AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene057869


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene057869.t1 MTR_4g074640 97.015 201 6 0 1 201 432 632 1.87e-135 402
MS.gene057869.t1 MTR_3g118360 31.132 212 119 5 1 198 217 415 1.32e-17 80.9
MS.gene057869.t1 MTR_3g118360 31.132 212 119 5 1 198 495 693 2.51e-17 80.1
MS.gene057869.t1 MTR_3g118360 31.132 212 119 5 1 198 495 693 3.18e-17 79.7
MS.gene057869.t1 MTR_3g118360 31.132 212 119 5 1 198 495 693 3.37e-17 79.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene057869.t1 AT1G50200 71.707 205 54 2 1 201 480 684 2.08e-97 304
MS.gene057869.t1 AT1G50200 71.707 205 54 2 1 201 480 684 2.08e-97 304
MS.gene057869.t1 AT5G22800 32.870 216 119 6 1 203 493 695 1.29e-20 89.7
MS.gene057869.t1 AT5G22800 32.870 216 119 6 1 203 518 720 1.38e-20 89.7

Find 36 sgRNAs with CRISPR-Local

Find 166 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTCATAACGTTCAAGTTTA+TGG 0.109288 4.2:-34011743 MS.gene057869:CDS
CATAGTTCTTACAGCCTTAA+TGG 0.141937 4.2:+34011156 None:intergenic
GAAGAACGATAGATCCTTTC+TGG 0.214827 4.2:+34011220 None:intergenic
ATTTCAAATTTGCTTGGTTC+AGG 0.247448 4.2:-34013813 MS.gene057869:CDS
ATCAAGAACTGCTCAAAATA+AGG 0.306307 4.2:-34014038 MS.gene057869:intron
ATGTATGATTAGGGGCTATA+AGG 0.328822 4.2:+34011386 None:intergenic
TGGTGATGTTGGTGTAATTC+TGG 0.341373 4.2:-34013220 MS.gene057869:CDS
TCGTGCTTCACATTGGTAAT+GGG 0.382910 4.2:-34011715 MS.gene057869:CDS
TTCGTGCTTCACATTGGTAA+TGG 0.413069 4.2:-34011716 MS.gene057869:CDS
ATGTGTGTGCATGTATGATT+AGG 0.419119 4.2:+34011376 None:intergenic
CTATGCTGAGCAAGGTGGTC+AGG 0.422720 4.2:-34013184 MS.gene057869:intron
TGTATGATTAGGGGCTATAA+GGG 0.429923 4.2:+34011387 None:intergenic
ATGATAATTTCAAATTTGCT+TGG 0.470436 4.2:-34013819 MS.gene057869:CDS
TTTCAAATTTGCTTGGTTCA+GGG 0.472762 4.2:-34013812 MS.gene057869:intron
AATTTGAAATTATCATCTGT+TGG 0.486165 4.2:+34013826 None:intergenic
TGTGTGTGCATGTATGATTA+GGG 0.489098 4.2:+34011377 None:intergenic
TGACGAATGCAGGAAGTACT+TGG 0.505300 4.2:-34011255 MS.gene057869:intron
TGTTACTATCAGCAAGCTGG+TGG 0.517907 4.2:-34013904 MS.gene057869:intron
GTGGTAAAAGCAATATATAC+TGG 0.521169 4.2:-34013273 MS.gene057869:CDS
ACGGTAAGGCTTGTCCATTA+AGG 0.536533 4.2:-34011170 MS.gene057869:CDS
GTTAATACTGATGGTGATGT+TGG 0.542418 4.2:-34013231 MS.gene057869:CDS
GAACTTGAAATGAAGCATGT+TGG 0.543494 4.2:+34011762 None:intergenic
GTTGATTCAGTTAATACTGA+TGG 0.545376 4.2:-34013240 MS.gene057869:CDS
CTTCACATTGGTAATGGGAC+TGG 0.552145 4.2:-34011710 MS.gene057869:CDS
AATGGGACTGGTATCTCTGT+TGG 0.562252 4.2:-34011698 MS.gene057869:CDS
