1 | MTR_4g070340 | 61.935 | 310 | 116 | 1 | 1 | 310 | 1 | 308 | 6.98e-144 | 409 |
| MS.gene063157.t1 | MTR_4g070340 | 60.968 | 310 | 114 | 2 | 1 | 310 | 1 | 303 | 1.36e-138 | 395 |
| MS.gene063157.t1 | MTR_5g020760 | 55.556 | 315 | 128 | 3 | 9 | 312 | 5 | 318 | 4.63e-119 | 345 |
| MS.gene063157.t1 | MTR_5g020800 | 55.238 | 315 | 129 | 3 | 9 | 312 | 5 | 318 | 1.19e-118 | 344 |
| MS.gene063157.t1 | MTR_4g070340 | 61.224 | 245 | 95 | 0 | 66 | 310 | 15 | 259 | 4.92e-113 | 328 |
| MS.gene063157.t1 | MTR_4g070360 | 50.327 | 306 | 150 | 1 | 9 | 312 | 4 | 309 | 3.94e-107 | 315 |
| MS.gene063157.t1 | MTR_5g020760 | 55.000 | 260 | 106 | 2 | 9 | 257 | 5 | 264 | 2.64e-96 | 285 |
| MS.gene063157.t1 | MTR_5g027290 | 47.896 | 309 | 153 | 4 | 9 | 311 | 4 | 310 | 5.95e-95 | 283 |
| MS.gene063157.t1 | MTR_8g071130 | 47.419 | 310 | 156 | 4 | 9 | 312 | 4 | 312 | 2.53e-94 | 282 |
| MS.gene063157.t1 | MTR_5g027240 | 47.896 | 309 | 153 | 4 | 9 | 311 | 4 | 310 | 1.17e-93 | 280 |
| MS.gene063157.t1 | MTR_3g008100 | 42.208 | 308 | 166 | 5 | 9 | 312 | 6 | 305 | 3.75e-83 | 254 |
| MS.gene063157.t1 | MTR_3g008140 | 43.607 | 305 | 165 | 5 | 9 | 312 | 6 | 304 | 1.02e-82 | 253 |
| MS.gene063157.t1 | MTR_3g007970 | 41.967 | 305 | 171 | 4 | 9 | 312 | 6 | 305 | 5.89e-81 | 248 |
| MS.gene063157.t1 | MTR_3g008100 | 41.234 | 308 | 162 | 5 | 9 | 312 | 6 | 298 | 2.96e-79 | 243 |
| MS.gene063157.t1 | MTR_1g093720 | 37.377 | 305 | 188 | 2 | 10 | 312 | 15 | 318 | 4.08e-68 | 216 |
| MS.gene063157.t1 | MTR_3g008100 | 40.099 | 202 | 109 | 5 | 9 | 206 | 6 | 199 | 2.19e-40 | 141 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063157.t1 | AT4G39230 | 76.316 | 304 | 72 | 0 | 9 | 312 | 5 | 308 | 7.07e-177 | 491 |
| MS.gene063157.t1 | AT1G75280 | 68.525 | 305 | 93 | 2 | 9 | 311 | 6 | 309 | 3.88e-152 | 429 |
| MS.gene063157.t1 | AT1G75290 | 66.230 | 305 | 101 | 1 | 9 | 311 | 6 | 310 | 9.85e-150 | 423 |
| MS.gene063157.t1 | AT1G75290 | 66.230 | 305 | 101 | 1 | 9 | 311 | 33 | 337 | 5.78e-149 | 422 |
| MS.gene063157.t1 | AT1G75300 | 60.502 | 319 | 107 | 2 | 9 | 311 | 6 | 321 | 4.16e-137 | 391 |
| MS.gene063157.t1 | AT1G19540 | 60.000 | 310 | 120 | 2 | 7 | 312 | 1 | 310 | 1.79e-134 | 384 |
| MS.gene063157.t1 | AT1G19540 | 60.784 | 255 | 96 | 2 | 7 | 257 | 1 | 255 | 8.63e-106 | 309 |
| MS.gene063157.t1 | AT4G34540 | 48.684 | 304 | 151 | 1 | 9 | 312 | 8 | 306 | 8.85e-103 | 303 |
| MS.gene063157.t1 | AT1G32100 | 44.194 | 310 | 165 | 4 | 9 | 312 | 10 | 317 | 4.29e-83 | 254 |
| MS.gene063157.t1 | AT4G13660 | 44.194 | 310 | 165 | 4 | 9 | 312 | 10 | 317 | 3.15e-81 | 249 |
| MS.gene063157.t1 | AT4G13660 | 44.194 | 310 | 165 | 4 | 9 | 312 | 10 | 317 | 3.15e-81 | 249 |
