AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene06362

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene06362.t1 MTR_3g096930 97.539 447 9 1 1 447 1 445 0.0 892
MS.gene06362.t1 MTR_8g094590 72.390 431 101 4 18 447 22 435 0.0 650
MS.gene06362.t1 MTR_8g094590 71.392 395 95 4 18 411 22 399 0.0 588
MS.gene06362.t1 MTR_8g094590 69.935 306 74 4 18 322 22 310 1.42e-155 443
MS.gene06362.t1 MTR_1g029810 55.556 378 162 5 68 441 39 414 5.07e-143 415
MS.gene06362.t1 MTR_1g029810 55.438 377 162 5 68 440 39 413 2.08e-141 412
MS.gene06362.t1 MTR_4g023650 48.303 383 184 8 71 442 46 425 2.47e-120 357
MS.gene06362.t1 MTR_4g023630 48.294 381 183 9 71 440 46 423 9.38e-116 346
MS.gene06362.t1 MTR_6g084710 44.855 379 192 11 71 436 176 550 1.07e-95 299
MS.gene06362.t1 MTR_6g084710 44.545 330 166 11 71 387 176 501 1.84e-79 255
MS.gene06362.t1 MTR_3g006820 37.250 400 222 15 55 440 32 416 1.48e-74 239
MS.gene06362.t1 MTR_1g061940 25.783 415 256 13 66 444 59 457 1.87e-34 134
MS.gene06362.t1 MTR_1g078240 26.984 441 267 17 40 446 20 439 1.93e-33 131
MS.gene06362.t1 MTR_1g078240 26.923 442 267 18 40 446 20 440 1.30e-32 129
MS.gene06362.t1 MTR_7g080230 26.585 410 250 17 66 444 49 438 8.32e-32 127
MS.gene06362.t1 MTR_7g102750 26.214 412 238 17 75 444 68 455 5.96e-31 124
MS.gene06362.t1 MTR_4g095270 27.540 374 236 14 77 436 71 423 1.69e-29 121
MS.gene06362.t1 MTR_2g084550 26.866 402 248 16 66 437 53 438 1.72e-29 120
MS.gene06362.t1 MTR_4g095270 27.228 404 252 16 52 436 43 423 2.80e-29 121
MS.gene06362.t1 MTR_7g021510 27.419 434 256 19 47 444 31 441 7.33e-29 118
MS.gene06362.t1 MTR_4g056420 25.063 395 247 16 73 437 62 437 7.91e-29 118
MS.gene06362.t1 MTR_5g016260 26.431 367 239 13 85 439 87 434 3.40e-27 114
MS.gene06362.t1 MTR_5g016260 26.431 367 239 13 85 439 87 434 7.16e-27 114
MS.gene06362.t1 MTR_5g061690 27.568 370 218 15 91 436 106 449 6.08e-26 110
MS.gene06362.t1 MTR_8g038280 25.000 400 247 14 65 439 65 436 9.11e-26 109
MS.gene06362.t1 MTR_5g080890 25.500 400 243 16 65 439 65 434 1.71e-25 108
MS.gene06362.t1 MTR_5g022880 27.174 368 223 12 91 436 117 461 4.36e-25 108
MS.gene06362.t1 MTR_8g096990 25.000 396 248 14 65 439 65 432 5.23e-25 107
MS.gene06362.t1 MTR_5g080960 25.500 400 243 16 65 439 65 434 9.90e-25 106
MS.gene06362.t1 MTR_8g075090 29.288 379 217 19 91 443 117 470 1.21e-24 106
MS.gene06362.t1 MTR_8g075090 29.380 371 215 18 91 439 117 462 1.32e-24 106
MS.gene06362.t1 MTR_1g078240 27.778 306 191 11 40 318 20 322 1.57e-24 104
MS.gene06362.t1 MTR_5g044770 25.661 378 227 17 85 439 85 431 8.72e-24 103
MS.gene06362.t1 MTR_0036s0110 25.445 393 243 16 66 438 80 442 1.01e-23 103
MS.gene06362.t1 MTR_3g097150 25.564 399 228 22 71 439 90 449 4.59e-23 101
MS.gene06362.t1 MTR_7g102750 25.000 356 215 14 75 402 68 399 2.23e-22 99.4
MS.gene06362.t1 MTR_3g087780 25.831 391 223 15 91 447 104 461 5.10e-22 99.0
MS.gene06362.t1 MTR_5g008110 26.735 389 220 17 80 438 62 415 7.55e-22 97.4
MS.gene06362.t1 MTR_2g067830 25.260 384 242 15 76 438 47 406 1.38e-21 96.7
MS.gene06362.t1 MTR_7g080230 26.176 340 208 14 129 444 48 368 5.51e-21 95.1
MS.gene06362.t1 MTR_0036s0050 24.485 388 246 15 68 438 78 435 8.32e-21 94.7
MS.gene06362.t1 MTR_5g061690 27.419 310 191 12 137 436 25 310 3.05e-20 92.4
MS.gene06362.t1 MTR_2g070430 27.363 402 210 22 87 438 88 457 2.72e-19 90.5
MS.gene06362.t1 MTR_8g075010 26.455 378 228 16 84 436 97 449 2.97e-19 90.5
MS.gene06362.t1 MTR_8g075090 29.446 343 195 18 91 411 117 434 3.68e-19 90.1
MS.gene06362.t1 MTR_2g105300 24.737 380 241 15 77 435 26 381 1.29e-18 87.8
MS.gene06362.t1 MTR_3g070980 28.862 246 117 7 84 325 15 206 1.59e-18 84.3
MS.gene06362.t1 MTR_7g117430 28.117 377 216 19 85 437 140 485 1.83e-18 87.8
MS.gene06362.t1 MTR_0036s0070 23.117 385 248 15 68 439 78 427 1.69e-17 84.7
MS.gene06362.t1 MTR_4g007740 26.005 373 231 19 88 439 132 480 1.02e-16 82.8
MS.gene06362.t1 MTR_8g038250 23.785 391 223 15 72 439 78 416 2.24e-16 81.3
MS.gene06362.t1 MTR_3g087780 25.439 342 200 13 130 447 45 355 2.43e-16 81.3
MS.gene06362.t1 MTR_3g087780 25.740 338 204 12 130 447 9 319 2.61e-16 80.9
MS.gene06362.t1 MTR_5g091130 26.018 442 262 16 34 439 144 556 4.19e-16 80.9
MS.gene06362.t1 MTR_5g077850 23.136 389 233 12 89 441 84 442 1.93e-15 78.6
MS.gene06362.t1 MTR_8g103880 30.357 168 98 6 89 252 119 271 4.45e-15 77.4
MS.gene06362.t1 MTR_5g008070 25.000 376 227 18 85 436 80 424 4.84e-15 77.0
MS.gene06362.t1 MTR_1g115210 31.757 148 85 6 85 228 145 280 1.59e-14 75.9
MS.gene06362.t1 MTR_5g044570 25.405 370 210 20 87 438 90 411 2.02e-14 75.1
MS.gene06362.t1 MTR_8g038310 26.523 279 157 13 85 343 86 336 4.54e-14 73.9
MS.gene06362.t1 MTR_6g085010 24.242 363 226 16 91 436 161 491 4.84e-14 74.3
MS.gene06362.t1 MTR_2g028190 23.936 376 239 15 85 437 101 452 5.51e-14 73.9
MS.gene06362.t1 MTR_0024s0040 25.581 301 183 14 86 360 63 348 8.45e-14 73.2
MS.gene06362.t1 MTR_3g053980 24.267 375 245 14 79 437 135 486 1.48e-13 72.8
MS.gene06362.t1 MTR_3g046300 23.620 453 266 20 31 439 45 461 3.60e-13 71.6
MS.gene06362.t1 MTR_3g053710 25.130 386 236 20 77 436 108 466 6.15e-12 67.8
