Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063290.t1 | XP_024641022.1 | 59.2 | 103 | 42 | 0 | 1 | 103 | 255 | 357 | 5.70E-25 | 124.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063290.t1 | G7IA54 | 58.3 | 103 | 43 | 0 | 28 | 130 | 1 | 103 | 4.6e-24 | 121.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053008 | MS.gene063290 | 0.808792 | 2.60E-50 | -1.69E-46 |
| MS.gene055818 | MS.gene063290 | 0.806399 | 8.38E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063290.t1 | MTR_1g061910 | 58.252 | 103 | 43 | 0 | 28 | 130 | 1 | 103 | 1.75e-36 | 125 |
| MS.gene063290.t1 | MTR_6g472390 | 77.778 | 72 | 13 | 1 | 12 | 83 | 3 | 71 | 4.63e-34 | 120 |
| MS.gene063290.t1 | MTR_1g019050 | 80.282 | 71 | 12 | 1 | 183 | 251 | 172 | 242 | 2.45e-27 | 107 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 65 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACAACATCAACAGCCTTTA+TGG | 0.151097 | 1.4:-4078621 | MS.gene063290:CDS |
| TGGGGTTGATTCATTGGTTT+TGG | 0.248478 | 1.4:-4078282 | MS.gene063290:CDS |
| GCTGGATTTGGAATGGCTTC+GGG | 0.261557 | 1.4:-4078398 | MS.gene063290:CDS |
| ACACGGCAGAGAAAGGAATT+AGG | 0.272033 | 1.4:+4078589 | None:intergenic |
| CAGTTCCAACGACAAGAAAA+AGG | 0.278063 | 1.4:+4078646 | None:intergenic |
| GAGTGGTGGGGTTGATTCAT+TGG | 0.283377 | 1.4:-4078288 | MS.gene063290:CDS |
| GCTCCACTTAAGGCTGGATT+TGG | 0.286717 | 1.4:-4078410 | MS.gene063290:CDS |
| GGCTGGATTTGGAATGGCTT+CGG | 0.304498 | 1.4:-4078399 | MS.gene063290:CDS |
| ACACAACAAATCTAGCAAAT+TGG | 0.306026 | 1.4:-4080476 | MS.gene063290:CDS |
| AGAATAATTCCCATCTCATT+AGG | 0.307426 | 1.4:-4078674 | MS.gene063290:CDS |
| TTGCTACAAGCATTTGTCTT+TGG | 0.323587 | 1.4:+4080286 | None:intergenic |
| AATATCAACAATTGAAAATT+CGG | 0.329798 | 1.4:+4080540 | None:intergenic |
| CAGAGAAAGGAATTAGGGTT+AGG | 0.348098 | 1.4:+4078595 | None:intergenic |
| TGAAGATATGGGTGATAATC+AGG | 0.355872 | 1.4:-4080403 | MS.gene063290:CDS |
| TCATCTTGCATTCCTTCTAT+AGG | 0.361163 | 1.4:+4080369 | None:intergenic |
| GTGTCAGTTCCCAAGGGATT+TGG | 0.362335 | 1.4:+4080495 | None:intergenic |
| GTAAACAGATTCATATGGTT+AGG | 0.366712 | 1.4:-4080581 | MS.gene063290:CDS |
| GCCTGTGCAAGATGAAGATA+TGG | 0.394727 | 1.4:-4080415 | MS.gene063290:CDS |
| TTGGAATGGCTTCGGGGTTG+CGG | 0.403725 | 1.4:-4078391 | MS.gene063290:CDS |
| CTGCAATAATGCTCCACTTA+AGG | 0.407663 | 1.4:-4078420 | MS.gene063290:CDS |
| TAAACAGATTCATATGGTTA+GGG | 0.421849 | 1.4:-4080580 | MS.gene063290:CDS |
| GTGAAGATTGTGACGGTTCA+TGG | 0.424458 | 1.4:-4078353 | MS.gene063290:CDS |
| CATATGGTTAGGGATATAGA+TGG | 0.425750 | 1.4:-4080570 | MS.gene063290:CDS |
| CACGGCAGAGAAAGGAATTA+GGG | 0.442544 | 1.4:+4078590 | None:intergenic |
| GAATGCAAGATGACGATGAT+TGG | 0.446928 | 1.4:-4080359 | MS.gene063290:CDS |
| GAGGAACAACAACCTATAGA+AGG | 0.460079 | 1.4:-4080381 | MS.gene063290:CDS |
| TTAGGGTTAGGGTTCCATAA+AGG | 0.469727 | 1.4:+4078607 | None:intergenic |
| GCGTGGAACGTTGGAGGCTA+AGG | 0.472074 | 1.4:-4080337 | MS.gene063290:CDS |