Find 70 sgRNAs with CRISPR-Local
Find 101 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCAATGCTGCGCCGAATTC+TGG | 0.146721 | 3.4:-99401054 | None:intergenic |
| GCTCACTGTGTGTACATAAA+AGG | 0.206083 | 3.4:+99401699 | MS.gene063157:CDS |
| AATCTCAGACAAATTGATTA+AGG | 0.266824 | 3.4:-99401812 | None:intergenic |
| TCAATGATCTCGTATCTCTA+TGG | 0.304426 | 3.4:+99401410 | MS.gene063157:CDS |
| ATAGACAGCATCATATTTAA+TGG | 0.305042 | 3.4:-99401675 | None:intergenic |
| TTTGAAATTGATCCAACATT+TGG | 0.320418 | 3.4:+99401735 | MS.gene063157:CDS |
| AGATTCTTTCCTTCTGAATT+CGG | 0.325326 | 3.4:+99400972 | MS.gene063157:CDS |
| ACGGCATATGCACTCTTTGC+CGG | 0.335113 | 3.4:-99401026 | None:intergenic |
| ATCCTTGAATTTGTTGATGA+TGG | 0.347770 | 3.4:-99400413 | None:intergenic |
| AACATTTCCAGCTTCTTTGA+TGG | 0.352360 | 3.4:-99400796 | None:intergenic |
| TGCTTCAGAAGTTGTTCCTC+TGG | 0.362678 | 3.4:-99401472 | None:intergenic |
| GTGTCAAGCAACTACTTTGC+TGG | 0.363642 | 3.4:+99401101 | MS.gene063157:CDS |
| GATCAATTTCAAAGTTAGTA+TGG | 0.379619 | 3.4:-99401725 | None:intergenic |
| CTCACTGTGTGTACATAAAA+GGG | 0.386311 | 3.4:+99401700 | MS.gene063157:CDS |
| TCTATATGATCATCAAAGTT+TGG | 0.394266 | 3.4:+99400692 | MS.gene063157:CDS |
| CAAAGAAGCTGGAAATGTTA+AGG | 0.420593 | 3.4:+99400800 | MS.gene063157:CDS |
| CGGTTACATCGGAAAGTTCA+TGG | 0.428326 | 3.4:+99400312 | MS.gene063157:CDS |
| AGGATAACAACTTTATCTCT+TGG | 0.434576 | 3.4:-99401167 | None:intergenic |
| TTTGGTCAAAGCAATAAAAC+AGG | 0.436640 | 3.4:+99400710 | MS.gene063157:CDS |
| ATCCATCATCAACAAATTCA+AGG | 0.437302 | 3.4:+99400411 | MS.gene063157:CDS |
| GCGCCGAATTCTGGCTTTAA+CGG | 0.452773 | 3.4:-99401045 | None:intergenic |
| ATCTCTGCCATCAAAGAAGC+TGG | 0.461263 | 3.4:+99400789 | MS.gene063157:CDS |
| AGAGATAAAGTTGTTATCCT+AGG | 0.472690 | 3.4:+99401170 | MS.gene063157:CDS |
| ATGCCGTTAAAGCCAGAATT+CGG | 0.486275 | 3.4:+99401042 | MS.gene063157:CDS |
| CAACTTCTGAAGCAAATTCA+AGG | 0.487168 | 3.4:+99401481 | MS.gene063157:CDS |
| CAATGATCTCGTATCTCTAT+GGG | 0.490781 | 3.4:+99401411 | MS.gene063157:CDS |
| TCTCTATGGGAGAAGAAGAT+TGG | 0.494193 | 3.4:+99401424 | MS.gene063157:CDS |
| CTTTGGGGTTTCCATCTCCT+AGG | 0.498008 | 3.4:-99401187 | None:intergenic |
| ACAGTGGTGTATTTCACATC+AGG | 0.498107 | 3.4:-99401780 | None:intergenic |
| ATAACAACTTTATCTCTTGG+TGG | 0.500817 | 3.4:-99401164 | None:intergenic |
| ACGTACAACAAGAAGATTGA+CGG | 0.501310 | 3.4:-99400440 | None:intergenic |
| GATGGATGATTTAGCAGGGT+TGG | 0.503796 | 3.4:-99400395 | None:intergenic |
| TTGCTTGACACATAAGTGTA+TGG | 0.510841 | 3.4:-99401089 | None:intergenic |