MS.gene06362.t1 MTR_5g077920 23.316 386 238 12 89 441 71 431 2.54e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene06362.t1 AT4G33490 65.464 388 131 3 63 447 35 422 0.0 540
MS.gene06362.t1 AT4G33490 67.614 352 111 3 63 411 32 383 7.38e-177 501
MS.gene06362.t1 AT1G44130 51.989 377 176 5 69 442 31 405 1.05e-143 416
MS.gene06362.t1 AT1G77480 47.118 399 206 5 49 443 29 426 2.33e-131 386
MS.gene06362.t1 AT1G77480 46.970 396 205 5 49 440 29 423 1.27e-129 383
MS.gene06362.t1 AT1G49050 44.836 397 194 14 71 447 187 578 3.67e-94 295
MS.gene06362.t1 AT1G49050 43.570 381 192 13 86 447 29 405 7.23e-88 274
MS.gene06362.t1 AT1G49050 43.911 271 134 9 71 325 187 455 9.33e-59 200
MS.gene06362.t1 AT1G65240 28.960 404 238 14 68 444 53 434 3.51e-38 144
MS.gene06362.t1 AT2G36670 26.521 411 243 15 70 447 81 465 6.18e-34 133
MS.gene06362.t1 AT5G22850 26.316 399 244 15 70 437 62 441 9.69e-34 132
MS.gene06362.t1 AT3G02740 29.250 400 238 16 71 444 67 447 8.40e-33 130
MS.gene06362.t1 AT5G43100 28.841 371 224 15 85 439 74 420 1.61e-32 129
MS.gene06362.t1 AT5G36260 27.273 385 238 12 84 444 75 441 2.67e-32 128
MS.gene06362.t1 AT2G36670 26.202 416 243 16 70 447 81 470 9.43e-32 127
MS.gene06362.t1 AT5G43100 28.841 371 224 15 85 439 74 420 1.02e-31 128
MS.gene06362.t1 AT3G02740 29.124 388 232 15 81 444 4 372 1.96e-31 125
MS.gene06362.t1 AT2G36670 25.700 393 235 14 86 447 33 399 1.60e-30 122
MS.gene06362.t1 AT2G36670 25.700 393 235 14 86 447 33 399 1.60e-30 122
MS.gene06362.t1 AT1G05840 26.904 394 229 13 85 444 78 446 2.42e-30 123
MS.gene06362.t1 AT1G08210 26.931 479 280 18 7 445 9 457 9.72e-29 118
MS.gene06362.t1 AT1G08210 26.931 479 280 18 7 445 43 491 1.56e-28 118
MS.gene06362.t1 AT1G08210 26.931 479 280 18 7 445 57 505 1.82e-28 118
MS.gene06362.t1 AT3G50050 26.781 407 260 14 51 439 53 439 5.72e-28 117
MS.gene06362.t1 AT2G17760 29.973 377 219 19 81 436 97 449 2.35e-27 114
MS.gene06362.t1 AT1G08210 25.845 503 282 19 7 445 9 484 4.22e-24 105
MS.gene06362.t1 AT5G10080 26.984 378 220 14 91 438 104 455 7.84e-23 101
MS.gene06362.t1 AT3G25700 26.702 382 236 17 85 436 82 449 3.32e-22 99.0
MS.gene06362.t1 AT4G35880 26.702 382 230 15 84 442 103 457 1.25e-21 97.8
MS.gene06362.t1 AT5G10770 26.203 374 238 15 79 437 124 474 9.48e-21 94.7
MS.gene06362.t1 AT3G51330 26.415 371 242 15 84 437 98 454 1.28e-20 94.4
MS.gene06362.t1 AT3G51330 26.486 370 241 15 84 436 98 453 1.60e-20 94.4
MS.gene06362.t1 AT3G51350 27.224 371 231 15 86 436 101 452 8.53e-20 92.4
MS.gene06362.t1 AT3G51360 24.462 372 242 12 84 437 2 352 6.33e-19 89.0
MS.gene06362.t1 AT2G28010 32.000 200 113 7 58 256 39 216 6.59e-19 88.6
MS.gene06362.t1 AT3G51360 24.932 365 235 12 91 437 93 436 1.04e-18 89.0
MS.gene06362.t1 AT3G51360 24.932 365 235 12 91 437 103 446 1.12e-18 88.6
MS.gene06362.t1 AT1G66180 22.697 445 262 17 27 439 35 429 5.43e-17 83.2
MS.gene06362.t1 AT1G64830 28.333 300 177 16 85 360 84 369 3.95e-16 80.5
MS.gene06362.t1 AT4G35880 26.163 344 209 14 84 404 103 424 4.51e-16 80.5
MS.gene06362.t1 AT3G51340 26.216 370 235 14 84 436 99 447 6.85e-16 80.1
MS.gene06362.t1 AT1G01300 26.260 377 221 18 85 436 140 484 1.58e-15 79.0
MS.gene06362.t1 AT4G12920 25.490 255 172 10 87 334 58 301 1.63e-15 78.6
MS.gene06362.t1 AT3G18490 24.675 385 229 21 77 436 152 500 8.02e-15 77.0
MS.gene06362.t1 AT3G51360 28.689 244 151 8 91 319 103 338 9.57e-15 75.9
MS.gene06362.t1 AT3G51360 28.279 244 152 7 91 319 103 338 1.29e-14 75.9
MS.gene06362.t1 AT3G51360 28.689 244 151 8 91 319 103 338 1.46e-14 75.9
MS.gene06362.t1 AT3G51360 28.689 244 151 8 91 319 93 328 2.08e-14 75.1
MS.gene06362.t1 AT3G51340 25.526 380 237 15 84 436 99 459 2.31e-14 75.5
MS.gene06362.t1 AT3G51360 28.689 244 151 8 91 319 93 328 2.53e-14 75.1
MS.gene06362.t1 AT2G28040 24.645 422 249 20 34 437 12 382 2.89e-14 74.7
MS.gene06362.t1 AT5G37540 23.404 423 266 15 52 440 44 442 6.38e-14 73.9
MS.gene06362.t1 AT2G28040 24.495 396 237 20 66 439 38 393 1.10e-13 72.8
MS.gene06362.t1 AT4G30030 24.668 377 235 18 83 439 75 422 2.12e-13 72.0
MS.gene06362.t1 AT2G23945 27.046 281 171 11 86 346 95 361 7.24e-13 70.9
MS.gene06362.t1 AT5G10760 27.132 258 155 10 85 326 130 370 2.03e-12 69.3
MS.gene06362.t1 AT1G25510 23.360 381 236 16 77 436 138 483 4.33e-12 68.2
MS.gene06362.t1 AT3G20015 29.924 264 152 11 85 329 129 378 5.38e-12 68.2
MS.gene06362.t1 AT5G02190 23.980 392 218 23 96 437 82 443 1.49e-11 66.6
MS.gene06362.t1 AT2G35615 22.622 389 238 14 85 437 83 444 2.82e-11 65.9
MS.gene06362.t1 AT1G31450 24.548 387 231 16 85 437 83 442 7.00e-11 64.3
MS.gene06362.t1 AT3G25700 32.812 128 75 6 85 202 82 208 7.83e-11 63.9

Find 115 sgRNAs with CRISPR-Local

Find 232 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGCTGACATCTTTGGATTT+TGG 0.149011 3.1:-77187686 None:intergenic
TAATCAAATGCTGACATCTT+TGG 0.242452 3.1:-77187693 None:intergenic
CTTATCAAGCACTAATTTCT+TGG 0.254030 3.1:+77186821 MS.gene06362:CDS
AATCATGAAGTCAGGGAAAT+TGG 0.293581 3.1:+77184262 None:intergenic
GCTTTCGATCTTCCACTTCC+TGG 0.304667 3.1:-77187189 None:intergenic
GGCGGAGGATACATCTTCTT+TGG 0.305148 3.1:+77186546 MS.gene06362:CDS
AGAGGGAGAGTTTGGTCTTC+AGG 0.323198 3.1:-77187090 None:intergenic
