Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063743.t1 | XP_003609930.2 | 96 | 808 | 32 | 0 | 2 | 809 | 157 | 964 | 0.00E+00 | 1556.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063743.t1 | Q9SMZ4 | 65.5 | 805 | 271 | 4 | 10 | 809 | 262 | 1064 | 2.6e-309 | 1062.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063743.t1 | G7JS28 | 96.0 | 808 | 32 | 0 | 2 | 809 | 241 | 1048 | 0.0e+00 | 1556.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050800 | MS.gene063743 | 0.823907 | 1.08E-53 | -1.69E-46 |
| MS.gene052922 | MS.gene063743 | 0.846071 | 2.73E-59 | -1.69E-46 |
| MS.gene053175 | MS.gene063743 | 0.818011 | 2.45E-52 | -1.69E-46 |
| MS.gene054549 | MS.gene063743 | 0.805273 | 1.45E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063743.t1 | MTR_4g124470 | 96.040 | 808 | 32 | 0 | 2 | 809 | 157 | 964 | 0.0 | 1620 |
| MS.gene063743.t1 | MTR_4g124470 | 96.040 | 808 | 32 | 0 | 2 | 809 | 168 | 975 | 0.0 | 1619 |
| MS.gene063743.t1 | MTR_4g124470 | 96.040 | 808 | 32 | 0 | 2 | 809 | 241 | 1048 | 0.0 | 1617 |
| MS.gene063743.t1 | MTR_4g124470 | 95.092 | 815 | 33 | 1 | 2 | 809 | 241 | 1055 | 0.0 | 1608 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063743.t1 | AT4G33150 | 65.466 | 805 | 271 | 4 | 10 | 809 | 262 | 1064 | 0.0 | 1100 |
| MS.gene063743.t1 | AT4G33150 | 65.466 | 805 | 271 | 4 | 10 | 809 | 262 | 1064 | 0.0 | 1100 |
| MS.gene063743.t1 | AT4G33150 | 65.466 | 805 | 271 | 4 | 10 | 809 | 262 | 1064 | 0.0 | 1100 |
| MS.gene063743.t1 | AT4G33150 | 64.938 | 482 | 164 | 2 | 331 | 809 | 3 | 482 | 0.0 | 657 |
Find 171 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACCGCAACTCTTTAATTTA+TGG | 0.062968 | 8.2:-8939960 | MS.gene063743:CDS |
| CAAACTTGCCTGCTCATTTA+AGG | 0.104303 | 8.2:-8943604 | MS.gene063743:CDS |
| AATAGATGTTGATATCATTT+TGG | 0.140848 | 8.2:-8942211 | MS.gene063743:CDS |
| GACTAGGCTTCGCAATATTT+TGG | 0.165045 | 8.2:-8943677 | MS.gene063743:intron |
| GTCCCAATTTGTCACAAATT+TGG | 0.171779 | 8.2:-8943645 | MS.gene063743:CDS |
| TTAATTTATGGAGATTTATA+TGG | 0.210990 | 8.2:-8939948 | MS.gene063743:CDS |
| AAACACTTTCATGGGATCTT+TGG | 0.220013 | 8.2:+8945220 | None:intergenic |
| AAGCCAAATTTGTGACAAAT+TGG | 0.238819 | 8.2:+8943642 | None:intergenic |
| GCACCAGACACATCCGTTAT+TGG | 0.303263 | 8.2:-8945021 | MS.gene063743:intron |