| TTGATGATGGATGATTTAGC+AGG | 0.525812 | 3.4:-99400400 | None:intergenic |
| GAGTTGAGTCTCGGATGAGA+AGG | 0.525951 | 3.4:-99400369 | None:intergenic |
| AGCTCCATGCTGTGATAAAG+AGG | 0.527862 | 3.4:-99401135 | None:intergenic |
| AAAGTTGTTATCCTAGGAGA+TGG | 0.536929 | 3.4:+99401176 | MS.gene063157:CDS |
| GTAGCTTCTACTCCAAATGT+TGG | 0.537034 | 3.4:-99401747 | None:intergenic |
| TTCTGAATTCGGAAATGATG+TGG | 0.539147 | 3.4:+99400983 | MS.gene063157:CDS |
| TCTCGGATGAGAAGGAAGGT+TGG | 0.539639 | 3.4:-99400361 | None:intergenic |
| ATCGGTGGCAGCGGTTACAT+CGG | 0.540698 | 3.4:+99400301 | MS.gene063157:CDS |
| TCAGAGTCATGCAGTTGAGC+CGG | 0.544509 | 3.4:+99401007 | MS.gene063157:CDS |
| GTGGAAGCTAGCGTCAAAGC+TGG | 0.545923 | 3.4:+99400334 | MS.gene063157:CDS |
| CAGAATTCGGCGCAGCATTG+AGG | 0.550163 | 3.4:+99401055 | MS.gene063157:CDS |
| ATTCTATTGATCGGTGGCAG+CGG | 0.557982 | 3.4:+99400292 | MS.gene063157:CDS |
| ACATCATTTCCGAATTCAGA+AGG | 0.559910 | 3.4:-99400981 | None:intergenic |
| CTACCCTCTTTATCACAGCA+TGG | 0.560618 | 3.4:+99401131 | MS.gene063157:CDS |
| TTGAAAGACAAGGCATTACC+TGG | 0.560825 | 3.4:-99401391 | None:intergenic |
| TTTAAATTGCAATGGCAGGT+GGG | 0.575232 | 3.4:+99400251 | None:intergenic |
| CGGCGCAGCATTGAGGCGGA+AGG | 0.585294 | 3.4:+99401062 | MS.gene063157:CDS |
| GGATGAGAAGGAAGGTTGGA+TGG | 0.597335 | 3.4:-99400357 | None:intergenic |
| TGATGATGGATGATTTAGCA+GGG | 0.603826 | 3.4:-99400399 | None:intergenic |
| ATGAGCAAGATTCTATTGAT+CGG | 0.608506 | 3.4:+99400283 | MS.gene063157:CDS |
| ATTCTGTATATTAGACCACC+AGG | 0.614061 | 3.4:+99401373 | MS.gene063157:CDS |
| GGTTGGAAAGAGTTGAGTCT+CGG | 0.615631 | 3.4:-99400378 | None:intergenic |
| AATTCGGCGCAGCATTGAGG+CGG | 0.625381 | 3.4:+99401058 | MS.gene063157:CDS |
| TGAAAGAATCTATGTTCCAG+AGG | 0.633249 | 3.4:+99401456 | MS.gene063157:CDS |
| GACAGCATCATATTTAATGG+AGG | 0.637215 | 3.4:-99401672 | None:intergenic |
| TGAGTCTCGGATGAGAAGGA+AGG | 0.639125 | 3.4:-99400365 | None:intergenic |
| CATCATATTTAATGGAGGCG+AGG | 0.648947 | 3.4:-99401667 | None:intergenic |
| GCTCCATGCTGTGATAAAGA+GGG | 0.649603 | 3.4:-99401134 | None:intergenic |
| TGATCTTGTCTTGAACACTC+AGG | 0.656329 | 3.4:-99400767 | None:intergenic |
| TACGAGATCATTGAAAGACA+AGG | 0.657957 | 3.4:-99401401 | None:intergenic |
| AGCAAGATTCTATTGATCGG+TGG | 0.659730 | 3.4:+99400286 | MS.gene063157:CDS |
| TCACTGTGTGTACATAAAAG+GGG | 0.662298 | 3.4:+99401701 | MS.gene063157:CDS |
| CATGCTGTGATAAAGAGGGT+AGG | 0.664558 | 3.4:-99401130 | None:intergenic |
| CTAGGAGATGGAAACCCCAA+AGG | 0.669328 | 3.4:+99401188 | MS.gene063157:CDS |
| ATTAAGGAACTCATCAACAG+TGG | 0.701389 | 3.4:-99401796 | None:intergenic |
| AAAGACAAGGCATTACCTGG+TGG | 0.724041 | 3.4:-99401388 | None:intergenic |