AAATTACATGTCGATGTCGA+AGG 0.578758 4.2:-34014094 MS.gene057869:CDS
AGCTGGTGGTGCTATTGTCA+TGG 0.590439 4.2:-34013890 MS.gene057869:CDS
CATAACGTTCAAGTTTATGG+AGG 0.590521 4.2:-34011740 MS.gene057869:CDS
GGCAATCATGTAGACCAGAA+AGG 0.595519 4.2:-34011234 MS.gene057869:CDS
GGAGGTTTCGTGCTTCACAT+TGG 0.619470 4.2:-34011722 MS.gene057869:CDS
ACAAGCTTCTATGCTGAGCA+AGG 0.625524 4.2:-34013192 MS.gene057869:CDS
GTCTTAGGACCATGAGAGTG+TGG 0.631834 4.2:-34013292 MS.gene057869:intron
ATGTTGGAAATCAAGAGACC+CGG 0.647630 4.2:+34011778 None:intergenic
TGGCGACAAAGTAGTATGCA+AGG 0.651339 4.2:-34011678 MS.gene057869:intron
AGCTTCTATGCTGAGCAAGG+TGG 0.702055 4.2:-34013189 MS.gene057869:CDS
GTGTGTGCATGTATGATTAG+GGG 0.702667 4.2:+34011378 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGTAAATATATTTTTTAGAA+AGG + chr4.2:34012955-34012974 None:intergenic 10.0%
!!! ATTTTATTTAATTTAACTGA+TGG - chr4.2:34012161-34012180 MS.gene057869:intron 10.0%
!!! GTAAATATATTTTTTAGAAA+GGG + chr4.2:34012954-34012973 None:intergenic 10.0%
!!! TAAATATATTTTTTAGAAAG+GGG + chr4.2:34012953-34012972 None:intergenic 10.0%
!!! TTTTTTTTCTAGAAAAAAAA+TGG + chr4.2:34013086-34013067 None:intergenic 10.0%
!! AAAATATTAGTTGTATAAGA+TGG - chr4.2:34012645-34012664 MS.gene057869:intron 15.0%
!! AATTTAATAAAAGAGAATAC+TGG - chr4.2:34012588-34012607 MS.gene057869:intron 15.0%
!!! AAAAATTCAATTGTGTTTTT+TGG - chr4.2:34013082-34013101 MS.gene057869:intron 15.0%
!!! AAAGAGGTATTTTAAATAAA+AGG + chr4.2:34013690-34013709 None:intergenic 15.0%
!!! AAGAGGTATTTTAAATAAAA+GGG + chr4.2:34013689-34013708 None:intergenic 15.0%
!!! TATTTAATTTCGTGAATATA+TGG + chr4.2:34011556-34011575 None:intergenic 15.0%
!! AAAAAGTAATGAAAGATATG+TGG + chr4.2:34013812-34013831 None:intergenic 20.0%
!! AAAACTAAAAGATATGTTCA+AGG - chr4.2:34012358-34012377 MS.gene057869:intron 20.0%
!! AAAATGTCTTACATGAAAAT+AGG - chr4.2:34012755-34012774 MS.gene057869:intron 20.0%
!! AAACTAAAAGATATGTTCAA+GGG - chr4.2:34012359-34012378 MS.gene057869:intron 20.0%
!! AAATGTCTTACATGAAAATA+GGG - chr4.2:34012756-34012775 MS.gene057869:intron 20.0%
!! ACCATTGAAAATATTAATAC+TGG - chr4.2:34011311-34011330 MS.gene057869:intron 20.0%
!! CAATATGAAAAGAATTAGTA+CGG + chr4.2:34013969-34013988 None:intergenic 20.0%
!! GAATAATAAAGAAAACCATT+TGG + chr4.2:34011715-34011734 None:intergenic 20.0%
!! TAACAAAAGAAATTTGAGAA+GGG + chr4.2:34011354-34011373 None:intergenic 20.0%
!! TCAAATGGAAAAAAATAACA+GGG - chr4.2:34013294-34013313 MS.gene057869:intron 20.0%
!! TTCAAATGGAAAAAAATAAC+AGG - chr4.2:34013293-34013312 MS.gene057869:intron 20.0%
!!! AAAGAGGTATTTTAAGTAAA+AGG + chr4.2:34013779-34013798 None:intergenic 20.0%