| AATGGATTGTTGGCATCTTC+AGG | 0.309153 | 8.2:+8940710 | None:intergenic |
| CAATTGATTCACCCTTCTTC+AGG | 0.309166 | 8.2:-8944657 | MS.gene063743:intron |
| CTTAGTTAATTGCATGTATT+GGG | 0.310022 | 8.2:-8944812 | MS.gene063743:intron |
| CTGCAGCTTCAATAATATCT+AGG | 0.319514 | 8.2:+8943146 | None:intergenic |
| AACACTTTCATGGGATCTTT+GGG | 0.324739 | 8.2:+8945221 | None:intergenic |
| AGATCATGGCGACACTTTCT+AGG | 0.327865 | 8.2:-8939684 | MS.gene063743:CDS |
| AGAGCTACTTTGCTTGAATT+CGG | 0.328075 | 8.2:-8938906 | MS.gene063743:CDS |
| CACTTTGTCAAACACTTTCA+TGG | 0.328950 | 8.2:+8945211 | None:intergenic |
| TACCTGAATTTATATGCTAA+TGG | 0.330123 | 8.2:+8940692 | None:intergenic |
| AGCTGAATTCCAGTTACATT+TGG | 0.335411 | 8.2:+8942043 | None:intergenic |
| GATGCTGGTATAACAATTCT+TGG | 0.355805 | 8.2:-8941289 | MS.gene063743:CDS |
| ATACCTGCTCTGCATCCTTC+AGG | 0.358896 | 8.2:+8942178 | None:intergenic |
| GAGCTACTTTGCTTGAATTC+GGG | 0.360095 | 8.2:-8938905 | MS.gene063743:CDS |
| ATTCAAGATTTGATGAGAAA+TGG | 0.360260 | 8.2:-8944754 | MS.gene063743:CDS |
| TATGGAGATTTATATGGAAT+AGG | 0.360466 | 8.2:-8939942 | MS.gene063743:CDS |
| GGCGAAACTTTACATATTGA+TGG | 0.362283 | 8.2:-8940327 | MS.gene063743:intron |
| TGCAGATGATAAGGCTGTTC+TGG | 0.367690 | 8.2:-8942493 | MS.gene063743:CDS |
| AAAATTGGAGTGTAATGTTC+AGG | 0.372458 | 8.2:+8945057 | None:intergenic |
| TCTTAGTTAATTGCATGTAT+TGG | 0.375626 | 8.2:-8944813 | MS.gene063743:intron |
| TCCAACAGAATTTGCAAAAG+AGG | 0.376427 | 8.2:-8943778 | MS.gene063743:intron |
| TCTCCTATCAATGCTCCATC+TGG | 0.384278 | 8.2:+8939559 | None:intergenic |
| GGTATTCTATCTCCACTTCA+TGG | 0.384578 | 8.2:+8938955 | None:intergenic |
| CTGGATATTATACAAGCTTA+TGG | 0.384591 | 8.2:-8938073 | MS.gene063743:CDS |
| GAAGGCATTCCAAATGTAAC+TGG | 0.386769 | 8.2:-8942052 | MS.gene063743:CDS |
| TCCAGCTGCTGTGGGAGCTC+TGG | 0.387534 | 8.2:-8938832 | MS.gene063743:intron |
| GCGTGGTATATAATCATATA+AGG | 0.391117 | 8.2:+8943547 | None:intergenic |
| TCTCTCCTCCATGCGGAAAC+AGG | 0.392544 | 8.2:+8939318 | None:intergenic |
| ATCCATTAGCATATAAATTC+AGG | 0.392846 | 8.2:-8940694 | MS.gene063743:intron |
| TACTAGGTCATACCTATTCC+TGG | 0.394462 | 8.2:+8941250 | None:intergenic |
| GCAGATATAACTTGTGATAT+AGG | 0.397513 | 8.2:-8944712 | MS.gene063743:CDS |
| AGTTTCGCCGTGATATTTGT+AGG | 0.400233 | 8.2:+8940341 | None:intergenic |