| TCTTGCACAGGCTGCTCTTG+AGG | 0.483056 | 1.4:+4080426 | None:intergenic |
| AGTGGGAGATGAGGAGTGGT+GGG | 0.484755 | 1.4:-4078301 | MS.gene063290:CDS |
| ATAAAGGCTGTTGATGTTGT+TGG | 0.486970 | 1.4:+4078623 | None:intergenic |
| ATTCCAAATCCAGCCTTAAG+TGG | 0.497244 | 1.4:+4078407 | None:intergenic |
| AAGTGGGAGATGAGGAGTGG+TGG | 0.497507 | 1.4:-4078302 | MS.gene063290:CDS |
| AGAGAAAGGAATTAGGGTTA+GGG | 0.502994 | 1.4:+4078596 | None:intergenic |
| ATTTGTTGTGTCAGTTCCCA+AGG | 0.506460 | 1.4:+4080488 | None:intergenic |
| AAAGGGTAAACCTAATGAGA+TGG | 0.509041 | 1.4:+4078664 | None:intergenic |
| TGCTGATTCGTCGTTGAAGT+GGG | 0.511671 | 1.4:-4078318 | MS.gene063290:CDS |
| ACCACAGACACGGCAGAGAA+AGG | 0.521644 | 1.4:+4078582 | None:intergenic |
| TCCTTTCTCTGCCGTGTCTG+TGG | 0.525164 | 1.4:-4078583 | MS.gene063290:CDS |
| ACTTAAGGCTGGATTTGGAA+TGG | 0.529534 | 1.4:-4078405 | MS.gene063290:CDS |
| CTGCTGATTCGTCGTTGAAG+TGG | 0.542933 | 1.4:-4078319 | MS.gene063290:CDS |
| CCCATATCTTCATCTTGCAC+AGG | 0.543313 | 1.4:+4080414 | None:intergenic |
| GCTTCGGGGTTGCGGCGAGG+TGG | 0.549029 | 1.4:-4078383 | MS.gene063290:CDS |
| AAGGGTAAACCTAATGAGAT+GGG | 0.556879 | 1.4:+4078665 | None:intergenic |
| CGTCGTTGAAGTGGGAGATG+AGG | 0.561588 | 1.4:-4078310 | MS.gene063290:CDS |
| GGCTGCTCTTGAGGTACATG+TGG | 0.562680 | 1.4:+4080435 | None:intergenic |
| CTGGATTTGGAATGGCTTCG+GGG | 0.563030 | 1.4:-4078397 | MS.gene063290:CDS |
| CTGAAGAAAATCACATTGAG+AGG | 0.569791 | 1.4:-4080629 | MS.gene063290:CDS |
| GATTGTGACGGTTCATGGTA+AGG | 0.571325 | 1.4:-4078348 | MS.gene063290:CDS |
| AATAATGCTCCACTTAAGGC+TGG | 0.571589 | 1.4:-4078416 | MS.gene063290:CDS |
| TGATTGGCGTGGAACGTTGG+AGG | 0.575574 | 1.4:-4080343 | MS.gene063290:CDS |
| TTTGTTGTGTCAGTTCCCAA+GGG | 0.584927 | 1.4:+4080489 | None:intergenic |
| CATTGCTTGGAAGATGGGAG+CGG | 0.585834 | 1.4:-4080661 | None:intergenic |
| CGATGATTGGCGTGGAACGT+TGG | 0.592476 | 1.4:-4080346 | MS.gene063290:CDS |
| ATATGGTTAGGGATATAGAT+GGG | 0.593840 | 1.4:-4080569 | MS.gene063290:CDS |
| ATGGCTTCGGGGTTGCGGCG+AGG | 0.597398 | 1.4:-4078386 | MS.gene063290:CDS |
| TAAGGTTGACAAGATTAATG+AGG | 0.608406 | 1.4:-4080319 | MS.gene063290:CDS |
| TGCATTCGTAACCACAGACA+CGG | 0.628222 | 1.4:+4078572 | None:intergenic |
| GACGGTTCATGGTAAGGTGA+AGG | 0.641007 | 1.4:-4078342 | MS.gene063290:CDS |
| GTGGGAGATGAGGAGTGGTG+GGG | 0.643449 | 1.4:-4078300 | MS.gene063290:CDS |
| TTGAAGTGGGAGATGAGGAG+TGG | 0.667462 | 1.4:-4078305 | MS.gene063290:CDS |
| CAAGATGACGATGATTGGCG+TGG | 0.680070 | 1.4:-4080354 | MS.gene063290:CDS |
| CTTGAAGTGAATGTTGACAT+CGG | 0.681461 | 1.4:+4078540 | None:intergenic |
| CCTGTGCAAGATGAAGATAT+GGG | 0.686952 | 1.4:-4080414 | MS.gene063290:CDS |
| AGATATGGGTGATAATCAGG+AGG | 0.694136 | 1.4:-4080400 | MS.gene063290:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATCAACAATTGAAAATT+CGG | + | chr1.4:4079436-4079417 | None:intergenic | 15.0% |
| !! | AATTACAACATAATTAAACA+TGG | - | chr1.4:4078992-4079011 | MS.gene063290:intron | 15.0% |
| !! | ACAAAACATTAAAGTAAAAT+AGG | + | chr1.4:4078692-4078711 | None:intergenic | 15.0% |
