Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063505.t1 | XP_013458009.1 | 95.6 | 206 | 9 | 0 | 28 | 233 | 120 | 325 | 1.30E-103 | 386 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063505.t1 | Q9FZ81 | 70.8 | 209 | 58 | 2 | 28 | 233 | 126 | 334 | 1.5e-76 | 287.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063505.t1 | A0A072V1P2 | 95.6 | 206 | 9 | 0 | 28 | 233 | 120 | 325 | 9.2e-104 | 386.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049824 | MS.gene063505 | 0.815984 | 6.98E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene81779 | MS.gene063505 | PPI |
| MS.gene81729 | MS.gene063505 | PPI |
| MS.gene063505 | MS.gene056860 | PPI |
| MS.gene063505 | MS.gene034886 | PPI |
| MS.gene81728 | MS.gene063505 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063505.t1 | MTR_4g109700 | 95.631 | 206 | 9 | 0 | 28 | 233 | 120 | 325 | 2.01e-140 | 396 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063505.t1 | AT1G18600 | 70.813 | 209 | 58 | 2 | 28 | 233 | 126 | 334 | 1.30e-93 | 278 |
| MS.gene063505.t1 | AT1G74130 | 42.593 | 216 | 109 | 6 | 28 | 233 | 110 | 320 | 1.42e-50 | 167 |
| MS.gene063505.t1 | AT1G74140 | 40.826 | 218 | 108 | 8 | 26 | 233 | 114 | 320 | 2.04e-41 | 144 |
| MS.gene063505.t1 | AT1G74140 | 40.826 | 218 | 105 | 8 | 26 | 233 | 114 | 317 | 6.68e-41 | 142 |
| MS.gene063505.t1 | AT1G74130 | 41.622 | 185 | 95 | 5 | 28 | 204 | 110 | 289 | 9.61e-40 | 139 |
| MS.gene063505.t1 | AT1G74140 | 38.889 | 216 | 101 | 7 | 26 | 233 | 114 | 306 | 1.08e-37 | 134 |
| MS.gene063505.t1 | AT1G74140 | 42.697 | 178 | 88 | 6 | 66 | 233 | 128 | 301 | 1.00e-31 | 118 |
| MS.gene063505.t1 | AT1G74140 | 42.697 | 178 | 85 | 6 | 66 | 233 | 128 | 298 | 3.34e-31 | 116 |
Find 46 sgRNAs with CRISPR-Local
Find 245 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATCAGATTGCAAGTAAATT+TGG | 0.127860 | 8.4:+17956834 | MS.gene063505:intron |
| ATGCTTGGACTCTACTTCTT+TGG | 0.221067 | 8.4:+17955752 | MS.gene063505:CDS |
| GGAGAAAGAGGAACGAATTT+TGG | 0.227418 | 8.4:-17954388 | None:intergenic |
| GACACCAGATGACGTGGTTC+TGG | 0.230010 | 8.4:+17955064 | MS.gene063505:CDS |
| CTATATCTTGCTGGCGCAAT+TGG | 0.317104 | 8.4:+17956876 | MS.gene063505:CDS |
| TATAGCTTCAGCAGAAATTC+AGG | 0.326477 | 8.4:-17956858 | None:intergenic |
| ACCAGTTCCTGCAGCGTTGC+TGG | 0.326680 | 8.4:+17957935 | MS.gene063505:CDS |
| ATCAGATTGCAAGTAAATTT+GGG | 0.330197 | 8.4:+17956835 | MS.gene063505:intron |
| TTTCTGTTCACAGATCTCTT+TGG | 0.344886 | 8.4:+17955649 | MS.gene063505:intron |
| CTTTGATGTTAGAGACTTGT+AGG | 0.345445 | 8.4:-17956928 | None:intergenic |
| GCAGGAGATTGTGGCTAAAC+AGG | 0.348440 | 8.4:+17955039 | MS.gene063505:intron |
| CTGCTGAAGCTATATCTTGC+TGG | 0.359474 | 8.4:+17956867 | MS.gene063505:CDS |
| GATATCAGGATCTGCACATT+TGG | 0.362814 | 8.4:+17958608 | MS.gene063505:CDS |
| TAGGGAGACAGTGCGATATC+AGG | 0.388761 | 8.4:+17958594 | MS.gene063505:intron |
| TTCAAGTATATAGTTGCTCT+TGG | 0.389439 | 8.4:-17957903 | None:intergenic |
| ACACCAGATGACGTGGTTCT+GGG | 0.403748 | 8.4:+17955065 | MS.gene063505:CDS |
| CATTTAATGTCCAACATGCT+TGG | 0.418509 | 8.4:+17955737 | MS.gene063505:CDS |
| AACCCCAGAACCACGTCATC+TGG | 0.431625 | 8.4:-17955068 | None:intergenic |
| ACCAGCAACGCTGCAGGAAC+TGG | 0.438093 | 8.4:-17957936 | None:intergenic |
| TTCTTCGAAAGATCATTGAT+TGG | 0.447627 | 8.4:-17954410 | None:intergenic |
| ATATCAGGATCTGCACATTT+GGG | 0.448175 | 8.4:+17958609 | MS.gene063505:CDS |
| TCTTCGAAAGATCATTGATT+GGG | 0.451663 | 8.4:-17954409 | None:intergenic |
| CCATAGCATGGTCAAGAGTT+CGG | 0.457547 | 8.4:+17958649 | MS.gene063505:CDS |
| TCTTGTTTGCAACAGGGCTA+TGG | 0.467231 | 8.4:+17957294 | MS.gene063505:intron |
| TATCTTGCTGGCGCAATTGG+TGG | 0.476126 | 8.4:+17956879 | MS.gene063505:CDS |
