AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene063161

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene063161.t1 MTR_4g070080 81.579 76 14 0 1 76 1 76 4.11e-43 137
MS.gene063161.t1 MTR_4g070080 81.579 76 14 0 1 76 1 76 1.28e-42 136
MS.gene063161.t1 MTR_4g070190 78.667 75 16 0 2 76 4 78 4.04e-41 133
MS.gene063161.t1 MTR_4g070140 76.000 75 18 0 2 76 4 78 7.25e-38 125
MS.gene063161.t1 MTR_3g084040 52.174 69 32 1 7 75 37 104 1.75e-22 85.1
MS.gene063161.t1 MTR_3g075500 55.405 74 33 0 3 76 203 276 2.09e-22 88.2
MS.gene063161.t1 MTR_3g080130 50.000 68 34 0 7 74 37 104 7.62e-21 80.5
MS.gene063161.t1 MTR_4g109540 47.826 69 36 0 7 75 43 111 1.72e-20 82.8
MS.gene063161.t1 MTR_7g013730 45.714 70 38 0 7 76 41 110 1.76e-20 82.4
MS.gene063161.t1 MTR_3g075500 55.882 68 30 0 3 70 203 270 2.75e-20 82.4
MS.gene063161.t1 MTR_3g084040 51.562 64 30 1 7 70 37 99 2.84e-20 78.2
MS.gene063161.t1 MTR_4g104470 52.174 69 33 0 7 75 217 285 4.29e-20 82.0
MS.gene063161.t1 MTR_4g104470 40.845 71 42 0 5 75 121 191 2.19e-11 58.5
MS.gene063161.t1 MTR_1g064230 53.521 71 33 0 5 75 195 265 9.70e-20 80.9
MS.gene063161.t1 MTR_7g013740 42.857 70 40 0 7 76 41 110 2.32e-19 77.4
MS.gene063161.t1 MTR_4g109540 49.231 65 33 0 10 74 54 118 1.15e-18 78.2
MS.gene063161.t1 MTR_7g099940 51.471 68 33 0 7 74 36 103 2.29e-18 74.3
MS.gene063161.t1 MTR_7g105260 45.070 71 39 0 4 74 30 100 6.19e-18 73.2
MS.gene063161.t1 MTR_1g045510 41.975 81 47 0 2 82 200 280 2.06e-17 74.7
MS.gene063161.t1 MTR_4g081520 47.297 74 39 0 1 74 46 119 3.43e-17 71.6
MS.gene063161.t1 MTR_3g025880 47.059 68 36 0 7 74 45 112 9.58e-17 73.9
MS.gene063161.t1 MTR_6g477870 44.118 68 38 0 7 74 96 163 1.06e-16 71.2
MS.gene063161.t1 MTR_3g116130 52.632 57 27 0 7 63 30 86 2.57e-16 72.4
MS.gene063161.t1 MTR_4g035310 53.333 60 27 1 7 65 17 76 2.86e-16 71.6
MS.gene063161.t1 MTR_4g035310 53.333 60 27 1 7 65 17 76 3.55e-16 71.2
MS.gene063161.t1 MTR_3g116130 52.632 57 27 0 7 63 30 86 3.96e-16 71.2
MS.gene063161.t1 MTR_3g014000 47.945 73 27 2 9 74 37 105 5.06e-16 68.6
MS.gene063161.t1 MTR_3g092490 47.059 68 35 1 7 74 27 93 5.07e-16 69.3
MS.gene063161.t1 MTR_3g092490 47.059 68 35 1 7 74 27 93 1.48e-15 69.3
MS.gene063161.t1 MTR_3g092490 47.059 68 35 1 7 74 27 93 1.55e-15 69.3
MS.gene063161.t1 MTR_8g024520 44.944 89 43 3 7 95 26 108 2.36e-15 69.3
MS.gene063161.t1 MTR_8g024520 44.944 89 43 3 7 95 26 108 2.41e-15 69.3
MS.gene063161.t1 MTR_6g477870 42.188 64 37 0 7 70 96 159 8.97e-15 65.9
MS.gene063161.t1 MTR_7g117495 47.458 59 31 0 7 65 19 77 1.09e-14 67.0
MS.gene063161.t1 MTR_7g117495 47.458 59 31 0 7 65 19 77 1.11e-14 67.0
MS.gene063161.t1 MTR_3g055990 42.857 77 42 1 7 83 7 81 1.75e-14 67.4
MS.gene063161.t1 MTR_3g055990 42.857 77 42 1 7 83 7 81 1.82e-14 67.4
MS.gene063161.t1 MTR_3g029580 37.838 74 46 0 1 74 27 100 3.28e-14 63.5
MS.gene063161.t1 MTR_1g092860 40.230 87 50 1 7 93 193 277 4.04e-14 65.9