AGACACCACATCCGCTTTAC+CGG 0.336790 3.1:+77185539 MS.gene06362:intron
TGGTTCATCGGTCGTGTTCC+CGG 0.337316 3.1:+77184472 MS.gene06362:CDS
GTGTCAATATCAAGAAAATA+TGG 0.341260 3.1:-77185278 None:intergenic
GACAATGAAAAGCAGTTGAT+AGG 0.341276 3.1:+77187635 MS.gene06362:CDS
CTTCAGGAGGGATTTCGAAT+TGG 0.346518 3.1:-77187212 None:intergenic
TTCTTGGAGGGAAGAGGACT+GGG 0.346941 3.1:+77186737 MS.gene06362:CDS
CGCCATTCCTACCTCCGATT+AGG 0.353194 3.1:-77187434 None:intergenic
GGAGGGAAGAGGACTGGGTT+TGG 0.363106 3.1:+77186742 MS.gene06362:CDS
ACCAACATAGAGGGAGAGTT+TGG 0.364966 3.1:-77187098 None:intergenic
TCTACTTGTTTAGCTTGGTT+TGG 0.365632 3.1:+77184317 MS.gene06362:CDS
TCGGTCGTGTTCCCGGTTCA+TGG 0.368069 3.1:+77184479 MS.gene06362:CDS
TCTTCCTACCACCCCGTAGA+TGG 0.373727 3.1:+77186426 MS.gene06362:CDS
ACTTCATATACACTTCTAAA+AGG 0.375337 3.1:-77187132 None:intergenic
TTCAGGAGGGATTTCGAATT+GGG 0.375689 3.1:-77187211 None:intergenic
GGATAAACATTTCCATGAAC+CGG 0.391556 3.1:-77184491 None:intergenic
CCTGGGAAGCTAAGTGCAAT+AGG 0.403734 3.1:-77187171 None:intergenic
GCCTTGTTCGCGTTGCTCTC+AGG 0.405030 3.1:+77185334 MS.gene06362:CDS
TTATCAAGCACTAATTTCTT+GGG 0.408330 3.1:+77186822 MS.gene06362:CDS
GATATAATCAGATATGCTTC+AGG 0.410114 3.1:-77187228 None:intergenic
ATGGAATGCTTGGCCTTGGC+AGG 0.412501 3.1:+77186445 MS.gene06362:CDS
CTCAGCAAACATTACTCAGC+AGG 0.412530 3.1:+77186700 MS.gene06362:intron
CATGGAAATGTTTATCCTGT+TGG 0.413700 3.1:+77184497 MS.gene06362:CDS
ATGGAAATGTTTATCCTGTT+GGG 0.418408 3.1:+77184498 MS.gene06362:CDS
GTTCCTCTACTTGTTTAGCT+TGG 0.418515 3.1:+77184312 MS.gene06362:CDS
CATCACATTGAAGCCATGTT+AGG 0.420882 3.1:-77185310 None:intergenic
CTTAAAGTTCGTATGGCACT+TGG 0.422527 3.1:+77185742 MS.gene06362:CDS
AATAGAGAAATCATGAAGTC+AGG 0.426807 3.1:+77184254 None:intergenic
ATTTCAAGTTCAAGTGCAAA+TGG 0.428003 3.1:+77184368 MS.gene06362:CDS
CTTTCGATCTTCCACTTCCT+GGG 0.434979 3.1:-77187188 None:intergenic
TATGTTCTCAACTTTACAAA+TGG 0.435278 3.1:+77185712 MS.gene06362:CDS
ACGGGGTGGTAGGAAGAATC+TGG 0.438753 3.1:-77186420 None:intergenic
TGTTTATGATTCTTCTCGAT+TGG 0.447111 3.1:+77186572 MS.gene06362:CDS
GTTCTTGGAGGGAAGAGGAC+TGG 0.447212 3.1:+77186736 MS.gene06362:CDS
GATATCACAGCTGAATGGTC+AGG 0.452709 3.1:+77186482 MS.gene06362:CDS
ATGATTCTTCTCGATTGGCT+TGG 0.455289 3.1:+77186577 MS.gene06362:CDS
CCTATTGCACTTAGCTTCCC+AGG 0.459180 3.1:+77187171 MS.gene06362:CDS
ATAATGTGACTATCAACATT+GGG 0.460427 3.1:+77185243 MS.gene06362:CDS
AACATGGGAAATGTTTGCTT+GGG 0.462552 3.1:+77187372 MS.gene06362:CDS
ATATCAAGAAAATATGGCCT+TGG 0.468926 3.1:-77185272 None:intergenic
GCACTTAGCTTCCCAGGAAG+TGG 0.475231 3.1:+77187177 MS.gene06362:CDS
GCACAGAGGGGATGCCTGCA+TGG 0.478162 3.1:-77185580 None:intergenic
GTAGATGGAATGCTTGGCCT+TGG 0.479671 3.1:+77186441 MS.gene06362:CDS
GAACATGGGAAATGTTTGCT+TGG 0.481022 3.1:+77187371 MS.gene06362:intron
GTGGAAGATGTAAACCTAAT+CGG 0.481109 3.1:+77187420 MS.gene06362:CDS
ACTCTCCCTCTATGTTGGTA+TGG 0.486306 3.1:+77187102 MS.gene06362:CDS
ATTCTAGACGGCTCTGAAGT+AGG 0.488461 3.1:+77187396 MS.gene06362:CDS
AAGGCCAAGCATTCCATCTA+CGG 0.491428 3.1:-77186439 None:intergenic
TCAAGAAAATATGGCCTTGG+TGG 0.495645 3.1:-77185269 None:intergenic
CACCCCGTAGATGGAATGCT+TGG 0.499828 3.1:+77186435 MS.gene06362:CDS
TACCATCACTTTGTCTAGCA+TGG 0.505530 3.1:-77187609 None:intergenic
CGAAAACGATTCAAGAATGA+AGG 0.508091 3.1:-77184446 None:intergenic
AGGCCAAGCATTCCATCTAC+GGG 0.508129 3.1:-77186438 None:intergenic
GTGCCATACGAACTTTAAGT+TGG 0.511112 3.1:-77185738 None:intergenic
GCAGATCATTACTCATCTCT+TGG 0.518717 3.1:+77185670 MS.gene06362:CDS
TATAATGTGACTATCAACAT+TGG 0.520628 3.1:+77185242 MS.gene06362:CDS
CTAGGCCGGTAAAGCGGATG+TGG 0.520658 3.1:-77185544 None:intergenic
ACAATGAAAAGCAGTTGATA+GGG 0.527865 3.1:+77187636 MS.gene06362:CDS
GTGATGCACGGATGCACAGA+GGG 0.529685 3.1:-77185593 None:intergenic
GGAGCTGAACTTGTTCTTGG+AGG 0.531520 3.1:+77186724 MS.gene06362:CDS
GATGACGACGACGACGATGA+AGG 0.535925 3.1:-77184419 None:intergenic
CATGGGACTAAGTCATTGCT+AGG 0.535975 3.1:-77185562 None:intergenic
AACTTGTTCTTGGAGGGAAG+AGG 0.539126 3.1:+77186731 MS.gene06362:CDS
TGGAATGCTTGGCCTTGGCA+GGG 0.541186 3.1:+77186446 MS.gene06362:CDS
GGAATGCTTGGCCTTGGCAG+GGG 0.545359 3.1:+77186447 MS.gene06362:CDS
GAGCTGAACTTGTTCTTGGA+GGG 0.545394 3.1:+77186725 MS.gene06362:CDS
TACTAATCTCTCGACGACAT+TGG 0.546672 3.1:-77186603 None:intergenic
CATTCCATCTACGGGGTGGT+AGG 0.549212 3.1:-77186430 None:intergenic
ATATCACAGCTGAATGGTCA+GGG 0.557396 3.1:+77186483 MS.gene06362:CDS
CTGTGCATCCGTGCATCACA+CGG 0.557548 3.1:+77185597 MS.gene06362:CDS
TCAGCAAACATTACTCAGCA+GGG 0.557841 3.1:+77186701 MS.gene06362:intron
ATAGAGAAATCATGAAGTCA+GGG 0.558907 3.1:+77184255 None:intergenic
AGGTTGTTCATATGAAAGAA+TGG 0.559496 3.1:-77184399 None:intergenic
CACAGAGGGGATGCCTGCAT+GGG 0.564456 3.1:-77185579 None:intergenic
GGACTAAGTCATTGCTAGGC+CGG 0.569566 3.1:-77185558 None:intergenic
GTTTGCTTGGGCATTCTAGA+CGG 0.569919 3.1:+77187384 MS.gene06362:CDS
GTAGTTATCCGTGTGATGCA+CGG 0.570573 3.1:-77185605 None:intergenic
ACCAAACTCTCCCTCTATGT+TGG 0.574564 3.1:+77187097 MS.gene06362:CDS
TTAAAGTTCGTATGGCACTT+GGG 0.575859 3.1:+77185743 MS.gene06362:CDS