| GATCATTGATTGGGAGAAAG+AGG | 0.487060 | 8.4:-17954400 | None:intergenic |
| ATATAGTTGCTCTTGGATTG+AGG | 0.494470 | 8.4:-17957896 | None:intergenic |
| GGCTTCAAAGGATTTAGCAT+TGG | 0.497089 | 8.4:+17957326 | MS.gene063505:CDS |
| ACAGGGCTATGGAGCGATCA+AGG | 0.511350 | 8.4:+17957305 | MS.gene063505:intron |
| CCGAACTCTTGACCATGCTA+TGG | 0.521181 | 8.4:-17958649 | None:intergenic |
| CAGCTTACCAGCAACGCTGC+AGG | 0.529200 | 8.4:-17957942 | None:intergenic |
| CATGTTGGACATTAAATGCC+AGG | 0.532362 | 8.4:-17955732 | None:intergenic |
| TCCAATGATTAGGGAGCAAG+TGG | 0.538219 | 8.4:+17957840 | MS.gene063505:intron |
| CATTCAGTCATGTAGATGCC+TGG | 0.544602 | 8.4:+17955714 | MS.gene063505:CDS |
| AGATATGCTGAGGATAATAG+AGG | 0.557356 | 8.4:+17958078 | MS.gene063505:CDS |
| CTACAAGTCTCTAACATCAA+AGG | 0.563755 | 8.4:+17956929 | MS.gene063505:CDS |
| GAAGTAGAGTCCAAGCATGT+TGG | 0.565236 | 8.4:-17955747 | None:intergenic |
| TGGAGCGATCAAGGCTTCAA+AGG | 0.573750 | 8.4:+17957314 | MS.gene063505:CDS |
| ATCTACATGACTGAATGCAT+TGG | 0.587624 | 8.4:-17955708 | None:intergenic |
| TGATCGGAAAAGATATGCTG+AGG | 0.592421 | 8.4:+17958068 | MS.gene063505:CDS |
| TCTTTGGACAATATTAAGAG+TGG | 0.600813 | 8.4:+17955665 | MS.gene063505:CDS |
| CACCAGATGACGTGGTTCTG+GGG | 0.602466 | 8.4:+17955066 | MS.gene063505:CDS |
| TTGCAGTTGCAGCCATAGCA+TGG | 0.613540 | 8.4:+17958637 | MS.gene063505:CDS |
| TCAGGATCTGCACATTTGGG+TGG | 0.628970 | 8.4:+17958612 | MS.gene063505:CDS |
| CAGGCTGACACCAGATGACG+TGG | 0.635192 | 8.4:+17955058 | MS.gene063505:CDS |
| GCATGGTCAAGAGTTCGGAA+AGG | 0.680049 | 8.4:+17958654 | MS.gene063505:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTTTTATTAAA+AGG | - | chr8.4:17958453-17958472 | None:intergenic | 0.0% |
| !! | TTTATTAAAAGGAAAAATAA+AGG | - | chr8.4:17958442-17958461 | None:intergenic | 10.0% |
| !!! | TTCTTTTTAAAAAAAATTCT+GGG | + | chr8.4:17956999-17957018 | MS.gene063505:intron | 10.0% |
| !!! | TTTCTTTTTAAAAAAAATTC+TGG | + | chr8.4:17956998-17957017 | MS.gene063505:intron | 10.0% |
| !! | AATAAAACATATTAATCAGA+AGG | - | chr8.4:17956411-17956430 | None:intergenic | 15.0% |
| !! | ATAAATAGTGATTACTAATA+AGG | - | chr8.4:17954748-17954767 | None:intergenic | 15.0% |
| !! | ATGTTGTTAAATAAAAATCA+GGG | - | chr8.4:17954797-17954816 | None:intergenic | 15.0% |
| !! | ATTCAAAAATCAAATTGAAT+AGG | + | chr8.4:17957521-17957540 | MS.gene063505:intron | 15.0% |
| !! | CTAACATTATAAATAATTGT+TGG | + | chr8.4:17958560-17958579 | MS.gene063505:intron | 15.0% |
| !!! | AAAAAAAAACTTGATAACAA+GGG | - | chr8.4:17957746-17957765 | None:intergenic | 15.0% |
| !!! | AAGATTGAAATTTTCAAATT+TGG | - | chr8.4:17954706-17954725 | None:intergenic | 15.0% |
| !!! | ACATAATTTAAAACCTAAAA+TGG | - | chr8.4:17957564-17957583 | None:intergenic | 15.0% |
| !!! | ACTTATTATTCTTTGTTTTA+TGG | - | chr8.4:17955906-17955925 | None:intergenic | 15.0% |
| !!! | TAAAAAGAAAGTTTTAGAAT+TGG | - | chr8.4:17956988-17957007 | None:intergenic | 15.0% |
| !!! | TCAATTTTGTCATTATAATT+TGG | + | chr8.4:17954603-17954622 | MS.gene063505:intron | 15.0% |
| !!! | TGTCTTTAGATTTTAAATAT+GGG | + | chr8.4:17956245-17956264 | MS.gene063505:intron | 15.0% |
| !!! | TTATTCATTTTATAACTTCT+TGG | + | chr8.4:17956426-17956445 | MS.gene063505:intron | 15.0% |
| !!! | TTGTCTTTAGATTTTAAATA+TGG | + | chr8.4:17956244-17956263 | MS.gene063505:intron | 15.0% |
| !! | AAAGTTAATATTTACACTCT+TGG | + | chr8.4:17957187-17957206 | MS.gene063505:intron | 20.0% |
| !! | AACAAAATATTACTAAGGTA+AGG | - | chr8.4:17955851-17955870 | None:intergenic | 20.0% |
| !! | AATTGTGTAAATAAGTTTCA+TGG | + | chr8.4:17957600-17957619 | MS.gene063505:intron | 20.0% |
| !! | ACAAAGAATAATAAGTCATA+TGG | + | chr8.4:17955910-17955929 | MS.gene063505:intron | 20.0% |
