Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063747.t1 | XP_003609929.1 | 96.6 | 1029 | 35 | 0 | 1 | 1029 | 3 | 1031 | 0.00E+00 | 1998.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063747.t1 | Q9SMZ4 | 68.9 | 1037 | 310 | 6 | 3 | 1029 | 13 | 1047 | 0.0e+00 | 1436.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063747.t1 | G7JS28 | 96.6 | 1029 | 35 | 0 | 1 | 1029 | 3 | 1031 | 0.0e+00 | 1998.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050800 | MS.gene063747 | 0.810427 | 1.16E-50 | -1.69E-46 |
| MS.gene052922 | MS.gene063747 | 0.845878 | 3.09E-59 | -1.69E-46 |
| MS.gene053175 | MS.gene063747 | 0.828807 | 7.32E-55 | -1.69E-46 |
| MS.gene054549 | MS.gene063747 | 0.821924 | 3.12E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063747.t1 | MTR_4g124470 | 96.599 | 1029 | 35 | 0 | 1 | 1029 | 3 | 1031 | 0.0 | 2072 |
| MS.gene063747.t1 | MTR_4g124470 | 95.849 | 1036 | 36 | 1 | 1 | 1029 | 3 | 1038 | 0.0 | 2063 |
| MS.gene063747.t1 | MTR_4g124470 | 96.417 | 949 | 34 | 0 | 81 | 1029 | 10 | 958 | 0.0 | 1906 |
| MS.gene063747.t1 | MTR_4g124470 | 96.410 | 947 | 34 | 0 | 83 | 1029 | 1 | 947 | 0.0 | 1902 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063747.t1 | AT4G33150 | 69.075 | 1038 | 309 | 6 | 2 | 1029 | 12 | 1047 | 0.0 | 1491 |
| MS.gene063747.t1 | AT4G33150 | 69.075 | 1038 | 309 | 6 | 2 | 1029 | 12 | 1047 | 0.0 | 1491 |
| MS.gene063747.t1 | AT4G33150 | 69.075 | 1038 | 309 | 6 | 2 | 1029 | 12 | 1047 | 0.0 | 1491 |
| MS.gene063747.t1 | AT4G33150 | 64.516 | 465 | 160 | 2 | 568 | 1029 | 3 | 465 | 0.0 | 631 |
Find 225 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACCGCAACTCTTTAATTTA+TGG | 0.062968 | 8.2:+8986867 | MS.gene063747:CDS |
| CAAACTTGCCTGCTCATTTA+AGG | 0.104303 | 8.2:+8983223 | MS.gene063747:CDS |
| AATAGATGTTGATATCATTT+TGG | 0.140848 | 8.2:+8984616 | MS.gene063747:CDS |
| TATCAGAATCTGTGAATAAA+TGG | 0.154234 | 8.2:+8979794 | MS.gene063747:CDS |
| AGAAGGTTGAACAATAATTT+TGG | 0.164479 | 8.2:-8979881 | None:intergenic |
| GACTAGGCTTCGCAATATTT+TGG | 0.165045 | 8.2:+8983150 | MS.gene063747:intron |
| GTCCCAATTTGTCACAAATT+TGG | 0.171779 | 8.2:+8983182 | MS.gene063747:CDS |
| CTTTCTGTGCCTTGTGAGTA+TGG | 0.204473 | 8.2:-8980301 | None:intergenic |
| GAATTGATTGTTGGAGAAAA+TGG | 0.208921 | 8.2:+8980477 | MS.gene063747:CDS |
| TTAATTTATGGAGATTTATA+TGG | 0.210990 | 8.2:+8986879 | MS.gene063747:CDS |
| AAACACTTTCATGGGATCTT+TGG | 0.220013 | 8.2:-8981607 | None:intergenic |
| AAGCCAAATTTGTGACAAAT+TGG | 0.238819 | 8.2:-8983185 | None:intergenic |
| TGTAGTTCACTTAGTTTAGA+TGG | 0.273032 | 8.2:-8981316 | None:intergenic |
| GGGAAAAGATTACTTGCATT+TGG | 0.294277 | 8.2:+8980498 | MS.gene063747:CDS |
| GCACCAGACACATCCGTTAT+TGG | 0.303263 | 8.2:+8981806 | MS.gene063747:CDS |
| AATGGATTGTTGGCATCTTC+AGG | 0.309153 | 8.2:-8986117 | None:intergenic |