ACACGGGTAGCGACCTAACA+TGG 0.578697 3.1:+77185297 MS.gene06362:CDS
ACCTGAGAGCAACGCGAACA+AGG 0.580548 3.1:-77185335 None:intergenic
GGTTTAGTGAGAAATGTCGT+TGG 0.585900 3.1:+77186504 MS.gene06362:CDS
GCAATGACTTAGTCCCATGC+AGG 0.592637 3.1:+77185566 MS.gene06362:CDS
CAAGAAAATATGGCCTTGGT+GGG 0.593840 3.1:-77185268 None:intergenic
TTTCCATATGTAGTTGACGA+AGG 0.600659 3.1:+77187038 MS.gene06362:intron
AGCTTGATATCACAGCTGAA+TGG 0.601370 3.1:+77186477 MS.gene06362:CDS
TGTTTGAGTGCACAAGGCGG+AGG 0.601478 3.1:+77186531 MS.gene06362:CDS
AGTCCAACTTAAAGTTCGTA+TGG 0.601835 3.1:+77185735 MS.gene06362:CDS
ATTCAGCTGTGATATCAAGC+TGG 0.604358 3.1:-77186475 None:intergenic
AGACGGCTCTGAAGTAGGAG+TGG 0.605898 3.1:+77187401 MS.gene06362:CDS
AAACCAAGCTAAACAAGTAG+AGG 0.606468 3.1:-77184315 None:intergenic
TAGTTGACGAAGGAATTAGC+TGG 0.606843 3.1:+77187048 MS.gene06362:intron
AAATTGTTCTTCCAGAACAT+GGG 0.610504 3.1:+77187357 MS.gene06362:intron
ATAATCAGATATGCTTCAGG+AGG 0.624631 3.1:-77187225 None:intergenic
GGACACTGTTTGAGTGCACA+AGG 0.625207 3.1:+77186525 MS.gene06362:CDS
ATGAAAAGCAGTTGATAGGG+TGG 0.632654 3.1:+77187639 MS.gene06362:CDS
ATCCATGCTAGACAAAGTGA+TGG 0.638414 3.1:+77187607 MS.gene06362:CDS
TCAACATTGGGTACCCACCA+AGG 0.642379 3.1:+77185255 MS.gene06362:CDS
GATAAACATTTCCATGAACC+GGG 0.645327 3.1:-77184490 None:intergenic
AGCAAACATTACTCAGCAGG+GGG 0.654958 3.1:+77186703 MS.gene06362:intron
CAGCAAACATTACTCAGCAG+GGG 0.656453 3.1:+77186702 MS.gene06362:intron
TCATTGCTAGGCCGGTAAAG+CGG 0.656612 3.1:-77185550 None:intergenic
TAATCAGATATGCTTCAGGA+GGG 0.677945 3.1:-77187224 None:intergenic
GAAGATGTAAACCTAATCGG+AGG 0.690670 3.1:+77187423 MS.gene06362:CDS
CAAGCATTCCATCTACGGGG+TGG 0.700753 3.1:-77186434 None:intergenic
TGTGATGCACGGATGCACAG+AGG 0.715403 3.1:-77185594 None:intergenic
CACTGTTTGAGTGCACAAGG+CGG 0.732542 3.1:+77186528 MS.gene06362:CDS
GGCCAAGCATTCCATCTACG+GGG 0.749113 3.1:-77186437 None:intergenic
TGATGCACGGATGCACAGAG+GGG 0.795188 3.1:-77185592 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAATAAAACATCTTTATA+AGG + chr3.1:77184688-77184707 MS.gene06362:intron 10.0%
!! TAAATACTATTATTAGTTAA+TGG - chr3.1:77186102-77186121 None:intergenic 10.0%
!! TTTATTATTCAAATTACTTT+AGG - chr3.1:77184677-77184696 None:intergenic 10.0%
!!! CTTTTTTTTTAATATATAGA+TGG + chr3.1:77184769-77184788 MS.gene06362:intron 10.0%
!! AAAAAAAAAGCTTTCAATTT+GGG - chr3.1:77184759-77184778 None:intergenic 15.0%
!! AAAGTTTCCAATTTATATAT+GGG + chr3.1:77186049-77186068 MS.gene06362:intron 15.0%
!! ATTATTAGTTAATGGTATTA+TGG - chr3.1:77186094-77186113 None:intergenic 15.0%
!! CTAATAATAGTATTTACTAA+TGG + chr3.1:77186106-77186125 MS.gene06362:intron 15.0%
!! TAAAAAAAAAGCTTTCAATT+TGG - chr3.1:77184760-77184779 None:intergenic 15.0%
!! TAAGTATAATTTATTCTGTT+TGG + chr3.1:77184928-77184947 MS.gene06362:intron 15.0%
!! TTTATTAAGAAGTAAAAATC+AGG + chr3.1:77186340-77186359 MS.gene06362:intron 15.0%
!!! TATTGAAGATTAATTTTGAT+AGG - chr3.1:77185508-77185527 None:intergenic 15.0%
!!! TGATTTTTACTTCTTAATAA+AGG - chr3.1:77186341-77186360 None:intergenic 15.0%
!! AAAAGATAAAGCAAAAAAAG+TGG - chr3.1:77187525-77187544 None:intergenic 20.0%
!! AACAAAGAGAATGTAAAAAA+AGG - chr3.1:77184540-77184559 None:intergenic 20.0%
!! AACTACATATGGAAATAAAA+CGG - chr3.1:77187033-77187052 None:intergenic 20.0%
!! AAGTTTCCAATTTATATATG+GGG + chr3.1:77186050-77186069 MS.gene06362:intron 20.0%
!! AATCAATTGTAAAAACCAAT+TGG - chr3.1:77185092-77185111 None:intergenic 20.0%
!! ACAAAGAAAAACATGATTAT+GGG - chr3.1:77184726-77184745 None:intergenic 20.0%
!! ATTATTCAAATTACTTTAGG+AGG - chr3.1:77184674-77184693 None:intergenic 20.0%
!! GAAAGTTTCCAATTTATATA+TGG + chr3.1:77186048-77186067 MS.gene06362:intron 20.0%
!! GTGATTGAACAATAAATTTA+AGG - chr3.1:77185120-77185139 None:intergenic 20.0%
!! TAAAATAACAGAACAAAACA+TGG - chr3.1:77184649-77184668 None:intergenic 20.0%
!! TAAACTACTATTCTAAGTTT+GGG + chr3.1:77186148-77186167 MS.gene06362:intron 20.0%
!! TTAATAAAGGATTAAGTGTA+TGG - chr3.1:77186328-77186347 None:intergenic 20.0%
!!! AAAATTGATTTTGACATGTT+TGG + chr3.1:77184898-77184917 MS.gene06362:intron 20.0%
!!! AATTTTGTCACCTTAAAAAA+TGG - chr3.1:77184864-77184883 None:intergenic 20.0%
!!! ATATTTTCTTGATATTGACA+CGG + chr3.1:77185280-77185299 MS.gene06362:CDS 20.0%
!!! CATTCAAAATCATTTTTTGT+TGG + chr3.1:77185156-77185175 MS.gene06362:intron 20.0%
!!! TTCATTTTTTTTGTTTCCTT+CGG + chr3.1:77184561-77184580 MS.gene06362:intron 20.0%
! AACATACACATAAATTGGAA+CGG - chr3.1:77184834-77184853 None:intergenic 25.0%
! ACTTCATATACACTTCTAAA+AGG - chr3.1:77187135-77187154 None:intergenic 25.0%
! ATAATGTGACTATCAACATT+GGG + chr3.1:77185243-77185262 MS.gene06362:CDS 25.0%
! CCAATTTATGTGTATGTTAT+AGG + chr3.1:77184836-77184855 MS.gene06362:intron 25.0%
! CCTATAACATACACATAAAT+TGG - chr3.1:77184839-77184858 None:intergenic 25.0%
! CTAAACTACTATTCTAAGTT+TGG + chr3.1:77186147-77186166 MS.gene06362:intron 25.0%
! CTAATCTCATTTCAAGAAAA+AGG - chr3.1:77185431-77185450 None:intergenic 25.0%
! GACAAAGAAAAACATGATTA+TGG - chr3.1:77184727-77184746 None:intergenic 25.0%
! GTGTCAATATCAAGAAAATA+TGG - chr3.1:77185281-77185300 None:intergenic 25.0%
