Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063170.t1 | XP_003603902.1 | 96.1 | 285 | 11 | 0 | 1 | 285 | 1 | 285 | 4.50E-151 | 543.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063170.t1 | O65009 | 42.8 | 229 | 126 | 2 | 53 | 276 | 54 | 282 | 1.2e-51 | 204.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063170.t1 | G7J6J4 | 96.1 | 285 | 11 | 0 | 1 | 285 | 1 | 285 | 3.2e-151 | 543.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055777 | MS.gene063170 | 0.807008 | 6.24E-50 | -1.69E-46 |
| MS.gene06057 | MS.gene063170 | 0.806522 | 7.90E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063170.t1 | MTR_3g116410 | 96.842 | 285 | 9 | 0 | 1 | 285 | 1 | 285 | 0.0 | 575 |
| MS.gene063170.t1 | MTR_3g107830 | 83.083 | 266 | 34 | 2 | 21 | 285 | 10 | 265 | 2.33e-165 | 459 |
| MS.gene063170.t1 | MTR_4g069680 | 67.230 | 296 | 86 | 2 | 1 | 285 | 1 | 296 | 7.43e-142 | 401 |
| MS.gene063170.t1 | MTR_3g116380 | 46.128 | 297 | 131 | 4 | 7 | 275 | 7 | 302 | 5.99e-92 | 275 |
| MS.gene063170.t1 | MTR_3g116270 | 46.575 | 219 | 114 | 1 | 57 | 275 | 290 | 505 | 2.34e-69 | 223 |
| MS.gene063170.t1 | MTR_3g116320 | 46.119 | 219 | 115 | 1 | 57 | 275 | 472 | 687 | 1.75e-66 | 219 |
| MS.gene063170.t1 | MTR_4g069570 | 45.662 | 219 | 114 | 4 | 59 | 275 | 120 | 335 | 1.97e-65 | 208 |
| MS.gene063170.t1 | MTR_4g069550 | 46.903 | 226 | 115 | 4 | 59 | 282 | 247 | 469 | 3.03e-63 | 206 |
| MS.gene063170.t1 | MTR_4g069040 | 41.057 | 246 | 139 | 4 | 39 | 281 | 273 | 515 | 3.09e-63 | 207 |
| MS.gene063170.t1 | MTR_4g069520 | 40.074 | 272 | 148 | 5 | 16 | 282 | 468 | 729 | 6.16e-59 | 200 |
| MS.gene063170.t1 | MTR_4g069520 | 40.074 | 272 | 148 | 5 | 16 | 282 | 454 | 715 | 7.59e-59 | 199 |
| MS.gene063170.t1 | MTR_1g008500 | 43.304 | 224 | 122 | 4 | 54 | 276 | 166 | 385 | 3.44e-58 | 191 |
| MS.gene063170.t1 | MTR_6g086530 | 44.976 | 209 | 109 | 4 | 71 | 276 | 1 | 206 | 3.91e-57 | 182 |
| MS.gene063170.t1 | MTR_3g109490 | 41.850 | 227 | 124 | 5 | 53 | 276 | 101 | 322 | 1.11e-54 | 180 |
| MS.gene063170.t1 | MTR_1g008530 | 40.807 | 223 | 126 | 5 | 56 | 276 | 6 | 224 | 1.47e-52 | 171 |
| MS.gene063170.t1 | MTR_1g008590 | 40.179 | 224 | 127 | 5 | 54 | 276 | 108 | 325 | 1.71e-52 | 174 |
| MS.gene063170.t1 | MTR_0312s0030 | 39.732 | 224 | 128 | 5 | 54 | 276 | 108 | 325 | 1.36e-51 | 172 |
| MS.gene063170.t1 | MTR_1g007520 | 39.732 | 224 | 128 | 5 | 54 | 276 | 108 | 325 | 1.36e-51 | 172 |
| MS.gene063170.t1 | MTR_1g008510 | 41.256 | 223 | 123 | 5 | 55 | 276 | 111 | 326 | 5.45e-51 | 170 |