MS.gene063161.t1 MTR_5g064120 43.548 62 35 0 7 68 17 78 6.54e-14 65.5
MS.gene063161.t1 MTR_4g063560 39.706 68 41 0 7 74 34 101 1.08e-13 61.6
MS.gene063161.t1 MTR_2g026180 40.260 77 44 1 7 83 5 79 1.81e-13 64.7
MS.gene063161.t1 MTR_2g096560 39.706 68 41 0 7 74 8 75 1.97e-13 60.5
MS.gene063161.t1 MTR_3g029580 37.143 70 44 0 1 70 27 96 4.52e-13 60.8
MS.gene063161.t1 MTR_4g081510 36.170 94 54 1 2 89 40 133 4.70e-13 61.6
MS.gene063161.t1 MTR_7g106440 35.802 81 52 0 6 86 212 292 9.74e-13 62.4
MS.gene063161.t1 MTR_3g065190 39.535 86 49 2 9 93 115 198 2.57e-12 61.2
MS.gene063161.t1 MTR_5g097580 41.558 77 43 2 7 83 7 81 2.60e-12 61.2
MS.gene063161.t1 MTR_5g097580 41.558 77 43 2 7 83 7 81 3.51e-12 60.8
MS.gene063161.t1 MTR_4g085540 47.692 65 33 1 9 73 125 188 4.92e-12 60.5
MS.gene063161.t1 MTR_7g102730 49.180 61 30 1 9 69 101 160 7.17e-12 60.1
MS.gene063161.t1 MTR_1g056520 33.333 78 52 0 6 83 207 284 1.31e-11 58.9
MS.gene063161.t1 MTR_4g036415 42.647 68 39 0 9 76 454 521 2.00e-11 58.9
MS.gene063161.t1 MTR_1g073690 34.615 78 49 1 7 84 7 82 2.27e-11 58.5
MS.gene063161.t1 MTR_8g463890 50.000 48 24 0 7 54 74 121 4.83e-11 57.8
MS.gene063161.t1 MTR_4g117350 36.765 68 43 0 7 74 72 139 5.84e-11 55.8
MS.gene063161.t1 MTR_7g088140 38.983 59 36 0 7 65 128 186 6.23e-11 57.4
MS.gene063161.t1 MTR_7g088140 38.983 59 36 0 7 65 128 186 6.55e-11 57.4
MS.gene063161.t1 MTR_4g117350 37.500 64 40 0 7 70 72 135 7.67e-11 55.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene063161.t1 AT2G21660 75.676 74 18 0 3 76 5 78 7.39e-39 127
MS.gene063161.t1 AT2G21660 75.676 74 18 0 3 76 5 78 1.20e-38 127
MS.gene063161.t1 AT4G39260 68.421 76 24 0 1 76 1 76 1.23e-36 119
MS.gene063161.t1 AT4G39260 68.421 76 24 0 1 76 1 76 2.14e-36 119
MS.gene063161.t1 AT4G39260 68.421 76 24 0 1 76 1 76 7.40e-36 119
MS.gene063161.t1 AT4G39260 70.588 68 20 0 1 68 1 68 6.17e-33 110
MS.gene063161.t1 AT3G26420 56.757 74 32 0 3 76 4 77 2.57e-26 97.4
MS.gene063161.t1 AT3G23830 57.971 69 29 0 7 75 36 104 2.37e-25 92.0
MS.gene063161.t1 AT3G23830 57.971 69 29 0 7 75 36 104 2.37e-25 92.0
MS.gene063161.t1 AT4G13850 55.556 72 31 1 7 77 36 107 4.13e-23 86.3
MS.gene063161.t1 AT4G13850 55.556 72 31 1 7 77 36 107 4.39e-23 86.7
MS.gene063161.t1 AT4G13850 55.556 72 31 1 7 77 36 107 5.51e-23 86.7
MS.gene063161.t1 AT4G13850 55.556 72 31 1 7 77 36 107 6.23e-23 86.7
MS.gene063161.t1 AT5G61030 50.725 69 34 0 7 75 41 109 2.88e-21 85.5
MS.gene063161.t1 AT5G61030 50.725 69 34 0 7 75 41 109 2.88e-21 85.5
MS.gene063161.t1 AT4G24770 50.685 73 36 0 3 75 241 313 1.55e-20 83.6
MS.gene063161.t1 AT4G24770 42.254 71 41 0 5 75 149 219 6.16e-11 57.4
MS.gene063161.t1 AT4G24770 50.685 73 36 0 3 75 241 313 1.55e-20 83.6
MS.gene063161.t1 AT4G24770 42.254 71 41 0 5 75 149 219 6.16e-11 57.4
MS.gene063161.t1 AT2G21690 45.556 90 46 1 4 93 5 91 5.76e-20 77.8
MS.gene063161.t1 AT3G53460 52.941 68 32 0 7 74 279 346 5.86e-20 82.4