!!! AAATCAAATCTCAATTTTTC+AGG + chr4.2:34014078-34014097 None:intergenic 20.0%
!!! AAATCAATTATTTTTGCTCA+AGG + chr4.2:34012392-34012411 None:intergenic 20.0%
!!! AAGAGGTATTTTAAGTAAAA+GGG + chr4.2:34013778-34013797 None:intergenic 20.0%
!!! AATCAATTATTTTTGCTCAA+GGG + chr4.2:34012391-34012410 None:intergenic 20.0%
!!! AATTTGAAATTATCATCTGT+TGG + chr4.2:34011450-34011469 None:intergenic 20.0%
!!! ACCAGTATTAATATTTTCAA+TGG + chr4.2:34011315-34011334 None:intergenic 20.0%
!!! AGAGGTATTTTAAATAAAAG+GGG + chr4.2:34013688-34013707 None:intergenic 20.0%
!!! ATGATAATTTCAAATTTGCT+TGG - chr4.2:34011454-34011473 MS.gene057869:intron 20.0%
!!! ATTTAAAACATCAATTTCGA+TGG - chr4.2:34012674-34012693 MS.gene057869:intron 20.0%
!!! GTTTTTTTAATTACTTTTGC+AGG - chr4.2:34013845-34013864 MS.gene057869:CDS 20.0%
!!! TTTTCTTTATTATTCCCAAA+TGG - chr4.2:34011720-34011739 MS.gene057869:CDS 20.0%
! AAATAGGTGAGAAATAAGAT+AGG - chr4.2:34012853-34012872 MS.gene057869:intron 25.0%
! AACAAAAGAAATTTGAGAAG+GGG + chr4.2:34011353-34011372 None:intergenic 25.0%
! ACACTAAACTAACAAATTGA+TGG + chr4.2:34013433-34013452 None:intergenic 25.0%
! AGAAATAAGATAGGTTTGAT+GGG - chr4.2:34012862-34012881 MS.gene057869:intron 25.0%
! ATTGAAGTGAGAAAAATGAA+AGG - chr4.2:34011802-34011821 MS.gene057869:intron 25.0%
! GGGGAAATAAAATAATCAAA+GGG + chr4.2:34013752-34013771 None:intergenic 25.0%
! GTAACAAAAGAAATTTGAGA+AGG + chr4.2:34011355-34011374 None:intergenic 25.0%
! TGGAGAAAAATAGAAATCAA+TGG + chr4.2:34011955-34011974 None:intergenic 25.0%
! TTGAAGTGAGAAAAATGAAA+GGG - chr4.2:34011803-34011822 MS.gene057869:intron 25.0%
!! ACATGTTAAATTTTGCTCTT+AGG - chr4.2:34013916-34013935 MS.gene057869:intron 25.0%
!! CATGTTAAATTTTGCTCTTA+GGG - chr4.2:34013917-34013936 MS.gene057869:intron 25.0%
!! GCGTAACAATTATTTTCAAA+TGG - chr4.2:34013279-34013298 MS.gene057869:CDS 25.0%
!! TCTTTTCATATTGATCTACA+TGG - chr4.2:34013976-34013995 MS.gene057869:intron 25.0%
!! TTTAATTTAACTGATGGCTA+TGG - chr4.2:34012167-34012186 MS.gene057869:intron 25.0%
!! TTTGCATAGATTTTTGATAC+CGG - chr4.2:34013476-34013495 MS.gene057869:intron 25.0%
!!! AAAGCATGTTGATTTATAAC+TGG + chr4.2:34012320-34012339 None:intergenic 25.0%
!!! AGAGGTATTTTAAGTAAAAG+GGG + chr4.2:34013777-34013796 None:intergenic 25.0%
!!! AGTTTTGTATGTTGTATGTT+TGG - chr4.2:34012415-34012434 MS.gene057869:intron 25.0%
!!! CTAATATTTTAGTCTGTGTA+CGG + chr4.2:34012635-34012654 None:intergenic 25.0%
!!! GTATTTTAAATAAAAGGGGA+GGG + chr4.2:34013684-34013703 None:intergenic 25.0%
!!! TAAATTTACTTTTGTGCCAT+TGG + chr4.2:34011648-34011667 None:intergenic 25.0%
!!! TAAGTAGCTTTAGAAACAAA+CGG + chr4.2:34012495-34012514 None:intergenic 25.0%
