AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene057684


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene057684.t1 MTR_4g073410 99.652 287 1 0 1 287 1 287 0.0 588
MS.gene057684.t1 MTR_5g022510 71.685 279 74 1 7 285 6 279 3.66e-152 426
MS.gene057684.t1 MTR_5g022510 71.545 246 65 1 40 285 14 254 3.08e-132 375
MS.gene057684.t1 MTR_4g061140 64.050 242 86 1 6 246 7 248 1.07e-110 320
MS.gene057684.t1 MTR_4g061140 63.750 240 86 1 6 244 7 246 3.97e-109 316
MS.gene057684.t1 MTR_4g061140 64.904 208 72 1 40 246 7 214 7.56e-94 276
MS.gene057684.t1 MTR_3g088160 49.237 262 106 6 14 248 100 361 9.55e-78 241
MS.gene057684.t1 MTR_3g088160 49.237 262 106 6 14 248 100 361 2.66e-77 241
MS.gene057684.t1 MTR_5g008440 53.614 166 62 2 80 244 30 181 8.94e-51 166
MS.gene057684.t1 MTR_3g107060 38.017 242 126 7 13 244 87 314 3.03e-43 150
MS.gene057684.t1 MTR_4g122640 29.358 218 107 7 75 249 111 324 5.18e-16 77.4
MS.gene057684.t1 MTR_7g029030 28.226 248 135 8 36 244 60 303 1.97e-15 75.5
MS.gene057684.t1 MTR_4g127670 28.102 274 142 10 32 258 55 320 1.07e-14 73.6
MS.gene057684.t1 MTR_1g077000 29.771 262 130 11 23 243 61 309 1.53e-14 73.2
MS.gene057684.t1 MTR_5g064610 34.911 169 76 5 24 158 109 277 1.57e-14 73.2
MS.gene057684.t1 MTR_4g095450 26.374 273 150 9 32 260 58 323 7.93e-14 70.9
MS.gene057684.t1 MTR_4g029180 27.344 256 126 9 35 243 61 303 2.39e-12 66.6
MS.gene057684.t1 MTR_7g086820 26.316 247 140 9 35 244 54 295 4.14e-12 65.9
MS.gene057684.t1 MTR_2g008160 30.952 168 97 6 9 164 30 190 5.00e-12 65.9
MS.gene057684.t1 MTR_5g074710 27.344 256 128 9 35 243 59 303 6.95e-12 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene057684.t1 AT4G35000 78.472 288 60 2 1 287 1 287 2.92e-160 447
MS.gene057684.t1 AT4G35970 66.431 283 89 2 5 287 3 279 1.65e-134 382
MS.gene057684.t1 AT4G35970 70.909 220 63 1 5 224 3 221 5.26e-113 325
MS.gene057684.t1 AT3G09640 62.083 240 91 0 7 246 9 248 5.92e-107 311
MS.gene057684.t1 AT3G09640 62.083 240 91 0 7 246 9 248 5.92e-107 311
MS.gene057684.t1 AT1G07890 60.331 242 95 1 6 246 7 248 5.28e-104 303
MS.gene057684.t1 AT1G07890 60.331 242 95 1 6 246 7 248 5.28e-104 303
MS.gene057684.t1 AT1G07890 60.331 242 95 1 6 246 7 248 5.28e-104 303
MS.gene057684.t1 AT1G07890 60.331 242 95 1 6 246 7 248 5.28e-104 303
MS.gene057684.t1 AT1G07890 60.331 242 95 1 6 246 7 248 5.28e-104 303
MS.gene057684.t1 AT1G07890 60.331 242 95 1 6 246 7 248 5.28e-104 303
MS.gene057684.t1 AT1G07890 60.331 242 95 1 6 246 7 248 5.28e-104 303
MS.gene057684.t1 AT1G07890 59.751 241 96 1 6 245 7 247 5.84e-103 301
MS.gene057684.t1 AT4G08390 48.047 256 108 4 14 244 106 361 2.62e-76 237
MS.gene057684.t1 AT4G08390 48.047 256 108 4 14 244 106 361 2.62e-76 237
MS.gene057684.t1 AT4G08390 48.047 256 108 4 14 244 106 361 2.62e-76 237
MS.gene057684.t1 AT4G08390 48.047 256 108 4 14 244 105 360 3.13e-76 237
MS.gene057684.t1 AT1G77490 48.828 256 106 4 14 244 85 340 1.70e-75 236
MS.gene057684.t1 AT1G77490 48.828 256 106 4 14 244 85 340 1.84e-75 236
MS.gene057684.t1 AT4G08390 44.141 256 92 5 14 244 106 335 2.18e-65 208
MS.gene057684.t1 AT4G32320 39.035 228 118 5 26 244 108 323 1.44e-41 146
MS.gene057684.t1 AT2G24800 32.308 195 90 4 90 244 120 312 7.38e-18 82.4
MS.gene057684.t1 AT4G31760 31.443 194 92 5 90 244 118 309 3.67e-17 80.5
MS.gene057684.t1 AT3G28200 30.890 191 90 4 90 244 115 299 2.15e-16 78.2
MS.gene057684.t1 AT4G30170 27.626 257 136 7 32 244 58 308 1.35e-15 76.3
MS.gene057684.t1 AT4G09010 35.185 162 67 5 33 158 49 208 1.42e-15 75.5
MS.gene057684.t1 AT4G09010 29.412 272 111 10 33 262 114 346 2.91e-15 75.5
MS.gene057684.t1 AT4G09010 29.412 272 111 10 33 262 161 393 5.38e-15 74.7
MS.gene057684.t1 AT5G17820 26.502 283 136 10 11 240 29 292 2.11e-14 72.4
MS.gene057684.t1 AT5G17820 26.280 293 144 10 1 240 72 345 6.96e-14 71.6
MS.gene057684.t1 AT5G14130 26.667 255 141 7 32 244 63 313 8.47e-14 70.9
MS.gene057684.t1 AT5G14130 26.667 255 141 7 32 244 104 354 1.38e-13 70.5
MS.gene057684.t1 AT4G33420 32.124 193 97 8 81 243 119 307 3.35e-13 69.3
MS.gene057684.t1 AT4G33420 32.124 193 97 8 81 243 166 354 3.92e-13 69.3
MS.gene057684.t1 AT4G37530 26.493 268 141 7 33 251 59 319 6.36e-13 68.6
MS.gene057684.t1 AT1G44970 26.562 256 135 9 35 243 79 328 6.92e-13 68.6
MS.gene057684.t1 AT1G14550 26.690 281 160 10 4 243 28 303 9.36e-13 67.8
MS.gene057684.t1 AT4G37520 26.119 268 142 7 33 251 59 319 1.46e-12 67.4
MS.gene057684.t1 AT2G18980 27.692 260 132 9 32 244 56 306 3.80e-12 66.2
MS.gene057684.t1 AT1G14540 25.442 283 160 10 4 243 23 297 1.14e-11 64.7
MS.gene057684.t1 AT4G37530 34.459 148 81 4 33 167 59 203 3.92e-11 62.8

Find 78 sgRNAs with CRISPR-Local

Find 283 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTGTTGCAGTTGAGGTTAC+TGG 0.120093 4.4:+35210083 MS.gene057684:CDS
TCCAACAGACAGGGCTTTAT+TGG 0.192934 4.4:+35210900 MS.gene057684:CDS
