Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063479.t1 | XP_013457966.1 | 98.1 | 478 | 9 | 0 | 1 | 478 | 1 | 478 | 2.30E-269 | 937.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063479.t1 | Q96558 | 76.7 | 473 | 108 | 2 | 4 | 476 | 3 | 473 | 4.5e-213 | 741.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063479.t1 | A0A072UQP6 | 98.1 | 478 | 9 | 0 | 1 | 478 | 1 | 478 | 1.7e-269 | 937.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050807 | MS.gene063479 | 0.827991 | 1.15E-54 | -1.69E-46 |
| MS.gene053565 | MS.gene063479 | 0.801426 | 9.06E-49 | -1.69E-46 |
| MS.gene05510 | MS.gene063479 | 0.802647 | 5.08E-49 | -1.69E-46 |
| MS.gene057869 | MS.gene063479 | 0.803726 | 3.04E-49 | -1.69E-46 |
| MS.gene059128 | MS.gene063479 | 0.804756 | 1.85E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063479.t1 | MTR_4g109360 | 98.117 | 478 | 9 | 0 | 1 | 478 | 1 | 478 | 0.0 | 963 |
| MS.gene063479.t1 | MTR_7g012950 | 75.264 | 473 | 115 | 2 | 4 | 476 | 3 | 473 | 0.0 | 758 |
| MS.gene063479.t1 | MTR_5g043970 | 74.262 | 474 | 119 | 3 | 4 | 476 | 3 | 474 | 0.0 | 736 |
| MS.gene063479.t1 | MTR_4g082990 | 72.516 | 473 | 128 | 2 | 4 | 476 | 3 | 473 | 0.0 | 717 |
| MS.gene063479.t1 | MTR_6g014890 | 52.427 | 103 | 47 | 1 | 13 | 115 | 16 | 116 | 1.30e-29 | 114 |
| MS.gene063479.t1 | MTR_6g033430 | 65.753 | 73 | 25 | 0 | 65 | 137 | 1 | 73 | 1.61e-23 | 94.4 |
| MS.gene063479.t1 | MTR_6g014930 | 52.475 | 101 | 25 | 2 | 18 | 118 | 1 | 78 | 3.80e-23 | 93.2 |
| MS.gene063479.t1 | MTR_6g014530 | 44.444 | 126 | 36 | 2 | 15 | 140 | 8 | 99 | 2.18e-22 | 92.4 |
| MS.gene063479.t1 | MTR_6g014840 | 49.412 | 85 | 34 | 1 | 4 | 88 | 3 | 78 | 7.74e-19 | 81.3 |
| MS.gene063479.t1 | MTR_6g014870 | 47.253 | 91 | 25 | 1 | 50 | 140 | 16 | 83 | 1.27e-17 | 80.1 |
| MS.gene063479.t1 | MTR_6g014850 | 46.000 | 100 | 27 | 2 | 4 | 103 | 3 | 75 | 1.41e-15 | 76.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063479.t1 | AT5G15490 | 75.687 | 473 | 113 | 2 | 4 | 476 | 3 | 473 | 0.0 | 753 |
| MS.gene063479.t1 | AT5G39320 | 74.630 | 473 | 118 | 2 | 4 | 476 | 3 | 473 | 0.0 | 749 |
| MS.gene063479.t1 | AT3G29360 | 75.264 | 473 | 115 | 2 | 4 | 476 | 3 | 473 | 0.0 | 749 |
| MS.gene063479.t1 | AT3G29360 | 75.264 | 473 | 115 | 2 | 4 | 476 | 3 | 473 | 0.0 | 749 |
| MS.gene063479.t1 | AT1G26570 | 73.207 | 474 | 124 | 3 | 4 | 476 | 3 | 474 | 0.0 | 729 |