MS.gene063161.t1 AT3G53460 52.941 68 32 0 7 74 258 325 6.93e-20 82.0
MS.gene063161.t1 AT3G53460 52.941 68 32 0 7 74 258 325 6.93e-20 82.0
MS.gene063161.t1 AT3G53460 52.941 68 32 0 7 74 258 325 6.93e-20 82.0
MS.gene063161.t1 AT2G37220 51.471 68 33 0 7 74 205 272 1.37e-19 80.9
MS.gene063161.t1 AT2G37220 42.857 70 40 0 5 74 90 159 4.74e-11 57.4
MS.gene063161.t1 AT5G50250 48.571 70 36 0 6 75 207 276 3.02e-19 79.7
MS.gene063161.t1 AT5G50250 40.845 71 42 0 5 75 112 182 7.50e-11 57.0
MS.gene063161.t1 AT1G18630 50.000 68 34 0 7 74 37 104 4.55e-19 76.6
MS.gene063161.t1 AT1G74230 51.471 68 32 1 7 74 35 101 1.02e-18 78.6
MS.gene063161.t1 AT2G37510 52.941 68 32 0 7 74 35 102 1.09e-18 75.5
MS.gene063161.t1 AT5G47320 48.529 68 35 0 7 74 32 99 2.01e-18 76.3
MS.gene063161.t1 AT2G46780 53.226 62 29 0 7 68 23 84 1.85e-17 75.5
MS.gene063161.t1 AT2G46780 53.226 62 29 0 7 68 23 84 1.85e-17 75.5
MS.gene063161.t1 AT3G08000 43.023 86 47 1 7 92 42 125 1.92e-17 72.4
MS.gene063161.t1 AT4G13860 45.588 68 37 0 7 74 4 71 4.78e-17 69.7
MS.gene063161.t1 AT1G22910 54.386 57 26 0 7 63 14 70 7.79e-17 73.9
MS.gene063161.t1 AT5G06210 42.466 73 42 0 4 76 32 104 9.40e-17 70.5
MS.gene063161.t1 AT1G20880 52.632 57 27 0 7 63 25 81 2.17e-16 72.0
MS.gene063161.t1 AT1G20880 52.632 57 27 0 7 63 25 81 2.17e-16 72.0
MS.gene063161.t1 AT1G20880 52.632 57 27 0 7 63 25 81 2.17e-16 72.0
MS.gene063161.t1 AT1G60650 44.928 69 38 0 4 72 10 78 3.34e-16 71.6
MS.gene063161.t1 AT1G60650 44.928 69 38 0 4 72 10 78 3.34e-16 71.6
MS.gene063161.t1 AT1G60000 42.466 73 42 0 2 74 173 245 3.50e-16 71.2
MS.gene063161.t1 AT1G22910 54.386 57 26 0 7 63 14 70 3.71e-16 70.9
MS.gene063161.t1 AT1G22910 53.448 58 27 0 7 64 14 71 3.81e-16 70.9
MS.gene063161.t1 AT5G54580 46.575 73 39 0 2 74 52 124 4.53e-16 68.9
MS.gene063161.t1 AT1G76460 52.632 57 27 0 7 63 25 81 5.34e-16 70.9
MS.gene063161.t1 AT5G04280 48.485 66 34 0 7 72 8 73 2.20e-15 69.7
MS.gene063161.t1 AT1G33470 52.632 57 27 0 7 63 8 64 2.56e-15 68.6
MS.gene063161.t1 AT1G33470 52.632 57 27 0 7 63 8 64 3.07e-15 68.6
MS.gene063161.t1 AT1G33470 52.632 57 27 0 7 63 8 64 3.08e-15 68.6
MS.gene063161.t1 AT5G55550 42.857 77 42 1 7 83 7 81 3.85e-15 69.3
MS.gene063161.t1 AT5G55550 42.857 77 42 1 7 83 7 81 3.85e-15 69.3
MS.gene063161.t1 AT5G55550 42.857 77 42 1 7 83 7 81 3.85e-15 69.3
MS.gene063161.t1 AT5G55550 42.857 77 42 1 7 83 7 81 3.85e-15 69.3
MS.gene063161.t1 AT5G55550 42.857 77 42 1 7 83 7 81 5.03e-15 68.9
MS.gene063161.t1 AT5G55550 42.857 77 42 1 7 83 7 81 5.03e-15 68.9
MS.gene063161.t1 AT5G55550 42.857 77 42 1 7 83 7 81 5.03e-15 68.9
MS.gene063161.t1 AT5G55550 42.857 77 42 1 7 83 7 81 5.03e-15 68.9
MS.gene063161.t1 AT5G55550 42.857 77 42 1 7 83 7 81 5.03e-15 68.9
MS.gene063161.t1 AT1G78260 45.161 62 34 0 7 68 18 79 6.20e-15 68.2
MS.gene063161.t1 AT3G07810 42.308 78 43 1 7 84 7 82 7.50e-15 68.6
MS.gene063161.t1 AT1G22330 45.161 62 34 0 7 68 18 79 1.06e-14 67.4