| GCTCAAATGCTATCATCATT+TGG | 0.400718 | 8.2:-8942282 | MS.gene063743:CDS |
| TAAATTAAAGAGTTGCGGTT+TGG | 0.402978 | 8.2:+8939963 | None:intergenic |
| GATCCAGATGGAGCATTGAT+AGG | 0.408026 | 8.2:-8939562 | MS.gene063743:CDS |
| TTTATATGCTAATGGATTGT+TGG | 0.411001 | 8.2:+8940700 | None:intergenic |
| TCACCTGGAGTGTATACTTC+AGG | 0.415501 | 8.2:+8938669 | None:intergenic |
| CCGTGATATTTGTAGGTGGC+AGG | 0.430034 | 8.2:+8940348 | None:intergenic |
| ATGATTCAGCTAAAAGACTA+AGG | 0.430434 | 8.2:-8940022 | MS.gene063743:CDS |
| ACCAGAGCTCCCACAGCAGC+TGG | 0.430788 | 8.2:+8938831 | None:intergenic |
| GAATTCGGGAAAACTATTGA+TGG | 0.431573 | 8.2:-8938891 | MS.gene063743:CDS |
| TATAATCATATAAGGAGGTT+AGG | 0.433937 | 8.2:+8943555 | None:intergenic |
| ATTGCATGTATTGGGAGAAA+AGG | 0.438391 | 8.2:-8944804 | MS.gene063743:CDS |
| CATGTCCATGCTAGATGATA+AGG | 0.441776 | 8.2:-8941317 | MS.gene063743:CDS |
| AGATCAGTGCAGATTGTTGA+AGG | 0.443060 | 8.2:-8942070 | MS.gene063743:intron |
| TTCAGACAAGAGGTGTCTTA+AGG | 0.444078 | 8.2:-8938701 | MS.gene063743:CDS |
| TGATCAATTTCTGATAAATG+AGG | 0.450882 | 8.2:-8943170 | MS.gene063743:CDS |
| CGTGGAACCCTCCGTTATGA+AGG | 0.452301 | 8.2:-8939897 | MS.gene063743:intron |
| GGTGAGATGGGCTTGGACCC+AGG | 0.453772 | 8.2:-8941268 | MS.gene063743:CDS |
| TGTTAGATATGATGCAATAA+CGG | 0.453846 | 8.2:-8943859 | MS.gene063743:intron |
| ATGGGCTTGGACCCAGGAAT+AGG | 0.458978 | 8.2:-8941262 | MS.gene063743:intron |
| GATAGGAGAGGAGGATATAT+CGG | 0.461696 | 8.2:-8939545 | MS.gene063743:CDS |
| AGGAGAGCTTGCATAGTCAA+TGG | 0.463364 | 8.2:-8943584 | MS.gene063743:CDS |
| CCAATGGTATAAAACATTGT+TGG | 0.463677 | 8.2:-8942253 | MS.gene063743:CDS |
| ACAGGTTGGTGCAGATGATA+AGG | 0.465036 | 8.2:-8942502 | MS.gene063743:intron |
| AGCCAAATTTGTGACAAATT+GGG | 0.465211 | 8.2:+8943643 | None:intergenic |
| ATGGCGACACTTTCTAGGAT+TGG | 0.465848 | 8.2:-8939679 | MS.gene063743:CDS |
| AATTCTTGGTGAGATGGGCT+TGG | 0.470872 | 8.2:-8941275 | MS.gene063743:CDS |
| CAGCTGGAATACCAACAGTA+AGG | 0.471355 | 8.2:+8938847 | None:intergenic |
| AAAGCAAAAGCAGGAAAGTC+AGG | 0.472612 | 8.2:+8939996 | None:intergenic |
| AAAGCACTATGGCATGAAGC+AGG | 0.474044 | 8.2:+8939349 | None:intergenic |
| TCACAACACAACCATAAACT+TGG | 0.477682 | 8.2:+8945264 | None:intergenic |
| CTCTCCTCATTCTTTAGAGT+CGG | 0.479336 | 8.2:+8939634 | None:intergenic |