| TTACATCGGAAAGTTCATGG+TGG | 0.773819 | 3.4:+99400315 | MS.gene063157:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CAGATTAATTTTCTATTTTT+AGG | - | chr3.4:99400918-99400937 | None:intergenic | 15.0% |
| !!! | CATTAATTTTTCTTACTAAT+AGG | + | chr3.4:99401251-99401270 | MS.gene063157:intron | 15.0% |
| !!! | GTGGTTTAATAATTTAATTT+TGG | + | chr3.4:99401632-99401651 | MS.gene063157:intron | 15.0% |
| !!! | AATATACAGAATTTTGTTCA+AGG | - | chr3.4:99401365-99401384 | None:intergenic | 20.0% |
| ! | ATAGACAGCATCATATTTAA+TGG | - | chr3.4:99401678-99401697 | None:intergenic | 25.0% |
| ! | GATCAATTTCAAAGTTAGTA+TGG | - | chr3.4:99401728-99401747 | None:intergenic | 25.0% |
| ! | TACTATATATGTTACCAGAA+AGG | - | chr3.4:99400477-99400496 | None:intergenic | 25.0% |
| ! | TCTATATGATCATCAAAGTT+TGG | + | chr3.4:99400692-99400711 | MS.gene063157:CDS | 25.0% |
| !! | ATATAGTAAAGATCGATTCA+TGG | + | chr3.4:99400489-99400508 | MS.gene063157:intron | 25.0% |
| !! | TAAAGTATTATGAACAGCAA+AGG | - | chr3.4:99401518-99401537 | None:intergenic | 25.0% |
| !! | TATAGTAAAGATCGATTCAT+GGG | + | chr3.4:99400490-99400509 | MS.gene063157:intron | 25.0% |
| !! | TTAATCTTTTTATGATTCCC+AGG | + | chr3.4:99401535-99401554 | MS.gene063157:intron | 25.0% |
| !! | TTTGAAATTGATCCAACATT+TGG | + | chr3.4:99401735-99401754 | MS.gene063157:CDS | 25.0% |
| !!! | AGCAGCATTTAAGATTTTTA+AGG | - | chr3.4:99400569-99400588 | None:intergenic | 25.0% |
| AGAGATAAAGTTGTTATCCT+AGG | + | chr3.4:99401170-99401189 | MS.gene063157:CDS | 30.0% | |
| AGATTCTTTCCTTCTGAATT+CGG | + | chr3.4:99400972-99400991 | MS.gene063157:CDS | 30.0% | |
| AGGATAACAACTTTATCTCT+TGG | - | chr3.4:99401170-99401189 | None:intergenic | 30.0% | |
| ATAACAACTTTATCTCTTGG+TGG | - | chr3.4:99401167-99401186 | None:intergenic | 30.0% | |
| ATATGTTACCAGAAAGGAAT+AGG | - | chr3.4:99400471-99400490 | None:intergenic | 30.0% | |
| ATATTCAGCGTATTATATGC+AGG | + | chr3.4:99400665-99400684 | MS.gene063157:intron | 30.0% | |
| ATCCATCATCAACAAATTCA+AGG | + | chr3.4:99400411-99400430 | MS.gene063157:CDS | 30.0% | |
| ATGAGCAAGATTCTATTGAT+CGG | + | chr3.4:99400283-99400302 | MS.gene063157:CDS | 30.0% | |
| TATTCAGCGTATTATATGCA+GGG | + | chr3.4:99400666-99400685 | MS.gene063157:intron | 30.0% | |
| TTTGGTCAAAGCAATAAAAC+AGG | + | chr3.4:99400710-99400729 | MS.gene063157:CDS | 30.0% | |
| ! | AGAATTTTGTTCAAGGTTCT+TGG | - | chr3.4:99401358-99401377 | None:intergenic | 30.0% |
| ! | CATGTCAAATTTTGTGTATC+AGG | + | chr3.4:99400635-99400654 | MS.gene063157:intron | 30.0% |
| !! | ATCCTTGAATTTGTTGATGA+TGG | - | chr3.4:99400416-99400435 | None:intergenic | 30.0% |