CCTTTGTGCTTCCAGCTTGC+GGG 0.246744 4.4:+35210059 MS.gene057684:intron
TCCGTTAACAATGGCGTTCC+CGG 0.279691 4.4:+35207132 None:intergenic
TCAACATAACGGCGAAATTC+AGG 0.286433 4.4:-35210928 None:intergenic
TGTCAATATCAGGATACTTT+TGG 0.287568 4.4:+35210849 MS.gene057684:intron
CCCACAGTCAACTTTGTTCC+TGG 0.312965 4.4:+35210110 MS.gene057684:CDS
GTACTGGCACAAAGCGCTTT+TGG 0.320365 4.4:+35211661 MS.gene057684:CDS
TTGTTGCAGTTGAGGTTACT+GGG 0.345113 4.4:+35210084 MS.gene057684:CDS
GGTAAATAATCACCTGATAA+AGG 0.356498 4.4:-35207681 None:intergenic
AGGTCTGCATATGAGATCTT+AGG 0.374897 4.4:-35207661 None:intergenic
GCACAACATACCCTTCTTCC+AGG 0.375359 4.4:-35210128 None:intergenic
AAAGATATTGTTGCACTGTC+TGG 0.377559 4.4:+35210500 MS.gene057684:CDS
CTCATATGCAGACCTTTATC+AGG 0.378885 4.4:+35207669 MS.gene057684:CDS
CATAAGAAACTTTCAGAGCT+TGG 0.401756 4.4:+35211595 MS.gene057684:CDS
ACCATTAGGTCCACCGGTCT+TGG 0.414832 4.4:-35207406 None:intergenic
CCATCAAACCCGGATCTCTC+TGG 0.417971 4.4:-35210627 None:intergenic
CCAGAGAGATCCGGGTTTGA+TGG 0.424242 4.4:+35210627 MS.gene057684:CDS
TCGTTCCGAATAGAACCATT+AGG 0.431324 4.4:-35207420 None:intergenic
ATCAGGAAGCCGCCCATCTC+TGG 0.443990 4.4:-35210237 None:intergenic
TCAACTTTGTTCCTGGAAGA+AGG 0.444361 4.4:+35210117 MS.gene057684:CDS
AAGATATTGTTGCACTGTCT+GGG 0.448168 4.4:+35210501 MS.gene057684:CDS
GGAGCAGTTGCCTTTGAGCT+TGG 0.449217 4.4:-35211625 None:intergenic
TGATTCAGGTGGCACGATGC+TGG 0.451069 4.4:+35207366 MS.gene057684:intron
ACCAAGACCGGTGGACCTAA+TGG 0.457462 4.4:+35207405 MS.gene057684:CDS
TCCAATAAAGCCCTGTCTGT+TGG 0.463470 4.4:-35210901 None:intergenic
GCCAGTACGGTTGCATCCAC+AGG 0.465545 4.4:-35211646 None:intergenic
TACTCTGAGTCTACTACTAC+CGG 0.469129 4.4:-35207151 None:intergenic
AACACACCTTGTTTAGCATC+AGG 0.470481 4.4:-35210254 None:intergenic
TGCTTAAACTTCCAACAGAC+AGG 0.474376 4.4:+35210890 MS.gene057684:CDS
AGAGCACATCCAGAGAGATC+CGG 0.490027 4.4:+35210618 MS.gene057684:CDS
GATCCGGGTTTGATGGCCCT+TGG 0.490119 4.4:+35210634 MS.gene057684:CDS
GCCGCTGCAGTGGTGATCCT+CGG 0.490613 4.4:+35211694 MS.gene057684:CDS
TCAAAAGTATGTACCAGAGA+TGG 0.493165 4.4:+35210224 MS.gene057684:CDS
TCCTGTGGATGCAACCGTAC+TGG 0.493313 4.4:+35211645 MS.gene057684:CDS
GTGGACCTAATGGTTCTATT+CGG 0.494846 4.4:+35207415 MS.gene057684:CDS
CTCAAAGGCAACTGCTCCTG+TGG 0.511925 4.4:+35211630 MS.gene057684:CDS
TTCAGAGGGTCCTCTGTCCA+AGG 0.512263 4.4:-35210651 None:intergenic
GTTTGATGGCCCTTGGACAG+AGG 0.519241 4.4:+35210641 MS.gene057684:CDS
GAGCACATCCAGAGAGATCC+GGG 0.520069 4.4:+35210619 MS.gene057684:CDS
TGCGGGTGTTGTTGCAGTTG+AGG 0.524490 4.4:+35210076 MS.gene057684:CDS
TTGTATGAAACTCACAAAAG+AGG 0.531958 4.4:+35211721 MS.gene057684:CDS
TTCTGTTGGCGATGAGAGCA+CGG 0.540281 4.4:-35207207 None:intergenic
TGTCCAAGGGCCATCAAACC+CGG 0.543652 4.4:-35210637 None:intergenic
CAACTTTGTTCCTGGAAGAA+GGG 0.545120 4.4:+35210118 MS.gene057684:CDS
CAAAAGTATGTACCAGAGAT+GGG 0.549843 4.4:+35210225 MS.gene057684:CDS
TGTATGAAACTCACAAAAGA+GGG 0.552331 4.4:+35211722 MS.gene057684:CDS
GAGGGGAGCACAGTTTCTGT+TGG 0.557155 4.4:-35207221 None:intergenic
TATGAGTTATCAAACTTCAG+AGG 0.559558 4.4:-35210666 None:intergenic
TGGCTTTGCACCAAGCTCAA+AGG 0.560692 4.4:+35211615 MS.gene057684:CDS
AAAAGCGCTTTGTGCCAGTA+CGG 0.571570 4.4:-35211659 None:intergenic
CGGCTTCCTGATGCTAAACA+AGG 0.575592 4.4:+35210248 MS.gene057684:CDS
TATGATGCAAAGACCAAGAC+CGG 0.589691 4.4:+35207393 MS.gene057684:CDS
AATAGAACCATTAGGTCCAC+CGG 0.593542 4.4:-35207412 None:intergenic
TACGCTAAGCGAAGCATGAG+GGG 0.595394 4.4:-35207238 None:intergenic
ATGAGTTATCAAACTTCAGA+GGG 0.599283 4.4:-35210665 None:intergenic
ACTGTCTGGGGCACATACGC+TGG 0.608033 4.4:+35210514 MS.gene057684:CDS
CCATACGATAAAAGATATCA+CGG 0.612766 4.4:-35210466 None:intergenic
TCGCATACAGCTCAACATAA+CGG 0.615688 4.4:-35210939 None:intergenic
AGTAGACTCAGAGTATCTCA+AGG 0.616880 4.4:+35207159 MS.gene057684:CDS
TCAGAGGGTCCTCTGTCCAA+GGG 0.622882 4.4:-35210650 None:intergenic
CCAGGAACAAAGTTGACTGT+GGG 0.625811 4.4:-35210110 None:intergenic
TTACGCTAAGCGAAGCATGA+GGG 0.626450 4.4:-35207239 None:intergenic
ACCGAGGATCACCACTGCAG+CGG 0.626779 4.4:-35211695 None:intergenic
TCCAGGAACAAAGTTGACTG+TGG 0.628167 4.4:-35210111 None:intergenic
AGATATTGTTGCACTGTCTG+GGG 0.639389 4.4:+35210502 MS.gene057684:CDS
TTATGTTGAGCTGTATGCGA+AGG 0.641815 4.4:+35210942 MS.gene057684:CDS
TGTTGCAGTTGAGGTTACTG+GGG 0.642422 4.4:+35210085 MS.gene057684:CDS
TGTCGTCACAGAGGAAGTGA+AGG 0.644307 4.4:+35207630 MS.gene057684:intron
CTTACGCTAAGCGAAGCATG+AGG 0.649786 4.4:-35207240 None:intergenic
AGTTGTAGCTGCCGCTGCAG+TGG 0.652303 4.4:+35211684 MS.gene057684:CDS
GCTTAAACTTCCAACAGACA+GGG 0.655046 4.4:+35210891 MS.gene057684:CDS
GTTGCAGTTGAGGTTACTGG+GGG 0.656351 4.4:+35210086 MS.gene057684:CDS
ACTCTGAGTCTACTACTACC+GGG 0.677019 4.4:-35207150 None:intergenic
TAATGGTTCTATTCGGAACG+AGG 0.677025 4.4:+35207422 MS.gene057684:CDS
GAGTTTCATACAAGTAACCG+AGG 0.700364 4.4:-35211711 None:intergenic