| CTCCATAAATTAAAGAGTTG+CGG | 0.481371 | 8.2:+8939958 | None:intergenic |
| GAAGCATCAACTGTCTTTCG+TGG | 0.483593 | 8.2:-8939915 | MS.gene063743:CDS |
| AGTAAAATTTCACTTACGCT+TGG | 0.484189 | 8.2:-8942399 | MS.gene063743:CDS |
| ATAACAATTCTTGGTGAGAT+GGG | 0.485910 | 8.2:-8941280 | MS.gene063743:CDS |
| TATAACAATTCTTGGTGAGA+TGG | 0.488831 | 8.2:-8941281 | MS.gene063743:CDS |
| CATTCCCCTCCATGTCTTCG+TGG | 0.489845 | 8.2:+8943829 | None:intergenic |
| ACTTTGTCAAACACTTTCAT+GGG | 0.496078 | 8.2:+8945212 | None:intergenic |
| CCGATATCACCTACCAATAA+CGG | 0.497549 | 8.2:+8945008 | None:intergenic |
| ATCCTACTCCAACACAGAAA+AGG | 0.497780 | 8.2:-8939293 | MS.gene063743:intron |
| TGTTGGTATTCCAGCTGCTG+TGG | 0.499554 | 8.2:-8938841 | MS.gene063743:CDS |
| CTTGGTAAAGTTCATGAAAA+CGG | 0.501285 | 8.2:-8942381 | MS.gene063743:CDS |
| CTACCAATAACGGATGTGTC+TGG | 0.503459 | 8.2:+8945018 | None:intergenic |
| CAAGCTCTCCTTAAATGAGC+AGG | 0.507376 | 8.2:+8943596 | None:intergenic |
| CCTGTAGGTGCCATCCGAGC+TGG | 0.508824 | 8.2:-8940378 | MS.gene063743:CDS |
| GTACCTGAAGGATGCAGAGC+AGG | 0.509916 | 8.2:-8942181 | MS.gene063743:intron |
| CCAGCTCGGATGGCACCTAC+AGG | 0.510844 | 8.2:+8940378 | None:intergenic |
| AGGCAACATCAAAAGCACTA+TGG | 0.511973 | 8.2:+8939338 | None:intergenic |
| CCACTTGGTTAACTGTCATG+TGG | 0.512401 | 8.2:-8943113 | MS.gene063743:CDS |
| TTTGGGATCTTTGTACCTGA+AGG | 0.513179 | 8.2:-8942193 | MS.gene063743:CDS |
| TATAGGGTTTAGTGAGATCA+TGG | 0.516919 | 8.2:-8939698 | MS.gene063743:intron |
| CTAGATATTATTGAAGCTGC+AGG | 0.517883 | 8.2:-8943145 | MS.gene063743:CDS |
| CGTAGCAAATGCTTGCATTG+AGG | 0.522620 | 8.2:-8941727 | MS.gene063743:intron |
| AGGATTGCGTCCAGCTCGGA+TGG | 0.524365 | 8.2:+8940368 | None:intergenic |
| TGCAGGAGGCTCCTTCCACT+TGG | 0.526358 | 8.2:-8943128 | MS.gene063743:CDS |
| CACGAAGACATGGAGGGGAA+TGG | 0.528495 | 8.2:-8943828 | MS.gene063743:CDS |
| TCATGAAAACGGCATGGAGA+AGG | 0.528840 | 8.2:-8942370 | MS.gene063743:CDS |
| AGAAATGGATGTCCACTTGT+TGG | 0.530432 | 8.2:-8944739 | MS.gene063743:CDS |
| TTGTTGGCATCTTCAGGAGA+TGG | 0.531880 | 8.2:+8940716 | None:intergenic |
| GCTACGATAATGTGACAACT+AGG | 0.532719 | 8.2:+8941744 | None:intergenic |
| TTTAGCCTTATCATCTAGCA+TGG | 0.533798 | 8.2:+8941312 | None:intergenic |
| GATGATAAGGCTAAAGATGC+TGG | 0.536549 | 8.2:-8941304 | MS.gene063743:CDS |