| !!! | TTTACTTTAATGTTTTGTTT+TGG | - | chr1.4:4078694-4078713 | MS.gene063290:intron | 15.0% |
| !! | AATCATAAATTCAAGTGTAA+AGG | - | chr1.4:4080022-4080041 | MS.gene063290:intron | 20.0% |
| !! | TATTAAATTGAAACGTTCTA+AGG | - | chr1.4:4080416-4080435 | MS.gene063290:CDS | 20.0% |
| !! | TTTACAAAAATCAAGATCAA+TGG | - | chr1.4:4079476-4079495 | MS.gene063290:intron | 20.0% |
| !!! | TTTACTTTAATGCTTTGTTT+TGG | + | chr1.4:4079081-4079100 | None:intergenic | 20.0% |
| !!! | TTTTTGTAAACAGATTCATA+TGG | - | chr1.4:4078309-4078328 | MS.gene063290:CDS | 20.0% |
| !!! | TTTTTGTAAACAGATTCATA+TGG | + | chr1.4:4078328-4078309 | None:intergenic | 20.0% |
| ! | ACACATTGTTTCATTTAGTT+TGG | + | chr1.4:4079958-4079977 | None:intergenic | 25.0% |
| ! | AGGTATAAAAGACAATGTTA+TGG | + | chr1.4:4080108-4080127 | None:intergenic | 25.0% |
| ! | TAAACAGATTCATATGGTTA+GGG | - | chr1.4:4078315-4078334 | MS.gene063290:CDS | 25.0% |
| ! | TAAACAGATTCATATGGTTT+GGG | + | chr1.4:4079460-4079479 | None:intergenic | 25.0% |
| ! | TACAAGTTCTTCAACTTAAT+AGG | + | chr1.4:4078872-4078891 | None:intergenic | 25.0% |
| ! | TATGTGTAACATGATTATTC+TGG | - | chr1.4:4079102-4079121 | MS.gene063290:intron | 25.0% |
| ! | TGACAGATTTAGATTCATAA+TGG | - | chr1.4:4079786-4079805 | MS.gene063290:intron | 25.0% |
| ! | TTATGAATCTAAATCTGTCA+AGG | + | chr1.4:4079786-4079805 | None:intergenic | 25.0% |
| !! | AAAAGTGCATAACATATTCT+AGG | - | chr1.4:4078947-4078966 | MS.gene063290:intron | 25.0% |
| !! | AAAAGTGCATAACATATTCT+AGG | + | chr1.4:4078966-4078947 | None:intergenic | 25.0% |
| !! | ACTGAATTTTGTGACAAAAT+GGG | + | chr1.4:4079909-4079928 | None:intergenic | 25.0% |
| !! | CACATTGTTTCATTTAGTTT+GGG | + | chr1.4:4079957-4079976 | None:intergenic | 25.0% |
| !! | CTAAATGAAACAATGTGTTT+TGG | - | chr1.4:4079960-4079979 | MS.gene063290:intron | 25.0% |
| !! | TACTGAATTTTGTGACAAAA+TGG | + | chr1.4:4079910-4079929 | None:intergenic | 25.0% |
| !!! | AGTTTTGGTTACAAATAAGT+GGG | + | chr1.4:4079817-4079836 | None:intergenic | 25.0% |
| !!! | TGATGAGCTATTCATTTTTT+GGG | + | chr1.4:4079672-4079691 | None:intergenic | 25.0% |
| ACACAACAAATCTAGCAAAT+TGG | - | chr1.4:4078419-4078438 | MS.gene063290:CDS | 30.0% | |
| ACACAACAAATCTAGCAAAT+TGG | + | chr1.4:4078438-4078419 | None:intergenic | 30.0% | |
| AGAATAATTCCCATCTCATT+AGG | - | chr1.4:4080221-4080240 | MS.gene063290:intron | 30.0% | |
| ATATGGTTAGGGATATAGAT+GGG | - | chr1.4:4078326-4078345 | MS.gene063290:CDS | 30.0% | |
| ATTTCATTCGAAGGAATCAT+AGG | - | chr1.4:4080442-4080461 | MS.gene063290:CDS | 30.0% | |
| CTAAGGTTAATTTCATTCGA+AGG | - | chr1.4:4080433-4080452 | MS.gene063290:CDS | 30.0% | |
| GTAAACAGATTCATATGGTT+AGG | - | chr1.4:4078314-4078333 | MS.gene063290:CDS | 30.0% | |
| GTAAACAGATTCATATGGTT+TGG | + | chr1.4:4078333-4078314 | None:intergenic | 30.0% | |
| GTTCATAGCATATCTTAACA+AGG | - | chr1.4:4079018-4079037 | MS.gene063290:intron | 30.0% | |
| TAAGGTTGACAAGATTAATG+AGG | - | chr1.4:4078576-4078595 | MS.gene063290:CDS | 30.0% | |