| CAATTGATTCACCCTTCTTC+AGG | 0.309166 | 8.2:+8982170 | MS.gene063747:CDS |
| CTTAGTTAATTGCATGTATT+GGG | 0.310022 | 8.2:+8982015 | MS.gene063747:intron |
| TAGATGGATCCACAAAAGTA+TGG | 0.312041 | 8.2:-8981300 | None:intergenic |
| CTGCAGCTTCAATAATATCT+AGG | 0.319514 | 8.2:-8983681 | None:intergenic |
| AACACTTTCATGGGATCTTT+GGG | 0.324739 | 8.2:-8981606 | None:intergenic |
| AGATCATGGCGACACTTTCT+AGG | 0.327865 | 8.2:+8987143 | MS.gene063747:CDS |
| AGAGCTACTTTGCTTGAATT+CGG | 0.328075 | 8.2:+8987921 | MS.gene063747:CDS |
| AAGAAGGCATAAGCTCTATT+TGG | 0.328153 | 8.2:-8980275 | None:intergenic |
| CACTTTGTCAAACACTTTCA+TGG | 0.328950 | 8.2:-8981616 | None:intergenic |
| TACCTGAATTTATATGCTAA+TGG | 0.330123 | 8.2:-8986135 | None:intergenic |
| AGCTGAATTCCAGTTACATT+TGG | 0.335411 | 8.2:-8984784 | None:intergenic |
| GAAAGAAAACATGCCTTTGC+TGG | 0.339421 | 8.2:+8980319 | MS.gene063747:CDS |
| GTCTTTACTGGCTCGGGAAA+TGG | 0.347110 | 8.2:+8980844 | MS.gene063747:CDS |
| TCCTTTCTTGTAGTTTGCTC+TGG | 0.349399 | 8.2:+8981250 | MS.gene063747:intron |
| GATGCTGGTATAACAATTCT+TGG | 0.355805 | 8.2:+8985538 | MS.gene063747:CDS |
| ATACCTGCTCTGCATCCTTC+AGG | 0.358896 | 8.2:-8984649 | None:intergenic |
| GAGCTACTTTGCTTGAATTC+GGG | 0.360095 | 8.2:+8987922 | MS.gene063747:CDS |
| ATTCAAGATTTGATGAGAAA+TGG | 0.360260 | 8.2:+8982073 | MS.gene063747:CDS |
| AGAAGTAAGAGGAAGATGTT+TGG | 0.360331 | 8.2:+8979751 | None:intergenic |
| TATGGAGATTTATATGGAAT+AGG | 0.360466 | 8.2:+8986885 | MS.gene063747:CDS |
| GGCGAAACTTTACATATTGA+TGG | 0.362283 | 8.2:+8986500 | MS.gene063747:CDS |
| TGCAGATGATAAGGCTGTTC+TGG | 0.367690 | 8.2:+8984334 | MS.gene063747:CDS |
| TATGATTATGAATTGATTGT+TGG | 0.372175 | 8.2:+8980468 | MS.gene063747:CDS |
| AAAATTGGAGTGTAATGTTC+AGG | 0.372458 | 8.2:-8981770 | None:intergenic |
| TCTTAGTTAATTGCATGTAT+TGG | 0.375626 | 8.2:+8982014 | MS.gene063747:intron |
| TCCAACAGAATTTGCAAAAG+AGG | 0.376427 | 8.2:+8983049 | MS.gene063747:CDS |
| TCTCCTATCAATGCTCCATC+TGG | 0.384278 | 8.2:-8987268 | None:intergenic |
| GGTATTCTATCTCCACTTCA+TGG | 0.384578 | 8.2:-8987872 | None:intergenic |
| TCACCCTGTGGTCTCATCCT+TGG | 0.386368 | 8.2:+8979967 | MS.gene063747:CDS |
| GAAGGCATTCCAAATGTAAC+TGG | 0.386769 | 8.2:+8984775 | MS.gene063747:CDS |
| TCCAGCTGCTGTGGGAGCTC+TGG | 0.387534 | 8.2:+8987995 | MS.gene063747:CDS |
| GCGTGGTATATAATCATATA+AGG | 0.391117 | 8.2:-8983280 | None:intergenic |
| TCTCTCCTCCATGCGGAAAC+AGG | 0.392544 | 8.2:-8987509 | None:intergenic |
| TCCTTCCTTGGCTGCTGCTA+AGG | 0.392618 | 8.2:+8980750 | MS.gene063747:CDS |
| ATCCATTAGCATATAAATTC+AGG | 0.392846 | 8.2:+8986133 | MS.gene063747:CDS |
| TACTAGGTCATACCTATTCC+TGG | 0.394462 | 8.2:-8985577 | None:intergenic |
| GCAGATATAACTTGTGATAT+AGG | 0.397513 | 8.2:+8982115 | MS.gene063747:CDS |
| AGTTTCGCCGTGATATTTGT+AGG | 0.400233 | 8.2:-8986486 | None:intergenic |
| GCTCAAATGCTATCATCATT+TGG | 0.400718 | 8.2:+8984545 | MS.gene063747:CDS |