MS.gene063161.t1 AT4G26650 41.558 77 43 1 7 83 16 90 1.34e-14 67.8
MS.gene063161.t1 AT3G46020 37.500 72 45 0 4 75 5 76 1.44e-14 63.9
MS.gene063161.t1 AT4G26650 41.558 77 43 1 7 83 13 87 1.53e-14 67.8
MS.gene063161.t1 AT1G78260 45.161 62 34 0 7 68 18 79 1.79e-14 66.6
MS.gene063161.t1 AT5G53720 43.590 78 43 1 5 82 8 84 4.74e-14 62.4
MS.gene063161.t1 AT3G07810 42.857 77 42 1 7 83 7 81 5.58e-14 66.2
MS.gene063161.t1 AT5G55550 41.429 70 39 1 7 76 7 74 7.95e-14 65.9
MS.gene063161.t1 AT5G11412 42.029 69 36 1 7 71 53 121 9.09e-14 63.5
MS.gene063161.t1 AT5G55550 41.429 70 39 1 7 76 7 74 9.45e-14 65.5
MS.gene063161.t1 AT5G53680 45.588 68 33 1 7 70 14 81 1.15e-13 63.2
MS.gene063161.t1 AT5G59865 44.118 68 38 0 9 76 29 96 1.45e-13 61.6
MS.gene063161.t1 AT3G20930 39.706 68 41 0 7 74 283 350 2.56e-13 64.3
MS.gene063161.t1 AT5G51300 43.056 72 41 0 5 76 479 550 2.81e-13 64.3
MS.gene063161.t1 AT5G51300 43.056 72 41 0 5 76 479 550 2.81e-13 64.3
MS.gene063161.t1 AT5G51300 43.056 72 41 0 5 76 479 550 2.81e-13 64.3
MS.gene063161.t1 AT1G01080 39.189 74 44 1 1 74 207 279 3.04e-13 63.5
MS.gene063161.t1 AT1G01080 39.189 74 44 1 1 74 208 280 3.06e-13 63.5
MS.gene063161.t1 AT2G37510 38.710 93 32 1 7 74 35 127 3.85e-13 61.6
MS.gene063161.t1 AT3G54770 47.458 59 31 0 7 65 18 76 5.56e-13 62.8
MS.gene063161.t1 AT3G54770 47.458 59 31 0 7 65 18 76 5.68e-13 62.4
MS.gene063161.t1 AT2G22100 47.368 57 30 0 9 65 166 222 7.33e-13 62.8
MS.gene063161.t1 AT4G13860 49.057 53 27 0 22 74 2 54 7.98e-13 58.5
MS.gene063161.t1 AT1G01080 40.580 69 40 1 1 69 207 274 1.22e-12 62.0
MS.gene063161.t1 AT2G19380 45.614 57 31 0 9 65 411 467 1.38e-12 62.0
MS.gene063161.t1 AT2G23350 50.769 65 31 1 9 73 137 200 2.39e-12 61.6
MS.gene063161.t1 AT1G17640 45.763 59 32 0 7 65 67 125 4.89e-12 60.5
MS.gene063161.t1 AT1G17640 46.296 54 29 0 7 60 158 211 7.30e-12 60.1
MS.gene063161.t1 AT1G17640 45.763 59 32 0 7 65 67 125 4.89e-12 60.5
MS.gene063161.t1 AT1G17640 46.296 54 29 0 7 60 158 211 7.30e-12 60.1
MS.gene063161.t1 AT1G17640 45.763 59 32 0 7 65 67 125 4.89e-12 60.5
MS.gene063161.t1 AT1G17640 46.296 54 29 0 7 60 158 211 7.30e-12 60.1
MS.gene063161.t1 AT5G47620 38.961 77 45 1 7 83 7 81 5.73e-12 60.5
MS.gene063161.t1 AT5G47620 38.961 77 45 1 7 83 7 81 5.73e-12 60.5
MS.gene063161.t1 AT5G47620 38.961 77 45 1 7 83 7 81 5.73e-12 60.5
MS.gene063161.t1 AT5G47620 48.980 49 25 0 7 55 7 55 6.18e-12 60.5
MS.gene063161.t1 AT2G27330 36.364 66 42 0 9 74 24 89 6.58e-12 57.4
MS.gene063161.t1 AT1G54080 43.077 65 37 0 6 70 148 212 9.05e-12 59.7
MS.gene063161.t1 AT3G52150 42.254 71 41 0 5 75 176 246 1.05e-11 58.9
MS.gene063161.t1 AT3G52150 42.254 71 41 0 5 75 176 246 1.05e-11 58.9
MS.gene063161.t1 AT3G52380 36.232 69 44 0 6 74 219 287 1.14e-11 59.3
MS.gene063161.t1 AT4G36960 41.270 63 37 0 4 66 1 63 1.18e-11 59.3
MS.gene063161.t1 AT4G36960 41.270 63 37 0 4 66 1 63 1.18e-11 59.3
MS.gene063161.t1 AT4G14300 36.585 82 48 1 7 88 7 84 1.35e-11 59.3