!!! TATTTTAAATAAAAGGGGAG+GGG + chr4.2:34013683-34013702 None:intergenic 25.0%
!!! TTACTATTGCTATTTTTCAG+AGG - chr4.2:34011493-34011512 MS.gene057869:intron 25.0%
!!! TTGAGATTTGATTTTTCTCA+CGG - chr4.2:34014084-34014103 MS.gene057869:CDS 25.0%
!!! TTTCATTTTTCTCACTTCAA+TGG + chr4.2:34011803-34011822 None:intergenic 25.0%
AAACTAACAAATTGATGGAG+AGG + chr4.2:34013428-34013447 None:intergenic 30.0%
AAATCCTAACACCTTACTAA+AGG - chr4.2:34011745-34011764 MS.gene057869:CDS 30.0%
AACGTACCCAACAAAATTAA+AGG - chr4.2:34011278-34011297 MS.gene057869:intron 30.0%
AATAAAAGAGAATACTGGAG+TGG - chr4.2:34012593-34012612 MS.gene057869:intron 30.0%
ATCAAGAACTGCTCAAAATA+AGG - chr4.2:34011235-34011254 MS.gene057869:CDS 30.0%
CATAAGATAACTAGAGAAAG+AGG + chr4.2:34013706-34013725 None:intergenic 30.0%
CCTTTATGAAAAAAGACTCA+TGG + chr4.2:34013036-34013055 None:intergenic 30.0%
GAAAGATATGTGGATAACTA+GGG + chr4.2:34013802-34013821 None:intergenic 30.0%
GAGAAATAAGATAGGTTTGA+TGG - chr4.2:34012861-34012880 MS.gene057869:intron 30.0%
GGGGGAAATAAAATAATCAA+AGG + chr4.2:34013753-34013772 None:intergenic 30.0%
GTCATGAAGAAATTCATAGA+AGG + chr4.2:34013632-34013651 None:intergenic 30.0%
GTGGTAAAAGCAATATATAC+TGG - chr4.2:34012000-34012019 MS.gene057869:intron 30.0%
TGAAAGATATGTGGATAACT+AGG + chr4.2:34013803-34013822 None:intergenic 30.0%
! ATTTCAAATTTGCTTGGTTC+AGG - chr4.2:34011460-34011479 MS.gene057869:intron 30.0%
! GTTCATAACGTTCAAGTTTA+TGG - chr4.2:34013530-34013549 MS.gene057869:intron 30.0%
! GTTGATTCAGTTAATACTGA+TGG - chr4.2:34012033-34012052 MS.gene057869:intron 30.0%
! TTGCATAGATTTTTGATACC+GGG - chr4.2:34013477-34013496 MS.gene057869:intron 30.0%
! TTTAGTAAGGTGTTAGGATT+TGG + chr4.2:34011746-34011765 None:intergenic 30.0%
! TTTCAAATTTGCTTGGTTCA+GGG - chr4.2:34011461-34011480 MS.gene057869:intron 30.0%
! TTTTCTCCATTTCTTGTCTT+AGG - chr4.2:34011966-34011985 MS.gene057869:intron 30.0%
!! ATTTGATTTTTCTCACGGTA+AGG - chr4.2:34014089-34014108 MS.gene057869:CDS 30.0%
!! GCTGATCCTTTAATTTTGTT+GGG + chr4.2:34011287-34011306 None:intergenic 30.0%
!! GGTATTTTAAATAAAAGGGG+AGG + chr4.2:34013685-34013704 None:intergenic 30.0%
!! GTATTTTAAGTAAAAGGGGA+GGG + chr4.2:34013773-34013792 None:intergenic 30.0%
!! TATTTTAAGTAAAAGGGGAG+GGG + chr4.2:34013772-34013791 None:intergenic 30.0%
!! TGCTGATCCTTTAATTTTGT+TGG + chr4.2:34011288-34011307 None:intergenic 30.0%
!! TTTGCTTGATGATTTCCTTT+TGG + chr4.2:34012706-34012725 None:intergenic 30.0%
!!! CCATGAGTCTTTTTTCATAA+AGG - chr4.2:34013033-34013052 MS.gene057869:intron 30.0%
AAACAAACGGACAATAGATG+AGG + chr4.2:34012482-34012501 None:intergenic 35.0%