| !! | ATACAGAAATTTCATAACAA+TGG | - | chr8.4:17958313-17958332 | None:intergenic | 20.0% |
| !! | ATCAAATTAGTAATTGTTTC+TGG | + | chr8.4:17955523-17955542 | MS.gene063505:intron | 20.0% |
| !! | ATTGGAATAATAATTCGTAT+CGG | + | chr8.4:17954511-17954530 | MS.gene063505:intron | 20.0% |
| !! | ATTTGATAAACCAAAATAAC+AGG | - | chr8.4:17955253-17955272 | None:intergenic | 20.0% |
| !! | CCTAAAACAAAATATTACTA+AGG | - | chr8.4:17955856-17955875 | None:intergenic | 20.0% |
| !! | GAAAAGGAAAAATATGAAAT+AGG | - | chr8.4:17956368-17956387 | None:intergenic | 20.0% |
| !! | GATGTTGTTAAATAAAAATC+AGG | - | chr8.4:17954798-17954817 | None:intergenic | 20.0% |
| !! | TGATCTATTACTATTATCTT+TGG | + | chr8.4:17955327-17955346 | MS.gene063505:intron | 20.0% |
| !! | TGTCATTCAACTAAAATATT+AGG | - | chr8.4:17955447-17955466 | None:intergenic | 20.0% |
| !! | TTACATATAAAGCAAATGTA+GGG | - | chr8.4:17955224-17955243 | None:intergenic | 20.0% |
| !!! | AAAAAATATCTGAAGTTCTT+AGG | + | chr8.4:17955996-17956015 | MS.gene063505:intron | 20.0% |
| !!! | AAAAACAAAGCATTAACATT+TGG | + | chr8.4:17958537-17958556 | MS.gene063505:intron | 20.0% |
| !!! | AGTAATATTTTGTTTTAGGT+TGG | + | chr8.4:17955857-17955876 | MS.gene063505:intron | 20.0% |
| !!! | ATGTTGCTGTTTTTTTATTT+TGG | + | chr8.4:17955102-17955121 | MS.gene063505:CDS | 20.0% |
| !!! | ATGTTTTCTCTTTAATTTTC+TGG | + | chr8.4:17956324-17956343 | MS.gene063505:intron | 20.0% |
| !!! | ATTTTTCCTTTTCTTTTTGT+AGG | + | chr8.4:17956375-17956394 | MS.gene063505:intron | 20.0% |
| !!! | CAAAAAAAAACTTGATAACA+AGG | - | chr8.4:17957747-17957766 | None:intergenic | 20.0% |
| !!! | CCTTAGTAATATTTTGTTTT+AGG | + | chr8.4:17955853-17955872 | MS.gene063505:intron | 20.0% |
| !!! | TCATTTTCTTAAATTACAAC+CGG | - | chr8.4:17954875-17954894 | None:intergenic | 20.0% |
| !!! | TGTATAATTTGTATTATTGC+AGG | + | chr8.4:17955300-17955319 | MS.gene063505:intron | 20.0% |
| !!! | TGTTTTCTCTTTAATTTTCT+GGG | + | chr8.4:17956325-17956344 | MS.gene063505:intron | 20.0% |
| ! | AAAAACTGAAATTTGCAAGT+TGG | + | chr8.4:17957986-17958005 | MS.gene063505:intron | 25.0% |
| ! | AACCTAAAATGGAATTTATG+AGG | - | chr8.4:17957553-17957572 | None:intergenic | 25.0% |
| ! | AAGTACTATCTACTAATTGT+TGG | + | chr8.4:17956518-17956537 | MS.gene063505:intron | 25.0% |
| ! | AATAAAATTATGGCGAATGA+AGG | + | chr8.4:17958036-17958055 | MS.gene063505:intron | 25.0% |
| ! | AATCTAAAGACAAAAGTGAT+TGG | - | chr8.4:17956237-17956256 | None:intergenic | 25.0% |
| ! | AGTACTATCTACTAATTGTT+GGG | + | chr8.4:17956519-17956538 | MS.gene063505:intron | 25.0% |
| ! | AGTCATATGGTTATGAAATT+TGG | + | chr8.4:17955923-17955942 | MS.gene063505:intron | 25.0% |
| ! | ATAAAATTATGGCGAATGAA+GGG | + | chr8.4:17958037-17958056 | MS.gene063505:intron | 25.0% |
| ! | ATATTACTAAGGTAAGGAAA+AGG | - | chr8.4:17955845-17955864 | None:intergenic | 25.0% |
| ! | ATCAGATTGCAAGTAAATTT+GGG | + | chr8.4:17956835-17956854 | MS.gene063505:intron | 25.0% |
| ! | ATCAGTAATATGAGAATTGA+GGG | - | chr8.4:17956594-17956613 | None:intergenic | 25.0% |
| ! | ATGGAAAATGCTATGAAAAA+AGG | - | chr8.4:17958151-17958170 | None:intergenic | 25.0% |
| ! | CATAAACCTACAAAAAGAAA+AGG | - | chr8.4:17956384-17956403 | None:intergenic | 25.0% |
| ! | CTCGAAATTTGTAGAAATTA+TGG | - | chr8.4:17958243-17958262 | None:intergenic | 25.0% |
| ! | GTTACATATAAAGCAAATGT+AGG | - | chr8.4:17955225-17955244 | None:intergenic | 25.0% |
| ! | TATCAGTAATATGAGAATTG+AGG | - | chr8.4:17956595-17956614 | None:intergenic | 25.0% |
| ! | TATGTAATTACTGATGTTCT+TGG | + | chr8.4:17957408-17957427 | MS.gene063505:intron | 25.0% |
| ! | TCAGATTGTAAACAAATGAA+CGG | - | chr8.4:17954571-17954590 | None:intergenic | 25.0% |
| ! | TCTCTTGAAAATTGTTTGTT+TGG | + | chr8.4:17956082-17956101 | MS.gene063505:intron | 25.0% |