| MS.gene063170.t1 | MTR_1g008560 | 40.625 | 224 | 127 | 5 | 55 | 276 | 111 | 330 | 1.15e-50 | 170 |
| MS.gene063170.t1 | MTR_1g008470 | 39.640 | 222 | 128 | 4 | 55 | 276 | 85 | 300 | 5.55e-50 | 167 |
| MS.gene063170.t1 | MTR_1g008450 | 38.393 | 224 | 132 | 3 | 53 | 276 | 96 | 313 | 8.26e-48 | 162 |
| MS.gene063170.t1 | MTR_1g008460 | 39.189 | 222 | 126 | 4 | 55 | 276 | 85 | 297 | 1.18e-47 | 161 |
| MS.gene063170.t1 | MTR_1g008580 | 42.529 | 174 | 95 | 4 | 102 | 274 | 1 | 170 | 2.64e-42 | 143 |
| MS.gene063170.t1 | MTR_4g068420 | 44.521 | 146 | 60 | 3 | 139 | 282 | 1 | 127 | 1.22e-36 | 127 |
| MS.gene063170.t1 | MTR_8g064500 | 31.674 | 221 | 138 | 6 | 59 | 274 | 159 | 371 | 3.43e-29 | 114 |
| MS.gene063170.t1 | MTR_5g034320 | 31.982 | 222 | 136 | 7 | 59 | 274 | 415 | 627 | 6.02e-28 | 113 |
| MS.gene063170.t1 | MTR_8g064560 | 31.982 | 222 | 136 | 7 | 59 | 274 | 412 | 624 | 5.48e-27 | 110 |
| MS.gene063170.t1 | MTR_3g078090 | 31.507 | 219 | 141 | 6 | 59 | 274 | 413 | 625 | 1.06e-24 | 103 |
| MS.gene063170.t1 | MTR_8g064530 | 30.455 | 220 | 140 | 5 | 59 | 273 | 429 | 640 | 2.07e-24 | 103 |
| MS.gene063170.t1 | MTR_4g133840 | 32.680 | 153 | 98 | 4 | 123 | 273 | 37 | 186 | 1.19e-23 | 95.5 |
| MS.gene063170.t1 | MTR_8g046000 | 35.204 | 196 | 111 | 9 | 86 | 275 | 37 | 222 | 1.74e-20 | 88.2 |
| MS.gene063170.t1 | MTR_5g033340 | 28.899 | 218 | 148 | 5 | 58 | 273 | 165 | 377 | 6.18e-19 | 86.3 |
| MS.gene063170.t1 | MTR_5g033340 | 28.025 | 157 | 108 | 3 | 102 | 257 | 1 | 153 | 7.27e-13 | 68.6 |
| MS.gene063170.t1 | MTR_5g033350 | 29.834 | 181 | 121 | 4 | 95 | 273 | 22 | 198 | 8.44e-19 | 82.8 |
| MS.gene063170.t1 | MTR_8g445140 | 37.500 | 144 | 74 | 5 | 135 | 275 | 172 | 302 | 1.10e-17 | 81.6 |
| MS.gene063170.t1 | MTR_5g033330 | 28.440 | 218 | 149 | 5 | 58 | 273 | 404 | 616 | 3.72e-17 | 81.6 |
| MS.gene063170.t1 | MTR_5g033330 | 28.713 | 202 | 137 | 5 | 58 | 257 | 196 | 392 | 1.43e-14 | 73.9 |
| MS.gene063170.t1 | MTR_5g033330 | 29.697 | 165 | 110 | 4 | 95 | 257 | 24 | 184 | 6.68e-14 | 72.0 |
| MS.gene063170.t1 | MTR_2g081590 | 34.228 | 149 | 88 | 5 | 129 | 277 | 123 | 261 | 2.24e-16 | 77.4 |
| MS.gene063170.t1 | MTR_2g081610 | 34.722 | 144 | 84 | 5 | 134 | 277 | 128 | 261 | 3.74e-16 | 77.0 |
| MS.gene063170.t1 | MTR_8g045890 | 34.043 | 141 | 83 | 4 | 135 | 275 | 379 | 509 | 2.06e-15 | 76.3 |
| MS.gene063170.t1 | MTR_8g045890 | 34.043 | 141 | 83 | 4 | 135 | 275 | 301 | 431 | 2.07e-15 | 76.3 |
| MS.gene063170.t1 | MTR_8g045890 | 34.043 | 141 | 83 | 4 | 135 | 275 | 342 | 472 | 2.35e-15 | 76.3 |
| MS.gene063170.t1 | MTR_8g445170 | 34.043 | 141 | 83 | 4 | 135 | 275 | 253 | 383 | 2.63e-15 | 75.9 |