GATGCAAAGACCAAGACCGG+TGG 0.716515 4.4:+35207396 MS.gene057684:CDS
AAGTATGTACCAGAGATGGG+CGG 0.726843 4.4:+35210228 MS.gene057684:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATAAAAATAAAATAT+TGG - chr4.4:35210777-35210796 None:intergenic 0.0%
!! AAAAATAAAAATAAAATATT+GGG - chr4.4:35210776-35210795 None:intergenic 0.0%
!!! TTATTTTTTAATTTTTATTT+TGG + chr4.4:35210788-35210807 MS.gene057684:intron 0.0%
!! AATAATAAAAAGATATAGAA+AGG - chr4.4:35210547-35210566 None:intergenic 10.0%
!! AATTATTATAGTTAATAGTT+CGG - chr4.4:35208119-35208138 None:intergenic 10.0%
!! GAAAATAAAATAAGAATTTA+TGG - chr4.4:35210584-35210603 None:intergenic 10.0%
!! TATTAACTATAATAATTGAA+TGG + chr4.4:35208122-35208141 MS.gene057684:intron 10.0%
!!! AAAAGTAAATTTTGTATATT+TGG + chr4.4:35208548-35208567 MS.gene057684:intron 10.0%
!!! AAATTTAATCTTTAAAAATC+TGG + chr4.4:35208350-35208369 MS.gene057684:intron 10.0%
!!! AATATTTTTATGATTTTTTG+GGG - chr4.4:35208197-35208216 None:intergenic 10.0%
!!! AGATTTTTTTAAAAAAATTC+TGG - chr4.4:35208680-35208699 None:intergenic 10.0%
!!! AGATTTTTTTTAAAAAATTC+AGG + chr4.4:35208395-35208414 MS.gene057684:intron 10.0%
!!! AGATTTTTTTTAAATAATTC+TGG + chr4.4:35208323-35208342 MS.gene057684:intron 10.0%
!!! ATATTTTTATGATTTTTTTG+GGG + chr4.4:35208816-35208835 MS.gene057684:intron 10.0%
!!! GAATATTTTTATGATTTTTT+GGG - chr4.4:35208833-35208814 None:intergenic 10.0%
!!! GAATATTTTTATGATTTTTT+TGG + chr4.4:35208814-35208833 MS.gene057684:intron 10.0%
!!! TGAATATTTTTATGATTTTT+TGG - chr4.4:35208832-35208813 None:intergenic 10.0%
!!! TTTCGATTTTTTAAATTTTT+GGG + chr4.4:35208782-35208801 MS.gene057684:intron 10.0%
!!! TTTTCGATTTTTTAAATTTT+TGG + chr4.4:35208781-35208800 MS.gene057684:intron 10.0%
!! TACTATATATGAAAATCAAA+CGG - chr4.4:35209757-35209776 None:intergenic 15.0%
!! TTAAATTGAATAGAATAGAA+TGG - chr4.4:35207521-35207540 None:intergenic 15.0%
!! TTTCAAAATACAAAAAAATC+TGG + chr4.4:35208488-35208507 MS.gene057684:intron 15.0%
!! TTTCATAACTATCAAAATTT+AGG - chr4.4:35209622-35209641 None:intergenic 15.0%
!!! AGATTCATTTAATTTAATGA+TGG - chr4.4:35211486-35211505 None:intergenic 15.0%
!!! TATATCCAGATTTTAAAAAA+AGG + chr4.4:35208298-35208317 MS.gene057684:intron 15.0%
!!! TGGATACAAATTTTAAAAAA+AGG + chr4.4:35208370-35208389 MS.gene057684:intron 15.0%
!!! TGGATACAAATTTTAAAAAA+AGG - chr4.4:35208389-35208370 None:intergenic 15.0%
!!! TGGATACAAATTTTAAAAAT+AGG + chr4.4:35208442-35208461 MS.gene057684:intron 15.0%
!! ACATATAAAGTGATTAAATC+CGG + chr4.4:35209889-35209908 MS.gene057684:intron 20.0%
!! ATAACTAATATTGTAACGAA+AGG - chr4.4:35210158-35210177 None:intergenic 20.0%
!! ATATTGACAAAGATATTTAG+CGG - chr4.4:35210838-35210857 None:intergenic 20.0%
!! ATTATATTATGCCTTGAATT+AGG + chr4.4:35209275-35209294 MS.gene057684:intron 20.0%
!! TAAATATCTTTGTCAATATC+AGG + chr4.4:35210839-35210858 MS.gene057684:intron 20.0%
!! TAGTATGAATATCATATCAT+TGG + chr4.4:35207576-35207595 MS.gene057684:intron 20.0%
!! TGTTATTGTAGTATTCAATT+AGG - chr4.4:35209010-35209029 None:intergenic 20.0%
!!! ATTTTATTTTCTGTGTTTCA+AGG + chr4.4:35210593-35210612 MS.gene057684:intron 20.0%
!!! TTTGTATCCAGATTTTTAAA+AGG - chr4.4:35208662-35208643 None:intergenic 20.0%
!!! TTTTATTTTCTGTGTTTCAA+GGG + chr4.4:35210594-35210613 MS.gene057684:intron 20.0%
!!! TTTTTAGCAAAACAGAAAAT+TGG - chr4.4:35211407-35211426 None:intergenic 20.0%
! AAACAAGAAAACTCTTAGAA+AGG - chr4.4:35207605-35207624 None:intergenic 25.0%
! AATTATTTATCACTCATGCA+GGG + chr4.4:35209941-35209960 MS.gene057684:intron 25.0%
! ACCTTAATAGTTGTAACATA+AGG - chr4.4:35211307-35211326 None:intergenic 25.0%
! AGACACTTACAAAGTAATTA+AGG - chr4.4:35209831-35209850 None:intergenic 25.0%
! ATATTAAGTAAGAAAGCTGT+TGG - chr4.4:35211227-35211246 None:intergenic 25.0%
! ATGGACTTATAAAATGCTAT+TGG - chr4.4:35211053-35211072 None:intergenic 25.0%
! GAAATAAAGAGTTCAGAAAA+TGG - chr4.4:35209369-35209388 None:intergenic 25.0%
! GACACTTACAAAGTAATTAA+GGG - chr4.4:35209830-35209849 None:intergenic 25.0%
! TAATCGAAGAAAATCAATAG+TGG + chr4.4:35211428-35211447 MS.gene057684:intron 25.0%
! TAGAAGACAATTTCTTAAAG+AGG - chr4.4:35209141-35209160 None:intergenic 25.0%
! TATAAACATGTCAATGCTAT+TGG + chr4.4:35210427-35210446 MS.gene057684:intron 25.0%
! TCCTTATGTTACAACTATTA+AGG + chr4.4:35211303-35211322 MS.gene057684:intron 25.0%
! TGAAACTGAATCTCATTATT+AGG + chr4.4:35207993-35208012 MS.gene057684:intron 25.0%
! TGAAATAGAACTACATTTCT+TGG + chr4.4:35209560-35209579 MS.gene057684:intron 25.0%
! TGTTCTATTCAATCATTTAC+AGG + chr4.4:35209183-35209202 MS.gene057684:intron 25.0%
!! AAAATTGGCATGAATGTTTT+GGG - chr4.4:35211392-35211411 None:intergenic 25.0%
!! AAAATTTGTTTAAGGGAACA+AGG - chr4.4:35209460-35209479 None:intergenic 25.0%
!! CTTAATTTTGTTGATGTGTA+GGG - chr4.4:35210374-35210393 None:intergenic 25.0%
!! TATTGGATCAATCTTTTGAT+TGG + chr4.4:35211095-35211114 MS.gene057684:intron 25.0%