! GTTTAGAAATAAGAACTTGA+TGG - chr3.1:77186133-77186152 None:intergenic 25.0%
! TATAACATAAAGCTAGAAGT+TGG + chr3.1:77184965-77184984 MS.gene06362:intron 25.0%
! TATAATGTGACTATCAACAT+TGG + chr3.1:77185242-77185261 MS.gene06362:CDS 25.0%
! TATGTTCTCAACTTTACAAA+TGG + chr3.1:77185712-77185731 MS.gene06362:CDS 25.0%
! TCACTAATACGAGAAAATAT+TGG + chr3.1:77186985-77187004 MS.gene06362:intron 25.0%
! TTATCAAGCACTAATTTCTT+GGG + chr3.1:77186822-77186841 MS.gene06362:CDS 25.0%
!! AATCATATCAAGTGATTTTG+TGG + chr3.1:77184806-77184825 MS.gene06362:intron 25.0%
!! AATTGATAATATCCGTTAAC+AGG - chr3.1:77187489-77187508 None:intergenic 25.0%
!! TATTTTCTTGATATTGACAC+GGG + chr3.1:77185281-77185300 MS.gene06362:CDS 25.0%
!! TTTAAAATGCTTGAAATTCG+AGG - chr3.1:77186874-77186893 None:intergenic 25.0%
!!! AACTTTCACTTTAAAATCTC+CGG - chr3.1:77186035-77186054 None:intergenic 25.0%
!!! AAGGTGACAAAATTGATTTT+AGG + chr3.1:77184870-77184889 MS.gene06362:intron 25.0%
!!! AGGTGACAAAATTGATTTTA+GGG + chr3.1:77184871-77184890 MS.gene06362:intron 25.0%
!!! GTTATAGGTTCCATTTTTTA+AGG + chr3.1:77184851-77184870 MS.gene06362:intron 25.0%
!!! TCAAAATCATTTTTTGTTGG+CGG + chr3.1:77185159-77185178 MS.gene06362:intron 25.0%
!!! TTCAAAGTTGTTAATTTGCT+AGG - chr3.1:77185400-77185419 None:intergenic 25.0%
!!! TTTGTTTTCATAAACTATCC+CGG + chr3.1:77185953-77185972 MS.gene06362:intron 25.0%
AAATATCTCTGTGTATGTTC+TGG + chr3.1:77186241-77186260 MS.gene06362:intron 30.0%
AAATTGTTCTTCCAGAACAT+GGG + chr3.1:77187357-77187376 MS.gene06362:intron 30.0%
AATAACAGAACAAAACATGG+AGG - chr3.1:77184646-77184665 None:intergenic 30.0%
ACATACACATAAATTGGAAC+GGG - chr3.1:77184833-77184852 None:intergenic 30.0%
ACCTGCATATGTTAAAAGTA+AGG - chr3.1:77185220-77185239 None:intergenic 30.0%
AGAAAAACATGATTATGGGA+AGG - chr3.1:77184722-77184741 None:intergenic 30.0%
AGAACATACACAGAGATATT+TGG - chr3.1:77186242-77186261 None:intergenic 30.0%
AGGTTGTTCATATGAAAGAA+TGG - chr3.1:77184402-77184421 None:intergenic 30.0%
ATAACAGAACAAAACATGGA+GGG - chr3.1:77184645-77184664 None:intergenic 30.0%
ATATCAAGAAAATATGGCCT+TGG - chr3.1:77185275-77185294 None:intergenic 30.0%
ATGGAAATGTTTATCCTGTT+GGG + chr3.1:77184498-77184517 MS.gene06362:CDS 30.0%
CAGACATACATATATCTATC+TGG - chr3.1:77185462-77185481 None:intergenic 30.0%
CCTGCATATGTTAAAAGTAA+GGG - chr3.1:77185219-77185238 None:intergenic 30.0%
CTTATCAAGCACTAATTTCT+TGG + chr3.1:77186821-77186840 MS.gene06362:CDS 30.0%
GATATAATCAGATATGCTTC+AGG - chr3.1:77187231-77187250 None:intergenic 30.0%
TGTAAGCCCCATATATAAAT+TGG - chr3.1:77186059-77186078 None:intergenic 30.0%
TGTTTATGATTCTTCTCGAT+TGG + chr3.1:77186572-77186591 MS.gene06362:CDS 30.0%
TTGAATCTATCTACTGACAT+AGG - chr3.1:77186209-77186228 None:intergenic 30.0%
! ACAATGAAAAGCAGTTGATA+GGG + chr3.1:77187636-77187655 MS.gene06362:CDS 30.0%
! CCTTATTTCCATTATTTCTC+CGG - chr3.1:77185975-77185994 None:intergenic 30.0%
! CTTATTTCCATTATTTCTCC+GGG - chr3.1:77185974-77185993 None:intergenic 30.0%
! CTTGAAGAAAGTGATTAGTT+AGG - chr3.1:77187266-77187285 None:intergenic 30.0%
! TGCTAGGTAATTTTGAATGT+TGG - chr3.1:77185384-77185403 None:intergenic 30.0%
! TTTTTCCATACCAACATAGA+GGG - chr3.1:77187110-77187129 None:intergenic 30.0%
!! ATTTCAAGTTCAAGTGCAAA+TGG + chr3.1:77184368-77184387 MS.gene06362:CDS 30.0%
!! GGTGACAAAATTGATTTTAG+GGG + chr3.1:77184872-77184891 MS.gene06362:intron 30.0%
!! TTGGTGCATGTTTTAAATTG+CGG + chr3.1:77184984-77185003 MS.gene06362:intron 30.0%
!! TTGGTTATTTTATGCAGATG+CGG + chr3.1:77186381-77186400 MS.gene06362:intron 30.0%
!!! GCTATCTAGTACAACTTTTT+TGG + chr3.1:77186362-77186381 MS.gene06362:intron 30.0%
!!! TTTAGGTTTTTAGTCCTAGT+TGG + chr3.1:77185833-77185852 MS.gene06362:intron 30.0%
AAAACCTAAAGAAGTGAGAG+TGG - chr3.1:77185823-77185842 None:intergenic 35.0%
AAACCAAGCTAAACAAGTAG+AGG - chr3.1:77184318-77184337 None:intergenic 35.0%
AAACTATCCCGGAGAAATAA+TGG + chr3.1:77185964-77185983 MS.gene06362:intron 35.0%
AACATGGGAAATGTTTGCTT+GGG + chr3.1:77187372-77187391 MS.gene06362:CDS 35.0%
ACTACTATTCTAAGTTTGGG+TGG + chr3.1:77186151-77186170 MS.gene06362:intron 35.0%
AGTCCAACTTAAAGTTCGTA+TGG + chr3.1:77185735-77185754 MS.gene06362:CDS 35.0%
ATAATCAGATATGCTTCAGG+AGG - chr3.1:77187228-77187247 None:intergenic 35.0%
ATTCCTTCGTCAACTACATA+TGG - chr3.1:77187044-77187063 None:intergenic 35.0%
CAAATTGTTCTTCCAGAACA+TGG + chr3.1:77187356-77187375 MS.gene06362:intron 35.0%
CATGGAAATGTTTATCCTGT+TGG + chr3.1:77184497-77184516 MS.gene06362:CDS 35.0%
CATTGAGTTTCTCGAAATCA+TGG - chr3.1:77185053-77185072 None:intergenic 35.0%
CGAAAACGATTCAAGAATGA+AGG - chr3.1:77184449-77184468 None:intergenic 35.0%
CTACTATTCTAAGTTTGGGT+GGG + chr3.1:77186152-77186171 MS.gene06362:intron 35.0%
GACAATGAAAAGCAGTTGAT+AGG + chr3.1:77187635-77187654 MS.gene06362:CDS 35.0%
GATAAACATTTCCATGAACC+GGG - chr3.1:77184493-77184512 None:intergenic 35.0%
GGATAAACATTTCCATGAAC+CGG - chr3.1:77184494-77184513 None:intergenic 35.0%
GGGTATGTAAAGCCTATTTA+AGG - chr3.1:77185797-77185816 None:intergenic 35.0%
GTGGAAGATGTAAACCTAAT+CGG + chr3.1:77187420-77187439 MS.gene06362:CDS 35.0%
TAAAGAAGTGAGAGTGGTAT+GGG - chr3.1:77185817-77185836 None:intergenic 35.0%