| MS.gene063170.t1 | MTR_8g075930 | 44.737 | 76 | 37 | 4 | 192 | 264 | 14 | 87 | 2.34e-14 | 67.4 |
| MS.gene063170.t1 | MTR_8g045880 | 32.432 | 148 | 90 | 4 | 128 | 275 | 177 | 314 | 2.71e-14 | 72.4 |
| MS.gene063170.t1 | MTR_8g045880 | 32.432 | 148 | 90 | 4 | 128 | 275 | 212 | 349 | 3.97e-14 | 72.0 |
| MS.gene063170.t1 | MTR_8g045880 | 32.432 | 148 | 90 | 4 | 128 | 275 | 214 | 351 | 4.28e-14 | 72.0 |
| MS.gene063170.t1 | MTR_1g045860 | 32.215 | 149 | 92 | 5 | 128 | 276 | 121 | 260 | 4.68e-14 | 70.9 |
| MS.gene063170.t1 | MTR_5g033360 | 25.346 | 217 | 139 | 5 | 58 | 273 | 26 | 220 | 8.25e-12 | 63.9 |
| MS.gene063170.t1 | MTR_2g081770 | 33.103 | 145 | 85 | 6 | 135 | 277 | 138 | 272 | 3.48e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063170.t1 | AT1G49320 | 38.790 | 281 | 160 | 5 | 1 | 276 | 7 | 280 | 1.93e-66 | 209 |
| MS.gene063170.t1 | AT5G25610 | 42.152 | 223 | 124 | 5 | 53 | 273 | 170 | 389 | 1.68e-51 | 174 |
| MS.gene063170.t1 | AT1G60390 | 30.631 | 222 | 137 | 6 | 59 | 273 | 409 | 620 | 2.49e-25 | 105 |
| MS.gene063170.t1 | AT1G70370 | 29.596 | 223 | 140 | 5 | 59 | 274 | 411 | 623 | 4.91e-23 | 99.0 |
| MS.gene063170.t1 | AT1G70370 | 29.596 | 223 | 140 | 5 | 59 | 274 | 411 | 623 | 4.91e-23 | 99.0 |
| MS.gene063170.t1 | AT1G23760 | 28.311 | 219 | 148 | 6 | 59 | 274 | 407 | 619 | 8.85e-22 | 95.5 |
Find 56 sgRNAs with CRISPR-Local
Find 71 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAACCTTGTGATTTCAATTT+AGG | 0.099086 | 3.2:+91917615 | None:intergenic |
| CATGTTTCATTTCAAGTTCT+TGG | 0.201295 | 3.2:-91917699 | MS.gene063170:CDS |
| ATTCTTCACTTTGAAAGATT+TGG | 0.265422 | 3.2:-91918264 | MS.gene063170:CDS |
| AACCTTGTGATTTCAATTTA+GGG | 0.289344 | 3.2:+91917616 | None:intergenic |
| TTGAAAAGTAACACTTGATT+TGG | 0.297099 | 3.2:+91917929 | None:intergenic |
| GAATTTACACAAAACATTCT+TGG | 0.298406 | 3.2:-91917993 | MS.gene063170:CDS |
| AAGTGATTCAGCTTCTTCTT+TGG | 0.321679 | 3.2:+91918175 | None:intergenic |
| AGTGATTCAGCTTCTTCTTT+GGG | 0.342654 | 3.2:+91918176 | None:intergenic |
| CTTCTTTGGGCCATAACTTA+GGG | 0.345605 | 3.2:+91918189 | None:intergenic |
| GAACTTAACCTCTCCTTTGA+TGG | 0.356006 | 3.2:+91918043 | None:intergenic |
| GTGTGACAAGCCACCATCTT+TGG | 0.368463 | 3.2:+91917867 | None:intergenic |
| TCCCAGCGGACAATTACATT+TGG | 0.373004 | 3.2:-91917641 | MS.gene063170:CDS |
| TCTTCTTTGGGCCATAACTT+AGG | 0.375370 | 3.2:+91918188 | None:intergenic |
| GAAGTTGATGGGTCTCTCTT+AGG | 0.380142 | 3.2:+91918212 | None:intergenic |
| CCCAGCGGACAATTACATTT+GGG | 0.389028 | 3.2:-91917640 | MS.gene063170:CDS |