MS.gene063161.t1 AT4G14300 36.585 82 48 1 7 88 7 84 1.35e-11 59.3
MS.gene063161.t1 AT3G14100 41.538 65 38 0 6 70 144 208 2.26e-11 58.5
MS.gene063161.t1 AT3G13224 38.571 70 40 1 7 73 20 89 2.55e-11 57.8
MS.gene063161.t1 AT3G13224 39.394 66 40 0 7 72 110 175 6.36e-11 56.6
MS.gene063161.t1 AT3G20930 36.986 73 41 1 7 74 283 355 2.82e-11 58.5
MS.gene063161.t1 AT2G33410 45.455 55 30 0 1 55 1 55 3.31e-11 58.2
MS.gene063161.t1 AT2G22090 44.068 59 33 0 7 65 105 163 3.77e-11 58.2
MS.gene063161.t1 AT2G18510 37.209 86 51 2 9 93 115 198 4.36e-11 57.8
MS.gene063161.t1 AT2G22090 44.068 59 33 0 7 65 105 163 4.74e-11 57.8
MS.gene063161.t1 AT1G22760 47.541 61 31 1 9 69 139 198 5.19e-11 57.8
MS.gene063161.t1 AT2G14160 37.500 80 33 2 4 66 6 85 6.88e-11 53.9
MS.gene063161.t1 AT5G40490 37.500 72 45 0 7 78 114 185 7.68e-11 57.0
MS.gene063161.t1 AT3G04500 37.681 69 43 0 2 70 133 201 7.70e-11 56.6
MS.gene063161.t1 AT3G13224 38.571 70 40 1 7 73 11 80 8.87e-11 57.0
MS.gene063161.t1 AT3G13224 39.394 66 40 0 7 72 101 166 8.96e-11 57.0
MS.gene063161.t1 AT1G73530 33.333 69 46 0 7 75 78 146 9.30e-11 55.8

Find 28 sgRNAs with CRISPR-Local

Find 86 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTGGAAGATCAAGAGGATT+TGG 0.294131 3.2:+92094018 MS.gene063161:CDS
GTTATCACCGATCGTGAAAC+TGG 0.362798 3.2:+92094000 MS.gene063161:CDS
GTGGCTCTGACAGTAGAAAC+TGG 0.459380 3.2:+92094355 MS.gene063161:CDS
GTTGAATACCGATGCTTTGT+TGG 0.464495 3.2:+92093607 MS.gene063161:CDS
CTTTGTTGGTGGACTTGCAT+GGG 0.465470 3.2:+92093621 MS.gene063161:CDS
CTCAAGAGCTTCGTTGTCAG+TGG 0.495714 3.2:-92093644 None:intergenic
GCGATGAAAGATGCGATTGA+AGG 0.503882 3.2:+92094066 MS.gene063161:CDS
ATGAACGGCCAAGATCTTGA+TGG 0.505893 3.2:+92094090 MS.gene063161:CDS
TGTCACATTCTCTACGGAGC+AGG 0.509697 3.2:+92094044 MS.gene063161:CDS
GCTTTGTTGGTGGACTTGCA+TGG 0.519425 3.2:+92093620 MS.gene063161:CDS
TGGATTTGTCACATTCTCTA+CGG 0.520808 3.2:+92094038 MS.gene063161:CDS
TGATCTTCCAGTTTCACGAT+CGG 0.521619 3.2:-92094007 None:intergenic
TGTTACGTCCATCAAGATCT+TGG 0.527371 3.2:-92094098 None:intergenic
TCGAGAGGCGGTGATGGCGG+TGG 0.528930 3.2:+92094336 MS.gene063161:CDS
CGATGAAAGATGCGATTGAA+GGG 0.542649 3.2:+92094067 MS.gene063161:CDS
TGGTGAAATCGTCGAATCGA+AGG 0.542807 3.2:+92093684 MS.gene063161:CDS
CGATTCGACGATTTCACCAA+AGG 0.547099 3.2:-92093680 None:intergenic
AGATACTCGAGAGGCGGTGA+TGG 0.555850 3.2:+92094330 MS.gene063161:intron
CGTGAAACTGGAAGATCAAG+AGG 0.575579 3.2:+92094012 MS.gene063161:CDS
GAATACCGATGCTTTGTTGG+TGG 0.577401 3.2:+92093610 MS.gene063161:CDS
TACTCGAGAGGCGGTGATGG+CGG 0.579779 3.2:+92094333 MS.gene063161:CDS
TCGGTATTCAACTTCCGCCA+TGG 0.595134 3.2:-92093596 None:intergenic
CTCTGACAGTAGAAACTGGA+GGG 0.619176 3.2:+92094359 MS.gene063161:CDS
GATGCGATTGAAGGGATGAA+CGG 0.619661 3.2:+92094075 MS.gene063161:CDS
CAAGTCCACCAACAAAGCAT+CGG 0.636350 3.2:-92093615 None:intergenic
GGCTCCAGATACTCGAGAGG+CGG 0.636811 3.2:+92094324 MS.gene063161:intron