| MS.gene063479.t1 | AT3G01010 | 69.677 | 155 | 44 | 1 | 321 | 475 | 1 | 152 | 1.11e-74 | 232 |
Find 88 sgRNAs with CRISPR-Local
Find 106 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACACTAGCATTTAAGTATT+TGG | 0.125445 | 8.4:-18210177 | None:intergenic |
| TGAAAGCTATATATGCTAAT+TGG | 0.126937 | 8.4:+18209973 | MS.gene063479:CDS |
| TCCATGTTTAATACAGTTTC+TGG | 0.145813 | 8.4:+18210350 | MS.gene063479:CDS |
| GTTGATAAGTTGAAGAAAAT+TGG | 0.189472 | 8.4:+18210755 | MS.gene063479:CDS |
| TGAAAGAATATTTGATAGTA+TGG | 0.240417 | 8.4:+18210691 | MS.gene063479:CDS |
| AAGCCGCGGATTTAACTTAT+TGG | 0.242643 | 8.4:+18209691 | MS.gene063479:CDS |
| GTTCCTTCAGAAAGAAATTC+AGG | 0.248283 | 8.4:-18209864 | None:intergenic |
| TCCTTGAAGTGGCTAATTAT+TGG | 0.258876 | 8.4:+18210267 | MS.gene063479:CDS |
| ATTGTTGTATAACTTCTTCT+AGG | 0.283319 | 8.4:-18209554 | None:intergenic |
| CCTCCAATTAGAACCCTATC+AGG | 0.288063 | 8.4:-18209909 | None:intergenic |
| GGTAAGAAGATTGCGGTTCT+AGG | 0.293047 | 8.4:+18210371 | MS.gene063479:CDS |
| TTCTGAAGGAACTTCCATTC+AGG | 0.293072 | 8.4:+18209875 | MS.gene063479:CDS |
| CGATGTTTGCAAAGGCCTTT+TGG | 0.301385 | 8.4:+18210442 | MS.gene063479:CDS |
| ATTACTTCAGCTGTTCTAAC+TGG | 0.314223 | 8.4:-18209783 | None:intergenic |
| GGATTTATCGTATACTCAAT+TGG | 0.325168 | 8.4:+18210776 | MS.gene063479:CDS |
| GAATCATTACTACCAATCTT+TGG | 0.333076 | 8.4:+18210009 | MS.gene063479:CDS |
| AGGATCTTCTAAATCCTGAT+AGG | 0.342974 | 8.4:+18209895 | MS.gene063479:CDS |
| CAATCCACCCACTGGTCTAT+TGG | 0.344932 | 8.4:-18210803 | None:intergenic |
| TCCAATAATTAGCCACTTCA+AGG | 0.349275 | 8.4:-18210268 | None:intergenic |
| AGCCGCGGATTTAACTTATT+GGG | 0.350232 | 8.4:+18209692 | MS.gene063479:CDS |
| TCTAGGCCAGGCTCATAGAT+AGG | 0.355935 | 8.4:-18209537 | None:intergenic |
| GTAAAGAAGATCTGTGGAAT+TGG | 0.362576 | 8.4:+18209396 | MS.gene063479:CDS |
| AATCCTGATAGGGTTCTAAT+TGG | 0.374154 | 8.4:+18209906 | MS.gene063479:CDS |
| GAGTTTCACTAGTGCGAAAC+AGG | 0.382818 | 8.4:+18210577 | MS.gene063479:CDS |
| GAAAGCTATATATGCTAATT+GGG | 0.384261 | 8.4:+18209974 | MS.gene063479:CDS |
| ATCACTAGTGTCTTTCTTGA+AGG | 0.385205 | 8.4:-18210399 | None:intergenic |
| TTAAATGCTAGTGTTGGTTT+TGG | 0.386227 | 8.4:+18210185 | MS.gene063479:CDS |
| TTCGATTGAAGGACATTTGA+GGG | 0.395001 | 8.4:-18209457 | None:intergenic |
| GGAGGAAATGATAAGAATCT+TGG | 0.417415 | 8.4:+18209927 | MS.gene063479:CDS |
| GATTTATCGTATACTCAATT+GGG | 0.417626 | 8.4:+18210777 | MS.gene063479:CDS |