| TAGGTGTAACATGATTATTC+TGG | + | chr1.4:4078673-4078692 | None:intergenic | 30.0% | |
| TTAGGATATGCTATGAACAA+TGG | - | chr1.4:4078764-4078783 | MS.gene063290:intron | 30.0% | |
| TTATCTTGATTTAGATCCAC+AGG | + | chr1.4:4078463-4078444 | None:intergenic | 30.0% | |
| ! | ATATGGTTTGGGATATAGAT+GGG | + | chr1.4:4079449-4079468 | None:intergenic | 30.0% |
| ! | ATTTGAAACAAGACCTTGTT+AGG | - | chr1.4:4078746-4078765 | MS.gene063290:intron | 30.0% |
| ! | CTACAACATTTTCTCAAACA+CGG | + | chr1.4:4080651-4080670 | None:intergenic | 30.0% |
| ! | TCAACTTAATAGGTATCGTA+TGG | + | chr1.4:4078862-4078881 | None:intergenic | 30.0% |
| !! | CTACTTACTTTTAAGCCATT+TGG | + | chr1.4:4079618-4079637 | None:intergenic | 30.0% |
| !! | GATTGATTAGTTTCATTGCT+TGG | + | chr1.4:4079554-4079573 | None:intergenic | 30.0% |
| !! | TGTTTTTGTGAAGATTGTGA+CGG | - | chr1.4:4080535-4080554 | MS.gene063290:CDS | 30.0% |
| !!! | GAGTTTTGGTTACAAATAAG+TGG | + | chr1.4:4079818-4079837 | None:intergenic | 30.0% |
| !!! | GTGATGAGCTATTCATTTTT+TGG | + | chr1.4:4079673-4079692 | None:intergenic | 30.0% |
| !!! | TAATTTTGAGGCCTAATATC+CGG | - | chr1.4:4079848-4079867 | MS.gene063290:intron | 30.0% |
| !!! | TGATTCATTGGTTTTGGTTT+CGG | - | chr1.4:4080619-4080638 | MS.gene063290:CDS | 30.0% |
| AAAGGGTAAACCTAATGAGA+TGG | + | chr1.4:4080234-4080253 | None:intergenic | 35.0% | |
| AACAAATGTGTTGTAAACGC+TGG | + | chr1.4:4079641-4079660 | None:intergenic | 35.0% | |
| AACAACATCAACAGCCTTTA+TGG | - | chr1.4:4080274-4080293 | MS.gene063290:intron | 35.0% | |
| AAGGGTAAACCTAATGAGAT+GGG | + | chr1.4:4080233-4080252 | None:intergenic | 35.0% | |
| ACAGAGGAATTTCACTGAAT+AGG | + | chr1.4:4080160-4080179 | None:intergenic | 35.0% | |
| AGAGAAAGGAATTAGGGTTA+GGG | + | chr1.4:4080302-4080321 | None:intergenic | 35.0% | |
| AGTTCCAACGACAAGAAAAA+GGG | + | chr1.4:4080251-4080270 | None:intergenic | 35.0% | |
| AGTTTCATTGCTTGGAAGAT+GGG | + | chr1.4:4079546-4079565 | None:intergenic | 35.0% | |
| ATAAAGGCTGTTGATGTTGT+TGG | + | chr1.4:4080275-4080294 | None:intergenic | 35.0% | |
| ATAGGCTGGAATGATTATGT+AGG | + | chr1.4:4080071-4080090 | None:intergenic | 35.0% | |
| CATATGGTTAGGGATATAGA+TGG | - | chr1.4:4078325-4078344 | MS.gene063290:CDS | 35.0% | |
| CTGAAGAAAATCACATTGAG+AGG | - | chr1.4:4078266-4078285 | MS.gene063290:CDS | 35.0% | |
| CTTGAAGTGAATGTTGACAT+CGG | + | chr1.4:4080358-4080377 | None:intergenic | 35.0% | |
| GTAACATGATTATTCTGGAC+CGG | + | chr1.4:4079126-4079107 | None:intergenic | 35.0% | |
| GTTCATAGCATATCCTAACA+AGG | + | chr1.4:4078762-4078781 | None:intergenic | 35.0% | |
| TAACATGATTATTCTGGACC+GGG | + | chr1.4:4079127-4079108 | None:intergenic | 35.0% | |
| TAGTTTCATTGCTTGGAAGA+TGG | + | chr1.4:4079547-4079566 | None:intergenic | 35.0% | |
| TATGGTTGACAAGATGAATG+AGG | + | chr1.4:4079199-4079218 | None:intergenic | 35.0% | |
| TCATCTTGCATTCCTTCTAT+AGG | + | chr1.4:4078529-4078548 | None:intergenic | 35.0% | |
| TCTATCCTGAACAAAAGAGA+TGG | - | chr1.4:4079998-4080017 | MS.gene063290:intron | 35.0% | |