!! TCTTAATTTTGTTGATGTGT+AGG - chr4.4:35210375-35210394 None:intergenic 25.0%
!! TGTTTCTAAATTATTGTCAG+TGG + chr4.4:35210273-35210292 MS.gene057684:intron 25.0%
!! TTGTTCCCTTAAACAAATTT+TGG + chr4.4:35209459-35209478 MS.gene057684:intron 25.0%
!!! AAGAAAGCTATTGATTTTTG+CGG + chr4.4:35207477-35207496 MS.gene057684:CDS 25.0%
!!! AATCTGACCTTTTAAAAATC+TGG + chr4.4:35208576-35208595 MS.gene057684:intron 25.0%
!!! AATTTTTTTGCTTTACTACG+AGG + chr4.4:35210724-35210743 MS.gene057684:intron 25.0%
!!! TCTGACCTTTTTTTAAAATC+TGG - chr4.4:35208306-35208325 None:intergenic 25.0%
!!! TGCATATCTTGTTTTATACA+AGG - chr4.4:35209971-35209990 None:intergenic 25.0%
AACTGAATCTCATTATTAGG+TGG + chr4.4:35207996-35208015 MS.gene057684:intron 30.0%
AATCACCTTATCCTAATTCA+AGG - chr4.4:35209289-35209308 None:intergenic 30.0%
AATTAGAGAATGACAAGTTC+AGG - chr4.4:35210186-35210205 None:intergenic 30.0%
ACATATTGAAATAGAGAGGA+AGG + chr4.4:35209913-35209932 MS.gene057684:intron 30.0%
AGAAAAGAAAATCCTTTCAC+AGG - chr4.4:35210344-35210363 None:intergenic 30.0%
ATGAGTTATCAAACTTCAGA+GGG - chr4.4:35210668-35210687 None:intergenic 30.0%
CACAATTGACAAAATATAGG+GGG - chr4.4:35208164-35208183 None:intergenic 30.0%
CCATACGATAAAAGATATCA+CGG - chr4.4:35210469-35210488 None:intergenic 30.0%
CGCACAATTGACAAAATATA+GGG - chr4.4:35208166-35208185 None:intergenic 30.0%
CTCTCTATTTCAATATGTAC+CGG - chr4.4:35209911-35209930 None:intergenic 30.0%
CTCTTGTTGCATTTGTTTAT+TGG + chr4.4:35211078-35211097 MS.gene057684:intron 30.0%
CTTCTACCCAAAGAAAAAAA+GGG + chr4.4:35209155-35209174 MS.gene057684:intron 30.0%
GAATTATTTATCACTCATGC+AGG + chr4.4:35209940-35209959 MS.gene057684:intron 30.0%
GCACAATTGACAAAATATAG+GGG - chr4.4:35208165-35208184 None:intergenic 30.0%
GCACTTGAACACAAAATTAT+TGG - chr4.4:35207740-35207759 None:intergenic 30.0%
GGTAAATAATCACCTGATAA+AGG - chr4.4:35207684-35207703 None:intergenic 30.0%
TATGAGTTATCAAACTTCAG+AGG - chr4.4:35210669-35210688 None:intergenic 30.0%
TATTCAATCATTTACAGGCT+TGG + chr4.4:35209188-35209207 MS.gene057684:intron 30.0%
TCGCACAATTGACAAAATAT+AGG - chr4.4:35208167-35208186 None:intergenic 30.0%
TCTGTGATAAACCATTTGAA+GGG + chr4.4:35209311-35209330 MS.gene057684:intron 30.0%
TCTTACGTTCGTTAATTTCA+CGG + chr4.4:35207319-35207338 MS.gene057684:intron 30.0%
TCTTCTACCCAAAGAAAAAA+AGG + chr4.4:35209154-35209173 MS.gene057684:intron 30.0%
TGTATGAAACTCACAAAAGA+GGG + chr4.4:35211722-35211741 MS.gene057684:CDS 30.0%
TTACATGTATCCAAACTTAG+TGG + chr4.4:35209704-35209723 MS.gene057684:intron 30.0%
TTATGCCTTGAATTAGGATA+AGG + chr4.4:35209281-35209300 MS.gene057684:intron 30.0%
TTCTGTGATAAACCATTTGA+AGG + chr4.4:35209310-35209329 MS.gene057684:intron 30.0%
TTGTATGAAACTCACAAAAG+AGG + chr4.4:35211721-35211740 MS.gene057684:CDS 30.0%
TTTACATAACAAGTGAGTGA+AGG - chr4.4:35207705-35207724 None:intergenic 30.0%
TTTGCTAGAAGTTGTAGAAT+GGG + chr4.4:35207761-35207780 MS.gene057684:intron 30.0%
! AAATGCAACAAGAGTACAAA+TGG - chr4.4:35211072-35211091 None:intergenic 30.0%
! ACACAAAGTATTACAGCATT+AGG - chr4.4:35209222-35209241 None:intergenic 30.0%
! ACGTTGCCAAAATTTGTTTA+AGG - chr4.4:35209468-35209487 None:intergenic 30.0%
! CGATTTTGTTAATCTGATTC+AGG + chr4.4:35207352-35207371 MS.gene057684:intron 30.0%
! CGTGATATCTTTTATCGTAT+GGG + chr4.4:35210467-35210486 MS.gene057684:CDS 30.0%
! CGTTGCCAAAATTTGTTTAA+GGG - chr4.4:35209467-35209486 None:intergenic 30.0%
! GAAAATTGGCATGAATGTTT+TGG - chr4.4:35211393-35211412 None:intergenic 30.0%
! TATGAAATCAGTTTTCAGCA+GGG - chr4.4:35211006-35211025 None:intergenic 30.0%
! TCTAATTTTCTGTGTCATGT+AGG + chr4.4:35210199-35210218 MS.gene057684:intron 30.0%
! TGTCAATATCAGGATACTTT+TGG + chr4.4:35210849-35210868 MS.gene057684:intron 30.0%
! TTATGAAATCAGTTTTCAGC+AGG - chr4.4:35211007-35211026 None:intergenic 30.0%
! TTTTGCTAGAAGTTGTAGAA+TGG + chr4.4:35207760-35207779 MS.gene057684:intron 30.0%
! TTTTGTTAATCTGATTCAGG+TGG + chr4.4:35207355-35207374 MS.gene057684:intron 30.0%
!! TTTATTATTTGCTGTGATCG+CGG + chr4.4:35210558-35210577 MS.gene057684:intron 30.0%
!! TTTTCTCATGGTGCTAATAA+TGG + chr4.4:35207450-35207469 MS.gene057684:CDS 30.0%
!!! AACCATCCCTTTTTTTCTTT+GGG - chr4.4:35209164-35209183 None:intergenic 30.0%
AAAGAGGTAAACAAGCACAA+GGG - chr4.4:35209125-35209144 None:intergenic 35.0%
AAAGATATTGTTGCACTGTC+TGG + chr4.4:35210500-35210519 MS.gene057684:CDS 35.0%
AACATGTCAATGCTATTGGT+AGG + chr4.4:35210431-35210450 MS.gene057684:intron 35.0%
AAGATATTGTTGCACTGTCT+GGG + chr4.4:35210501-35210520 MS.gene057684:CDS 35.0%
AATCAGAAAGGGGAAAACTA+TGG + chr4.4:35208844-35208863 MS.gene057684:intron 35.0%
AGACCAACGTATTAAGTAGT+TGG - chr4.4:35211278-35211297 None:intergenic 35.0%
ATACTTTGTGTGAGGTTTCA+AGG + chr4.4:35209231-35209250 MS.gene057684:intron 35.0%
ATCAGAAAGGGGAAAACTAT+GGG + chr4.4:35208845-35208864 MS.gene057684:intron 35.0%
ATCAGAATCAAGACAGTGAT+CGG + chr4.4:35209851-35209870 MS.gene057684:intron 35.0%