| GTGTATACTTCAGGTTGGAT+AGG | 0.540931 | 8.2:+8938678 | None:intergenic |
| TGCAGCTTCAATAATATCTA+GGG | 0.544465 | 8.2:+8943147 | None:intergenic |
| TGGAGCATTGATAGGAGAGG+AGG | 0.547265 | 8.2:-8939554 | MS.gene063743:CDS |
| CTACGATAATGTGACAACTA+GGG | 0.550212 | 8.2:+8941745 | None:intergenic |
| ATATGGTGTATACCTGAAGA+AGG | 0.551418 | 8.2:+8944645 | None:intergenic |
| GTTGGTATTCCAGCTGCTGT+GGG | 0.551669 | 8.2:-8938840 | MS.gene063743:CDS |
| GATGATAGCATTTGAGCAGC+TGG | 0.553928 | 8.2:+8942288 | None:intergenic |
| CACTTGGTTAACTGTCATGT+GGG | 0.556353 | 8.2:-8943112 | MS.gene063743:CDS |
| ACTGCCATGGCCCTTACTGT+TGG | 0.561603 | 8.2:-8938858 | MS.gene063743:CDS |
| TGGAATTCAGCTTGATGTGA+TGG | 0.562069 | 8.2:-8942032 | MS.gene063743:CDS |
| AGATGGAAGTCCACCACAGT+AGG | 0.563553 | 8.2:+8940733 | None:intergenic |
| CCCCTCCATGTCTTCGTGGT+AGG | 0.565406 | 8.2:+8943833 | None:intergenic |
| TTCAGTTGGATTAGCAAGAG+AGG | 0.565861 | 8.2:+8942449 | None:intergenic |
| ACAAACAAAATTCAGACAAG+AGG | 0.572985 | 8.2:-8938711 | MS.gene063743:CDS |
| TATAAATCATGCCTTCATAA+CGG | 0.573146 | 8.2:+8939886 | None:intergenic |
| AGACATTCCAAAGCAAAAGC+AGG | 0.573853 | 8.2:+8939987 | None:intergenic |
| CGACGAGGCACATATGCAGA+AGG | 0.575121 | 8.2:-8940777 | MS.gene063743:CDS |
| ATATCTGCTATTCCAACAAG+TGG | 0.581840 | 8.2:+8944727 | None:intergenic |
| ACTAGGTCATACCTATTCCT+GGG | 0.582968 | 8.2:+8941251 | None:intergenic |
| CATCATTTGGATCCAGCCAA+TGG | 0.586441 | 8.2:-8942269 | MS.gene063743:CDS |
| TGGCAGGATTGCGTCCAGCT+CGG | 0.586821 | 8.2:+8940364 | None:intergenic |
| TCTTTCACTTCCTACTGTGG+TGG | 0.587351 | 8.2:-8940743 | MS.gene063743:CDS |
| CTTATCATCTAGCATGGACA+TGG | 0.596716 | 8.2:+8941318 | None:intergenic |
| TATTTCAGCTGGAATCCTGT+AGG | 0.596927 | 8.2:-8940393 | MS.gene063743:intron |
| CAACCTGAAGTATACACTCC+AGG | 0.596974 | 8.2:-8938672 | MS.gene063743:intron |
| AGCTGGAATACCAACAGTAA+GGG | 0.599510 | 8.2:+8938848 | None:intergenic |
| GAAACTAATCAAGCAAGGCA+TGG | 0.601563 | 8.2:-8945302 | MS.gene063743:CDS |
| CTGGAGTGTATACTTCAGGT+TGG | 0.602410 | 8.2:+8938673 | None:intergenic |
| GAGTCAGATTTGCGCATGCG+TGG | 0.604903 | 8.2:+8943530 | None:intergenic |
| AACAGGAAACTAATCAAGCA+AGG | 0.605183 | 8.2:-8945307 | MS.gene063743:intron |
| TGATGTTGCCTGTTTCCGCA+TGG | 0.607057 | 8.2:-8939326 | MS.gene063743:CDS |
| GGATTCCTACCACGAAGACA+TGG | 0.609570 | 8.2:-8943838 | MS.gene063743:CDS |