| TGAAGATATGGGTGATAATC+AGG | - | chr1.4:4078492-4078511 | MS.gene063290:intron | 35.0% | |
| TGAAGATATGGGTGATAATC+AGG | + | chr1.4:4078511-4078492 | None:intergenic | 35.0% | |
| TTCAAGTGTAAAGGTTTCGA+AGG | - | chr1.4:4080031-4080050 | MS.gene063290:intron | 35.0% | |
| TTGCTACAAGCATTTGTCTT+TGG | + | chr1.4:4078612-4078631 | None:intergenic | 35.0% | |
| TTTGGTTACAAATAAGTGGG+CGG | + | chr1.4:4079814-4079833 | None:intergenic | 35.0% | |
| TTTGTAACCAAAACTCCTGT+TGG | - | chr1.4:4079822-4079841 | MS.gene063290:intron | 35.0% | |
| ! | AACAACAAGCTTTTGAACAG+AGG | + | chr1.4:4080176-4080195 | None:intergenic | 35.0% |
| ! | AATTTTGTTGCCAAATCCCT+TGG | - | chr1.4:4078390-4078409 | MS.gene063290:CDS | 35.0% |
| ! | ACATAGCTCTATGTATGTAG+CGG | - | chr1.4:4079735-4079754 | MS.gene063290:intron | 35.0% |
| ! | ATTATGACCAACAGGAGTTT+TGG | + | chr1.4:4079832-4079851 | None:intergenic | 35.0% |
| ! | ATTTTGTTGCCAAATCCCTT+GGG | - | chr1.4:4078391-4078410 | MS.gene063290:CDS | 35.0% |
| ! | CATATGGTTTGGGATATAGA+TGG | + | chr1.4:4079450-4079469 | None:intergenic | 35.0% |
| ! | CCTCTCAATGTGATTTTCTT+CGG | - | chr1.4:4079506-4079525 | MS.gene063290:intron | 35.0% |
| ! | GATTACCATCTCTTTTGTTC+AGG | + | chr1.4:4080006-4080025 | None:intergenic | 35.0% |
| ! | TATGTATGTAGCGGAAAACA+GGG | - | chr1.4:4079744-4079763 | MS.gene063290:intron | 35.0% |
| ! | TCCTGTTGGTCATAATTTTG+AGG | - | chr1.4:4079836-4079855 | MS.gene063290:intron | 35.0% |
| ! | TTGCTACAAGCATTTGACTT+TGG | - | chr1.4:4079163-4079182 | MS.gene063290:intron | 35.0% |
| ! | TTTACCCTTTTTCTTGTCGT+TGG | - | chr1.4:4080244-4080263 | MS.gene063290:intron | 35.0% |
| ! | TTTGTTGTGTCAGTTCTCAA+TGG | - | chr1.4:4079366-4079385 | MS.gene063290:intron | 35.0% |
| !!! | AATTTTGAGGCCTAATATCC+GGG | - | chr1.4:4079849-4079868 | MS.gene063290:intron | 35.0% |
| !!! | GCTATTCATTTTTTGGGCTA+TGG | + | chr1.4:4079666-4079685 | None:intergenic | 35.0% |
| AACATCGAATATCCTCTACC+CGG | - | chr1.4:4078646-4078665 | MS.gene063290:CDS | 40.0% | |
| AATAATGCTCCACTTAAGGC+TGG | - | chr1.4:4080479-4080498 | MS.gene063290:CDS | 40.0% | |
| ACATCACATCTGAAAAGACG+AGG | + | chr1.4:4080199-4080218 | None:intergenic | 40.0% | |
| ACTTAAGGCTGGATTTGGAA+TGG | - | chr1.4:4080490-4080509 | MS.gene063290:CDS | 40.0% | |
| AGATATGGGTGATAATCAGG+AGG | - | chr1.4:4078495-4078514 | MS.gene063290:intron | 40.0% | |
| AGATATGGGTGATAATCAGG+AGG | + | chr1.4:4078514-4078495 | None:intergenic | 40.0% | |
| ATTCCAAATCCAGCCTTAAG+TGG | + | chr1.4:4080491-4080510 | None:intergenic | 40.0% | |
| CAGAGAAAGGAATTAGGGTT+AGG | + | chr1.4:4080303-4080322 | None:intergenic | 40.0% | |
| CAGTTCCAACGACAAGAAAA+AGG | + | chr1.4:4080252-4080271 | None:intergenic | 40.0% | |
| CCGAAGAAAATCACATTGAG+AGG | + | chr1.4:4079509-4079528 | None:intergenic | 40.0% | |
| CCTGTGCAAGATGAAGATAT+GGG | - | chr1.4:4078481-4078500 | MS.gene063290:intron | 40.0% | |
| CTGCAATAATGCTCCACTTA+AGG | - | chr1.4:4080475-4080494 | MS.gene063290:CDS | 40.0% | |