ATGCTGTAATACTTTGTGTG+AGG + chr4.4:35209223-35209242 MS.gene057684:intron 35.0%
CACAATTGGCAAAATATAGG+GGG + chr4.4:35208908-35208927 MS.gene057684:intron 35.0%
CATAAGAAACTTTCAGAGCT+TGG + chr4.4:35211595-35211614 MS.gene057684:CDS 35.0%
CGCACAATTGGCAAAATATA+GGG + chr4.4:35208906-35208925 MS.gene057684:intron 35.0%
CGGTACATATTGAAATAGAG+AGG + chr4.4:35209909-35209928 MS.gene057684:intron 35.0%
CTGTGATAAACCATTTGAAG+GGG + chr4.4:35209312-35209331 MS.gene057684:intron 35.0%
GAGATATTAGCCACTAAGTT+TGG - chr4.4:35209717-35209736 None:intergenic 35.0%
GCAAACAATGTAGCAGAAAT+AGG - chr4.4:35207879-35207898 None:intergenic 35.0%
GCACAATTGGCAAAATATAG+GGG + chr4.4:35208907-35208926 MS.gene057684:intron 35.0%
TAAAGAGGTAAACAAGCACA+AGG - chr4.4:35209126-35209145 None:intergenic 35.0%
TACAACAGTTTCGTTCACTT+GGG + chr4.4:35210296-35210315 MS.gene057684:intron 35.0%
TACCCAAAGAAAAAAAGGGA+TGG + chr4.4:35209159-35209178 MS.gene057684:intron 35.0%
TATTGAAATAGAGAGGAAGG+AGG + chr4.4:35209916-35209935 MS.gene057684:intron 35.0%
TCGCACAATTGGCAAAATAT+AGG + chr4.4:35208905-35208924 MS.gene057684:intron 35.0%
TCTAATTCTAATTCTCCCTC+TGG + chr4.4:35211533-35211552 MS.gene057684:intron 35.0%
TGCTATTGGAAACCCATATT+TGG - chr4.4:35211039-35211058 None:intergenic 35.0%
TGGAACTCATTGCATTAAGT+AGG + chr4.4:35211115-35211134 MS.gene057684:intron 35.0%
TGTGATAAACCATTTGAAGG+GGG + chr4.4:35209313-35209332 MS.gene057684:intron 35.0%
TTGCTAGAAGTTGTAGAATG+GGG + chr4.4:35207762-35207781 MS.gene057684:intron 35.0%
! AAATCGCTCGTTTGAAACAA+TGG + chr4.4:35208873-35208892 MS.gene057684:intron 35.0%
! AATCGCTCGTTTGAAACAAT+GGG + chr4.4:35208874-35208893 MS.gene057684:intron 35.0%
! AATCGCTCGTTTGAAACAAT+TGG + chr4.4:35208874-35208893 MS.gene057684:intron 35.0%
! AGGGCACTAATATAAGCAAA+GGG - chr4.4:35208056-35208075 None:intergenic 35.0%
! ATAAAGTGTCCTGCCAAATA+TGG + chr4.4:35211023-35211042 MS.gene057684:intron 35.0%
! ATCACGTTTTTGCCTAAGAA+AGG - chr4.4:35209541-35209560 None:intergenic 35.0%
! ATCGCTCGTTTGAAACAATT+GGG + chr4.4:35208875-35208894 MS.gene057684:intron 35.0%
! CAAAAGTATGTACCAGAGAT+GGG + chr4.4:35210225-35210244 MS.gene057684:CDS 35.0%
! CAGTGTCATTGAAATGATTG+AGG - chr4.4:35209495-35209514 None:intergenic 35.0%
! CCGTGATATCTTTTATCGTA+TGG + chr4.4:35210466-35210485 MS.gene057684:CDS 35.0%
! GGTTTTTGACAAAGTTGTCA+AGG + chr4.4:35209252-35209271 MS.gene057684:intron 35.0%
! TAAAGTGTCCTGCCAAATAT+GGG + chr4.4:35211024-35211043 MS.gene057684:intron 35.0%
! TCAAAAGTATGTACCAGAGA+TGG + chr4.4:35210224-35210243 MS.gene057684:CDS 35.0%
! TTTTTCCTTCCTTCCGATTT+CGG + chr4.4:35207294-35207313 MS.gene057684:intron 35.0%
!! CTTGGTAGCTTTATGAAATC+TGG + chr4.4:35209578-35209597 MS.gene057684:intron 35.0%
!!! ATTAGTTTTCCCCCTTCAAA+TGG - chr4.4:35209325-35209344 None:intergenic 35.0%
!!! CAACCATCCCTTTTTTTCTT+TGG - chr4.4:35209165-35209184 None:intergenic 35.0%
AACATCGTGATAATCGCAGA+TGG - chr4.4:35211192-35211211 None:intergenic 40.0%
AACGTATTAAGTAGTTGGCC+AGG - chr4.4:35211273-35211292 None:intergenic 40.0%
AATAGAACCATTAGGTCCAC+CGG - chr4.4:35207415-35207434 None:intergenic 40.0%
ACTACCAACAAGCCTTTCTT+AGG + chr4.4:35209526-35209545 MS.gene057684:intron 40.0%
ACTCTGGACACTCAAAACTT+TGG + chr4.4:35207900-35207919 MS.gene057684:intron 40.0%
AGATATGAGCTCTTTCTACC+TGG + chr4.4:35211252-35211271 MS.gene057684:intron 40.0%
AGATATTGTTGCACTGTCTG+GGG + chr4.4:35210502-35210521 MS.gene057684:CDS 40.0%
AGCTGTATGCGAAGGTAATT+GGG + chr4.4:35210950-35210969 MS.gene057684:intron 40.0%
AGGTCTGCATATGAGATCTT+AGG - chr4.4:35207664-35207683 None:intergenic 40.0%
ATTGGAAACCCATATTTGGC+AGG - chr4.4:35211035-35211054 None:intergenic 40.0%
CAACTTTGTTCCTGGAAGAA+GGG + chr4.4:35210118-35210137 MS.gene057684:CDS 40.0%
CGAACGTAAGAAACCGAAAT+CGG - chr4.4:35207310-35207329 None:intergenic 40.0%
CGGAAGGAAGGAAAAAAACA+AGG - chr4.4:35207290-35207309 None:intergenic 40.0%
CTCATATGCAGACCTTTATC+AGG + chr4.4:35207669-35207688 MS.gene057684:CDS 40.0%
CTCTGGACACTCAAAACTTT+GGG + chr4.4:35207901-35207920 MS.gene057684:intron 40.0%
CTGCGATTATCACGATGTTT+GGG + chr4.4:35211193-35211212 MS.gene057684:intron 40.0%
GAGTTTCATACAAGTAACCG+AGG - chr4.4:35211714-35211733 None:intergenic 40.0%
GCTTAAACTTCCAACAGACA+GGG + chr4.4:35210891-35210910 MS.gene057684:CDS 40.0%
GTACAACAGTTTCGTTCACT+TGG + chr4.4:35210295-35210314 MS.gene057684:intron 40.0%
GTCATTGAAATGATTGAGGC+AGG - chr4.4:35209491-35209510 None:intergenic 40.0%
TACTCTGAGTCTACTACTAC+CGG - chr4.4:35207154-35207173 None:intergenic 40.0%
TATGATGCAAAGACCAAGAC+CGG + chr4.4:35207393-35207412 MS.gene057684:CDS 40.0%
TCAACATAACGGCGAAATTC+AGG - chr4.4:35210931-35210950 None:intergenic 40.0%
TCAACTTTGTTCCTGGAAGA+AGG + chr4.4:35210117-35210136 MS.gene057684:CDS 40.0%
TCAGAAAGGGGAAAACTATG+GGG + chr4.4:35208846-35208865 MS.gene057684:intron 40.0%
TCCAAAGCACAATGCTTACT+GGG - chr4.4:35211158-35211177 None:intergenic 40.0%