| TCATCCGACTCTAAAGAATG+AGG | 0.610462 | 8.2:-8939638 | MS.gene063743:CDS |
| AAATTGGAGTGTAATGTTCA+GGG | 0.611393 | 8.2:+8945058 | None:intergenic |
| AAGTCTTTCACTTCCTACTG+TGG | 0.613298 | 8.2:-8940746 | MS.gene063743:CDS |
| TACGATAATGTGACAACTAG+GGG | 0.615232 | 8.2:+8941746 | None:intergenic |
| GAGAGGAGGATATATCGGAA+AGG | 0.615819 | 8.2:-8939540 | MS.gene063743:CDS |
| AAGCACTATGGCATGAAGCA+GGG | 0.617713 | 8.2:+8939350 | None:intergenic |
| GTCTGACAGGTTTCTCTGAG+CGG | 0.621105 | 8.2:-8943202 | MS.gene063743:intron |
| AGATGGAGCATTGATAGGAG+AGG | 0.625287 | 8.2:-8939557 | MS.gene063743:CDS |
| AATCATGCCTTCATAACGGA+GGG | 0.629458 | 8.2:+8939890 | None:intergenic |
| TAAAGTTCATGAAAACGGCA+TGG | 0.629653 | 8.2:-8942376 | MS.gene063743:CDS |
| ATGACAGTTAACCAAGTGGA+AGG | 0.634711 | 8.2:+8943117 | None:intergenic |
| TCCTACCACGAAGACATGGA+GGG | 0.638823 | 8.2:-8943834 | MS.gene063743:CDS |
| CCTGCCACCTACAAATATCA+CGG | 0.645275 | 8.2:-8940348 | MS.gene063743:CDS |
| AAATCATGCCTTCATAACGG+AGG | 0.646151 | 8.2:+8939889 | None:intergenic |
| ATCTGCTTATAGCTTAACAA+CGG | 0.647351 | 8.2:+8944775 | None:intergenic |
| GATATAACTTGTGATATAGG+TGG | 0.647734 | 8.2:-8944709 | MS.gene063743:CDS |
| TGCTTATAGCTTAACAACGG+AGG | 0.649696 | 8.2:+8944778 | None:intergenic |
| GATATTATTGAAGCTGCAGG+AGG | 0.652514 | 8.2:-8943142 | MS.gene063743:CDS |
| AATACCAACAGTAAGGGCCA+TGG | 0.655144 | 8.2:+8938854 | None:intergenic |
| CCTACCACGAAGACATGGAG+GGG | 0.662630 | 8.2:-8943833 | MS.gene063743:CDS |
| ATTGTTCGCGAAGATCCAGA+TGG | 0.664052 | 8.2:-8939574 | MS.gene063743:CDS |
| TTCCTACCACGAAGACATGG+AGG | 0.664890 | 8.2:-8943835 | MS.gene063743:CDS |
| CCACATGACAGTTAACCAAG+TGG | 0.665864 | 8.2:+8943113 | None:intergenic |
| GTGAATCAATTGACGTAGTG+CGG | 0.666266 | 8.2:+8944668 | None:intergenic |
| TCGGAAAGGATATTAACACT+AGG | 0.670943 | 8.2:-8939526 | MS.gene063743:CDS |
| TGATGATCCAGATCACATGA+TGG | 0.673821 | 8.2:-8940813 | MS.gene063743:intron |
| TTCGCCGTGATATTTGTAGG+TGG | 0.679497 | 8.2:+8940344 | None:intergenic |
| GACGAGGCACATATGCAGAA+GGG | 0.682146 | 8.2:-8940776 | MS.gene063743:CDS |
| TGGTATATAATCATATAAGG+AGG | 0.687295 | 8.2:+8943550 | None:intergenic |
| TATGGTGTATACCTGAAGAA+GGG | 0.691493 | 8.2:+8944646 | None:intergenic |
| AGAGCTTGCATAGTCAATGG+AGG | 0.692452 | 8.2:-8943581 | MS.gene063743:CDS |