| GGCTATGGTGGTTTGTCACT+TGG | 0.403171 | 3.2:-91917745 | MS.gene063170:CDS |
| TCATCTACTAGTAATCCTTC+TGG | 0.409210 | 3.2:-91918484 | MS.gene063170:intron |
| TTTCAACCAATTCCCTAGCT+TGG | 0.420546 | 3.2:+91918366 | None:intergenic |
| CATAACTTAGGGGAAGTTGA+TGG | 0.430077 | 3.2:+91918200 | None:intergenic |
| ACTTTGAAAGATTTGGAAGT+AGG | 0.431659 | 3.2:-91918257 | MS.gene063170:CDS |
| ATAGTCAAGAAAGTGAGAAT+AGG | 0.435139 | 3.2:-91917812 | MS.gene063170:CDS |
| TAAGGTGCTTTCCATTGCTA+TGG | 0.435162 | 3.2:+91918085 | None:intergenic |
| GAGAGTTGGTTTGATAAGAA+AGG | 0.441599 | 3.2:+91918152 | None:intergenic |
| TGGAGATAAGGTTGAGGCTA+TGG | 0.442985 | 3.2:-91917760 | MS.gene063170:CDS |
| GACTCATATGATTATGATGA+TGG | 0.452194 | 3.2:+91918312 | None:intergenic |
| TGGAGACCAAGCTAGGGAAT+TGG | 0.452353 | 3.2:-91918372 | MS.gene063170:CDS |
| CTTTCCATTGCTATGGCTTG+TGG | 0.462619 | 3.2:+91918092 | None:intergenic |
| TGACACACAGAAGAGCTTCC+TGG | 0.469514 | 3.2:+91917669 | None:intergenic |
| CATCAACTTCCCCTAAGTTA+TGG | 0.470154 | 3.2:-91918199 | MS.gene063170:CDS |
| TGTGCAAAGTTGCATAAGCT+TGG | 0.472166 | 3.2:+91917955 | None:intergenic |
| CAAGTTCTTGGTGTCACACC+AGG | 0.473983 | 3.2:-91917687 | MS.gene063170:CDS |
| TAATATTGATCCTTCACTAA+TGG | 0.474162 | 3.2:-91918288 | MS.gene063170:CDS |
| CCCAAATGTAATTGTCCGCT+GGG | 0.478272 | 3.2:+91917640 | None:intergenic |
| TAGTCAAGAAAGTGAGAATA+GGG | 0.482578 | 3.2:-91917811 | MS.gene063170:CDS |
| TTTCTCATGGAGACCAAGCT+AGG | 0.482788 | 3.2:-91918379 | MS.gene063170:CDS |
| TCACTTGGATACATCACAAT+GGG | 0.486976 | 3.2:-91917730 | MS.gene063170:CDS |
| ACCCAAATGTAATTGTCCGC+TGG | 0.506688 | 3.2:+91917639 | None:intergenic |
| AACTTAACCTCTCCTTTGAT+GGG | 0.514268 | 3.2:+91918044 | None:intergenic |
| CACTATAGTAGAAATTATGA+TGG | 0.530352 | 3.2:-91917901 | MS.gene063170:CDS |
| AGATAAGGTTGAGGCTATGG+TGG | 0.538336 | 3.2:-91917757 | MS.gene063170:CDS |
| AAATTCTTCTCTTTCTCTCG+AGG | 0.539084 | 3.2:-91918119 | MS.gene063170:CDS |
| TTCAAGCATAGATTCTAAAG+AGG | 0.545516 | 3.2:+91918013 | None:intergenic |
| ATAACTTAGGGGAAGTTGAT+GGG | 0.567226 | 3.2:+91918201 | None:intergenic |
| TTACTAGTAGATGAAGAAAG+AGG | 0.580251 | 3.2:+91918493 | None:intergenic |
| GTGAAGAATACCATTAGTGA+AGG | 0.584434 | 3.2:+91918278 | None:intergenic |
| TGTGAAAGCAAACCCATCAA+AGG | 0.587824 | 3.2:-91918056 | MS.gene063170:CDS |
| TTCTCATGGAGACCAAGCTA+GGG | 0.591351 | 3.2:-91918378 | MS.gene063170:CDS |
| GGAAATTCTAGCTCCAAAGA+TGG | 0.597283 | 3.2:-91917880 | MS.gene063170:CDS |
| GTCCCTAAATTGAAATCACA+AGG | 0.602399 | 3.2:-91917618 | MS.gene063170:CDS |