TAATCAGATATGCTTCAGGA+GGG - chr3.1:77187227-77187246 None:intergenic 35.0%
TTAAAGTTCGTATGGCACTT+GGG + chr3.1:77185743-77185762 MS.gene06362:CDS 35.0%
TTTATGCCTTTCTTTCTCCT+AGG + chr3.1:77184590-77184609 MS.gene06362:intron 35.0%
TTTCCATATGTAGTTGACGA+AGG + chr3.1:77187038-77187057 MS.gene06362:intron 35.0%
! ATGCTGACATCTTTGGATTT+TGG - chr3.1:77187689-77187708 None:intergenic 35.0%
! CCGGAGAAATAATGGAAATA+AGG + chr3.1:77185972-77185991 MS.gene06362:intron 35.0%
! CTTTTTCCATACCAACATAG+AGG - chr3.1:77187111-77187130 None:intergenic 35.0%
! GCATAGTTCATCAAGAGTTT+TGG - chr3.1:77187550-77187569 None:intergenic 35.0%
! TCTTCAGGTGCTTCTTTTAT+GGG - chr3.1:77187078-77187097 None:intergenic 35.0%
! TCTTCATGCCTTTTCCTATT+TGG + chr3.1:77184619-77184638 MS.gene06362:intron 35.0%
! TTCTTGAATCGTTTTCGTTC+TGG + chr3.1:77184452-77184471 MS.gene06362:CDS 35.0%
!! CCCTTACTTTTAACATATGC+AGG + chr3.1:77185216-77185235 MS.gene06362:intron 35.0%
!! TATTGGCTCATTGCTTAACA+CGG + chr3.1:77187002-77187021 MS.gene06362:intron 35.0%
!! TCTACTTGTTTAGCTTGGTT+TGG + chr3.1:77184317-77184336 MS.gene06362:CDS 35.0%
!!! CATCTTTGGATTTTGGAACT+CGG - chr3.1:77187682-77187701 None:intergenic 35.0%
AACGCTTATGCTATCCAACT+AGG - chr3.1:77185850-77185869 None:intergenic 40.0%
AAGCAACCTAGGAGAAAGAA+AGG - chr3.1:77184599-77184618 None:intergenic 40.0%
AAGGCATAAAGTGAAACCGA+AGG - chr3.1:77184580-77184599 None:intergenic 40.0%
AGCAAACATTTCCCATGTTC+TGG - chr3.1:77187371-77187390 None:intergenic 40.0%
AGCTTGATATCACAGCTGAA+TGG + chr3.1:77186477-77186496 MS.gene06362:CDS 40.0%
ATATCACAGCTGAATGGTCA+GGG + chr3.1:77186483-77186502 MS.gene06362:CDS 40.0%
ATCCATGCTAGACAAAGTGA+TGG + chr3.1:77187607-77187626 MS.gene06362:CDS 40.0%
ATGGATATGTCTGCATACAC+AGG - chr3.1:77187593-77187612 None:intergenic 40.0%
ATGTAAACCTAATCGGAGGT+AGG + chr3.1:77187427-77187446 MS.gene06362:intron 40.0%
ATTCAGCTGTGATATCAAGC+TGG - chr3.1:77186478-77186497 None:intergenic 40.0%
CATACCACTCTCACTTCTTT+AGG + chr3.1:77185816-77185835 MS.gene06362:intron 40.0%
CATCACATTGAAGCCATGTT+AGG - chr3.1:77185313-77185332 None:intergenic 40.0%
CTAAAGAAGTGAGAGTGGTA+TGG - chr3.1:77185818-77185837 None:intergenic 40.0%
CTGATGCTTGTTCCTGTTAA+CGG + chr3.1:77187474-77187493 MS.gene06362:intron 40.0%
CTTAAAGTTCGTATGGCACT+TGG + chr3.1:77185742-77185761 MS.gene06362:CDS 40.0%
GAACATGGGAAATGTTTGCT+TGG + chr3.1:77187371-77187390 MS.gene06362:intron 40.0%
GAAGATGTAAACCTAATCGG+AGG + chr3.1:77187423-77187442 MS.gene06362:CDS 40.0%
GAGTTCGAATATGCACCAAT+TGG + chr3.1:77185074-77185093 MS.gene06362:intron 40.0%
GCAGATCATTACTCATCTCT+TGG + chr3.1:77185670-77185689 MS.gene06362:CDS 40.0%
GGTTTAGTGAGAAATGTCGT+TGG + chr3.1:77186504-77186523 MS.gene06362:CDS 40.0%
GTGCCATACGAACTTTAAGT+TGG - chr3.1:77185741-77185760 None:intergenic 40.0%
GTGTCAGAAGTTGTAACAAC+CGG + chr3.1:77186013-77186032 MS.gene06362:intron 40.0%
GTTCCTCTACTTGTTTAGCT+TGG + chr3.1:77184312-77184331 MS.gene06362:CDS 40.0%
TACCATCACTTTGTCTAGCA+TGG - chr3.1:77187612-77187631 None:intergenic 40.0%
TACTAATCTCTCGACGACAT+TGG - chr3.1:77186606-77186625 None:intergenic 40.0%
TACTGACATAGGCATTTGTG+AGG - chr3.1:77186198-77186217 None:intergenic 40.0%
TAGTTGACGAAGGAATTAGC+TGG + chr3.1:77187048-77187067 MS.gene06362:intron 40.0%
TCAGCAAACATTACTCAGCA+GGG + chr3.1:77186701-77186720 MS.gene06362:intron 40.0%
TTCAGGAGGGATTTCGAATT+GGG - chr3.1:77187214-77187233 None:intergenic 40.0%
TTGTCAGCATGACACATGTA+AGG - chr3.1:77187339-77187358 None:intergenic 40.0%
! AGCCTATTTAAGGCTAGCAA+AGG - chr3.1:77185787-77185806 None:intergenic 40.0%
! ATGATTCTTCTCGATTGGCT+TGG + chr3.1:77186577-77186596 MS.gene06362:CDS 40.0%
! CAAGAAAATATGGCCTTGGT+GGG - chr3.1:77185271-77185290 None:intergenic 40.0%
! CTGAAACACTTGTTGCAGAA+AGG - chr3.1:77186277-77186296 None:intergenic 40.0%
! GCCTATTTAAGGCTAGCAAA+GGG - chr3.1:77185786-77185805 None:intergenic 40.0%
! GTCTTCAGGTGCTTCTTTTA+TGG - chr3.1:77187079-77187098 None:intergenic 40.0%
! GTTCTTTTTACGTACCCAAC+AGG - chr3.1:77184515-77184534 None:intergenic 40.0%
! TCAAGAAAATATGGCCTTGG+TGG - chr3.1:77185272-77185291 None:intergenic 40.0%
!! ACCCTTTGCTAGCCTTAAAT+AGG + chr3.1:77185782-77185801 MS.gene06362:intron 40.0%
!! ATGAAAAGCAGTTGATAGGG+TGG + chr3.1:77187639-77187658 MS.gene06362:CDS 40.0%
!! CGTTGACATAGTCTTGTTTG+TGG - chr3.1:77186912-77186931 None:intergenic 40.0%
!!! TCGTTTTCGTTCTGGTTCAT+CGG + chr3.1:77184460-77184479 MS.gene06362:CDS 40.0%
!!! TTCTTGCTGTTTTTGACGCT+GGG + chr3.1:77186770-77186789 MS.gene06362:CDS 40.0%
AACCTAATCGGAGGTAGGAA+TGG + chr3.1:77187432-77187451 MS.gene06362:intron 45.0%
AAGGCCAAGCATTCCATCTA+CGG - chr3.1:77186442-77186461 None:intergenic 45.0%
ACCAAACTCTCCCTCTATGT+TGG + chr3.1:77187097-77187116 MS.gene06362:CDS 45.0%
ACCAACATAGAGGGAGAGTT+TGG - chr3.1:77187101-77187120 None:intergenic 45.0%
ACTCTCCCTCTATGTTGGTA+TGG + chr3.1:77187102-77187121 MS.gene06362:CDS 45.0%
AGCAAACATTACTCAGCAGG+GGG + chr3.1:77186703-77186722 MS.gene06362:intron 45.0%
AGGCATGAAGAAAGCAACCT+AGG - chr3.1:77184610-77184629 None:intergenic 45.0%
ATGGAGGGCCAAATAGGAAA+AGG - chr3.1:77184630-77184649 None:intergenic 45.0%