| ! | TCTGCTGTGTAATAAAATTA+TGG | + | chr8.4:17958026-17958045 | MS.gene063505:intron | 25.0% |
| ! | TGCAGAGAAAAACAAATAAA+TGG | - | chr8.4:17956758-17956777 | None:intergenic | 25.0% |
| ! | TGGTTTATCAAATGTTTCTT+AGG | + | chr8.4:17955260-17955279 | MS.gene063505:intron | 25.0% |
| ! | TTAAAGGTTAATGAAGCTAA+TGG | - | chr8.4:17956795-17956814 | None:intergenic | 25.0% |
| ! | TTCTATCCTCGATAAAAATA+AGG | - | chr8.4:17955372-17955391 | None:intergenic | 25.0% |
| ! | TTTAAATTATGTTTCCTCTG+TGG | + | chr8.4:17957572-17957591 | MS.gene063505:intron | 25.0% |
| ! | TTTCAAATTTGGTAAAATCC+AGG | - | chr8.4:17954695-17954714 | None:intergenic | 25.0% |
| ! | TTTGAATAGAAGAATCTTCA+AGG | - | chr8.4:17957508-17957527 | None:intergenic | 25.0% |
| !! | ATTTAGTTTAGGGTTTATGA+GGG | + | chr8.4:17954632-17954651 | MS.gene063505:intron | 25.0% |
| !! | ATTTTATTACACAGCAGAAA+AGG | - | chr8.4:17958024-17958043 | None:intergenic | 25.0% |
| !!! | ATATAATTTGTCCTTTTTGC+AGG | + | chr8.4:17955021-17955040 | MS.gene063505:intron | 25.0% |
| !!! | ATTGTTGGTTTTCAAATTGT+AGG | + | chr8.4:17958575-17958594 | MS.gene063505:intron | 25.0% |
| !!! | CATTTATTTGCCTTACTTTT+TGG | + | chr8.4:17956659-17956678 | MS.gene063505:intron | 25.0% |
| !!! | TTAATGCTTTGTTTTTGAGA+AGG | - | chr8.4:17958533-17958552 | None:intergenic | 25.0% |
| !!! | TTGTTAGTCTTCTTATAGTT+AGG | + | chr8.4:17957686-17957705 | MS.gene063505:intron | 25.0% |
| !!! | TTGTTGGTTTTCAAATTGTA+GGG | + | chr8.4:17958576-17958595 | MS.gene063505:intron | 25.0% |
| AAAAAAAACAGCTACTTACC+AGG | + | chr8.4:17958469-17958488 | MS.gene063505:intron | 30.0% | |
| AAAAAAACAGCTACTTACCA+GGG | + | chr8.4:17958470-17958489 | MS.gene063505:intron | 30.0% | |
| AAAAATTCTGGGTGAAACAA+AGG | + | chr8.4:17957010-17957029 | MS.gene063505:intron | 30.0% | |
| AAACTCAAATTCCACATGTA+AGG | - | chr8.4:17956491-17956510 | None:intergenic | 30.0% | |
| AAATCATCTGACAAATGAAG+CGG | - | chr8.4:17956136-17956155 | None:intergenic | 30.0% | |
| AAATCTAACACCTAGTAACA+AGG | - | chr8.4:17956455-17956474 | None:intergenic | 30.0% | |
| AACCTTTAACTCTTTCCAAT+TGG | + | chr8.4:17956806-17956825 | MS.gene063505:intron | 30.0% | |
| AACTCAAATTCCACATGTAA+GGG | - | chr8.4:17956490-17956509 | None:intergenic | 30.0% | |
| AAGCTAATGGTACAAATAAC+TGG | - | chr8.4:17956782-17956801 | None:intergenic | 30.0% | |
| AATAATAATTCGTATCGGAG+TGG | + | chr8.4:17954516-17954535 | MS.gene063505:intron | 30.0% | |
| ACAAGAATACAAGATTGACA+GGG | - | chr8.4:17958113-17958132 | None:intergenic | 30.0% | |
| ACATGAACTTTCCAATGATT+AGG | + | chr8.4:17957830-17957849 | MS.gene063505:intron | 30.0% | |
| ACCTTTAACTCTTTCCAATT+GGG | + | chr8.4:17956807-17956826 | MS.gene063505:intron | 30.0% | |
| ACTAAAATATTAGGATGCTC+TGG | - | chr8.4:17955438-17955457 | None:intergenic | 30.0% | |
| ATATTGACATTTCTGCGATT+TGG | - | chr8.4:17957666-17957685 | None:intergenic | 30.0% | |
| ATCCATATATCAAAGGTTTG+AGG | - | chr8.4:17957110-17957129 | None:intergenic | 30.0% | |
| CAGATTGTAAACAAATGAAC+GGG | - | chr8.4:17954570-17954589 | None:intergenic | 30.0% | |
| CATGAACTTTCCAATGATTA+GGG | + | chr8.4:17957831-17957850 | MS.gene063505:intron | 30.0% | |
| GACAGAACTACATTTCAAAT+TGG | + | chr8.4:17954493-17954512 | MS.gene063505:intron | 30.0% | |
| GATAAACCAAAATAACAGGT+GGG | - | chr8.4:17955249-17955268 | None:intergenic | 30.0% | |
| GATCAGATTGCAAGTAAATT+TGG | + | chr8.4:17956834-17956853 | MS.gene063505:intron | 30.0% | |
| GGTAATCTAGATAGATTATC+AGG | + | chr8.4:17956017-17956036 | MS.gene063505:intron | 30.0% | |
| GTGCTGCAAAAGAAAAATAA+TGG | - | chr8.4:17958507-17958526 | None:intergenic | 30.0% | |
| TAAAATTATGGCGAATGAAG+GGG | + | chr8.4:17958038-17958057 | MS.gene063505:intron | 30.0% | |
| TACAAGAATACAAGATTGAC+AGG | - | chr8.4:17958114-17958133 | None:intergenic | 30.0% | |