| TTCTTTGGGCCATAACTTAG+GGG | 0.604761 | 3.2:+91918190 | None:intergenic |
| TGAGAATGGAGATAAGGTTG+AGG | 0.616111 | 3.2:-91917766 | MS.gene063170:CDS |
| TTCACCACAAGCCATAGCAA+TGG | 0.617486 | 3.2:-91918096 | MS.gene063170:CDS |
| GTCACTTGGATACATCACAA+TGG | 0.635200 | 3.2:-91917731 | MS.gene063170:CDS |
| ACTTGAAATGAAACATGACT+AGG | 0.655390 | 3.2:+91917705 | None:intergenic |
| AATTCTAGCTCCAAAGATGG+TGG | 0.662511 | 3.2:-91917877 | MS.gene063170:CDS |
| AAGCAAACCCATCAAAGGAG+AGG | 0.675310 | 3.2:-91918051 | MS.gene063170:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATATTTAACATACCAGA+AGG | + | chr3.2:91917655-91917674 | None:intergenic | 20.0% |
| !!! | TGGGAATAAATTTTATATCT+TGG | - | chr3.2:91917603-91917622 | MS.gene063170:CDS | 20.0% |
| ! | AACCTTGTGATTTCAATTTA+GGG | + | chr3.2:91918508-91918527 | None:intergenic | 25.0% |
| ! | CACTATAGTAGAAATTATGA+TGG | - | chr3.2:91918220-91918239 | MS.gene063170:CDS | 25.0% |
| ! | GAATTTACACAAAACATTCT+TGG | - | chr3.2:91918128-91918147 | MS.gene063170:CDS | 25.0% |
| ! | TAAAAAACAGCATAAGGATA+AGG | + | chr3.2:91918284-91918303 | None:intergenic | 25.0% |
| ! | TAATATTGATCCTTCACTAA+TGG | - | chr3.2:91917833-91917852 | MS.gene063170:CDS | 25.0% |
| ! | TGACAATAAAAAACAGCATA+AGG | + | chr3.2:91918290-91918309 | None:intergenic | 25.0% |
| ! | TTGAAAAGTAACACTTGATT+TGG | + | chr3.2:91918195-91918214 | None:intergenic | 25.0% |
| !! | ATTCTTCACTTTGAAAGATT+TGG | - | chr3.2:91917857-91917876 | MS.gene063170:CDS | 25.0% |
| !! | TTTGCTTTCACATTCTTTTA+AGG | + | chr3.2:91918057-91918076 | None:intergenic | 25.0% |
| !!! | AGGGTGTATAAAGTTTTATT+GGG | - | chr3.2:91918329-91918348 | MS.gene063170:CDS | 25.0% |
| !!! | ATTTTAGAAGATATGAGAGT+TGG | + | chr3.2:91917986-91918005 | None:intergenic | 25.0% |
| !!! | GAATTTTTTCAGTTTTCTCA+TGG | - | chr3.2:91917729-91917748 | MS.gene063170:CDS | 25.0% |
| !!! | TAGGGTGTATAAAGTTTTAT+TGG | - | chr3.2:91918328-91918347 | MS.gene063170:CDS | 25.0% |
| ACTTGAAATGAAACATGACT+AGG | + | chr3.2:91918419-91918438 | None:intergenic | 30.0% | |
| ATAGTCAAGAAAGTGAGAAT+AGG | - | chr3.2:91918309-91918328 | MS.gene063170:CDS | 30.0% | |
| GAACCTTGTGATTTCAATTT+AGG | + | chr3.2:91918509-91918528 | None:intergenic | 30.0% | |
| GACTCATATGATTATGATGA+TGG | + | chr3.2:91917812-91917831 | None:intergenic | 30.0% | |
| TAGTCAAGAAAGTGAGAATA+GGG | - | chr3.2:91918310-91918329 | MS.gene063170:CDS | 30.0% | |
| TTACTAGTAGATGAAGAAAG+AGG | + | chr3.2:91917631-91917650 | None:intergenic | 30.0% | |
| ! | ACTTTGAAAGATTTGGAAGT+AGG | - | chr3.2:91917864-91917883 | MS.gene063170:CDS | 30.0% |