AAATTACATGTCGATGTCGA+AGG - chr4.2:34011179-34011198 MS.gene057869:CDS 35.0%
AACAAACGGACAATAGATGA+GGG + chr4.2:34012481-34012500 None:intergenic 35.0%
AATATCAAAAGCTCCCATGA+AGG + chr4.2:34011832-34011851 None:intergenic 35.0%
AGGGGCAATAAAATAATCAG+AGG + chr4.2:34013665-34013684 None:intergenic 35.0%
ATGTATGATTAGGGGCTATA+AGG + chr4.2:34013890-34013909 None:intergenic 35.0%
ATGTGTGTGCATGTATGATT+AGG + chr4.2:34013900-34013919 None:intergenic 35.0%
GAACTTGAAATGAAGCATGT+TGG + chr4.2:34013514-34013533 None:intergenic 35.0%
GAGGGATAAGAGAATGTTAA+GGG + chr4.2:34012463-34012482 None:intergenic 35.0%
GGGGCAATAAAATAATCAGA+GGG + chr4.2:34013664-34013683 None:intergenic 35.0%
GTAGCTATAATGTTCTTCGT+TGG - chr4.2:34012247-34012266 MS.gene057869:intron 35.0%
TCAAGTGACTTCCTTTAGTA+AGG + chr4.2:34011759-34011778 None:intergenic 35.0%
TGAGGGATAAGAGAATGTTA+AGG + chr4.2:34012464-34012483 None:intergenic 35.0%
TGATTTCATATGACGAATGC+AGG - chr4.2:34014008-34014027 MS.gene057869:intron 35.0%
TGTATGATTAGGGGCTATAA+GGG + chr4.2:34013889-34013908 None:intergenic 35.0%
TGTGTGTGCATGTATGATTA+GGG + chr4.2:34013899-34013918 None:intergenic 35.0%
! ACTTCCTTTAGTAAGGTGTT+AGG + chr4.2:34011752-34011771 None:intergenic 35.0%
! AGAGGAGTGAAGTATTACAA+AGG - chr4.2:34011511-34011530 MS.gene057869:intron 35.0%
! CATAACGTTCAAGTTTATGG+AGG - chr4.2:34013533-34013552 MS.gene057869:intron 35.0%
! CATTTTTCTCACTTCAATGG+TGG + chr4.2:34011800-34011819 None:intergenic 35.0%
! GAGGAGTGAAGTATTACAAA+GGG - chr4.2:34011512-34011531 MS.gene057869:intron 35.0%
! GCTACGATTTCTTTTGCATT+AGG + chr4.2:34012568-34012587 None:intergenic 35.0%
! GTTAATACTGATGGTGATGT+TGG - chr4.2:34012042-34012061 MS.gene057869:intron 35.0%
! TTTTGTTACTATCAGCAAGC+TGG - chr4.2:34011366-34011385 MS.gene057869:CDS 35.0%
!! ATTTTAAGTAAAAGGGGAGG+GGG + chr4.2:34013771-34013790 None:intergenic 35.0%
!! CGAAGGTTTTAATAGTGCTA+TGG - chr4.2:34011196-34011215 MS.gene057869:CDS 35.0%
!! GGTATTTTAAGTAAAAGGGG+AGG + chr4.2:34013774-34013793 None:intergenic 35.0%
!! TTACTTTTGCAGGTCGATTA+TGG - chr4.2:34013855-34013874 MS.gene057869:CDS 35.0%
!! TTTCGATGGATTTTGCCAAA+AGG - chr4.2:34012688-34012707 MS.gene057869:intron 35.0%
!! TTTTGTGCCATTGGTAAAAG+TGG + chr4.2:34011639-34011658 None:intergenic 35.0%
AAATGAAAGGGAGTCCTTCA+TGG - chr4.2:34011815-34011834 MS.gene057869:intron 40.0%
AACCATTTGGCAAGAACAAG+TGG + chr4.2:34011702-34011721 None:intergenic 40.0%
AATGAAAGGGAGTCCTTCAT+GGG - chr4.2:34011816-34011835 MS.gene057869:intron 40.0%
ACATGAAAATAGGGACCCTA+AGG - chr4.2:34012765-34012784 MS.gene057869:intron 40.0%
AGAAATTTGAGAAGGGGACA+AGG + chr4.2:34011347-34011366 None:intergenic 40.0%