TCGCATACAGCTCAACATAA+CGG - chr4.4:35210942-35210961 None:intergenic 40.0%
TCGGAATTGTCATGCATCAT+GGG - chr4.4:35208100-35208119 None:intergenic 40.0%
TCGTTCCGAATAGAACCATT+AGG - chr4.4:35207423-35207442 None:intergenic 40.0%
TCTGCGATTATCACGATGTT+TGG + chr4.4:35211192-35211211 MS.gene057684:intron 40.0%
TGCTTAAACTTCCAACAGAC+AGG + chr4.4:35210890-35210909 MS.gene057684:CDS 40.0%
TGGCCAACTACTTAATACGT+TGG + chr4.4:35211272-35211291 MS.gene057684:intron 40.0%
TTATGTTGAGCTGTATGCGA+AGG + chr4.4:35210942-35210961 MS.gene057684:CDS 40.0%
TTCGGAATTGTCATGCATCA+TGG - chr4.4:35208101-35208120 None:intergenic 40.0%
TTGGGGTGCAAAATCAGAAA+GGG + chr4.4:35208833-35208852 MS.gene057684:intron 40.0%
TTGTTGCAGTTGAGGTTACT+GGG + chr4.4:35210084-35210103 MS.gene057684:CDS 40.0%
TTTGCCTAAGAAAGGCTTGT+TGG - chr4.4:35209533-35209552 None:intergenic 40.0%
! AACACACCTTGTTTAGCATC+AGG - chr4.4:35210257-35210276 None:intergenic 40.0%
! AACGAGGAAGAGTTTTCTCA+TGG + chr4.4:35207438-35207457 MS.gene057684:CDS 40.0%
! AGTAGACTCAGAGTATCTCA+AGG + chr4.4:35207159-35207178 MS.gene057684:CDS 40.0%
! ATCGCTCGTTTGAAACAATG+GGG + chr4.4:35208935-35208954 MS.gene057684:intron 40.0%
! CAGGGCACTAATATAAGCAA+AGG - chr4.4:35208057-35208076 None:intergenic 40.0%
! GTGGACCTAATGGTTCTATT+CGG + chr4.4:35207415-35207434 MS.gene057684:CDS 40.0%
! GTTTTCTTATGTCGTCACAG+AGG + chr4.4:35207621-35207640 MS.gene057684:intron 40.0%
! GTTTTTCGTGTAGTGTTAGC+TGG + chr4.4:35207940-35207959 MS.gene057684:intron 40.0%
! TAATGGTTCTATTCGGAACG+AGG + chr4.4:35207422-35207441 MS.gene057684:CDS 40.0%
! TTTGGGGTGCAAAATCAGAA+AGG + chr4.4:35208832-35208851 MS.gene057684:intron 40.0%
!! TTGGCATGAATGTTTTGGGT+AGG - chr4.4:35211388-35211407 None:intergenic 40.0%
AAGCACAATGCTTACTGGGA+AGG - chr4.4:35211154-35211173 None:intergenic 45.0%
AAGTATGTACCAGAGATGGG+CGG + chr4.4:35210228-35210247 MS.gene057684:CDS 45.0%
ACTCTGAGTCTACTACTACC+GGG - chr4.4:35207153-35207172 None:intergenic 45.0%
AGAAACCGAAATCGGAAGGA+AGG - chr4.4:35207302-35207321 None:intergenic 45.0%
ATTCTAATTCTCCCTCTGGC+AGG + chr4.4:35211537-35211556 MS.gene057684:intron 45.0%
CATGTAATCTATGACGCAGC+TGG - chr4.4:35210014-35210033 None:intergenic 45.0%
CCAGGAACAAAGTTGACTGT+GGG - chr4.4:35210113-35210132 None:intergenic 45.0%
CGATTATCACGATGTTTGGG+TGG + chr4.4:35211196-35211215 MS.gene057684:intron 45.0%
CGTAAGAAACCGAAATCGGA+AGG - chr4.4:35207306-35207325 None:intergenic 45.0%
CTCCAAAGCACAATGCTTAC+TGG - chr4.4:35211159-35211178 None:intergenic 45.0%
GAAAATCCTTTCACAGGCAG+TGG - chr4.4:35210338-35210357 None:intergenic 45.0%
GAAAGAGCTGGTGTGTAACA+GGG - chr4.4:35208075-35208094 None:intergenic 45.0%
GAATTGTCATGCATCATGGG+AGG - chr4.4:35208097-35208116 None:intergenic 45.0%
GAGCTGTATGCGAAGGTAAT+TGG + chr4.4:35210949-35210968 MS.gene057684:intron 45.0%
GTTGTTGCAGTTGAGGTTAC+TGG + chr4.4:35210083-35210102 MS.gene057684:CDS 45.0%
TCATGCTTCGCTTAGCGTAA+GGG + chr4.4:35207242-35207261 MS.gene057684:intron 45.0%
TCCAATAAAGCCCTGTCTGT+TGG - chr4.4:35210904-35210923 None:intergenic 45.0%
TCCAGGAACAAAGTTGACTG+TGG - chr4.4:35210114-35210133 None:intergenic 45.0%
TGCTACATTGTTTGCGACTC+TGG + chr4.4:35207884-35207903 MS.gene057684:intron 45.0%
TGGGGTGCAAAATCAGAAAG+GGG + chr4.4:35208834-35208853 MS.gene057684:intron 45.0%
TGGGTGCAAAATCGCACAAT+TGG + chr4.4:35208894-35208913 MS.gene057684:intron 45.0%
TGTTGCAGTTGAGGTTACTG+GGG + chr4.4:35210085-35210104 MS.gene057684:CDS 45.0%
TTACGCTAAGCGAAGCATGA+GGG - chr4.4:35207242-35207261 None:intergenic 45.0%
! TCCAACAGACAGGGCTTTAT+TGG + chr4.4:35210900-35210919 MS.gene057684:CDS 45.0%
! TCCCAGTAAGCATTGTGCTT+TGG + chr4.4:35211154-35211173 MS.gene057684:intron 45.0%
!! AAAAGCGCTTTGTGCCAGTA+CGG - chr4.4:35211662-35211681 None:intergenic 45.0%
!! GCTTGTTGGTAGTATGAAGC+AGG - chr4.4:35209519-35209538 None:intergenic 45.0%
!!! AAATTTAATTTTTAAAAATC+TGG + chr4.4:35208422-35208441 MS.gene057684:intron 5.0%
!!! AAATTTAATTTTTAAAAATC+TGG - chr4.4:35208441-35208422 None:intergenic 5.0%
!!! AATATTTTTATGATTTTTTT+GGG + chr4.4:35208815-35208834 MS.gene057684:intron 5.0%
!!! ATTTTCAAAATTTTAAAAAA+AGG - chr4.4:35208705-35208724 None:intergenic 5.0%
AGAGCACATCCAGAGAGATC+CGG + chr4.4:35210618-35210637 MS.gene057684:CDS 50.0%
AGCTTACCACTGCCTGTGAA+AGG + chr4.4:35210329-35210348 MS.gene057684:intron 50.0%
CAGTTTCGTTCACTTGGGCA+TGG + chr4.4:35210301-35210320 MS.gene057684:intron 50.0%
CCCACAGTCAACTTTGTTCC+TGG + chr4.4:35210110-35210129 MS.gene057684:CDS 50.0%
CGGCTTCCTGATGCTAAACA+AGG + chr4.4:35210248-35210267 MS.gene057684:CDS 50.0%
CTCATGCTTCGCTTAGCGTA+AGG + chr4.4:35207241-35207260 MS.gene057684:intron 50.0%
CTTACGCTAAGCGAAGCATG+AGG - chr4.4:35207243-35207262 None:intergenic 50.0%
GCACAACATACCCTTCTTCC+AGG - chr4.4:35210131-35210150 None:intergenic 50.0%
GGAAAGAGCTGGTGTGTAAC+AGG - chr4.4:35208076-35208095 None:intergenic 50.0%
GGGGTGCAAAATCGCACAAT+TGG + chr4.4:35208954-35208973 MS.gene057684:intron 50.0%