| ! | TTCAAGCATAGATTCTAAAG+AGG | + | chr3.2:91918111-91918130 | None:intergenic | 30.0% |
| !! | CATGTTTCATTTCAAGTTCT+TGG | - | chr3.2:91918422-91918441 | MS.gene063170:intron | 30.0% |
| !!! | GGGTGTATAAAGTTTTATTG+GGG | - | chr3.2:91918330-91918349 | MS.gene063170:CDS | 30.0% |
| !!! | GGTGTATAAAGTTTTATTGG+GGG | - | chr3.2:91918331-91918350 | MS.gene063170:CDS | 30.0% |
| !!! | GTGTATAAAGTTTTATTGGG+GGG | - | chr3.2:91918332-91918351 | MS.gene063170:CDS | 30.0% |
| AAATTCTTCTCTTTCTCTCG+AGG | - | chr3.2:91918002-91918021 | MS.gene063170:CDS | 35.0% | |
| AACTTAACCTCTCCTTTGAT+GGG | + | chr3.2:91918080-91918099 | None:intergenic | 35.0% | |
| AAGTGATTCAGCTTCTTCTT+TGG | + | chr3.2:91917949-91917968 | None:intergenic | 35.0% | |
| AGTGATTCAGCTTCTTCTTT+GGG | + | chr3.2:91917948-91917967 | None:intergenic | 35.0% | |
| GTCCCTAAATTGAAATCACA+AGG | - | chr3.2:91918503-91918522 | MS.gene063170:CDS | 35.0% | |
| GTGAAGAATACCATTAGTGA+AGG | + | chr3.2:91917846-91917865 | None:intergenic | 35.0% | |
| TCACTTGGATACATCACAAT+GGG | - | chr3.2:91918391-91918410 | MS.gene063170:intron | 35.0% | |
| TCATCTACTAGTAATCCTTC+TGG | - | chr3.2:91917637-91917656 | MS.gene063170:CDS | 35.0% | |
| ! | ATAACTTAGGGGAAGTTGAT+GGG | + | chr3.2:91917923-91917942 | None:intergenic | 35.0% |
| !! | GAGAGTTGGTTTGATAAGAA+AGG | + | chr3.2:91917972-91917991 | None:intergenic | 35.0% |
| CATAACTTAGGGGAAGTTGA+TGG | + | chr3.2:91917924-91917943 | None:intergenic | 40.0% | |
| CATCAACTTCCCCTAAGTTA+TGG | - | chr3.2:91917922-91917941 | MS.gene063170:CDS | 40.0% | |
| CTTCTTTGGGCCATAACTTA+GGG | + | chr3.2:91917935-91917954 | None:intergenic | 40.0% | |
| GAACTTAACCTCTCCTTTGA+TGG | + | chr3.2:91918081-91918100 | None:intergenic | 40.0% | |
| GTCACTTGGATACATCACAA+TGG | - | chr3.2:91918390-91918409 | MS.gene063170:intron | 40.0% | |
| TCTTCTTTGGGCCATAACTT+AGG | + | chr3.2:91917936-91917955 | None:intergenic | 40.0% | |
| TGAGAATGGAGATAAGGTTG+AGG | - | chr3.2:91918355-91918374 | MS.gene063170:CDS | 40.0% | |
| TGTGAAAGCAAACCCATCAA+AGG | - | chr3.2:91918065-91918084 | MS.gene063170:CDS | 40.0% | |
| TGTGCAAAGTTGCATAAGCT+TGG | + | chr3.2:91918169-91918188 | None:intergenic | 40.0% | |
| TTCTTTGGGCCATAACTTAG+GGG | + | chr3.2:91917934-91917953 | None:intergenic | 40.0% | |
| TTTCAACCAATTCCCTAGCT+TGG | + | chr3.2:91917758-91917777 | None:intergenic | 40.0% | |
| ! | TAAGGTGCTTTCCATTGCTA+TGG | + | chr3.2:91918039-91918058 | None:intergenic | 40.0% |
| !! | AATTCTAGCTCCAAAGATGG+TGG | - | chr3.2:91918244-91918263 | MS.gene063170:CDS | 40.0% |