| GAATGCAAGATGACGATGAT+TGG | - | chr1.4:4078536-4078555 | MS.gene063290:intron | 40.0% | |
| GACAATGTTATGGCACTACT+TGG | + | chr1.4:4080098-4080117 | None:intergenic | 40.0% | |
| GAGGAACAACAACCTATAGA+AGG | - | chr1.4:4078514-4078533 | MS.gene063290:intron | 40.0% | |
| GCCTCAAAATTATGACCAAC+AGG | + | chr1.4:4079840-4079859 | None:intergenic | 40.0% | |
| GTAGAGGATATTCGATGTTG+AGG | + | chr1.4:4078645-4078664 | None:intergenic | 40.0% | |
| TCAACCAAAAGGCAAGATAG+TGG | + | chr1.4:4079582-4079601 | None:intergenic | 40.0% | |
| TCATCTTGCATTCCTCCTAT+AGG | - | chr1.4:4079246-4079265 | MS.gene063290:intron | 40.0% | |
| TCTGCGCAAGATGAAGATAT+GGG | + | chr1.4:4079294-4079313 | None:intergenic | 40.0% | |
| TTAGGGTTAGGGTTCCATAA+AGG | + | chr1.4:4080291-4080310 | None:intergenic | 40.0% | |
| TTGGTTACAAATAAGTGGGC+GGG | + | chr1.4:4079813-4079832 | None:intergenic | 40.0% | |
| TTTAAGCCATTTGGCATCTG+TGG | + | chr1.4:4079609-4079628 | None:intergenic | 40.0% | |
| ! | ACAACTTAGCAGGTATCGTA+TGG | - | chr1.4:4078896-4078915 | MS.gene063290:intron | 40.0% |
| ! | ATGGCACTACTTGGTAACAT+AGG | + | chr1.4:4080089-4080108 | None:intergenic | 40.0% |
| ! | CTATGTATGTAGCGGAAAAC+AGG | - | chr1.4:4079743-4079762 | MS.gene063290:intron | 40.0% |
| ! | GCTATGTCATGCACCATTTT+CGG | + | chr1.4:4079722-4079741 | None:intergenic | 40.0% |
| ! | GTGTCAGTTCTCAATGGATT+TGG | - | chr1.4:4079372-4079391 | MS.gene063290:intron | 40.0% |
| ! | TTTGTTGTGTCAGTTCCCAA+GGG | + | chr1.4:4078409-4078428 | None:intergenic | 40.0% |
| !! | ATTTGTTGTGTCAGTTCCCA+AGG | + | chr1.4:4078410-4078429 | None:intergenic | 40.0% |
| !!! | TGGGGTTGATTCATTGGTTT+TGG | - | chr1.4:4080613-4080632 | MS.gene063290:CDS | 40.0% |
| AACACCGAGTATCCTCTACT+CGG | + | chr1.4:4079129-4079148 | None:intergenic | 45.0% | |
| ACACGGCAGAGAAAGGAATT+AGG | + | chr1.4:4080309-4080328 | None:intergenic | 45.0% | |
| ATCGTATGGTGCGAGATTTC+AGG | - | chr1.4:4078910-4078929 | MS.gene063290:intron | 45.0% | |
| ATGACGATGATTGACGTGGA+AGG | + | chr1.4:4079230-4079249 | None:intergenic | 45.0% | |
| CAAGATGACGATGATTGACG+TGG | + | chr1.4:4079234-4079253 | None:intergenic | 45.0% | |
| CACGGCAGAGAAAGGAATTA+GGG | + | chr1.4:4080308-4080327 | None:intergenic | 45.0% | |
| CAGGAGGAACAACAACCTAT+AGG | + | chr1.4:4078530-4078511 | None:intergenic | 45.0% | |
| CCCATATCTTCATCTTGCAC+AGG | + | chr1.4:4078484-4078503 | None:intergenic | 45.0% | |
| CTTGTATCGCACAACTTAGC+AGG | - | chr1.4:4078886-4078905 | MS.gene063290:intron | 45.0% | |
| GAGGAACAACAACCTATAGG+AGG | + | chr1.4:4079261-4079280 | None:intergenic | 45.0% | |
| GATTATTCTGGACCGAGTAG+AGG | - | chr1.4:4079114-4079133 | MS.gene063290:intron | 45.0% | |
| GATTGTGACGGTTCATGGTA+AGG | - | chr1.4:4080547-4080566 | MS.gene063290:CDS | 45.0% | |
| GCCTGTGCAAGATGAAGATA+TGG | - | chr1.4:4078480-4078499 | MS.gene063290:intron | 45.0% | |
| GTCTGCGCAAGATGAAGATA+TGG | + | chr1.4:4079295-4079314 | None:intergenic | 45.0% | |
| GTGAAGATTGTGACGGTTCA+TGG | - | chr1.4:4080542-4080561 | MS.gene063290:CDS | 45.0% | |