| TCAAATTGATGCAATCTAGT+AGG | + | chr8.4:17958282-17958301 | MS.gene063505:intron | 30.0% | |
| TCAGTAATATGAGAATTGAG+GGG | - | chr8.4:17956593-17956612 | None:intergenic | 30.0% | |
| TCGAGAAATCCATATATCAA+AGG | - | chr8.4:17957117-17957136 | None:intergenic | 30.0% | |
| TCTTTGGACAATATTAAGAG+TGG | + | chr8.4:17955665-17955684 | MS.gene063505:CDS | 30.0% | |
| TGATAAACCAAAATAACAGG+TGG | - | chr8.4:17955250-17955269 | None:intergenic | 30.0% | |
| TGTTACTAGGTGTTAGATTT+AGG | + | chr8.4:17956455-17956474 | MS.gene063505:intron | 30.0% | |
| TTCAAGTATATAGTTGCTCT+TGG | - | chr8.4:17957906-17957925 | None:intergenic | 30.0% | |
| TTCTTCGAAAGATCATTGAT+TGG | - | chr8.4:17954413-17954432 | None:intergenic | 30.0% | |
| ! | GATTTAGTTTAGGGTTTATG+AGG | + | chr8.4:17954631-17954650 | MS.gene063505:intron | 30.0% |
| ! | TAGGCTTTTACGTGTTATAT+GGG | + | chr8.4:17954989-17955008 | MS.gene063505:intron | 30.0% |
| ! | TCTTCGAAAGATCATTGATT+GGG | - | chr8.4:17954412-17954431 | None:intergenic | 30.0% |
| ! | TGCCTCATAAATTCCATTTT+AGG | + | chr8.4:17957548-17957567 | MS.gene063505:intron | 30.0% |
| ! | TTAGGCTTTTACGTGTTATA+TGG | + | chr8.4:17954988-17955007 | MS.gene063505:intron | 30.0% |
| ! | TTCATCTGTTATTTAACACC+TGG | + | chr8.4:17954674-17954693 | MS.gene063505:intron | 30.0% |
| ! | TTGGACTGAGATTTAGTTTA+GGG | + | chr8.4:17954622-17954641 | MS.gene063505:intron | 30.0% |
| ! | TTTATGAGCAATGTGTTTTG+AGG | + | chr8.4:17957450-17957469 | MS.gene063505:intron | 30.0% |
| ! | TTTGGACTGAGATTTAGTTT+AGG | + | chr8.4:17954621-17954640 | MS.gene063505:intron | 30.0% |
| !! | TTATGAGCAATGTGTTTTGA+GGG | + | chr8.4:17957451-17957470 | MS.gene063505:intron | 30.0% |
| !!! | AAGTTTTAGAATTGGCAGAA+AGG | - | chr8.4:17956980-17956999 | None:intergenic | 30.0% |
| !!! | CTCTTACCTTATTTTTATCG+AGG | + | chr8.4:17955363-17955382 | MS.gene063505:intron | 30.0% |
| !!! | GACAATTTTTTTCTAGCATC+TGG | - | chr8.4:17957062-17957081 | None:intergenic | 30.0% |
| AAATAAGTTTCATGGCCTGT+GGG | + | chr8.4:17957608-17957627 | MS.gene063505:intron | 35.0% | |
| ACTCAAATTCCACATGTAAG+GGG | - | chr8.4:17956489-17956508 | None:intergenic | 35.0% | |
| AGATAGATTATCAGGCATTC+AGG | + | chr8.4:17956025-17956044 | MS.gene063505:intron | 35.0% | |
| AGATATGCTGAGGATAATAG+AGG | + | chr8.4:17958078-17958097 | MS.gene063505:CDS | 35.0% | |
| AGATGAAGTTAAATACGCAC+AGG | - | chr8.4:17955610-17955629 | None:intergenic | 35.0% | |
| AGCCTCAAACCTTTGATATA+TGG | + | chr8.4:17957105-17957124 | MS.gene063505:intron | 35.0% | |
| AGTAATCACATGTGTAGTGT+CGG | + | chr8.4:17954920-17954939 | MS.gene063505:intron | 35.0% | |
| AGTAGTTATGACTACGAGTT+TGG | - | chr8.4:17958205-17958224 | None:intergenic | 35.0% | |
| AGTGTCTTTCTAATCATCAC+TGG | - | chr8.4:17956956-17956975 | None:intergenic | 35.0% | |
| ATATAGTTGCTCTTGGATTG+AGG | - | chr8.4:17957899-17957918 | None:intergenic | 35.0% | |
| ATATCAGGATCTGCACATTT+GGG | + | chr8.4:17958609-17958628 | MS.gene063505:CDS | 35.0% | |
| ATCTACATGACTGAATGCAT+TGG | - | chr8.4:17955711-17955730 | None:intergenic | 35.0% | |
| CATTTAATGTCCAACATGCT+TGG | + | chr8.4:17955737-17955756 | MS.gene063505:CDS | 35.0% | |
| CTACAAGTCTCTAACATCAA+AGG | + | chr8.4:17956929-17956948 | MS.gene063505:CDS | 35.0% | |
| CTTTGATGTTAGAGACTTGT+AGG | - | chr8.4:17956931-17956950 | None:intergenic | 35.0% | |
| TAAATAAGTTTCATGGCCTG+TGG | + | chr8.4:17957607-17957626 | MS.gene063505:intron | 35.0% | |
| TAATATGAGAATTGAGGGGA+TGG | - | chr8.4:17956589-17956608 | None:intergenic | 35.0% | |
| TAGAAAGATGGTGAAACAGA+CGG | + | chr8.4:17958376-17958395 | MS.gene063505:intron | 35.0% | |
| TATAGCTTCAGCAGAAATTC+AGG | - | chr8.4:17956861-17956880 | None:intergenic | 35.0% | |