| !! | GGAAATTCTAGCTCCAAAGA+TGG | - | chr3.2:91918241-91918260 | MS.gene063170:CDS | 40.0% |
| !!! | TGTGTGTCATTTTTTCCCAG+CGG | - | chr3.2:91918466-91918485 | MS.gene063170:intron | 40.0% |
| AAGCAAACCCATCAAAGGAG+AGG | - | chr3.2:91918070-91918089 | MS.gene063170:CDS | 45.0% | |
| ACCCAAATGTAATTGTCCGC+TGG | + | chr3.2:91918485-91918504 | None:intergenic | 45.0% | |
| AGATAAGGTTGAGGCTATGG+TGG | - | chr3.2:91918364-91918383 | MS.gene063170:CDS | 45.0% | |
| CCCAAATGTAATTGTCCGCT+GGG | + | chr3.2:91918484-91918503 | None:intergenic | 45.0% | |
| CCCAGCGGACAATTACATTT+GGG | - | chr3.2:91918481-91918500 | MS.gene063170:intron | 45.0% | |
| CTTTCCATTGCTATGGCTTG+TGG | + | chr3.2:91918032-91918051 | None:intergenic | 45.0% | |
| TCCCAGCGGACAATTACATT+TGG | - | chr3.2:91918480-91918499 | MS.gene063170:intron | 45.0% | |
| TGGAGATAAGGTTGAGGCTA+TGG | - | chr3.2:91918361-91918380 | MS.gene063170:CDS | 45.0% | |
| TTCACCACAAGCCATAGCAA+TGG | - | chr3.2:91918025-91918044 | MS.gene063170:CDS | 45.0% | |
| TTCTCATGGAGACCAAGCTA+GGG | - | chr3.2:91917743-91917762 | MS.gene063170:CDS | 45.0% | |
| TTTCTCATGGAGACCAAGCT+AGG | - | chr3.2:91917742-91917761 | MS.gene063170:CDS | 45.0% | |
| !! | GAAGTTGATGGGTCTCTCTT+AGG | + | chr3.2:91917912-91917931 | None:intergenic | 45.0% |
| !! | GTTTTATTGGGGGGTGAGAA+TGG | - | chr3.2:91918341-91918360 | MS.gene063170:CDS | 45.0% |
| GTGTGACAAGCCACCATCTT+TGG | + | chr3.2:91918257-91918276 | None:intergenic | 50.0% | |
| TGACACACAGAAGAGCTTCC+TGG | + | chr3.2:91918455-91918474 | None:intergenic | 50.0% | |
| TGGAGACCAAGCTAGGGAAT+TGG | - | chr3.2:91917749-91917768 | MS.gene063170:CDS | 50.0% | |
| ! | GGCTATGGTGGTTTGTCACT+TGG | - | chr3.2:91918376-91918395 | MS.gene063170:CDS | 50.0% |
| !! | CAAGTTCTTGGTGTCACACC+AGG | - | chr3.2:91918434-91918453 | MS.gene063170:intron | 50.0% |
| GGGGGGTGAGAATGGAGATA+AGG | - | chr3.2:91918349-91918368 | MS.gene063170:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 91917602 | 91918541 | 91917602 | ID=MS.gene063170 |
| chr3.2 | mRNA | 91917602 | 91918541 | 91917602 | ID=MS.gene063170.t1;Parent=MS.gene063170 |
| chr3.2 | exon | 91918485 | 91918541 | 91918485 | ID=MS.gene063170.t1.exon1;Parent=MS.gene063170.t1 |
| chr3.2 | CDS | 91918485 | 91918541 | 91918485 | ID=cds.MS.gene063170.t1;Parent=MS.gene063170.t1 |
| chr3.2 | exon | 91917602 | 91918402 | 91917602 | ID=MS.gene063170.t1.exon2;Parent=MS.gene063170.t1 |
| chr3.2 | CDS | 91917602 | 91918402 | 91917602 | ID=cds.MS.gene063170.t1;Parent=MS.gene063170.t1 |
| Gene Sequence |
| Protein sequence |