| CAAGAGCAAATACAAGACAT+CGG | 0.695369 | 8.2:-8943310 | MS.gene063743:intron |
| TGTTGCCTGTTTCCGCATGG+AGG | 0.700266 | 8.2:-8939323 | MS.gene063743:CDS |
| TGTTGTGATAGCTCAAGACA+TGG | 0.703959 | 8.2:-8945249 | MS.gene063743:CDS |
| AGGATAGTCTCTCCTCCATG+CGG | 0.707814 | 8.2:+8939311 | None:intergenic |
| GGCAATGAAGATGATCGACG+AGG | 0.724936 | 8.2:-8940792 | MS.gene063743:CDS |
| ACGATAATGTGACAACTAGG+GGG | 0.726794 | 8.2:+8941747 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 8938045 | 8945506 | 8938045 | ID=MS.gene063743 |
| chr8.2 | mRNA | 8938045 | 8945506 | 8938045 | ID=MS.gene063743.t1;Parent=MS.gene063743 |
| chr8.2 | exon | 8945504 | 8945506 | 8945504 | ID=MS.gene063743.t1.exon1;Parent=MS.gene063743.t1 |
| chr8.2 | CDS | 8945504 | 8945506 | 8945504 | ID=cds.MS.gene063743.t1;Parent=MS.gene063743.t1 |
| chr8.2 | exon | 8945214 | 8945324 | 8945214 | ID=MS.gene063743.t1.exon2;Parent=MS.gene063743.t1 |
| chr8.2 | CDS | 8945214 | 8945324 | 8945214 | ID=cds.MS.gene063743.t1;Parent=MS.gene063743.t1 |
| chr8.2 | exon | 8945022 | 8945097 | 8945022 | ID=MS.gene063743.t1.exon3;Parent=MS.gene063743.t1 |
| chr8.2 | CDS | 8945022 | 8945097 | 8945022 | ID=cds.MS.gene063743.t1;Parent=MS.gene063743.t1 |
| chr8.2 | exon | 8944658 | 8944829 | 8944658 | ID=MS.gene063743.t1.exon4;Parent=MS.gene063743.t1 |
| chr8.2 | CDS | 8944658 | 8944829 | 8944658 | ID=cds.MS.gene063743.t1;Parent=MS.gene063743.t1 |
| chr8.2 | exon | 8943779 | 8943875 | 8943779 | ID=MS.gene063743.t1.exon5;Parent=MS.gene063743.t1 |
| chr8.2 | CDS | 8943779 | 8943875 | 8943779 | ID=cds.MS.gene063743.t1;Parent=MS.gene063743.t1 |
| chr8.2 | exon | 8943527 | 8943693 | 8943527 | ID=MS.gene063743.t1.exon6;Parent=MS.gene063743.t1 |
| chr8.2 | CDS | 8943527 | 8943693 | 8943527 | ID=cds.MS.gene063743.t1;Parent=MS.gene063743.t1 |
| chr8.2 | exon | 8943311 | 8943368 | 8943311 | ID=MS.gene063743.t1.exon7;Parent=MS.gene063743.t1 |
| chr8.2 | CDS | 8943311 | 8943368 | 8943311 | ID=cds.MS.gene063743.t1;Parent=MS.gene063743.t1 |
| chr8.2 | exon | 8943075 | 8943215 | 8943075 | ID=MS.gene063743.t1.exon8;Parent=MS.gene063743.t1 |
| chr8.2 | CDS | 8943075 | 8943215 | 8943075 | ID=cds.MS.gene063743.t1;Parent=MS.gene063743.t1 |
| chr8.2 | exon | 8942182 | 8942520 | 8942182 | ID=MS.gene063743.t1.exon9;Parent=MS.gene063743.t1 |