| TCTGTTTCACCATCTTTCTA+CGG | - | chr8.4:17958376-17958395 | None:intergenic | 35.0% | |
| TGTCGATGAAAATGAACTCT+GGG | - | chr8.4:17954477-17954496 | None:intergenic | 35.0% | |
| TTCTTGGTATCCTTGTTACT+AGG | + | chr8.4:17956442-17956461 | MS.gene063505:intron | 35.0% | |
| TTTCTGTTCACAGATCTCTT+TGG | + | chr8.4:17955649-17955668 | MS.gene063505:intron | 35.0% | |
| ! | AATTTTCTGGGTCATATGAC+TGG | + | chr8.4:17956337-17956356 | MS.gene063505:intron | 35.0% |
| ! | ATGAAGGGGATCTTTTTGAT+CGG | + | chr8.4:17958052-17958071 | MS.gene063505:intron | 35.0% |
| ! | ATTTTCTGGGTCATATGACT+GGG | + | chr8.4:17956338-17956357 | MS.gene063505:intron | 35.0% |
| ! | TCAGTTTTTGACCTATCAGA+AGG | - | chr8.4:17957975-17957994 | None:intergenic | 35.0% |
| ! | TGAGGATAATAGAGGTATGA+TGG | + | chr8.4:17958086-17958105 | MS.gene063505:intron | 35.0% |
| !! | GTGGTTCTGTTTTCTATCTT+GGG | + | chr8.4:17956898-17956917 | MS.gene063505:CDS | 35.0% |
| !! | TAATGGTTTTCGTTTTTCCC+TGG | - | chr8.4:17958490-17958509 | None:intergenic | 35.0% |
| !!! | TTTTTTCTAGCATCTGGTGA+AGG | - | chr8.4:17957056-17957075 | None:intergenic | 35.0% |
| AACGGGTATAGAGAATGTGA+CGG | - | chr8.4:17954553-17954572 | None:intergenic | 40.0% | |
| AATAGTTGATTGACACCCAC+AGG | - | chr8.4:17957626-17957645 | None:intergenic | 40.0% | |
| ACCGTGTGTACCAAAAAGTA+AGG | - | chr8.4:17956672-17956691 | None:intergenic | 40.0% | |
| ACTTCTTTGGATTGAGTGTG+CGG | + | chr8.4:17955765-17955784 | MS.gene063505:intron | 40.0% | |
| ATAATTCGTATCGGAGTGGT+TGG | + | chr8.4:17954520-17954539 | MS.gene063505:intron | 40.0% | |
| ATGCTTGGACTCTACTTCTT+TGG | + | chr8.4:17955752-17955771 | MS.gene063505:CDS | 40.0% | |
| ATTAGGATGCTCTGGCTATT+TGG | - | chr8.4:17955430-17955449 | None:intergenic | 40.0% | |
| CAATCTGATCAAAGCCCAAT+TGG | - | chr8.4:17956824-17956843 | None:intergenic | 40.0% | |
| CAATTTCATCCTTCAACAGC+TGG | - | chr8.4:17955561-17955580 | None:intergenic | 40.0% | |
| CACCTAAACCTTCTGATTGA+AGG | - | chr8.4:17954958-17954977 | None:intergenic | 40.0% | |
| CATGTTGGACATTAAATGCC+AGG | - | chr8.4:17955735-17955754 | None:intergenic | 40.0% | |
| CTCAAATTCCACATGTAAGG+GGG | - | chr8.4:17956488-17956507 | None:intergenic | 40.0% | |
| CTGTCGATGAAAATGAACTC+TGG | - | chr8.4:17954478-17954497 | None:intergenic | 40.0% | |
| CTGTTTCACCATCTTTCTAC+GGG | - | chr8.4:17958375-17958394 | None:intergenic | 40.0% | |
| GACAACTAAGCTACTTGAGA+TGG | - | chr8.4:17958170-17958189 | None:intergenic | 40.0% | |
| GATATCAGGATCTGCACATT+TGG | + | chr8.4:17958608-17958627 | MS.gene063505:CDS | 40.0% | |
| GCCCAATTGGAAAGAGTTAA+AGG | - | chr8.4:17956811-17956830 | None:intergenic | 40.0% | |
| GCTGTTATCTACCTTCTGAT+AGG | + | chr8.4:17957961-17957980 | MS.gene063505:intron | 40.0% | |
| GGCTTCAAAGGATTTAGCAT+TGG | + | chr8.4:17957326-17957345 | MS.gene063505:CDS | 40.0% | |
| TACACAATTGTGTTCCACAG+AGG | - | chr8.4:17957589-17957608 | None:intergenic | 40.0% | |
| TACACTAATCTACACGCTTC+AGG | - | chr8.4:17955497-17955516 | None:intergenic | 40.0% | |
| TGATCGGAAAAGATATGCTG+AGG | + | chr8.4:17958068-17958087 | MS.gene063505:CDS | 40.0% | |
| ! | ATGAAGCACCAACACAGATA+CGG | + | chr8.4:17954827-17954846 | MS.gene063505:intron | 40.0% |
| ! | GAAAGAGGAACGAATTTTGG+TGG | - | chr8.4:17954388-17954407 | None:intergenic | 40.0% |
| ! | GATCATTGATTGGGAGAAAG+AGG | - | chr8.4:17954403-17954422 | None:intergenic | 40.0% |
| ! | GCATTCAGGCTTGTTTGTTT+AGG | + | chr8.4:17956039-17956058 | MS.gene063505:intron | 40.0% |
| ! | GCTACGATCAATGATGCTTT+TGG | - | chr8.4:17954451-17954470 | None:intergenic | 40.0% |
| ! | GGAGAAAGAGGAACGAATTT+TGG | - | chr8.4:17954391-17954410 | None:intergenic | 40.0% |
| ! | TATCTGTGTTGGTGCTTCAT+AGG | - | chr8.4:17954827-17954846 | None:intergenic | 40.0% |