| TCTCTCGTAACCCGGATATT+AGG | + | chr1.4:4079862-4079881 | None:intergenic | 45.0% | |
| TGCATTCGTAACCACAGACA+CGG | + | chr1.4:4080326-4080345 | None:intergenic | 45.0% | |
| ! | AAAAGGCAAGATAGTGGTGG+GGG | + | chr1.4:4079576-4079595 | None:intergenic | 45.0% |
| ! | ACCAAAAGGCAAGATAGTGG+TGG | + | chr1.4:4079579-4079598 | None:intergenic | 45.0% |
| ! | ATTTTCGGTAGGGCGGAAAT+GGG | + | chr1.4:4079707-4079726 | None:intergenic | 45.0% |
| ! | CAAAAGGCAAGATAGTGGTG+GGG | + | chr1.4:4079577-4079596 | None:intergenic | 45.0% |
| ! | CACTACTTGGTAACATAGGC+TGG | + | chr1.4:4080085-4080104 | None:intergenic | 45.0% |
| ! | CCAAAAGGCAAGATAGTGGT+GGG | + | chr1.4:4079578-4079597 | None:intergenic | 45.0% |
| ! | GTCATGCACCATTTTCGGTA+GGG | + | chr1.4:4079717-4079736 | None:intergenic | 45.0% |
| ! | TGTCATGCACCATTTTCGGT+AGG | + | chr1.4:4079718-4079737 | None:intergenic | 45.0% |
| !! | AAAATGGGTTTTGCAAGCGC+GGG | + | chr1.4:4079894-4079913 | None:intergenic | 45.0% |
| !! | CAAAATGGGTTTTGCAAGCG+CGG | + | chr1.4:4079895-4079914 | None:intergenic | 45.0% |
| !! | TCACGTGCTTTAGAGGCATT+AGG | + | chr1.4:4080128-4080147 | None:intergenic | 45.0% |
| !! | TGCCTCTAAAGCACGTGAAT+CGG | - | chr1.4:4080130-4080149 | MS.gene063290:intron | 45.0% |
| !! | TGCTGATTCGTCGTTGAAGT+GGG | - | chr1.4:4080577-4080596 | MS.gene063290:CDS | 45.0% |
| AAGCCATTTGGCATCTGTGG+CGG | + | chr1.4:4079606-4079625 | None:intergenic | 50.0% | |
| CAAGATGACGATGATTGGCG+TGG | - | chr1.4:4078541-4078560 | MS.gene063290:CDS | 50.0% | |
| CATTTCCGCCCTACCGAAAA+TGG | - | chr1.4:4079706-4079725 | MS.gene063290:intron | 50.0% | |
| CGATGATTGACGTGGAAGGT+TGG | + | chr1.4:4079226-4079245 | None:intergenic | 50.0% | |
| CTCATTCGTCTCTCGTAACC+CGG | + | chr1.4:4079870-4079889 | None:intergenic | 50.0% | |
| GACGGTTCATGGTAAGGTGA+AGG | - | chr1.4:4080553-4080572 | MS.gene063290:CDS | 50.0% | |
| GACTGCTCTTGAGATACCTG+TGG | - | chr1.4:4079312-4079331 | MS.gene063290:intron | 50.0% | |
| GATTATTCTGGACCGGGTAG+AGG | + | chr1.4:4078661-4078680 | None:intergenic | 50.0% | |
| GCTCCACTTAAGGCTGGATT+TGG | - | chr1.4:4080485-4080504 | MS.gene063290:CDS | 50.0% | |
| GTGTCAGTTCCCAAGGGATT+TGG | + | chr1.4:4078403-4078422 | None:intergenic | 50.0% | |
| TCCCGATTCACGTGCTTTAG+AGG | + | chr1.4:4080135-4080154 | None:intergenic | 50.0% | |
| TGATTGACGTGGAAGGTTGG+AGG | + | chr1.4:4079223-4079242 | None:intergenic | 50.0% | |
| TGGACCGAGTAGAGGATACT+CGG | - | chr1.4:4079122-4079141 | MS.gene063290:intron | 50.0% | |
| TTGAAGTGGGAGATGAGGAG+TGG | - | chr1.4:4080590-4080609 | MS.gene063290:CDS | 50.0% | |
| ! | ATGCACCATTTTCGGTAGGG+CGG | + | chr1.4:4079714-4079733 | None:intergenic | 50.0% |
| ! | CATTTTCGGTAGGGCGGAAA+TGG | + | chr1.4:4079708-4079727 | None:intergenic | 50.0% |
| ! | CCCACCACTATCTTGCCTTT+TGG | - | chr1.4:4079575-4079594 | MS.gene063290:intron | 50.0% |
| ! | CTGGATTTGGAATGGCTTCG+GGG | - | chr1.4:4080498-4080517 | MS.gene063290:CDS | 50.0% |
| ! | GAGTGGTGGGGTTGATTCAT+TGG | - | chr1.4:4080607-4080626 | MS.gene063290:CDS | 50.0% |