GCTCTGACAGTAGAAACTGG+AGG 0.714944 3.2:+92094358 MS.gene063161:CDS
GGTGGCTCCAGATACTCGAG+AGG 0.728248 3.2:+92094321 MS.gene063161:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTAATCACTTCAAAT+CGG + chr3.2:92093860-92093879 MS.gene063161:intron 15.0%
!!! ACGATTCTTTGTTTTTGTTT+AGG + chr3.2:92093978-92093997 MS.gene063161:intron 25.0%
TGTGTAAATTGAAGATCGAT+CGG + chr3.2:92093901-92093920 MS.gene063161:intron 30.0%
TGGATTTGTCACATTCTCTA+CGG + chr3.2:92094038-92094057 MS.gene063161:CDS 35.0%
ACAGAACAGAACAGAACAGA+AGG - chr3.2:92093768-92093787 None:intergenic 40.0%
ACGTAACATCACTGTGAATG+AGG + chr3.2:92094113-92094132 MS.gene063161:intron 40.0%
ACTGGAAGATCAAGAGGATT+TGG + chr3.2:92094018-92094037 MS.gene063161:CDS 40.0%
ATCGGAAATCTGACACGATT+CGG + chr3.2:92093723-92093742 MS.gene063161:intron 40.0%
CGATGAAAGATGCGATTGAA+GGG + chr3.2:92094067-92094086 MS.gene063161:CDS 40.0%
GTTGAATACCGATGCTTTGT+TGG + chr3.2:92093607-92093626 MS.gene063161:CDS 40.0%
TGATCTTCCAGTTTCACGAT+CGG - chr3.2:92094010-92094029 None:intergenic 40.0%
TGTTACGTCCATCAAGATCT+TGG - chr3.2:92094101-92094120 None:intergenic 40.0%
TTTCCGATCTCAGCAACAAA+CGG - chr3.2:92093711-92093730 None:intergenic 40.0%
! AATCTGACACGATTCGGATT+TGG + chr3.2:92093729-92093748 MS.gene063161:intron 40.0%
!!! GAGAAAGCGTTTTCTTCCTT+TGG + chr3.2:92093664-92093683 MS.gene063161:CDS 40.0%
ATGAACGGCCAAGATCTTGA+TGG + chr3.2:92094090-92094109 MS.gene063161:CDS 45.0%
CAAGTCCACCAACAAAGCAT+CGG - chr3.2:92093618-92093637 None:intergenic 45.0%
CGATTCGACGATTTCACCAA+AGG - chr3.2:92093683-92093702 None:intergenic 45.0%
CGTGAAACTGGAAGATCAAG+AGG + chr3.2:92094012-92094031 MS.gene063161:CDS 45.0%
CTCTGACAGTAGAAACTGGA+GGG + chr3.2:92094359-92094378 MS.gene063161:CDS 45.0%
GATGCGATTGAAGGGATGAA+CGG + chr3.2:92094075-92094094 MS.gene063161:CDS 45.0%
GCGATGAAAGATGCGATTGA+AGG + chr3.2:92094066-92094085 MS.gene063161:CDS 45.0%
GTTATCACCGATCGTGAAAC+TGG + chr3.2:92094000-92094019 MS.gene063161:CDS 45.0%
TGGTGAAATCGTCGAATCGA+AGG + chr3.2:92093684-92093703 MS.gene063161:CDS 45.0%
! GAATACCGATGCTTTGTTGG+TGG + chr3.2:92093610-92093629 MS.gene063161:CDS 45.0%
!! CTTTGTTGGTGGACTTGCAT+GGG + chr3.2:92093621-92093640 MS.gene063161:CDS 45.0%
CTCAAGAGCTTCGTTGTCAG+TGG - chr3.2:92093647-92093666 None:intergenic 50.0%
GCTCTGACAGTAGAAACTGG+AGG + chr3.2:92094358-92094377 MS.gene063161:CDS 50.0%
TGTCACATTCTCTACGGAGC+AGG + chr3.2:92094044-92094063 MS.gene063161:CDS 50.0%
! GGTCCGTTTGTTGCTGAGAT+CGG + chr3.2:92093705-92093724 MS.gene063161:intron 50.0%
!! GCTTTGTTGGTGGACTTGCA+TGG + chr3.2:92093620-92093639 MS.gene063161:CDS 50.0%
!! GTGGCTCTGACAGTAGAAAC+TGG + chr3.2:92094355-92094374 MS.gene063161:CDS 50.0%
AGATACTCGAGAGGCGGTGA+TGG + chr3.2:92094330-92094349 MS.gene063161:intron 55.0%
ATCACCGCCTCTCGAGTATC+TGG - chr3.2:92094331-92094350 None:intergenic 55.0%
GTGAATGAGGCTCAGAGTCG+TGG + chr3.2:92094126-92094145 MS.gene063161:intron 55.0%