| GTAGTAATGATTCTATCTTC+AGG | 0.422708 | 8.4:-18209999 | None:intergenic |
| AATCCTGAATTTCTTTCTGA+AGG | 0.445398 | 8.4:+18209861 | MS.gene063479:CDS |
| GGAATTGGAGCTGGATATGT+AGG | 0.457875 | 8.4:+18209411 | MS.gene063479:CDS |
| TTCGCACTAGTGAAACTCAT+TGG | 0.461387 | 8.4:-18210572 | None:intergenic |
| TGACCATGCCATTGCTATTG+TGG | 0.463693 | 8.4:-18209821 | None:intergenic |
| ACAACAGCTACTTCGATTGA+AGG | 0.476978 | 8.4:-18209468 | None:intergenic |
| TGTCAACGAATGAGATTCGT+TGG | 0.478741 | 8.4:+18210528 | MS.gene063479:CDS |
| CCTGATAGGGTTCTAATTGG+AGG | 0.481879 | 8.4:+18209909 | MS.gene063479:CDS |
| TTTCTATATCGGTGCTGAAA+AGG | 0.484496 | 8.4:-18209593 | None:intergenic |
| AGGGCTATAACAGCCATTGT+TGG | 0.484929 | 8.4:-18209438 | None:intergenic |
| AAAACAAGTGGCCTTGGAGC+TGG | 0.485852 | 8.4:+18209666 | MS.gene063479:CDS |
| TGTATAACTTCTTCTAGGCC+AGG | 0.489194 | 8.4:-18209549 | None:intergenic |
| CTTCGATTGAAGGACATTTG+AGG | 0.491709 | 8.4:-18209458 | None:intergenic |
| TACTGGTGCAGATGTTTCAC+AGG | 0.492495 | 8.4:+18210118 | MS.gene063479:CDS |
| GAATTGGAGCTGGATATGTA+GGG | 0.494365 | 8.4:+18209412 | MS.gene063479:CDS |
| AAGATCTGTGGAATTGGAGC+TGG | 0.497235 | 8.4:+18209402 | MS.gene063479:CDS |
| AGAAAGACACTAGTGATACT+AGG | 0.515266 | 8.4:+18210405 | MS.gene063479:CDS |
| AAATACTTAAATGCTAGTGT+TGG | 0.516445 | 8.4:+18210179 | MS.gene063479:CDS |
| AGCAAGCATTATCTGCCAAA+AGG | 0.516633 | 8.4:-18210457 | None:intergenic |
| AGTGGCTAATTATTGGAAAG+AGG | 0.522578 | 8.4:+18210274 | MS.gene063479:CDS |
| GGATATGTGTTCTTACTGAA+TGG | 0.522703 | 8.4:+18210645 | MS.gene063479:CDS |
| GTTTATATATGTGAGAGTAA+TGG | 0.524039 | 8.4:+18210242 | MS.gene063479:CDS |
| CTCACTCTCGCATATCAGCT+TGG | 0.524776 | 8.4:+18209499 | MS.gene063479:CDS |
| CCGCGGCTTTGCCAGCTCCA+AGG | 0.533146 | 8.4:-18209677 | None:intergenic |
| GTCAACGAATGAGATTCGTT+GGG | 0.538349 | 8.4:+18210529 | MS.gene063479:CDS |
| TCAGCTTTATGTGAGGCTAC+TGG | 0.540740 | 8.4:+18210101 | MS.gene063479:CDS |
| GGGTAAGTGAAGATCAGATT+CGG | 0.542590 | 8.4:+18210498 | MS.gene063479:CDS |
| GAGTTCAGCAGACCAAAGAT+TGG | 0.543599 | 8.4:-18210021 | None:intergenic |
| GGATCTTCTAAATCCTGATA+GGG | 0.544677 | 8.4:+18209896 | MS.gene063479:CDS |
| GATATGTGTTCTTACTGAAT+GGG | 0.547765 | 8.4:+18210646 | MS.gene063479:CDS |
| CTAGGCCAGGCTCATAGATA+GGG | 0.550472 | 8.4:-18209536 | None:intergenic |
| AGGATTTAGAAGATCCTGAA+TGG | 0.551761 | 8.4:-18209889 | None:intergenic |