| chr8.2 | CDS | 8942182 | 8942520 | 8942182 | ID=cds.MS.gene063743.t1;Parent=MS.gene063743.t1 |
| chr8.2 | exon | 8942000 | 8942080 | 8942000 | ID=MS.gene063743.t1.exon10;Parent=MS.gene063743.t1 |
| chr8.2 | CDS | 8942000 | 8942080 | 8942000 | ID=cds.MS.gene063743.t1;Parent=MS.gene063743.t1 |
| chr8.2 | exon | 8941728 | 8941793 | 8941728 | ID=MS.gene063743.t1.exon11;Parent=MS.gene063743.t1 |
| chr8.2 | CDS | 8941728 | 8941793 | 8941728 | ID=cds.MS.gene063743.t1;Parent=MS.gene063743.t1 |
| chr8.2 | exon | 8941263 | 8941380 | 8941263 | ID=MS.gene063743.t1.exon12;Parent=MS.gene063743.t1 |
| chr8.2 | CDS | 8941263 | 8941380 | 8941263 | ID=cds.MS.gene063743.t1;Parent=MS.gene063743.t1 |
| chr8.2 | exon | 8940695 | 8940824 | 8940695 | ID=MS.gene063743.t1.exon13;Parent=MS.gene063743.t1 |
| chr8.2 | CDS | 8940695 | 8940824 | 8940695 | ID=cds.MS.gene063743.t1;Parent=MS.gene063743.t1 |
| chr8.2 | exon | 8940328 | 8940407 | 8940328 | ID=MS.gene063743.t1.exon14;Parent=MS.gene063743.t1 |
| chr8.2 | CDS | 8940328 | 8940407 | 8940328 | ID=cds.MS.gene063743.t1;Parent=MS.gene063743.t1 |
| chr8.2 | exon | 8939898 | 8940056 | 8939898 | ID=MS.gene063743.t1.exon15;Parent=MS.gene063743.t1 |
| chr8.2 | CDS | 8939898 | 8940056 | 8939898 | ID=cds.MS.gene063743.t1;Parent=MS.gene063743.t1 |
| chr8.2 | exon | 8939478 | 8939715 | 8939478 | ID=MS.gene063743.t1.exon16;Parent=MS.gene063743.t1 |
| chr8.2 | CDS | 8939478 | 8939715 | 8939478 | ID=cds.MS.gene063743.t1;Parent=MS.gene063743.t1 |
| chr8.2 | exon | 8939294 | 8939402 | 8939294 | ID=MS.gene063743.t1.exon17;Parent=MS.gene063743.t1 |
| chr8.2 | CDS | 8939294 | 8939402 | 8939294 | ID=cds.MS.gene063743.t1;Parent=MS.gene063743.t1 |
| chr8.2 | exon | 8938833 | 8938994 | 8938833 | ID=MS.gene063743.t1.exon18;Parent=MS.gene063743.t1 |
| chr8.2 | CDS | 8938833 | 8938994 | 8938833 | ID=cds.MS.gene063743.t1;Parent=MS.gene063743.t1 |
| chr8.2 | exon | 8938673 | 8938742 | 8938673 | ID=MS.gene063743.t1.exon19;Parent=MS.gene063743.t1 |
| chr8.2 | CDS | 8938673 | 8938742 | 8938673 | ID=cds.MS.gene063743.t1;Parent=MS.gene063743.t1 |
| chr8.2 | exon | 8938045 | 8938097 | 8938045 | ID=MS.gene063743.t1.exon20;Parent=MS.gene063743.t1 |
| chr8.2 | CDS | 8938045 | 8938097 | 8938045 | ID=cds.MS.gene063743.t1;Parent=MS.gene063743.t1 |
| Gene Sequence |
| Protein sequence |