| ! | TCTGCATCTTGTTTGCAACA+GGG | + | chr8.4:17957288-17957307 | MS.gene063505:intron | 40.0% |
| ! | TTCAGGCTTGTTTGTTTAGG+TGG | + | chr8.4:17956042-17956061 | MS.gene063505:intron | 40.0% |
| ! | TTTAGGTGCTACAGAGGTTT+AGG | + | chr8.4:17954970-17954989 | MS.gene063505:intron | 40.0% |
| !! | ACGCAGCAAGCTTTTAGTTA+TGG | + | chr8.4:17956198-17956217 | MS.gene063505:intron | 40.0% |
| !! | AGGAACGAATTTTGGTGGAA+AGG | - | chr8.4:17954383-17954402 | None:intergenic | 40.0% |
| !! | GGAACGAATTTTGGTGGAAA+GGG | - | chr8.4:17954382-17954401 | None:intergenic | 40.0% |
| !! | GGTGGTTCTGTTTTCTATCT+TGG | + | chr8.4:17956897-17956916 | MS.gene063505:CDS | 40.0% |
| !! | GTAACACCCACCTGTTATTT+TGG | + | chr8.4:17955240-17955259 | MS.gene063505:intron | 40.0% |
| !! | TGAAACAGACGGCTTTGTTT+AGG | + | chr8.4:17958387-17958406 | MS.gene063505:intron | 40.0% |
| !!! | GCCTTACTTTTTGGTACACA+CGG | + | chr8.4:17956668-17956687 | MS.gene063505:intron | 40.0% |
| AATGACACTGTGAGACGTTC+CGG | + | chr8.4:17955460-17955479 | MS.gene063505:intron | 45.0% | |
| ACACGCTTCAGGCATGAATT+AGG | - | chr8.4:17955486-17955505 | None:intergenic | 45.0% | |
| AGCCACAATCTCCTGCAAAA+AGG | - | chr8.4:17955035-17955054 | None:intergenic | 45.0% | |
| AGTAGCTTAGTTGTCCGAGA+AGG | + | chr8.4:17958175-17958194 | MS.gene063505:intron | 45.0% | |
| ATTACCAGCTTCCGTTCTTC+AGG | + | chr8.4:17957370-17957389 | MS.gene063505:intron | 45.0% | |
| CATTCAGTCATGTAGATGCC+TGG | + | chr8.4:17955714-17955733 | MS.gene063505:CDS | 45.0% | |
| CCATAGCATGGTCAAGAGTT+CGG | + | chr8.4:17958649-17958668 | MS.gene063505:CDS | 45.0% | |
| CGCCTTCAATCAGAAGGTTT+AGG | + | chr8.4:17954953-17954972 | MS.gene063505:intron | 45.0% | |
| CTATATCTTGCTGGCGCAAT+TGG | + | chr8.4:17956876-17956895 | MS.gene063505:CDS | 45.0% | |
| CTGCTGAAGCTATATCTTGC+TGG | + | chr8.4:17956867-17956886 | MS.gene063505:CDS | 45.0% | |
| GAAGAAAACCCCCTTACATG+TGG | + | chr8.4:17956477-17956496 | MS.gene063505:intron | 45.0% | |
| GAAGTAGAGTCCAAGCATGT+TGG | - | chr8.4:17955750-17955769 | None:intergenic | 45.0% | |
| TCCAATGATTAGGGAGCAAG+TGG | + | chr8.4:17957840-17957859 | MS.gene063505:intron | 45.0% | |
| TCCACTTGCTCCCTAATCAT+TGG | - | chr8.4:17957844-17957863 | None:intergenic | 45.0% | |
| TGACACTCACATGTTGACAC+CGG | + | chr8.4:17954853-17954872 | MS.gene063505:intron | 45.0% | |
| TGCACTTTACCAGCTGTTGA+AGG | + | chr8.4:17955549-17955568 | MS.gene063505:intron | 45.0% | |
| TGTCAAGTCCGTATCTGTGT+TGG | - | chr8.4:17954838-17954857 | None:intergenic | 45.0% | |
| TTACCAGCTTCCGTTCTTCA+GGG | + | chr8.4:17957371-17957390 | MS.gene063505:intron | 45.0% | |
| ! | ACGAGTTTGGTGATCCTTCT+CGG | - | chr8.4:17958192-17958211 | None:intergenic | 45.0% |
| ! | AGAAGGTTTAGGTGCTACAG+AGG | + | chr8.4:17954964-17954983 | MS.gene063505:intron | 45.0% |
| ! | CTCTGCATCTTGTTTGCAAC+AGG | + | chr8.4:17957287-17957306 | MS.gene063505:intron | 45.0% |
| ! | GTCCTTTTTGCAGGAGATTG+TGG | + | chr8.4:17955030-17955049 | MS.gene063505:intron | 45.0% |
| ! | TCTTGTTTGCAACAGGGCTA+TGG | + | chr8.4:17957294-17957313 | MS.gene063505:intron | 45.0% |
| !! | AAAGCTTGCTGCGTGATTAC+TGG | - | chr8.4:17956192-17956211 | None:intergenic | 45.0% |
| !!! | GAGCAATGTGTTTTGAGGGA+AGG | + | chr8.4:17957455-17957474 | MS.gene063505:intron | 45.0% |
| ACACCAGATGACGTGGTTCT+GGG | + | chr8.4:17955065-17955084 | MS.gene063505:CDS | 50.0% | |
| AGAATTGAGGGGATGGCTAG+TGG | - | chr8.4:17956582-17956601 | None:intergenic | 50.0% | |
| CCGAACTCTTGACCATGCTA+TGG | - | chr8.4:17958652-17958671 | None:intergenic | 50.0% | |
| GCAGGAGATTGTGGCTAAAC+AGG | + | chr8.4:17955039-17955058 | MS.gene063505:intron | 50.0% | |
| GCATGGTCAAGAGTTCGGAA+AGG | + | chr8.4:17958654-17958673 | MS.gene063505:CDS | 50.0% | |