CAAAACATGGAGGGCCAAAT+AGG - chr3.1:77184636-77184655 None:intergenic 45.0%
CAGCAAACATTACTCAGCAG+GGG + chr3.1:77186702-77186721 MS.gene06362:intron 45.0%
CATGGGACTAAGTCATTGCT+AGG - chr3.1:77185565-77185584 None:intergenic 45.0%
CTCAGCAAACATTACTCAGC+AGG + chr3.1:77186700-77186719 MS.gene06362:intron 45.0%
CTTCAGGAGGGATTTCGAAT+TGG - chr3.1:77187215-77187234 None:intergenic 45.0%
CTTTCGATCTTCCACTTCCT+GGG - chr3.1:77187191-77187210 None:intergenic 45.0%
GATATCACAGCTGAATGGTC+AGG + chr3.1:77186482-77186501 MS.gene06362:CDS 45.0%
GTAGTTATCCGTGTGATGCA+CGG - chr3.1:77185608-77185627 None:intergenic 45.0%
GTTTGCTTGGGCATTCTAGA+CGG + chr3.1:77187384-77187403 MS.gene06362:CDS 45.0%
! AACTTGTTCTTGGAGGGAAG+AGG + chr3.1:77186731-77186750 MS.gene06362:CDS 45.0%
! GAGCTGAACTTGTTCTTGGA+GGG + chr3.1:77186725-77186744 MS.gene06362:CDS 45.0%
!! ATTCTAGACGGCTCTGAAGT+AGG + chr3.1:77187396-77187415 MS.gene06362:CDS 45.0%
!!! CTTCTTGCTGTTTTTGACGC+TGG + chr3.1:77186769-77186788 MS.gene06362:CDS 45.0%
AGACACCACATCCGCTTTAC+CGG + chr3.1:77185539-77185558 MS.gene06362:intron 50.0%
AGGCCAAGCATTCCATCTAC+GGG - chr3.1:77186441-77186460 None:intergenic 50.0%
ATGTCTGCATACACAGGACG+AGG - chr3.1:77187587-77187606 None:intergenic 50.0%
CACTGTTTGAGTGCACAAGG+CGG + chr3.1:77186528-77186547 MS.gene06362:CDS 50.0%
CCTATTGCACTTAGCTTCCC+AGG + chr3.1:77187171-77187190 MS.gene06362:CDS 50.0%
CCTGGGAAGCTAAGTGCAAT+AGG - chr3.1:77187174-77187193 None:intergenic 50.0%
GCAATGACTTAGTCCCATGC+AGG + chr3.1:77185566-77185585 MS.gene06362:CDS 50.0%
GCTTTCGATCTTCCACTTCC+TGG - chr3.1:77187192-77187211 None:intergenic 50.0%
GGACACTGTTTGAGTGCACA+AGG + chr3.1:77186525-77186544 MS.gene06362:CDS 50.0%
GGACTAAGTCATTGCTAGGC+CGG - chr3.1:77185561-77185580 None:intergenic 50.0%
GGCGGAGGATACATCTTCTT+TGG + chr3.1:77186546-77186565 MS.gene06362:CDS 50.0%
GTAGATGGAATGCTTGGCCT+TGG + chr3.1:77186441-77186460 MS.gene06362:CDS 50.0%
TCAACATTGGGTACCCACCA+AGG + chr3.1:77185255-77185274 MS.gene06362:CDS 50.0%
TCATTGCTAGGCCGGTAAAG+CGG - chr3.1:77185553-77185572 None:intergenic 50.0%
TGTCTGCATACACAGGACGA+GGG - chr3.1:77187586-77187605 None:intergenic 50.0%
TTCTTGGAGGGAAGAGGACT+GGG + chr3.1:77186737-77186756 MS.gene06362:CDS 50.0%
! AGAGGGAGAGTTTGGTCTTC+AGG - chr3.1:77187093-77187112 None:intergenic 50.0%
! GGAGCTGAACTTGTTCTTGG+AGG + chr3.1:77186724-77186743 MS.gene06362:CDS 50.0%
ACACGGGTAGCGACCTAACA+TGG + chr3.1:77185297-77185316 MS.gene06362:CDS 55.0%
ACCTGAGAGCAACGCGAACA+AGG - chr3.1:77185338-77185357 None:intergenic 55.0%
ACGGGGTGGTAGGAAGAATC+TGG - chr3.1:77186423-77186442 None:intergenic 55.0%
CAAGCATTCCATCTACGGGG+TGG - chr3.1:77186437-77186456 None:intergenic 55.0%
CACCCCGTAGATGGAATGCT+TGG + chr3.1:77186435-77186454 MS.gene06362:CDS 55.0%
CATTCCATCTACGGGGTGGT+AGG - chr3.1:77186433-77186452 None:intergenic 55.0%
CGCCATTCCTACCTCCGATT+AGG - chr3.1:77187437-77187456 None:intergenic 55.0%
CTGTGCATCCGTGCATCACA+CGG + chr3.1:77185597-77185616 MS.gene06362:CDS 55.0%
GATGACGACGACGACGATGA+AGG - chr3.1:77184422-77184441 None:intergenic 55.0%
GCACTTAGCTTCCCAGGAAG+TGG + chr3.1:77187177-77187196 MS.gene06362:CDS 55.0%
GGCCAAGCATTCCATCTACG+GGG - chr3.1:77186440-77186459 None:intergenic 55.0%
GTGATGCACGGATGCACAGA+GGG - chr3.1:77185596-77185615 None:intergenic 55.0%
GTTCTTGGAGGGAAGAGGAC+TGG + chr3.1:77186736-77186755 MS.gene06362:CDS 55.0%
TCTTCCTACCACCCCGTAGA+TGG + chr3.1:77186426-77186445 MS.gene06362:CDS 55.0%
TGATGCACGGATGCACAGAG+GGG - chr3.1:77185595-77185614 None:intergenic 55.0%
TGGTTCATCGGTCGTGTTCC+CGG + chr3.1:77184472-77184491 MS.gene06362:CDS 55.0%
TGTGATGCACGGATGCACAG+AGG - chr3.1:77185597-77185616 None:intergenic 55.0%
TGTTTGAGTGCACAAGGCGG+AGG + chr3.1:77186531-77186550 MS.gene06362:CDS 55.0%
! AGCTGGATTTTCCCCTGCCA+AGG - chr3.1:77186461-77186480 None:intergenic 55.0%
! GGGGGAGCTGAACTTGTTCT+TGG + chr3.1:77186721-77186740 MS.gene06362:CDS 55.0%
!! AGACGGCTCTGAAGTAGGAG+TGG + chr3.1:77187401-77187420 MS.gene06362:CDS 55.0%
!! ATGGAATGCTTGGCCTTGGC+AGG + chr3.1:77186445-77186464 MS.gene06362:CDS 55.0%
!! TGGAATGCTTGGCCTTGGCA+GGG + chr3.1:77186446-77186465 MS.gene06362:CDS 55.0%
CACAGAGGGGATGCCTGCAT+GGG - chr3.1:77185582-77185601 None:intergenic 60.0%
CTAGGCCGGTAAAGCGGATG+TGG - chr3.1:77185547-77185566 None:intergenic 60.0%
GGAGGGAAGAGGACTGGGTT+TGG + chr3.1:77186742-77186761 MS.gene06362:CDS 60.0%
TCGGTCGTGTTCCCGGTTCA+TGG + chr3.1:77184479-77184498 MS.gene06362:CDS 60.0%
! GCCTTGTTCGCGTTGCTCTC+AGG + chr3.1:77185334-77185353 MS.gene06362:CDS 60.0%
!! GGAATGCTTGGCCTTGGCAG+GGG + chr3.1:77186447-77186466 MS.gene06362:CDS 60.0%
GCACAGAGGGGATGCCTGCA+TGG - chr3.1:77185583-77185602 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 77184266 77187712 77184266 ID=MS.gene06362
chr3.1 mRNA 77184266 77187712 77184266 ID=MS.gene06362.t1;Parent=MS.gene06362
chr3.1 exon 77184266 77184519 77184266 ID=MS.gene06362.t1.exon1;Parent=MS.gene06362.t1
chr3.1 CDS 77184266 77184519 77184266 ID=cds.MS.gene06362.t1;Parent=MS.gene06362.t1
chr3.1 exon 77185238 77185355 77185238 ID=MS.gene06362.t1.exon2;Parent=MS.gene06362.t1