| TGAATGATTACCAAAAGAGT+AGG | 0.551863 | 8.4:+18210306 | MS.gene063479:CDS |
| CTTGAGCATTTACGATCCGC+GGG | 0.553275 | 8.4:+18210478 | MS.gene063479:CDS |
| AAACTCCCTATCTATGAGCC+TGG | 0.560164 | 8.4:+18209531 | MS.gene063479:CDS |
| CCTTGGAGCTGGCAAAGCCG+CGG | 0.568019 | 8.4:+18209677 | MS.gene063479:CDS |
| GGAAATGATAAGAATCTTGG+AGG | 0.569494 | 8.4:+18209930 | MS.gene063479:CDS |
| CCTTTGCAAACATCGATCGC+AGG | 0.572377 | 8.4:-18210434 | None:intergenic |
| GCTTGAGCATTTACGATCCG+CGG | 0.590871 | 8.4:+18210477 | MS.gene063479:CDS |
| TCGTTGGGACTGTTCAACTC+AGG | 0.597572 | 8.4:+18210544 | MS.gene063479:CDS |
| AAAATGGTAAAGAAGATCTG+TGG | 0.600097 | 8.4:+18209390 | None:intergenic |
| AGTTTCTGGTAAGAAGATTG+CGG | 0.608152 | 8.4:+18210364 | MS.gene063479:CDS |
| ATTCTAGTCCACAATAGCAA+TGG | 0.608942 | 8.4:+18209813 | MS.gene063479:CDS |
| TGGGAAGCCAATAGACCAGT+GGG | 0.612032 | 8.4:+18210796 | MS.gene063479:CDS |
| GAAGCTAGCAATCCACCCAC+TGG | 0.614421 | 8.4:-18210811 | None:intergenic |
| AGCCTCACATAAAGCTGACA+TGG | 0.620750 | 8.4:-18210096 | None:intergenic |
| CCTGCGATCGATGTTTGCAA+AGG | 0.622619 | 8.4:+18210434 | MS.gene063479:CDS |
| AGTCCACAATAGCAATGGCA+TGG | 0.641744 | 8.4:+18209818 | MS.gene063479:CDS |
| TTATTGGAAAGAGGTCATCA+AGG | 0.645778 | 8.4:+18210283 | MS.gene063479:CDS |
| TTCCCAATAAGTTAAATCCG+CGG | 0.649401 | 8.4:-18209694 | None:intergenic |
| ACCAGAAACTGTATTAAACA+TGG | 0.649569 | 8.4:-18210351 | None:intergenic |
| GAGTAATGGACTCCTTGAAG+TGG | 0.654617 | 8.4:+18210256 | MS.gene063479:CDS |
| TTGGGAAGCCAATAGACCAG+TGG | 0.665863 | 8.4:+18210795 | MS.gene063479:CDS |
| TGCCATGTCAGCTTTATGTG+AGG | 0.667778 | 8.4:+18210094 | MS.gene063479:CDS |
| ATCTGATCTTCACTTACCCG+CGG | 0.668808 | 8.4:-18210494 | None:intergenic |
| AATTGGAGCTGGATATGTAG+GGG | 0.692074 | 8.4:+18209413 | MS.gene063479:CDS |
| GAAGCCAATAGACCAGTGGG+TGG | 0.702700 | 8.4:+18210799 | MS.gene063479:CDS |
| ATTGGAGCTGGATATGTAGG+GGG | 0.711652 | 8.4:+18209414 | MS.gene063479:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAAACATGTTTTTCTATAT+CGG | - | chr8.4:18209607-18209626 | None:intergenic | 15.0% |
| !! | TCAAAAAGATATACTTAACT+TGG | + | chr8.4:18210220-18210239 | MS.gene063479:CDS | 20.0% |
| !! | TTAAGTAAAAACACTAAACT+TGG | + | chr8.4:18210152-18210171 | MS.gene063479:CDS | 20.0% |
| !!! | TGAAAGAATATTTGATAGTA+TGG | + | chr8.4:18210691-18210710 | MS.gene063479:CDS | 20.0% |