| GCTTCAGGCATGAATTAGGC+CGG | - | chr8.4:17955482-17955501 | None:intergenic | 50.0% | |
| GTCCTACACTCCCTGAAGAA+CGG | - | chr8.4:17957384-17957403 | None:intergenic | 50.0% | |
| TAGGGAGACAGTGCGATATC+AGG | + | chr8.4:17958594-17958613 | MS.gene063505:intron | 50.0% | |
| TATCTTGCTGGCGCAATTGG+TGG | + | chr8.4:17956879-17956898 | MS.gene063505:CDS | 50.0% | |
| TCAGGATCTGCACATTTGGG+TGG | + | chr8.4:17958612-17958631 | MS.gene063505:CDS | 50.0% | |
| TGGAGCGATCAAGGCTTCAA+AGG | + | chr8.4:17957314-17957333 | MS.gene063505:CDS | 50.0% | |
| TTGCAGTTGCAGCCATAGCA+TGG | + | chr8.4:17958637-17958656 | MS.gene063505:CDS | 50.0% | |
| ! | ACATGTGTAGTGTCGGACAC+CGG | + | chr8.4:17954927-17954946 | MS.gene063505:intron | 50.0% |
| ! | CTGCGATTTGGCGAACTTGA+TGG | - | chr8.4:17957654-17957673 | None:intergenic | 50.0% |
| ! | CTTCTGATTGAAGGCGTGTC+CGG | - | chr8.4:17954949-17954968 | None:intergenic | 50.0% |
| ! | TTCCGTTCTTCAGGGAGTGT+AGG | + | chr8.4:17957379-17957398 | MS.gene063505:intron | 50.0% |
| AACCCCAGAACCACGTCATC+TGG | - | chr8.4:17955071-17955090 | None:intergenic | 55.0% | |
| ACAGGGCTATGGAGCGATCA+AGG | + | chr8.4:17957305-17957324 | MS.gene063505:intron | 55.0% | |
| ACTCCCTGAAGAACGGAAGC+TGG | - | chr8.4:17957377-17957396 | None:intergenic | 55.0% | |
| CGGACACGCCTTCAATCAGA+AGG | + | chr8.4:17954947-17954966 | MS.gene063505:intron | 55.0% | |
| GACACCAGATGACGTGGTTC+TGG | + | chr8.4:17955064-17955083 | MS.gene063505:CDS | 55.0% | |
| ! | CACCAGATGACGTGGTTCTG+GGG | + | chr8.4:17955066-17955085 | MS.gene063505:CDS | 55.0% |
| ACCAGCAACGCTGCAGGAAC+TGG | - | chr8.4:17957939-17957958 | None:intergenic | 60.0% | |
| ACCAGTTCCTGCAGCGTTGC+TGG | + | chr8.4:17957935-17957954 | MS.gene063505:CDS | 60.0% | |
| CAGCTTACCAGCAACGCTGC+AGG | - | chr8.4:17957945-17957964 | None:intergenic | 60.0% | |
| CAGGCTGACACCAGATGACG+TGG | + | chr8.4:17955058-17955077 | MS.gene063505:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 17954371 | 17958686 | 17954371 | ID=MS.gene063505 |
| chr8.4 | mRNA | 17954371 | 17958686 | 17954371 | ID=MS.gene063505.t1;Parent=MS.gene063505 |
| chr8.4 | exon | 17954371 | 17954444 | 17954371 | ID=MS.gene063505.t1.exon1;Parent=MS.gene063505.t1 |
| chr8.4 | CDS | 17954371 | 17954444 | 17954371 | ID=cds.MS.gene063505.t1;Parent=MS.gene063505.t1 |
| chr8.4 | exon | 17955043 | 17955163 | 17955043 | ID=MS.gene063505.t1.exon2;Parent=MS.gene063505.t1 |
| chr8.4 | CDS | 17955043 | 17955163 | 17955043 | ID=cds.MS.gene063505.t1;Parent=MS.gene063505.t1 |
| chr8.4 | exon | 17955662 | 17955781 | 17955662 | ID=MS.gene063505.t1.exon3;Parent=MS.gene063505.t1 |
| chr8.4 | CDS | 17955662 | 17955781 | 17955662 | ID=cds.MS.gene063505.t1;Parent=MS.gene063505.t1 |
| chr8.4 | exon | 17956840 | 17956950 | 17956840 | ID=MS.gene063505.t1.exon4;Parent=MS.gene063505.t1 |
| chr8.4 | CDS | 17956840 | 17956950 | 17956840 | ID=cds.MS.gene063505.t1;Parent=MS.gene063505.t1 |
| chr8.4 | exon | 17957309 | 17957347 | 17957309 | ID=MS.gene063505.t1.exon5;Parent=MS.gene063505.t1 |
| chr8.4 | CDS | 17957309 | 17957347 | 17957309 | ID=cds.MS.gene063505.t1;Parent=MS.gene063505.t1 |
| chr8.4 | exon | 17957852 | 17957956 | 17957852 | ID=MS.gene063505.t1.exon6;Parent=MS.gene063505.t1 |
| chr8.4 | CDS | 17957852 | 17957956 | 17957852 | ID=cds.MS.gene063505.t1;Parent=MS.gene063505.t1 |
| chr8.4 | exon | 17958058 | 17958099 | 17958058 | ID=MS.gene063505.t1.exon7;Parent=MS.gene063505.t1 |
| chr8.4 | CDS | 17958058 | 17958099 | 17958058 | ID=cds.MS.gene063505.t1;Parent=MS.gene063505.t1 |
| chr8.4 | exon | 17958597 | 17958686 | 17958597 | ID=MS.gene063505.t1.exon8;Parent=MS.gene063505.t1 |
| chr8.4 | CDS | 17958597 | 17958686 | 17958597 | ID=cds.MS.gene063505.t1;Parent=MS.gene063505.t1 |
| Gene Sequence |
| Protein sequence |