GTTGCAGTTGAGGTTACTGG+GGG + chr4.4:35210086-35210105 MS.gene057684:CDS 50.0%
TACGCTAAGCGAAGCATGAG+GGG - chr4.4:35207241-35207260 None:intergenic 50.0%
TCCTTTGTGCTTCCAGCTTG+CGG + chr4.4:35210058-35210077 MS.gene057684:intron 50.0%
TGTCGTCACAGAGGAAGTGA+AGG + chr4.4:35207630-35207649 MS.gene057684:intron 50.0%
TTCTGTTGGCGATGAGAGCA+CGG - chr4.4:35207210-35207229 None:intergenic 50.0%
! CAAGCTGGAAGCACAAAGGA+AGG - chr4.4:35210058-35210077 None:intergenic 50.0%
! TGGCTTTGCACCAAGCTCAA+AGG + chr4.4:35211615-35211634 MS.gene057684:CDS 50.0%
!! GTACTGGCACAAAGCGCTTT+TGG + chr4.4:35211661-35211680 MS.gene057684:CDS 50.0%
ACCAAGACCGGTGGACCTAA+TGG + chr4.4:35207405-35207424 MS.gene057684:CDS 55.0%
ACCATTAGGTCCACCGGTCT+TGG - chr4.4:35207409-35207428 None:intergenic 55.0%
ATGCATCCTCATCCTGCCAG+AGG - chr4.4:35211552-35211571 None:intergenic 55.0%
ATTCTCCCTCTGGCAGGATG+AGG + chr4.4:35211543-35211562 MS.gene057684:intron 55.0%
CCAGAGAGATCCGGGTTTGA+TGG + chr4.4:35210627-35210646 MS.gene057684:CDS 55.0%
CCATCAAACCCGGATCTCTC+TGG - chr4.4:35210630-35210649 None:intergenic 55.0%
CCTTTGTGCTTCCAGCTTGC+GGG + chr4.4:35210059-35210078 MS.gene057684:intron 55.0%
CTCAAAGGCAACTGCTCCTG+TGG + chr4.4:35211630-35211649 MS.gene057684:CDS 55.0%
GAGCACATCCAGAGAGATCC+GGG + chr4.4:35210619-35210638 MS.gene057684:CDS 55.0%
GATGCAAAGACCAAGACCGG+TGG + chr4.4:35207396-35207415 MS.gene057684:CDS 55.0%
GCATCATGGGAGGAAAGAGC+TGG - chr4.4:35208087-35208106 None:intergenic 55.0%
GGAGCAGTTGCCTTTGAGCT+TGG - chr4.4:35211628-35211647 None:intergenic 55.0%
TCAGAGGGTCCTCTGTCCAA+GGG - chr4.4:35210653-35210672 None:intergenic 55.0%
TCCTGTGGATGCAACCGTAC+TGG + chr4.4:35211645-35211664 MS.gene057684:CDS 55.0%
TGATTCAGGTGGCACGATGC+TGG + chr4.4:35207366-35207385 MS.gene057684:intron 55.0%
TGCATCCTCATCCTGCCAGA+GGG - chr4.4:35211551-35211570 None:intergenic 55.0%
TGTCCAAGGGCCATCAAACC+CGG - chr4.4:35210640-35210659 None:intergenic 55.0%
TTCAGAGGGTCCTCTGTCCA+AGG - chr4.4:35210654-35210673 None:intergenic 55.0%
! GAGGGGAGCACAGTTTCTGT+TGG - chr4.4:35207224-35207243 None:intergenic 55.0%
! GTTTGATGGCCCTTGGACAG+AGG + chr4.4:35210641-35210660 MS.gene057684:CDS 55.0%
!! TGCGGGTGTTGTTGCAGTTG+AGG + chr4.4:35210076-35210095 MS.gene057684:CDS 55.0%
ACCGAGGATCACCACTGCAG+CGG - chr4.4:35211698-35211717 None:intergenic 60.0%
AGTTGTAGCTGCCGCTGCAG+TGG + chr4.4:35211684-35211703 MS.gene057684:CDS 60.0%
ATCAGGAAGCCGCCCATCTC+TGG - chr4.4:35210240-35210259 None:intergenic 60.0%
CTGCAACAACACCCGCAAGC+TGG - chr4.4:35210073-35210092 None:intergenic 60.0%
GCCAGTACGGTTGCATCCAC+AGG - chr4.4:35211649-35211668 None:intergenic 60.0%
! ACTGTCTGGGGCACATACGC+TGG + chr4.4:35210514-35210533 MS.gene057684:CDS 60.0%
! CCCGCAAGCTGGAAGCACAA+AGG - chr4.4:35210062-35210081 None:intergenic 60.0%
! GATCCGGGTTTGATGGCCCT+TGG + chr4.4:35210634-35210653 MS.gene057684:CDS 60.0%
GCCGCTGCAGTGGTGATCCT+CGG + chr4.4:35211694-35211713 MS.gene057684:CDS 65.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 35207142 35211750 35207142 ID=MS.gene057684
chr4.4 mRNA 35207142 35211750 35207142 ID=MS.gene057684.t1;Parent=MS.gene057684
chr4.4 exon 35207142 35207257 35207142 ID=MS.gene057684.t1.exon1;Parent=MS.gene057684.t1
chr4.4 CDS 35207142 35207257 35207142 ID=cds.MS.gene057684.t1;Parent=MS.gene057684.t1
chr4.4 exon 35207374 35207498 35207374 ID=MS.gene057684.t1.exon2;Parent=MS.gene057684.t1
chr4.4 CDS 35207374 35207498 35207374 ID=cds.MS.gene057684.t1;Parent=MS.gene057684.t1
chr4.4 exon 35207641 35207690 35207641 ID=MS.gene057684.t1.exon3;Parent=MS.gene057684.t1
chr4.4 CDS 35207641 35207690 35207641 ID=cds.MS.gene057684.t1;Parent=MS.gene057684.t1
chr4.4 exon 35210074 35210139 35210074 ID=MS.gene057684.t1.exon4;Parent=MS.gene057684.t1
chr4.4 CDS 35210074 35210139 35210074 ID=cds.MS.gene057684.t1;Parent=MS.gene057684.t1
chr4.4 exon 35210221 35210269 35210221 ID=MS.gene057684.t1.exon5;Parent=MS.gene057684.t1
chr4.4 CDS 35210221 35210269 35210221 ID=cds.MS.gene057684.t1;Parent=MS.gene057684.t1
chr4.4 exon 35210453 35210535 35210453 ID=MS.gene057684.t1.exon6;Parent=MS.gene057684.t1
chr4.4 CDS 35210453 35210535 35210453 ID=cds.MS.gene057684.t1;Parent=MS.gene057684.t1
chr4.4 exon 35210615 35210694 35210615 ID=MS.gene057684.t1.exon7;Parent=MS.gene057684.t1
chr4.4 CDS 35210615 35210694 35210615 ID=cds.MS.gene057684.t1;Parent=MS.gene057684.t1
chr4.4 exon 35210861 35210963 35210861 ID=MS.gene057684.t1.exon8;Parent=MS.gene057684.t1
chr4.4 CDS 35210861 35210963 35210861 ID=cds.MS.gene057684.t1;Parent=MS.gene057684.t1
chr4.4 exon 35211559 35211750 35211559 ID=MS.gene057684.t1.exon9;Parent=MS.gene057684.t1
chr4.4 CDS 35211559 35211750 35211559 ID=cds.MS.gene057684.t1;Parent=MS.gene057684.t1
Gene Sequence

>MS.gene057684