| !!! | ATCAACAGCTGTTTTTAACA+AGG | + | chr3.4:99401291-99401310 | MS.gene063157:intron | 30.0% |
| AAAGTTGTTATCCTAGGAGA+TGG | + | chr3.4:99401176-99401195 | MS.gene063157:CDS | 35.0% | |
| AACATTTCCAGCTTCTTTGA+TGG | - | chr3.4:99400799-99400818 | None:intergenic | 35.0% | |
| ACATCATTTCCGAATTCAGA+AGG | - | chr3.4:99400984-99401003 | None:intergenic | 35.0% | |
| ACGTACAACAAGAAGATTGA+CGG | - | chr3.4:99400443-99400462 | None:intergenic | 35.0% | |
| ATTAAGGAACTCATCAACAG+TGG | - | chr3.4:99401799-99401818 | None:intergenic | 35.0% | |
| ATTCAGCGTATTATATGCAG+GGG | + | chr3.4:99400667-99400686 | MS.gene063157:intron | 35.0% | |
| ATTCTGTATATTAGACCACC+AGG | + | chr3.4:99401373-99401392 | MS.gene063157:CDS | 35.0% | |
| CAAAGAAGCTGGAAATGTTA+AGG | + | chr3.4:99400800-99400819 | MS.gene063157:CDS | 35.0% | |
| CAATGATCTCGTATCTCTAT+GGG | + | chr3.4:99401411-99401430 | MS.gene063157:CDS | 35.0% | |
| CTCACTGTGTGTACATAAAA+GGG | + | chr3.4:99401700-99401719 | MS.gene063157:CDS | 35.0% | |
| GACAGCATCATATTTAATGG+AGG | - | chr3.4:99401675-99401694 | None:intergenic | 35.0% | |
| TACGAGATCATTGAAAGACA+AGG | - | chr3.4:99401404-99401423 | None:intergenic | 35.0% | |
| TCAATGATCTCGTATCTCTA+TGG | + | chr3.4:99401410-99401429 | MS.gene063157:CDS | 35.0% | |
| TCACTGTGTGTACATAAAAG+GGG | + | chr3.4:99401701-99401720 | MS.gene063157:CDS | 35.0% | |
| TGAAAGAATCTATGTTCCAG+AGG | + | chr3.4:99401456-99401475 | MS.gene063157:CDS | 35.0% | |
| TTCTGAATTCGGAAATGATG+TGG | + | chr3.4:99400983-99401002 | MS.gene063157:CDS | 35.0% | |
| TTGCTTGACACATAAGTGTA+TGG | - | chr3.4:99401092-99401111 | None:intergenic | 35.0% | |
| !! | CAACTTCTGAAGCAAATTCA+AGG | + | chr3.4:99401481-99401500 | MS.gene063157:CDS | 35.0% |
| !! | TGATGATGGATGATTTAGCA+GGG | - | chr3.4:99400402-99400421 | None:intergenic | 35.0% |
| !! | TTGATGATGGATGATTTAGC+AGG | - | chr3.4:99400403-99400422 | None:intergenic | 35.0% |
| !!! | AGCTGTTTTTAACAAGGAAG+AGG | + | chr3.4:99401297-99401316 | MS.gene063157:intron | 35.0% |
| !!! | GTGTCTAGTTTTACACCTTT+GGG | - | chr3.4:99401206-99401225 | None:intergenic | 35.0% |
| !!! | TGTCTAGTTTTACACCTTTG+GGG | - | chr3.4:99401205-99401224 | None:intergenic | 35.0% |
| !!! | TGTGTCTAGTTTTACACCTT+TGG | - | chr3.4:99401207-99401226 | None:intergenic | 35.0% |
| ACAGTGGTGTATTTCACATC+AGG | - | chr3.4:99401783-99401802 | None:intergenic | 40.0% | |
| AGCAAGATTCTATTGATCGG+TGG | + | chr3.4:99400286-99400305 | MS.gene063157:CDS | 40.0% | |
| ATGCCGTTAAAGCCAGAATT+CGG | + | chr3.4:99401042-99401061 | MS.gene063157:CDS | 40.0% | |
| CATCATATTTAATGGAGGCG+AGG | - | chr3.4:99401670-99401689 | None:intergenic | 40.0% | |