ATACCAATCTGTCAGATGCA+AGG + chr4.2:34013250-34013269 None:intergenic 40.0%
ATGTGGATAACTAGGGAAAG+AGG + chr4.2:34013795-34013814 None:intergenic 40.0%
ATGTTGGAAATCAAGAGACC+CGG + chr4.2:34013498-34013517 None:intergenic 40.0%
CATGAAAATAGGGACCCTAA+GGG - chr4.2:34012766-34012785 MS.gene057869:intron 40.0%
CATGGTCCTAAGACAAGAAA+TGG + chr4.2:34011975-34011994 None:intergenic 40.0%
CGAATAGAGTAAAGTTGCAG+AGG + chr4.2:34012294-34012313 None:intergenic 40.0%
GAAGAACGATAGATCCTTTC+TGG + chr4.2:34014056-34014075 None:intergenic 40.0%
GAGTGTGAGAAGAGAGAAAT+AGG - chr4.2:34012837-34012856 MS.gene057869:intron 40.0%
GTAAACCAAACACACCCTTA+GGG + chr4.2:34012783-34012802 None:intergenic 40.0%
GTGTGTGCATGTATGATTAG+GGG + chr4.2:34013898-34013917 None:intergenic 40.0%
GTGTTAGGATTTGGCCATTT+GGG + chr4.2:34011737-34011756 None:intergenic 40.0%
TGTAAACCAAACACACCCTT+AGG + chr4.2:34012784-34012803 None:intergenic 40.0%
TTCGTGCTTCACATTGGTAA+TGG - chr4.2:34013557-34013576 MS.gene057869:intron 40.0%
TTGGATAAAGTCCATGTCCT+AGG + chr4.2:34011611-34011630 None:intergenic 40.0%
! ACTATCTGAAAGCATGTCCT+AGG - chr4.2:34011591-34011610 MS.gene057869:intron 40.0%
! AGCTACTTGATTGCGTTTTC+TGG + chr4.2:34012233-34012252 None:intergenic 40.0%
! ATTGGTAAAAGTGGAGTGCT+TGG + chr4.2:34011630-34011649 None:intergenic 40.0%
! TCGTGCTTCACATTGGTAAT+GGG - chr4.2:34013558-34013577 MS.gene057869:intron 40.0%
! TGGTGATGTTGGTGTAATTC+TGG - chr4.2:34012053-34012072 MS.gene057869:intron 40.0%
!! AAGCACTCCACTTTTACCAA+TGG - chr4.2:34011629-34011648 MS.gene057869:intron 40.0%
!! GATAGGTTTGATGGGTTGTT+TGG - chr4.2:34012870-34012889 MS.gene057869:intron 40.0%
!! TTGCTTTTACCACACTCTCA+TGG + chr4.2:34011993-34012012 None:intergenic 40.0%
AAGCAAAGTAGTCGCACTCT+TGG - chr4.2:34012719-34012738 MS.gene057869:intron 45.0%
ACAAGCTTCTATGCTGAGCA+AGG - chr4.2:34012081-34012100 MS.gene057869:intron 45.0%
ACGGTAAGGCTTGTCCATTA+AGG - chr4.2:34014103-34014122 MS.gene057869:CDS 45.0%
ACTCCTTGCATCTGACAGAT+TGG - chr4.2:34013244-34013263 MS.gene057869:CDS 45.0%
AGTAGTCGCACTCTTGGATA+TGG - chr4.2:34012725-34012744 MS.gene057869:intron 45.0%
GGCAATCATGTAGACCAGAA+AGG - chr4.2:34014039-34014058 MS.gene057869:CDS 45.0%
GGTGTTAGGATTTGGCCATT+TGG + chr4.2:34011738-34011757 None:intergenic 45.0%
GGTTGTGATTAACGTGACAC+AGG + chr4.2:34013015-34013034 None:intergenic 45.0%
TGGCGACAAAGTAGTATGCA+AGG - chr4.2:34013595-34013614 MS.gene057869:intron 45.0%
TGTTACTATCAGCAAGCTGG+TGG - chr4.2:34011369-34011388 MS.gene057869:CDS 45.0%
! AATGGGACTGGTATCTCTGT+TGG - chr4.2:34013575-34013594 MS.gene057869:intron 45.0%
! TGAAAGCATGTCCTAGGACA+TGG - chr4.2:34011597-34011616 MS.gene057869:intron 45.0%