chr3.1 CDS 77185238 77185355 77185238 ID=cds.MS.gene06362.t1;Parent=MS.gene06362.t1
chr3.1 exon 77185541 77185764 77185541 ID=MS.gene06362.t1.exon3;Parent=MS.gene06362.t1
chr3.1 CDS 77185541 77185764 77185541 ID=cds.MS.gene06362.t1;Parent=MS.gene06362.t1
chr3.1 exon 77186398 77186622 77186398 ID=MS.gene06362.t1.exon4;Parent=MS.gene06362.t1
chr3.1 CDS 77186398 77186622 77186398 ID=cds.MS.gene06362.t1;Parent=MS.gene06362.t1
chr3.1 exon 77186705 77186843 77186705 ID=MS.gene06362.t1.exon5;Parent=MS.gene06362.t1
chr3.1 CDS 77186705 77186843 77186705 ID=cds.MS.gene06362.t1;Parent=MS.gene06362.t1
chr3.1 exon 77187051 77187251 77187051 ID=MS.gene06362.t1.exon6;Parent=MS.gene06362.t1
chr3.1 CDS 77187051 77187251 77187051 ID=cds.MS.gene06362.t1;Parent=MS.gene06362.t1
chr3.1 exon 77187372 77187444 77187372 ID=MS.gene06362.t1.exon7;Parent=MS.gene06362.t1
chr3.1 CDS 77187372 77187444 77187372 ID=cds.MS.gene06362.t1;Parent=MS.gene06362.t1
chr3.1 exon 77187603 77187712 77187603 ID=MS.gene06362.t1.exon8;Parent=MS.gene06362.t1
chr3.1 CDS 77187603 77187712 77187603 ID=cds.MS.gene06362.t1;Parent=MS.gene06362.t1
Gene Sequence

>MS.gene06362

ATGAAGTCAGGGAAATTGGTATTCTTTGTTGTTCTACTCTTGTTGAGTTCCTCTACTTGTTTAGCTTGGTTTGGTAGTAGTAGTAGTAGTAGCAAACACAAAATTTCAAGTTCAAGTGCAAATGGAAGAAACTCCATTCTTTCATATGAACAACCTTCATCGTCGTCGTCGTCATCATCGCCTTCATTCTTGAATCGTTTTCGTTCTGGTTCATCGGTCGTGTTCCCGGTTCATGGAAATGTTTATCCTGTTGGGTACGTAAAAAGAACTTCCTTTTTTTACATTCTCTTTGTTTTTCATTTTTTTTGTTTCCTTCGGTTTCACTTTATGCCTTTCTTTCTCCTAGGTTGCTTTCTTCATGCCTTTTCCTATTTGGCCCTCCATGTTTTGTTCTGTTATTTTATTCCTCCTAAAGTAATTTGAATAATAAAACATCTTTATAAGGTTTATTCACCTTCCCATAATCATGTTTTTCTTTGTCTCATTCATACCCAAATTGAAAGCTTTTTTTTTAATATATAGATGGATCTATGCATATAAAATCATATCAAGTGATTTTGTGGTCCCGTTCCAATTTATGTGTATGTTATAGGTTCCATTTTTTAAGGTGACAAAATTGATTTTAGGGGTATAAAATTGATTTTGACATGTTTGGATGTTCTTAAGTATAATTTATTCTGTTTGGAGAATTTATTCTACTATAACATAAAGCTAGAAGTTGGTGCATGTTTTAAATTGCGGTAAATTTAGCGAAATTAAGCTTTTGCAAAATCACGATGACTCGCCATGATTTCGAGAAACTCAATGCGAGTTCGAATATGCACCAATTGGTTTTTACAATTGATTTCTAACCTTAAATTTATTGTTCAATCACTTTTACATAATTAATTCATTCAAAATCATTTTTTGTTGGCGGAGAAACAAAACGTCAAAAACAATAATGCAAGTCACCCTTACTTTTAACATATGCAGGTTTTATAATGTGACTATCAACATTGGGTACCCACCAAGGCCATATTTTCTTGATATTGACACGGGTAGCGACCTAACATGGCTTCAATGTGATGCGCCTTGTTCGCGTTGCTCTCAGGTATTCTCACTCACTTTACTCATTGCCAACATTCAAAATTACCTAGCAAATTAACAACTTTGAATTGCAAAGCCTTTTTCTTGAAATGAGATTAGATTCTAGACCAGATAGATATATGTATGTCTGTAGAATCTGTTTGATTAAAATTTCCTATCAAAATTAATCTTCAATAACTGTTTTTTCAGACACCACATCCGCTTTACCGGCCTAGCAATGACTTAGTCCCATGCAGGCATCCCCTCTGTGCATCCGTGCATCACACGGATAACTACGACTGTGAAGTCGAGCATCAGTGTGACTATGAAGTTGAGTATGCAGATCATTACTCATCTCTTGGTGTACTTGTCAATGATGTTTATGTTCTCAACTTTACAAATGGAGTCCAACTTAAAGTTCGTATGGCACTTGGGTTAGTGACTCTTTCTCACCCTTTGCTAGCCTTAAATAGGCTTTACATACCCATACCACTCTCACTTCTTTAGGTTTTTAGTCCTAGTTGGATAGCATAAGCGTTTGCTAATCATATAAGTGCTTATGTATAAGCTATATCTATAACAAAAAATAAATGAAGTCAAATTGTTTTCATATAATCTAAAATTTGTTTTCATAAACTATCCCGGAGAAATAATGGAAATAAGGTGAAAACAACGTATGTACGTGTCAGAAGTTGTAACAACCGGAGATTTTAAAGTGAAAGTTTCCAATTTATATATGGGGCTTACAATGCAAAAGTTACCATAATACCATTAACTAATAATAGTATTTACTAATGGACCATCAAGTTCTTATTTCTAAACTACTATTCTAAGTTTGGGTGGGATGTTACAGAAGTTAAACAGCCTCACAAATGCCTATGTCAGTAGATAGATTCAAATAAGTCAATCCAAATATCTCTGTGTATGTTCTGGCTAAATTTAGCCTTTCTGCAACAAGTGTTTCAGAAAAACACAATTGTTGCATGATGATTATCCATACACTTAATCCTTTATTAAGAAGTAAAAATCAGGCTATCTAGTACAACTTTTTTGGTTATTTTATGCAGATGCGGCTATGATCAGATTTTTCCAGATTCTTCCTACCACCCCGTAGATGGAATGCTTGGCCTTGGCAGGGGAAAATCCAGCTTGATATCACAGCTGAATGGTCAGGGTTTAGTGAGAAATGTCGTTGGACACTGTTTGAGTGCACAAGGCGGAGGATACATCTTCTTTGGAGATGTTTATGATTCTTCTCGATTGGCTTGGACTCCAATGTCGTCGAGAGATTAGTAAGTAGATCTTCACAAGTCAAATACACATTAATTGTAATGATATTAATATTTCTATCTACTAATTTACGATTTTTCTCAGCAAACATTACTCAGCAGGGGGAGCTGAACTTGTTCTTGGAGGGAAGAGGACTGGGTTTGGAAATCTTCTTGCTGTTTTTGACGCTGGGAGTTCTTATACTTACTTCAACTCTAATGCTTATCAAGCACTAATTTCTTGGGTCAGTTGAAAGCAATTTTCGCAATATCCTCGAATTTCAAGCATTTTAAAATGCATATGCTATTACCACAAACAAGACTATGTCAACGTCATCATACAATCTCTAAATTGTTCGAAAAAAATATATAAATTATTTATTTCTTCACTAATACGAGAAAATATTGGCTCATTGCTTAACACGGTTATTCCGTTTTATTTCCATATGTAGTTGACGAAGGAATTAGCTGGAAAGCCCATAAAAGAAGCACCTGAAGACCAAACTCTCCCTCTATGTTGGTATGGAAAAAGACCTTTTAGAAGTGTATATGAAGTCAGAAAATACTTCAAGCCTATTGCACTTAGCTTCCCAGGAAGTGGAAGATCGAAAGCCCAATTCGAAATCCCTCCTGAAGCATATCTGATTATATCAGTGAGTCAAGTCCTAACTAATCACTTTCTTCAAGAATCAAGATTTACTTTTTTATTGCTATCAAAAACTCACAAGTAACTGATACCTTACATGTGTCATGCTGACAAATTGTTCTTCCAGAACATGGGAAATGTTTGCTTGGGCATTCTAGACGGCTCTGAAGTAGGAGTGGAAGATGTAAACCTAATCGGAGGTAGGAATGGCGTTAATCTCTATTTTCTTCTGATGCTTGTTCCTGTTAACGGATATTATCAATTGTGCTGCTTTTGTCCACTTTTTTTGCTTTATCTTTTCACCAAAACTCTTGATGAACTATGCATAATTAAGAAAGCCCTCGTCCTGTGTATGCAGACATATCCATGCTAGACAAAGTGATGGTATTTGACAATGAAAAGCAGTTGATAGGGTGGACAGCAGCAGATTGTAACCGAGTTCCAAAATCCAAAGATGTCAGCATTTGA
Protein sequence

>MS.gene06362.t1

MKSGKLVFFVVLLLLSSSTCLAWFGSSSSSSKHKISSSSANGRNSILSYEQPSSSSSSSSPSFLNRFRSGSSVVFPVHGNVYPVGFYNVTINIGYPPRPYFLDIDTGSDLTWLQCDAPCSRCSQTPHPLYRPSNDLVPCRHPLCASVHHTDNYDCEVEHQCDYEVEYADHYSSLGVLVNDVYVLNFTNGVQLKVRMALGCGYDQIFPDSSYHPVDGMLGLGRGKSSLISQLNGQGLVRNVVGHCLSAQGGGYIFFGDVYDSSRLAWTPMSSRDYKHYSAGGAELVLGGKRTGFGNLLAVFDAGSSYTYFNSNAYQALISWLTKELAGKPIKEAPEDQTLPLCWYGKRPFRSVYEVRKYFKPIALSFPGSGRSKAQFEIPPEAYLIISNMGNVCLGILDGSEVGVEDVNLIGDISMLDKVMVFDNEKQLIGWTAADCNRVPKSKDVSI