| CGTCAAATCCTATTCCTTTC+TGG | + | chr3.4:99400460-99400479 | MS.gene063157:intron | 40.0% | |
| GCTCACTGTGTGTACATAAA+AGG | + | chr3.4:99401699-99401718 | MS.gene063157:CDS | 40.0% | |
| GTAGCTTCTACTCCAAATGT+TGG | - | chr3.4:99401750-99401769 | None:intergenic | 40.0% | |
| TAAACCACTGAGTCTAACAC+AGG | - | chr3.4:99401620-99401639 | None:intergenic | 40.0% | |
| TCTCTATGGGAGAAGAAGAT+TGG | + | chr3.4:99401424-99401443 | MS.gene063157:CDS | 40.0% | |
| TGATCTTGTCTTGAACACTC+AGG | - | chr3.4:99400770-99400789 | None:intergenic | 40.0% | |
| TGTGTGTGTTGTAAATCTCG+TGG | - | chr3.4:99401575-99401594 | None:intergenic | 40.0% | |
| TTACATCGGAAAGTTCATGG+TGG | + | chr3.4:99400315-99400334 | MS.gene063157:CDS | 40.0% | |
| TTCAGCGTATTATATGCAGG+GGG | + | chr3.4:99400668-99400687 | MS.gene063157:intron | 40.0% | |
| ! | TTGAAAGACAAGGCATTACC+TGG | - | chr3.4:99401394-99401413 | None:intergenic | 40.0% |
| AGCTCCATGCTGTGATAAAG+AGG | - | chr3.4:99401138-99401157 | None:intergenic | 45.0% | |
| ATCTCTGCCATCAAAGAAGC+TGG | + | chr3.4:99400789-99400808 | MS.gene063157:CDS | 45.0% | |
| ATTCTATTGATCGGTGGCAG+CGG | + | chr3.4:99400292-99400311 | MS.gene063157:CDS | 45.0% | |
| CATGCTGTGATAAAGAGGGT+AGG | - | chr3.4:99401133-99401152 | None:intergenic | 45.0% | |
| CGGTTACATCGGAAAGTTCA+TGG | + | chr3.4:99400312-99400331 | MS.gene063157:CDS | 45.0% | |
| CTACCCTCTTTATCACAGCA+TGG | + | chr3.4:99401131-99401150 | MS.gene063157:CDS | 45.0% | |
| GATGGATGATTTAGCAGGGT+TGG | - | chr3.4:99400398-99400417 | None:intergenic | 45.0% | |
| GCTCCATGCTGTGATAAAGA+GGG | - | chr3.4:99401137-99401156 | None:intergenic | 45.0% | |
| GGTTGGAAAGAGTTGAGTCT+CGG | - | chr3.4:99400381-99400400 | None:intergenic | 45.0% | |
| GTGTCAAGCAACTACTTTGC+TGG | + | chr3.4:99401101-99401120 | MS.gene063157:CDS | 45.0% | |
| TGCTTCAGAAGTTGTTCCTC+TGG | - | chr3.4:99401475-99401494 | None:intergenic | 45.0% | |
| TGGTACTGTGTTCGATTCCT+GGG | - | chr3.4:99401555-99401574 | None:intergenic | 45.0% | |
| ! | AAAGACAAGGCATTACCTGG+TGG | - | chr3.4:99401391-99401410 | None:intergenic | 45.0% |
| ! | ACAGGTGGTTTGTGTGCATA+GGG | - | chr3.4:99401602-99401621 | None:intergenic | 45.0% |
| ACCACCTGTGTTAGACTCAG+TGG | + | chr3.4:99401613-99401632 | MS.gene063157:intron | 50.0% | |
| ACCACTGAGTCTAACACAGG+TGG | - | chr3.4:99401617-99401636 | None:intergenic | 50.0% | |
| ACGGCATATGCACTCTTTGC+CGG | - | chr3.4:99401029-99401048 | None:intergenic | 50.0% | |
| CTAGGAGATGGAAACCCCAA+AGG | + | chr3.4:99401188-99401207 | MS.gene063157:CDS | 50.0% | |
| GAGTTGAGTCTCGGATGAGA+AGG | - | chr3.4:99400372-99400391 | None:intergenic | 50.0% | |
| GGATGAGAAGGAAGGTTGGA+TGG | - | chr3.4:99400360-99400379 | None:intergenic | 50.0% | |