| ! | AAATACTTAAATGCTAGTGT+TGG | + | chr8.4:18210179-18210198 | MS.gene063479:CDS | 25.0% |
| ! | AACACTAGCATTTAAGTATT+TGG | - | chr8.4:18210180-18210199 | None:intergenic | 25.0% |
| ! | ATTGTTGTATAACTTCTTCT+AGG | - | chr8.4:18209557-18209576 | None:intergenic | 25.0% |
| ! | GAAAGCTATATATGCTAATT+GGG | + | chr8.4:18209974-18209993 | MS.gene063479:CDS | 25.0% |
| ! | GATTTATCGTATACTCAATT+GGG | + | chr8.4:18210777-18210796 | MS.gene063479:CDS | 25.0% |
| ! | GTTTATATATGTGAGAGTAA+TGG | + | chr8.4:18210242-18210261 | MS.gene063479:CDS | 25.0% |
| ! | TGAAAGCTATATATGCTAAT+TGG | + | chr8.4:18209973-18209992 | MS.gene063479:CDS | 25.0% |
| !! | GTTGATAAGTTGAAGAAAAT+TGG | + | chr8.4:18210755-18210774 | MS.gene063479:CDS | 25.0% |
| !!! | TTTTGATGGTAGAAATGTTT+TGG | + | chr8.4:18210730-18210749 | MS.gene063479:CDS | 25.0% |
| AATCCTGAATTTCTTTCTGA+AGG | + | chr8.4:18209861-18209880 | MS.gene063479:CDS | 30.0% | |
| ACCAGAAACTGTATTAAACA+TGG | - | chr8.4:18210354-18210373 | None:intergenic | 30.0% | |
| GAATCATTACTACCAATCTT+TGG | + | chr8.4:18210009-18210028 | MS.gene063479:CDS | 30.0% | |
| GATATGTGTTCTTACTGAAT+GGG | + | chr8.4:18210646-18210665 | MS.gene063479:CDS | 30.0% | |
| GGATTTATCGTATACTCAAT+TGG | + | chr8.4:18210776-18210795 | MS.gene063479:CDS | 30.0% | |
| GTAGTAATGATTCTATCTTC+AGG | - | chr8.4:18210002-18210021 | None:intergenic | 30.0% | |
| TCCATGTTTAATACAGTTTC+TGG | + | chr8.4:18210350-18210369 | MS.gene063479:CDS | 30.0% | |
| TGAATGATTACCAAAAGAGT+AGG | + | chr8.4:18210306-18210325 | MS.gene063479:CDS | 30.0% | |
| ! | TTTTCACAAACCTACTCTTT+TGG | - | chr8.4:18210319-18210338 | None:intergenic | 30.0% |
| !!! | AAACCAGCATTTGTTTTTGA+TGG | + | chr8.4:18210716-18210735 | MS.gene063479:CDS | 30.0% |
| !!! | ATAATGCTTTTTTGGCTCAA+AGG | + | chr8.4:18210057-18210076 | MS.gene063479:CDS | 30.0% |
| !!! | GTTAGCTGATAATGCTTTTT+TGG | + | chr8.4:18210049-18210068 | MS.gene063479:CDS | 30.0% |
| !!! | TTAAATGCTAGTGTTGGTTT+TGG | + | chr8.4:18210185-18210204 | MS.gene063479:CDS | 30.0% |
| AACACACCAACAAAAACAAG+TGG | + | chr8.4:18209654-18209673 | MS.gene063479:CDS | 35.0% | |
| AGAAAGACACTAGTGATACT+AGG | + | chr8.4:18210405-18210424 | MS.gene063479:CDS | 35.0% | |
| AGGATCTTCTAAATCCTGAT+AGG | + | chr8.4:18209895-18209914 | MS.gene063479:CDS | 35.0% | |
| AGGATTTAGAAGATCCTGAA+TGG | - | chr8.4:18209892-18209911 | None:intergenic | 35.0% | |
| AGGCAACTAAAAATGCTCAT+GGG | + | chr8.4:18210624-18210643 | MS.gene063479:CDS | 35.0% | |