| ! | GCTGGATTTGGAATGGCTTC+GGG | - | chr1.4:4080497-4080516 | MS.gene063290:CDS | 50.0% |
| ! | GGCTGGATTTGGAATGGCTT+CGG | - | chr1.4:4080496-4080515 | MS.gene063290:CDS | 50.0% |
| !! | AAATGGGTTTTGCAAGCGCG+GGG | + | chr1.4:4079893-4079912 | None:intergenic | 50.0% |
| !! | CTGCTGATTCGTCGTTGAAG+TGG | - | chr1.4:4080576-4080595 | MS.gene063290:CDS | 50.0% |
| !! | GCCTCTAAAGCACGTGAATC+GGG | - | chr1.4:4080131-4080150 | MS.gene063290:intron | 50.0% |
| !! | GTAGAGGATACTCGGTGTTG+AGG | - | chr1.4:4079130-4079149 | MS.gene063290:intron | 50.0% |
| AAGTGGGAGATGAGGAGTGG+TGG | - | chr1.4:4080593-4080612 | MS.gene063290:CDS | 55.0% | |
| ACCACAGACACGGCAGAGAA+AGG | + | chr1.4:4080316-4080335 | None:intergenic | 55.0% | |
| ACGTGGAAGGTTGGAGGCTA+TGG | + | chr1.4:4079217-4079236 | None:intergenic | 55.0% | |
| AGTGGGAGATGAGGAGTGGT+GGG | - | chr1.4:4080594-4080613 | MS.gene063290:CDS | 55.0% | |
| CGATGATTGGCGTGGAACGT+TGG | - | chr1.4:4078549-4078568 | MS.gene063290:CDS | 55.0% | |
| CGTCGTTGAAGTGGGAGATG+AGG | - | chr1.4:4080585-4080604 | MS.gene063290:CDS | 55.0% | |
| GGCTGCTCTTGAGGTACATG+TGG | + | chr1.4:4078463-4078482 | None:intergenic | 55.0% | |
| TCCTTTCTCTGCCGTGTCTG+TGG | - | chr1.4:4080312-4080331 | MS.gene063290:CDS | 55.0% | |
| TCTGTGGCGGCTCAACCAAA+AGG | + | chr1.4:4079593-4079612 | None:intergenic | 55.0% | |
| TCTTGCACAGGCTGCTCTTG+AGG | + | chr1.4:4078472-4078491 | None:intergenic | 55.0% | |
| TGATTGGCGTGGAACGTTGG+AGG | - | chr1.4:4078552-4078571 | MS.gene063290:CDS | 55.0% | |
| TTGGAATGGCTTCGGGGTTG+CGG | - | chr1.4:4080504-4080523 | MS.gene063290:CDS | 55.0% | |
| CGGTAGGGCGGAAATGGGAA+CGG | + | chr1.4:4079702-4079721 | None:intergenic | 60.0% | |
| GAGCCGCCACAGATGCCAAA+TGG | - | chr1.4:4079600-4079619 | MS.gene063290:intron | 60.0% | |
| GCGTGGAACGTTGGAGGCTA+AGG | - | chr1.4:4078558-4078577 | MS.gene063290:CDS | 60.0% | |
| GTGGGAGATGAGGAGTGGTG+GGG | - | chr1.4:4080595-4080614 | MS.gene063290:CDS | 60.0% | |
| GGGCGGAAATGGGAACGGTG+AGG | + | chr1.4:4079697-4079716 | None:intergenic | 65.0% | |
| ATGGCTTCGGGGTTGCGGCG+AGG | - | chr1.4:4080509-4080528 | MS.gene063290:CDS | 70.0% | |
| GCTTCGGGGTTGCGGCGAGG+TGG | - | chr1.4:4080512-4080531 | MS.gene063290:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 4078247 | 4080670 | 4078247 | ID=MS.gene063290 |
| chr1.4 | mRNA | 4078247 | 4080670 | 4078247 | ID=MS.gene063290.t1;Parent=MS.gene063290 |
| chr1.4 | exon | 4080282 | 4080670 | 4080282 | ID=MS.gene063290.t1.exon1;Parent=MS.gene063290.t1 |
| chr1.4 | CDS | 4080282 | 4080670 | 4080282 | ID=cds.MS.gene063290.t1;Parent=MS.gene063290.t1 |
| chr1.4 | exon | 4078537 | 4078707 | 4078537 | ID=MS.gene063290.t1.exon2;Parent=MS.gene063290.t1 |
| chr1.4 | CDS | 4078537 | 4078707 | 4078537 | ID=cds.MS.gene063290.t1;Parent=MS.gene063290.t1 |
| chr1.4 | exon | 4078247 | 4078442 | 4078247 | ID=MS.gene063290.t1.exon3;Parent=MS.gene063290.t1 |
| chr1.4 | CDS | 4078247 | 4078442 | 4078247 | ID=cds.MS.gene063290.t1;Parent=MS.gene063290.t1 |
| Gene Sequence |
| Protein sequence |