! GGATATGGTGGAGGTGGCTA+CGG + chr3.2:92094294-92094313 MS.gene063161:intron 55.0%
!! CGTGATGGTGGTGGTGGATA+TGG + chr3.2:92094279-92094298 MS.gene063161:intron 55.0%
!! GATGGTGGTGGTGGATATGG+TGG + chr3.2:92094282-92094301 MS.gene063161:intron 55.0%
CATATCCACCACCACCTCCG+CGG - chr3.2:92094182-92094201 None:intergenic 60.0%
GGCTCCAGATACTCGAGAGG+CGG + chr3.2:92094324-92094343 MS.gene063161:intron 60.0%
GGTGGCTCCAGATACTCGAG+AGG + chr3.2:92094321-92094340 MS.gene063161:intron 60.0%
! GGTGGATATGGTGGAGGAGG+CGG + chr3.2:92094228-92094247 MS.gene063161:intron 60.0%
! GTGGATATGGTGGAGGAGGC+GGG + chr3.2:92094229-92094248 MS.gene063161:intron 60.0%
! TACTCGAGAGGCGGTGATGG+CGG + chr3.2:92094333-92094352 MS.gene063161:CDS 60.0%
! TGGATATGGTGGAGGAGGCG+GGG + chr3.2:92094230-92094249 MS.gene063161:intron 60.0%
!! CGTCGTGGAGGTGGTGGATA+TGG + chr3.2:92094216-92094235 MS.gene063161:intron 60.0%
!! CGTGGAGGTGGTGGATATGG+TGG + chr3.2:92094219-92094238 MS.gene063161:intron 60.0%
!! GGAGGTGGTGGATATGGTGG+AGG + chr3.2:92094222-92094241 MS.gene063161:intron 60.0%
!! GGAGGTGGTGGTGGATATGG+CGG + chr3.2:92094183-92094202 MS.gene063161:intron 60.0%
!! GGTGGTGGATATGGTGGAGG+AGG + chr3.2:92094225-92094244 MS.gene063161:intron 60.0%
!! GGTGGTGGATATGGTGGAGG+TGG + chr3.2:92094225-92094244 MS.gene063161:intron 60.0%
!! GGTGGTGGTGGATATGGTGG+AGG + chr3.2:92094285-92094304 MS.gene063161:intron 60.0%
GAGGCTCAGAGTCGTGGCAG+TGG + chr3.2:92094132-92094151 MS.gene063161:intron 65.0%
GCTCAGAGTCGTGGCAGTGG+CGG + chr3.2:92094135-92094154 MS.gene063161:intron 65.0%
GGAGGTGGCTACGGAGATGG+TGG + chr3.2:92094303-92094322 MS.gene063161:intron 65.0%
GGAGGTGGTGAACGTCGTGG+AGG + chr3.2:92094204-92094223 MS.gene063161:intron 65.0%
GGTGAACGTCGTGGAGGTGG+TGG + chr3.2:92094210-92094229 MS.gene063161:intron 65.0%
GGTGGAGGTGGCTACGGAGA+TGG + chr3.2:92094300-92094319 MS.gene063161:intron 65.0%
GGTGGTGAACGTCGTGGAGG+TGG + chr3.2:92094207-92094226 MS.gene063161:intron 65.0%
! GGATATGGTGGAGGAGGCGG+GGG + chr3.2:92094231-92094250 MS.gene063161:intron 65.0%
!! CGCGGAGGTGGTGGTGGATA+TGG + chr3.2:92094180-92094199 MS.gene063161:intron 65.0%
!! GGACGTCGTGATGGTGGTGG+TGG + chr3.2:92094273-92094292 MS.gene063161:intron 65.0%
!! GGTGGTGGATATGGCGGAGG+TGG + chr3.2:92094189-92094208 MS.gene063161:intron 65.0%
!! GGTGGTGGTGGATATGGCGG+AGG + chr3.2:92094186-92094205 MS.gene063161:intron 65.0%
!! GGTGGTGGTGGTGGATACCG+CGG + chr3.2:92094162-92094181 MS.gene063161:intron 65.0%
!! GGTTACGGAGGTGGTGGTGG+CGG + chr3.2:92094252-92094271 MS.gene063161:intron 65.0%
CAGAGTCGTGGCAGTGGCGG+AGG + chr3.2:92094138-92094157 MS.gene063161:intron 70.0%
GGCGGAGGTGGTGAACGTCG+TGG + chr3.2:92094201-92094220 MS.gene063161:intron 70.0%
GGTGGAGGAGGCGGGGGTTA+CGG + chr3.2:92094237-92094256 MS.gene063161:intron 70.0%
GGTGGATACCGCGGAGGTGG+TGG + chr3.2:92094171-92094190 MS.gene063161:intron 70.0%
! AGTCGTGGCAGTGGCGGAGG+CGG + chr3.2:92094141-92094160 MS.gene063161:intron 70.0%