| AGTGGCTAATTATTGGAAAG+AGG | + | chr8.4:18210274-18210293 | MS.gene063479:CDS | 35.0% | |
| ATCACTAGTGTCTTTCTTGA+AGG | - | chr8.4:18210402-18210421 | None:intergenic | 35.0% | |
| ATTACTTCAGCTGTTCTAAC+TGG | - | chr8.4:18209786-18209805 | None:intergenic | 35.0% | |
| ATTCTAGTCCACAATAGCAA+TGG | + | chr8.4:18209813-18209832 | MS.gene063479:CDS | 35.0% | |
| CTACCATCAAAAACAAATGC+TGG | - | chr8.4:18210722-18210741 | None:intergenic | 35.0% | |
| GGAAATGATAAGAATCTTGG+AGG | + | chr8.4:18209930-18209949 | MS.gene063479:CDS | 35.0% | |
| GGAGGAAATGATAAGAATCT+TGG | + | chr8.4:18209927-18209946 | MS.gene063479:CDS | 35.0% | |
| GGATATGTGTTCTTACTGAA+TGG | + | chr8.4:18210645-18210664 | MS.gene063479:CDS | 35.0% | |
| GGATCTTCTAAATCCTGATA+GGG | + | chr8.4:18209896-18209915 | MS.gene063479:CDS | 35.0% | |
| GTAAAGAAGATCTGTGGAAT+TGG | + | chr8.4:18209396-18209415 | MS.gene063479:CDS | 35.0% | |
| GTTCCTTCAGAAAGAAATTC+AGG | - | chr8.4:18209867-18209886 | None:intergenic | 35.0% | |
| TCCAATAATTAGCCACTTCA+AGG | - | chr8.4:18210271-18210290 | None:intergenic | 35.0% | |
| TCCTTGAAGTGGCTAATTAT+TGG | + | chr8.4:18210267-18210286 | MS.gene063479:CDS | 35.0% | |
| TTATTGGAAAGAGGTCATCA+AGG | + | chr8.4:18210283-18210302 | MS.gene063479:CDS | 35.0% | |
| TTCCCAATAAGTTAAATCCG+CGG | - | chr8.4:18209697-18209716 | None:intergenic | 35.0% | |
| TTCGATTGAAGGACATTTGA+GGG | - | chr8.4:18209460-18209479 | None:intergenic | 35.0% | |
| ! | AATCCTGATAGGGTTCTAAT+TGG | + | chr8.4:18209906-18209925 | MS.gene063479:CDS | 35.0% |
| ! | CGAAACAGGTTAGTGTTTTT+GGG | + | chr8.4:18210591-18210610 | MS.gene063479:CDS | 35.0% |
| !! | AGTTTCTGGTAAGAAGATTG+CGG | + | chr8.4:18210364-18210383 | MS.gene063479:CDS | 35.0% |
| !! | GAAACAGGTTAGTGTTTTTG+GGG | + | chr8.4:18210592-18210611 | MS.gene063479:CDS | 35.0% |
| !! | TTTCTATATCGGTGCTGAAA+AGG | - | chr8.4:18209596-18209615 | None:intergenic | 35.0% |
| !!! | TGTTTTTGGGGATGTTTATG+AGG | + | chr8.4:18210604-18210623 | MS.gene063479:CDS | 35.0% |
| AATTGGAGCTGGATATGTAG+GGG | + | chr8.4:18209413-18209432 | MS.gene063479:CDS | 40.0% | |
| ACAACAGCTACTTCGATTGA+AGG | - | chr8.4:18209471-18209490 | None:intergenic | 40.0% | |
| AGCAAGCATTATCTGCCAAA+AGG | - | chr8.4:18210460-18210479 | None:intergenic | 40.0% | |
| CTTCGATTGAAGGACATTTG+AGG | - | chr8.4:18209461-18209480 | None:intergenic | 40.0% | |