! TGCCACTTGTTCTTGCCAAA+TGG - chr4.2:34011697-34011716 MS.gene057869:CDS 45.0%
!! CTTCACATTGGTAATGGGAC+TGG - chr4.2:34013563-34013582 MS.gene057869:intron 45.0%
!! TGACGAATGCAGGAAGTACT+TGG - chr4.2:34014018-34014037 MS.gene057869:intron 45.0%
AGCTTCTATGCTGAGCAAGG+TGG - chr4.2:34012084-34012103 MS.gene057869:intron 50.0%
GGAGGTTTCGTGCTTCACAT+TGG - chr4.2:34013551-34013570 MS.gene057869:intron 50.0%
GTCTTAGGACCATGAGAGTG+TGG - chr4.2:34011981-34012000 MS.gene057869:intron 50.0%
!! AGCTGGTGGTGCTATTGTCA+TGG - chr4.2:34011383-34011402 MS.gene057869:CDS 50.0%
CTATGCTGAGCAAGGTGGTC+AGG - chr4.2:34012089-34012108 MS.gene057869:intron 55.0%
! AGGGACCCTAAGGGTGTGTT+TGG - chr4.2:34012775-34012794 MS.gene057869:intron 55.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 34011164 34014131 34011164 ID=MS.gene057869
chr4.2 mRNA 34011164 34014131 34011164 ID=MS.gene057869.t1;Parent=MS.gene057869
chr4.2 exon 34014039 34014131 34014039 ID=MS.gene057869.t1.exon1;Parent=MS.gene057869.t1
chr4.2 CDS 34014039 34014131 34014039 ID=cds.MS.gene057869.t1;Parent=MS.gene057869.t1
chr4.2 exon 34013813 34013914 34013813 ID=MS.gene057869.t1.exon2;Parent=MS.gene057869.t1
chr4.2 CDS 34013813 34013914 34013813 ID=cds.MS.gene057869.t1;Parent=MS.gene057869.t1
chr4.2 exon 34013185 34013307 34013185 ID=MS.gene057869.t1.exon3;Parent=MS.gene057869.t1
chr4.2 CDS 34013185 34013307 34013185 ID=cds.MS.gene057869.t1;Parent=MS.gene057869.t1
chr4.2 exon 34011679 34011810 34011679 ID=MS.gene057869.t1.exon4;Parent=MS.gene057869.t1
chr4.2 CDS 34011679 34011810 34011679 ID=cds.MS.gene057869.t1;Parent=MS.gene057869.t1
chr4.2 exon 34011357 34011428 34011357 ID=MS.gene057869.t1.exon5;Parent=MS.gene057869.t1
chr4.2 CDS 34011357 34011428 34011357 ID=cds.MS.gene057869.t1;Parent=MS.gene057869.t1
chr4.2 exon 34011164 34011265 34011164 ID=MS.gene057869.t1.exon6;Parent=MS.gene057869.t1
chr4.2 CDS 34011164 34011265 34011164 ID=cds.MS.gene057869.t1;Parent=MS.gene057869.t1
Gene Sequence

>MS.gene057869

ATGGCTGAAGAGAAGAAATTACATGTCGATGTCGAAGGTTTTAATAGTGCTATGGAAGCAGCACGAGAAAGATCAAGAACTGCTCAAAATAAGGTATCTTGTTTGCTTCAGTGTAACGTACCCAACAAAATTAAAGGATCAGCAAAAACCATTGAAAATATTAATACTGGTTGTCTTTCTCCTTGTCCCCTTCTCAAATTTCTTTTGTTACTATCAGCAAGCTGGTGGTGCTATTGTCATGGATGCTGATGCTACATCAGCATTGCAGAAAAGAAGCATCGCTCCAACAGATGATAATTTCAAATTTGCTTGGTTCAGGGTAAGAACAGTTACTATTGCTATTTTTCAGAGGAGTGAAGTATTACAAAGGGAAATGCTGATAAAAGATACCATATATTCACGAAATTAAATATAGTATAAATAAAACACTATCTGAAAGCATGTCCTAGGACATGGACTTTATCCAAGCACTCCACTTTTACCAATGGCACAAAAGTAAATTTAAAATAGTACATTTCTGTGATGTTTTATTATGCCACTTGTTCTTGCCAAATGGTTTTCTTTATTATTCCCAAATGGCCAAATCCTAACACCTTACTAAAGGAAGTCACTTGATTTTCTCTATAATATTAGCCACCATTGAAGTGAGAAAAATGAAAGGGAGTCCTTCATGGGAGCTTTTGATATTCTATTATATATGCGATAGCTTATGTTTATCAGATAAGCAGTTGTATTAGACTTTGCATTCTCACTTATCAATTTTCTTTCAGAATCAGTTCATACTTTTTCCATTGATTTCTATTTTTCTCCATTTCTTGTCTTAGGACCATGAGAGTGTGGTAAAAGCAATATATACTGGTTCTGAGTTTGTTGATTCAGTTAATACTGATGGTGATGTTGGTGTAATTCTGGAATCTACAAGCTTCTATGCTGAGCAAGGTGGTCAGGTATTCAGCATTGTTAATATTTTATATATGTTATTTTGCATGTTAATCTTATTTTATTTAATTTAACTGATGGCTATGGTTAGTAATCATTTATTTAAAATTATAAAACTCACTTTTGTCCAGAAAACGCAATCAAGTAGCTATAATGTTCTTCGTTGGTTTTTTTTTAATTATGATTTTCCTCTGCAACTTTACTCTATTCGTTTCCAGTTATAAATCAACATGCTTTCGTAAAGATGTTATCTTTAAAACTAAAAGATATGTTCAAGGGCTTGTTCCCTTGAGCAAAAATAATTGATTTTGAAGTTTTGTATGTTGTATGTTTGGTTATATAAAAAAAGTACTTTCTCCCTTAACATTCTCTTATCCCTCATCTATTGTCCGTTTGTTTCTAAAGCTACTTATTTTAACTTTTCAAAATGATAAGAAATTTAAGATTGTTCAATATAACAAACCTAATGCAAAAGAAATCGTAGCAATTTAATAAAAGAGAATACTGGAGTGGCGATACAACTTAATTTCCGTACACAGACTAAAATATTAGTTGTATAAGATGGTTTGAAATTTAAAACATCAATTTCGATGGATTTTGCCAAAAGGAAATCATCAAGCAAAGTAGTCGCACTCTTGGATATGGTCACACGAAAATGTCTTACATGAAAATAGGGACCCTAAGGGTGTGTTTGGTTTACAAGAGAAATTGTGAAGAGAGAAATAAGTGAGATAGAGTGTGAGAAGAGAGAAATAGGTGAGAAATAAGATAGGTTTGATGGGTTGTTTGGTATAAGAGAGAAATATAGAAGAGAGAAATAGATTGCTTTTTTGAATTGACAAATAAGCCCCTTTCTAAAAAATATATTTACTTCAAATTTTAAATTTATTTTTTTGTTTAAATTTGTTTCCTGTGTCACGTTAATCACAACCATGAGTCTTTTTTCATAAAGGAAAAAAAACCATTTTTTTTCTAGAAAAAAAATTCAATTGTGTTTTTTGGTGCAATTAATCATAAAGAAAATTGTTTTTTAGAAGTAAAGAAAATCATTATTCATATAAAAAACAACTATTAAATATATGAATTAATTGCTGCTAGTATCTAACGTAACACAGTAAGAAAGATTAAAACGTAGTGCTTGACTCCTTGCATCTGACAGATTGGTATAGTGTTAATGCGTAACAATTATTTTCAAATGGAAAAAAATAACAGGGTAAAAACATGATTTTAGTGATCACTCAGCACTCTCTTCTCTACTTCTCTCTTCTTAATTTCTGTCTTCTATATTTCTCTTGAAACAAACAGAGTGTAAATAAATTTTTCCTCTCCATCAATTTGTTAGTTTAGTGTTTGTGATATGTTTTCTGTTTTCTTTTGCATAGATTTTTGATACCGGGTCTCTTGATTTCCAACATGCTTCATTTCAAGTTCATAACGTTCAAGTTTATGGAGGTTTCGTGCTTCACATTGGTAATGGGACTGGTATCTCTGTTGGCGACAAAGTAGTATGCAAGGTAACTTCGTTTCCTTCTATGAATTTCTTCATGACTTAAAATAACCCTCTGATTATTTTATTGCCCCTCCCCTTTTATTTAAAATACCTCTTTCTCTAGTTATCTTATGAATTTCGTTGTGACTTGAAATAACCCTTTGATTATTTTATTTCCCCCTCCCCTTTTACTTAAAATACCTCTTTCCCTAGTTATCCACATATCTTTCATTACTTTTTGATGCTTTGTTTTGTTTTTTTAATTACTTTTGCAGGTCGATTATGGAAGACGTGCCCTTATAGCCCCTAATCATACATGCACACACATGTTAAATTTTGCTCTTAGGGTATGTTAAAAATGCTATTGAATTAAGCCGTACTAATTCTTTTCATATTGATCTACATGGTGATTGTTGTGATTTCATATGACGAATGCAGGAAGTACTTGGCAATCATGTAGACCAGAAAGGATCTATCGTTCTTCCTGAAAAATTGAGATTTGATTTTTCTCACGGTAAGGCTTGTCCATTAAGGCTGTAA

Protein sequence

>MS.gene057869.t1

MAEEKKLHVDVEGFNSAMEAARERSRTAQNKQAGGAIVMDADATSALQKRSIAPTDDNFKFAWFRDHESVVKAIYTGSEFVDSVNTDGDVGVILESTSFYAEQGGQIFDTGSLDFQHASFQVHNVQVYGGFVLHIGNGTGISVGDKVVCKVDYGRRALIAPNHTCTHMLNFALREVLGNHVDQKGSIVLPEKLRFDFSHGKACPLRL