! GGATACCGCGGAGGTGGTGG+TGG + chr3.2:92094174-92094193 MS.gene063161:intron 70.0%
! GGGGGTTACGGAGGTGGTGG+TGG + chr3.2:92094249-92094268 MS.gene063161:intron 70.0%
!! GGCGGACGTCGTGATGGTGG+TGG + chr3.2:92094270-92094289 MS.gene063161:intron 70.0%
!! GGTGGCGGACGTCGTGATGG+TGG + chr3.2:92094267-92094286 MS.gene063161:intron 70.0%
!! GGTGGTGGATACCGCGGAGG+TGG + chr3.2:92094168-92094187 MS.gene063161:intron 70.0%
!! GGTGGTGGCGGACGTCGTGA+TGG + chr3.2:92094264-92094283 MS.gene063161:intron 70.0%
!! GGTGGTGGTGGATACCGCGG+AGG + chr3.2:92094165-92094184 MS.gene063161:intron 70.0%
!! TCGAGAGGCGGTGATGGCGG+TGG + chr3.2:92094336-92094355 MS.gene063161:CDS 70.0%
GGAGGAGGCGGGGGTTACGG+AGG + chr3.2:92094240-92094259 MS.gene063161:intron 75.0%
GGAGGCGGGGGTTACGGAGG+TGG + chr3.2:92094243-92094262 MS.gene063161:intron 75.0%
GGCGGGGGTTACGGAGGTGG+TGG + chr3.2:92094246-92094265 MS.gene063161:intron 75.0%
! AGTGGCGGAGGCGGTGGTGG+TGG + chr3.2:92094150-92094169 MS.gene063161:intron 75.0%
!! CGTGGCAGTGGCGGAGGCGG+TGG + chr3.2:92094144-92094163 MS.gene063161:intron 80.0%
!! GGCAGTGGCGGAGGCGGTGG+TGG + chr3.2:92094147-92094166 MS.gene063161:intron 80.0%
!!! GGCGGAGGCGGTGGTGGTGG+TGG + chr3.2:92094153-92094172 MS.gene063161:intron 80.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 92093598 92094396 92093598 ID=MS.gene063161
chr3.2 mRNA 92093598 92094396 92093598 ID=MS.gene063161.t1;Parent=MS.gene063161
chr3.2 exon 92093598 92093705 92093598 ID=MS.gene063161.t1.exon1;Parent=MS.gene063161.t1
chr3.2 CDS 92093598 92093705 92093598 ID=cds.MS.gene063161.t1;Parent=MS.gene063161.t1
chr3.2 exon 92094000 92094114 92094000 ID=MS.gene063161.t1.exon2;Parent=MS.gene063161.t1
chr3.2 CDS 92094000 92094114 92094000 ID=cds.MS.gene063161.t1;Parent=MS.gene063161.t1
chr3.2 exon 92094332 92094396 92094332 ID=MS.gene063161.t1.exon3;Parent=MS.gene063161.t1
chr3.2 CDS 92094332 92094396 92094332 ID=cds.MS.gene063161.t1;Parent=MS.gene063161.t1
Gene Sequence

>MS.gene063161

ATGGCGGAAGTTGAATACCGATGCTTTGTTGGTGGACTTGCATGGGCCACTGACAACGAAGCTCTTGAGAAAGCGTTTTCTTCCTTTGGTGAAATCGTCGAATCGAAGGTCCGTTTGTTGCTGAGATCGGAAATCTGACACGATTCGGATTTGGATTTTCGTGATCTCCTTCTGTTCTGTTCTGTTCTGTTCTGTTCTGTGTTGTTACTCTCTGATTACTTCTTCATCTTTGATACTCATCTGTTACTCTATAATGATTCTCTTTTATTAATCACTTCAAATCGGTACGTTCATCTTCAATTTTGTGTAAATTGAAGATCGATCGGTTACTATCATTTTTTTTATTTTTATAATTTATGCGAAATTGAGCTAGATCTGATACGATTCTTTGTTTTTGTTTAGGTTATCACCGATCGTGAAACTGGAAGATCAAGAGGATTTGGATTTGTCACATTCTCTACGGAGCAGGCGATGAAAGATGCGATTGAAGGGATGAACGGCCAAGATCTTGATGGACGTAACATCACTGTGAATGAGGCTCAGAGTCGTGGCAGTGGCGGAGGCGGTGGTGGTGGTGGATACCGCGGAGGTGGTGGTGGATATGGCGGAGGTGGTGAACGTCGTGGAGGTGGTGGATATGGTGGAGGAGGCGGGGGTTACGGAGGTGGTGGTGGCGGACGTCGTGATGGTGGTGGTGGATATGGTGGAGGTGGCTACGGAGATGGTGGCTCCAGATACTCGAGAGGCGGTGATGGCGGTGGCTCTGACAGTAGAAACTGGAGGGAATAAGTTTCGTTGA
Protein sequence

>MS.gene063161.t1

MAEVEYRCFVGGLAWATDNEALEKAFSSFGEIVESKVITDRETGRSRGFGFVTFSTEQAMKDAIEGMNGQDLDGHTREAVMAVALTVETGGNKFR