| GAATTGGAGCTGGATATGTA+GGG | + | chr8.4:18209412-18209431 | MS.gene063479:CDS | 40.0% | |
| GAGGCAACTAAAAATGCTCA+TGG | + | chr8.4:18210623-18210642 | MS.gene063479:CDS | 40.0% | |
| GGGTAAGTGAAGATCAGATT+CGG | + | chr8.4:18210498-18210517 | MS.gene063479:CDS | 40.0% | |
| GTCAACGAATGAGATTCGTT+GGG | + | chr8.4:18210529-18210548 | MS.gene063479:CDS | 40.0% | |
| TGTATAACTTCTTCTAGGCC+AGG | - | chr8.4:18209552-18209571 | None:intergenic | 40.0% | |
| TGTCAACGAATGAGATTCGT+TGG | + | chr8.4:18210528-18210547 | MS.gene063479:CDS | 40.0% | |
| TTCGCACTAGTGAAACTCAT+TGG | - | chr8.4:18210575-18210594 | None:intergenic | 40.0% | |
| ! | AAGCCGCGGATTTAACTTAT+TGG | + | chr8.4:18209691-18209710 | MS.gene063479:CDS | 40.0% |
| ! | AGCCGCGGATTTAACTTATT+GGG | + | chr8.4:18209692-18209711 | MS.gene063479:CDS | 40.0% |
| ! | GCGAAACAGGTTAGTGTTTT+TGG | + | chr8.4:18210590-18210609 | MS.gene063479:CDS | 40.0% |
| ! | TTCTGAAGGAACTTCCATTC+AGG | + | chr8.4:18209875-18209894 | MS.gene063479:CDS | 40.0% |
| !!! | AATGCTAGTGTTGGTTTTGG+TGG | + | chr8.4:18210188-18210207 | MS.gene063479:CDS | 40.0% |
| AAACTCCCTATCTATGAGCC+TGG | + | chr8.4:18209531-18209550 | MS.gene063479:CDS | 45.0% | |
| AAGATCTGTGGAATTGGAGC+TGG | + | chr8.4:18209402-18209421 | MS.gene063479:CDS | 45.0% | |
| AGCCTCACATAAAGCTGACA+TGG | - | chr8.4:18210099-18210118 | None:intergenic | 45.0% | |
| AGGGCTATAACAGCCATTGT+TGG | - | chr8.4:18209441-18209460 | None:intergenic | 45.0% | |
| AGTCCACAATAGCAATGGCA+TGG | + | chr8.4:18209818-18209837 | MS.gene063479:CDS | 45.0% | |
| ATATGTAGGGGGTCCAACAA+TGG | + | chr8.4:18209425-18209444 | MS.gene063479:CDS | 45.0% | |
| ATCTGATCTTCACTTACCCG+CGG | - | chr8.4:18210497-18210516 | None:intergenic | 45.0% | |
| ATTGGAGCTGGATATGTAGG+GGG | + | chr8.4:18209414-18209433 | MS.gene063479:CDS | 45.0% | |
| CCAACAAAAACAAGTGGCCT+TGG | + | chr8.4:18209660-18209679 | MS.gene063479:CDS | 45.0% | |
| CCTCCAATTAGAACCCTATC+AGG | - | chr8.4:18209912-18209931 | None:intergenic | 45.0% | |
| GAGTTCAGCAGACCAAAGAT+TGG | - | chr8.4:18210024-18210043 | None:intergenic | 45.0% | |
| GAGTTTCACTAGTGCGAAAC+AGG | + | chr8.4:18210577-18210596 | MS.gene063479:CDS | 45.0% | |
| GGAATTGGAGCTGGATATGT+AGG | + | chr8.4:18209411-18209430 | MS.gene063479:CDS | 45.0% | |
| GGTAAGAAGATTGCGGTTCT+AGG | + | chr8.4:18210371-18210390 | MS.gene063479:CDS | 45.0% | |
| TACTGGTGCAGATGTTTCAC+AGG | + | chr8.4:18210118-18210137 | MS.gene063479:CDS | 45.0% | |