ATGGCGTTCCCGGTAGTAGTAGACTCAGAGTATCTCAAGGAAATCGAAAAAGCTCGTCGCGATCTCCGTGCTCTCATCGCCAACAGAAACTGTGCTCCCCTCATGCTTCGCTTAGCGTAAGGGATTTCTCTTCATCTTCACATTTCCTTGTTTTTTTCCTTCCTTCCGATTTCGGTTTCTTACGTTCGTTAATTTCACGGTCAACGCTTTCGATTTTGTTAATCTGATTCAGGTGGCACGATGCTGGAACTTATGATGCAAAGACCAAGACCGGTGGACCTAATGGTTCTATTCGGAACGAGGAAGAGTTTTCTCATGGTGCTAATAATGGATTGAAGAAAGCTATTGATTTTTGCGGTATTTATTTATATTATTACCATTCTATTCTATTCAATTTAATCAATTTCACTTTCACTTTTTTGTTGTTGTAAAACTAGTATGAATATCATATCATTGGTTTCCTTTCTAAGAGTTTTCTTGTTTTCTTATGTCGTCACAGAGGAAGTGAAGGCAAAACATCCTAAGATCTCATATGCAGACCTTTATCAGGTGATTATTTACCTTCACTCACTTGTTATGTAAATCTGCAATAAATCCAATAATTTTGTGTTCAAGTGCTTTTGCTAGAAGTTGTAGAATGGGGTCAATGACTTTCAATTTTGTCTCGAGTGTGTGCAACATGATTTTGATTACATAAATTTCTTTATGTTATGTCTATCGCGATTCGCTACACTCCTATTTCTGCTACATTGTTTGCGACTCTGGACACTCAAAACTTTGGGATTGCTGCTTTGCTTAGTTTTTCGTGTAGTGTTAGCTGGTATTAGTTTACGCAGTTCTTGTTTCTATTTTGAAACTGAATCTCATTATTAGGTGGATTGTATGAATATTGAAGTTACATACATAGCATGCCCTTTGCTTATATTAGTGCCCTGTTACACACCAGCTCTTTCCTCCCATGATGCATGACAATTCCGAACTATTAACTATAATAATTGAATGGCTTAATTGCACTTTTGCCCCCTATATTTTGTCAATTGTGCGATTTTGCACCCCAAAAAATCATAAAAATATTCAGTTTTTTTCAAAAAAATTTAAAAAATTAGAAAAAAAATCAGAAAATATAGTAATTGTTTTTAAAATCAGAAAAAAATCATATATCCAGATTTTAAAAAAAGGTCAGATTTTTTTTAAATAATTCTGGAAAAAAATTTAATCTTTAAAAATCTGGATACAAATTTTAAAAAAAGGACAGATTTTTTTTAAAAAATTCAGGAAAAAAATTTAATTTTTAAAAATCTGGATACAAATTTTAAAAATAGGTCAGATTTTTTTTAAAATTTAATTTTCAAAATACAAAAAAATCTGGATTTTTAAAAATTAAATTTAAAATTTGTAAATTTTCAAAAAGTAAATTTTGTATATTTGGAAAAAAATCTGACCTTTTAAAAATCTGGATACAAAAAAGTAAATTTTAAAAAAATCTGACCTTTTTTTAAAATTTGTATCCAGATTTTTAAAAATTAAATTTTTTTCCAGAATTTTTTTAAAAAAATCTGACCTTTTTTTAAAATTTTGAAAATTAAATTCCAGAATTTTTTTAAAAAAATCTGATTATATTTTCTGATTTTTTAAATTTTTTTCGATTTTTTAAATTTTTGGGAAAAAAACTGAATATTTTTATGATTTTTTTGGGGTGCAAAATCAGAAAGGGGAAAACTATGGGGTGCAAAATCGCTCGTTTGAAACAATTGGGTGCAAAATCGCACAATTGGCAAAATATAGGGTGCAAAATCGCTCGTTTGAAACAATGGGGTGCAAAATCGCACAATTGGCAAAATATAGGGGGTAAAAGTGCAATTAAGCCTAATTGAATACTACAATAACAAAGAGATTGACTTGCTTTGCTTAGTTAATCATCTCACTGTGTTGTTCTGTTTGTTTTTTTTATTCTTTTTATGATTATGTGTTGTTTTTTTTCCCTTGTGCTTGTTTACCTCTTTAAGAAATTGTCTTCTACCCAAAGAAAAAAAGGGATGGTTGTTCTATTCAATCATTTACAGGCTTGGTTATCTTGCCTAATGCTGTAATACTTTGTGTGAGGTTTCAAGGTTTTTGACAAAGTTGTCAAGGATTATATTATGCCTTGAATTAGGATAAGGTGATTATTCTGTGATAAACCATTTGAAGGGGGAAAACTAATTTGTTTGCTCTTTACAAACTTCCATTTTCTGAACTCTTTATTTCATTAGTTCAGTTGTTTTATGTCATTTTGAGAGAATATGCATTTGTAATATATGAAGATTACAACAGCACCTTGTTCCCTTAAACAAATTTTGGCAACGTCCTGCCTCAATCATTTCAATGACACTGACCTGCTTCATACTACCAACAAGCCTTTCTTAGGCAAAAACGTGATGAAATAGAACTACATTTCTTGGTAGCTTTATGAAATCTGGAGTAATTACAGAAGTACACCTAAATTTTGATAGTTATGAAATGTATATAAGTGAAGCTCAAGTTCTTGTGTTGAGTTTCAAGTTTTCTTTTGTTACTAGTAATTTACATGTATCCAAACTTAGTGGCTAATATCTCTACAATGAAGTTGAATGCCGTTTGATTTTCATATATAGTAATTTTAAAAATTTGTAAGTGTTTCGAATTTACTTTTGAAAATCGAAGATTCCCTTAATTACTTTGTAAGTGTCTATCAGAATCAAGACAGTGATCGGAGTTTCTTGCATGTCACATATAAAGTGATTAAATCCGGTACATATTGAAATAGAGAGGAAGGAGGAGAATTATTTATCACTCATGCAGGGCATGCCTTGTATAAAACAAGATATGCACTTGTTAGTGAAGAACTAAACCAGCTGCGTCATAGATTACATGAATATGAAATAACAATTATTTCCTTCCTTTGTGCTTCCAGCTTGCGGGTGTTGTTGCAGTTGAGGTTACTGGGGGTCCCACAGTCAACTTTGTTCCTGGAAGAAGGGTATGTTGTGCAATACCTTTCGTTACAATATTAGTTATGAAATCCTGAACTTGTCATTCTCTAATTTTCTGTGTCATGTAGGATTCAAAAGTATGTACCAGAGATGGGCGGCTTCCTGATGCTAAACAAGGTGTGTTTCTAAATTATTGTCAGTGGTACAACAGTTTCGTTCACTTGGGCATGGTAAATAGCTTACCACTGCCTGTGAAAGGATTTTCTTTTCTCTGAATTCCCTACACATCAACAAAATTAAGAAATAATAAGATTAAGACTGTTATATGAAAGCATATAAACATGTCAATGCTATTGGTAGGTGTGTCGCATCTCCGTGATATCTTTTATCGTATGGGCTTGACTGACAAAGATATTGTTGCACTGTCTGGGGCACATACGCTGGTGATTCTCCTTTCTATATCTTTTTATTATTTGCTGTGATCGCGGCCATAAATTCTTATTTTATTTTCTGTGTTTCAAGGGAAGAGCACATCCAGAGAGATCCGGGTTTGATGGCCCTTGGACAGAGGACCCTCTGAAGTTTGATAACTCATATTTTCAGTAAGACTTGCGTTGTGTGCATTATCATCAATTTTTTTGCTTTACTACGAGGACATTTGTAGATTTTCAGTTTTGCATCCCAATATTTTATTTTTATTTTTTAATTTTTATTTTGGATAAAGAGCTTGATTTTTTATTTACCGCTAAATATCTTTGTCAATATCAGGATACTTTTGGAAGAAGATTCTGCAGCTCTGCTTAAACTTCCAACAGACAGGGCTTTATTGGATGATCCTGAATTTCGCCGTTATGTTGAGCTGTATGCGAAGGTAATTGGGATTGTTTAATTAAAATAACATATACATAATCCCTGCTGAAAACTGATTTCATAAAGTGTCCTGCCAAATATGGGTTTCCAATAGCATTTTATAAGTCCATTTGTACTCTTGTTGCATTTGTTTATTGGATCAATCTTTTGATTGGAACTCATTGCATTAAGTAGGTTGATTAGTAGGTCCTTCCCAGTAAGCATTGTGCTTTGGAGTTTACTAATGCCATCTGCGATTATCACGATGTTTGGGTGGAAAAACCAACAGCTTTCTTACTTAATATGTGATAGATATGAGCTCTTTCTACCTGGCCAACTACTTAATACGTTGGTCTTGTTTTCCTTATGTTACAACTATTAAGGTTGAAGATCTACATTTAAACTAAATAACGTACTTATTAGATCATTTATATGTAGACTAACCTACCCAAAACATTCATGCCAATTTTCTGTTTTGCTAAAAAATAATCGAAGAAAATCAATAGTGGTTATTTGCGTCAAAGTTCTGAATTCTGTTGATCCATCATTAAATTAAATGAATCTGTCTGCTGTTTCATGTTTTTTCTTTCTTCTAATTCTAATTCTCCCTCTGGCAGGATGAGGATGCATTTTTTCGAGATTATGCTGAATCACATAAGAAACTTTCAGAGCTTGGCTTTGCACCAAGCTCAAAGGCAACTGCTCCTGTGGATGCAACCGTACTGGCACAAAGCGCTTTTGGAGTTGTAGCTGCCGCTGCAGTGGTGATCCTCGGTTACTTGTATGAAACTCACAAAAGAGGGAAGTAG

Protein sequence

>MS.gene057684.t1

MAFPVVVDSEYLKEIEKARRDLRALIANRNCAPLMLRLAWHDAGTYDAKTKTGGPNGSIRNEEEFSHGANNGLKKAIDFCEEVKAKHPKISYADLYQLAGVVAVEVTGGPTVNFVPGRRDSKVCTRDGRLPDAKQGVSHLRDIFYRMGLTDKDIVALSGAHTLGRAHPERSGFDGPWTEDPLKFDNSYFQILLEEDSAALLKLPTDRALLDDPEFRRYVELYAKDEDAFFRDYAESHKKLSELGFAPSSKATAPVDATVLAQSAFGVVAAAAVVILGYLYETHKRGK