| GTGGTACTGTGTTCGATTCC+TGG | - | chr3.4:99401556-99401575 | None:intergenic | 50.0% | |
| TCAGAGTCATGCAGTTGAGC+CGG | + | chr3.4:99401007-99401026 | MS.gene063157:CDS | 50.0% | |
| TCTCGGATGAGAAGGAAGGT+TGG | - | chr3.4:99400364-99400383 | None:intergenic | 50.0% | |
| TGAGTCTCGGATGAGAAGGA+AGG | - | chr3.4:99400368-99400387 | None:intergenic | 50.0% | |
| ! | AGGTGGTTTGTGTGCATAGG+GGG | - | chr3.4:99401600-99401619 | None:intergenic | 50.0% |
| ! | CACAGGTGGTTTGTGTGCAT+AGG | - | chr3.4:99401603-99401622 | None:intergenic | 50.0% |
| ! | CAGGTGGTTTGTGTGCATAG+GGG | - | chr3.4:99401601-99401620 | None:intergenic | 50.0% |
| !! | CTTTGGGGTTTCCATCTCCT+AGG | - | chr3.4:99401190-99401209 | None:intergenic | 50.0% |
| !! | GCGCCGAATTCTGGCTTTAA+CGG | - | chr3.4:99401048-99401067 | None:intergenic | 50.0% |
| ATCGGTGGCAGCGGTTACAT+CGG | + | chr3.4:99400301-99400320 | MS.gene063157:CDS | 55.0% | |
| CAGAATTCGGCGCAGCATTG+AGG | + | chr3.4:99401055-99401074 | MS.gene063157:CDS | 55.0% | |
| CTCAATGCTGCGCCGAATTC+TGG | - | chr3.4:99401057-99401076 | None:intergenic | 55.0% | |
| GTGGAAGCTAGCGTCAAAGC+TGG | + | chr3.4:99400334-99400353 | MS.gene063157:CDS | 55.0% | |
| ! | AATTCGGCGCAGCATTGAGG+CGG | + | chr3.4:99401058-99401077 | MS.gene063157:CDS | 55.0% |
| ! | CGGCGCAGCATTGAGGCGGA+AGG | + | chr3.4:99401062-99401081 | MS.gene063157:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 99400262 | 99401830 | 99400262 | ID=MS.gene063157 |
| chr3.4 | mRNA | 99400262 | 99401830 | 99400262 | ID=MS.gene063157.t1;Parent=MS.gene063157 |
| chr3.4 | exon | 99400262 | 99400456 | 99400262 | ID=MS.gene063157.t1.exon1;Parent=MS.gene063157.t1 |
| chr3.4 | CDS | 99400262 | 99400456 | 99400262 | ID=cds.MS.gene063157.t1;Parent=MS.gene063157.t1 |
| chr3.4 | exon | 99400687 | 99400821 | 99400687 | ID=MS.gene063157.t1.exon2;Parent=MS.gene063157.t1 |
| chr3.4 | CDS | 99400687 | 99400821 | 99400687 | ID=cds.MS.gene063157.t1;Parent=MS.gene063157.t1 |
| chr3.4 | exon | 99400972 | 99401209 | 99400972 | ID=MS.gene063157.t1.exon3;Parent=MS.gene063157.t1 |
| chr3.4 | CDS | 99400972 | 99401209 | 99400972 | ID=cds.MS.gene063157.t1;Parent=MS.gene063157.t1 |
| chr3.4 | exon | 99401299 | 99401502 | 99401299 | ID=MS.gene063157.t1.exon4;Parent=MS.gene063157.t1 |
| chr3.4 | CDS | 99401299 | 99401502 | 99401299 | ID=cds.MS.gene063157.t1;Parent=MS.gene063157.t1 |
| chr3.4 | exon | 99401664 | 99401830 | 99401664 | ID=MS.gene063157.t1.exon5;Parent=MS.gene063157.t1 |
| chr3.4 | CDS | 99401664 | 99401830 | 99401664 | ID=cds.MS.gene063157.t1;Parent=MS.gene063157.t1 |
| Gene Sequence |
| Protein sequence |