| ! | CCTGATAGGGTTCTAATTGG+AGG | + | chr8.4:18209909-18209928 | MS.gene063479:CDS | 45.0% |
| ! | CGATGTTTGCAAAGGCCTTT+TGG | + | chr8.4:18210442-18210461 | MS.gene063479:CDS | 45.0% |
| ! | TCAGCTTTATGTGAGGCTAC+TGG | + | chr8.4:18210101-18210120 | MS.gene063479:CDS | 45.0% |
| ! | TGACCATGCCATTGCTATTG+TGG | - | chr8.4:18209824-18209843 | None:intergenic | 45.0% |
| ! | TGCCATGTCAGCTTTATGTG+AGG | + | chr8.4:18210094-18210113 | MS.gene063479:CDS | 45.0% |
| !! | GAGTAATGGACTCCTTGAAG+TGG | + | chr8.4:18210256-18210275 | MS.gene063479:CDS | 45.0% |
| !!! | CCAAGGCCACTTGTTTTTGT+TGG | - | chr8.4:18209663-18209682 | None:intergenic | 45.0% |
| CCTGCGATCGATGTTTGCAA+AGG | + | chr8.4:18210434-18210453 | MS.gene063479:CDS | 50.0% | |
| CCTTTGCAAACATCGATCGC+AGG | - | chr8.4:18210437-18210456 | None:intergenic | 50.0% | |
| CTAGGCCAGGCTCATAGATA+GGG | - | chr8.4:18209539-18209558 | None:intergenic | 50.0% | |
| CTCACTCTCGCATATCAGCT+TGG | + | chr8.4:18209499-18209518 | MS.gene063479:CDS | 50.0% | |
| CTTGAGCATTTACGATCCGC+GGG | + | chr8.4:18210478-18210497 | MS.gene063479:CDS | 50.0% | |
| GCTTGAGCATTTACGATCCG+CGG | + | chr8.4:18210477-18210496 | MS.gene063479:CDS | 50.0% | |
| TCGTTGGGACTGTTCAACTC+AGG | + | chr8.4:18210544-18210563 | MS.gene063479:CDS | 50.0% | |
| TCTAGGCCAGGCTCATAGAT+AGG | - | chr8.4:18209540-18209559 | None:intergenic | 50.0% | |
| TGGGAAGCCAATAGACCAGT+GGG | + | chr8.4:18210796-18210815 | MS.gene063479:CDS | 50.0% | |
| TTGGGAAGCCAATAGACCAG+TGG | + | chr8.4:18210795-18210814 | MS.gene063479:CDS | 50.0% | |
| ! | AAAACAAGTGGCCTTGGAGC+TGG | + | chr8.4:18209666-18209685 | MS.gene063479:CDS | 50.0% |
| ! | CAATCCACCCACTGGTCTAT+TGG | - | chr8.4:18210806-18210825 | None:intergenic | 50.0% |
| GAAGCCAATAGACCAGTGGG+TGG | + | chr8.4:18210799-18210818 | MS.gene063479:CDS | 55.0% | |
| CCTTGGAGCTGGCAAAGCCG+CGG | + | chr8.4:18209677-18209696 | MS.gene063479:CDS | 65.0% | |
| CCGCGGCTTTGCCAGCTCCA+AGG | - | chr8.4:18209680-18209699 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 18209393 | 18210829 | 18209393 | ID=MS.gene063479 |
| chr8.4 | mRNA | 18209393 | 18210829 | 18209393 | ID=MS.gene063479.t1;Parent=MS.gene063479 |
| chr8.4 | exon | 18209393 | 18210829 | 18209393 | ID=MS.gene063479.t1.exon1;Parent=MS.gene063479.t1 |
| chr8.4 | CDS | 18209393 | 18210829 | 18209393 | ID=cds.MS.gene063479.t1;Parent=MS.gene063479.t1 |
| Gene Sequence |
| Protein sequence |