| TAAATTAAAGAGTTGCGGTT+TGG | 0.402978 | 8.2:-8986864 | None:intergenic |
| TGATGAATTCTCTTAGTAGA+AGG | 0.407101 | 8.2:-8979898 | None:intergenic |
| GATCCAGATGGAGCATTGAT+AGG | 0.408026 | 8.2:+8987265 | MS.gene063747:CDS |
| TGTAGTTTGCTCTGGTGCTC+AGG | 0.408673 | 8.2:+8981258 | MS.gene063747:intron |
| TTTATATGCTAATGGATTGT+TGG | 0.411001 | 8.2:-8986127 | None:intergenic |
| TCACCTGGAGTGTATACTTC+AGG | 0.415501 | 8.2:-8988158 | None:intergenic |
| GCAACTCAGGGATTGCCATT+GGG | 0.415806 | 8.2:+8980802 | MS.gene063747:CDS |
| AATTGATTGTTGGAGAAAAT+GGG | 0.428975 | 8.2:+8980478 | MS.gene063747:CDS |
| CCGTGATATTTGTAGGTGGC+AGG | 0.430034 | 8.2:-8986479 | None:intergenic |
| ATGATTCAGCTAAAAGACTA+AGG | 0.430434 | 8.2:+8986805 | MS.gene063747:CDS |
| ACCAGAGCTCCCACAGCAGC+TGG | 0.430788 | 8.2:-8987996 | None:intergenic |
| GAATTCGGGAAAACTATTGA+TGG | 0.431573 | 8.2:+8987936 | MS.gene063747:CDS |
| TATAATCATATAAGGAGGTT+AGG | 0.433937 | 8.2:-8983272 | None:intergenic |
| GAAGTAAGAGGAAGATGTTT+GGG | 0.434278 | 8.2:+8979752 | None:intergenic |
| ATTGCATGTATTGGGAGAAA+AGG | 0.438391 | 8.2:+8982023 | MS.gene063747:CDS |
| CATGTCCATGCTAGATGATA+AGG | 0.441776 | 8.2:+8985510 | MS.gene063747:CDS |
| GTAACAGGGTATTTAAGTCT+TGG | 0.442453 | 8.2:+8980685 | MS.gene063747:intron |
| AGATCAGTGCAGATTGTTGA+AGG | 0.443060 | 8.2:+8984757 | MS.gene063747:intron |
| TTCAGACAAGAGGTGTCTTA+AGG | 0.444078 | 8.2:+8988126 | MS.gene063747:CDS |
| AAACATGCCTTTGCTGGATA+AGG | 0.445017 | 8.2:+8980325 | MS.gene063747:CDS |
| ATTGATTTCTTGCGTGGATT+GGG | 0.450552 | 8.2:+8980546 | MS.gene063747:CDS |
| TGATCAATTTCTGATAAATG+AGG | 0.450882 | 8.2:+8983657 | MS.gene063747:CDS |
| CGTGGAACCCTCCGTTATGA+AGG | 0.452301 | 8.2:+8986930 | MS.gene063747:CDS |
| ATGTTTGGGAACGGTGTTGT+TGG | 0.453688 | 8.2:+8979766 | MS.gene063747:CDS |
| GGTGAGATGGGCTTGGACCC+AGG | 0.453772 | 8.2:+8985559 | MS.gene063747:CDS |
| TGTTAGATATGATGCAATAA+CGG | 0.453846 | 8.2:+8982968 | MS.gene063747:intron |
| ATGGGCTTGGACCCAGGAAT+AGG | 0.458978 | 8.2:+8985565 | MS.gene063747:CDS |
| ATCAGAATCTGTGAATAAAT+GGG | 0.459403 | 8.2:+8979795 | MS.gene063747:CDS |
| GATAGGAGAGGAGGATATAT+CGG | 0.461696 | 8.2:+8987282 | MS.gene063747:CDS |
| AGGAGAGCTTGCATAGTCAA+TGG | 0.463364 | 8.2:+8983243 | MS.gene063747:CDS |
| CCAATGGTATAAAACATTGT+TGG | 0.463677 | 8.2:+8984574 | MS.gene063747:CDS |
| ACAGGTTGGTGCAGATGATA+AGG | 0.465036 | 8.2:+8984325 | MS.gene063747:intron |
| AGCCAAATTTGTGACAAATT+GGG | 0.465211 | 8.2:-8983184 | None:intergenic |
| ATGGCGACACTTTCTAGGAT+TGG | 0.465848 | 8.2:+8987148 | MS.gene063747:CDS |
| ATCATACATGTATCCTTCCT+TGG | 0.466001 | 8.2:+8980738 | MS.gene063747:CDS |
| AGATTACTTCATCATGGAAC+TGG | 0.467747 | 8.2:+8979853 | MS.gene063747:CDS |
| GATTGATTTCTTGCGTGGAT+TGG | 0.470829 | 8.2:+8980545 | MS.gene063747:CDS |
| AATTCTTGGTGAGATGGGCT+TGG | 0.470872 | 8.2:+8985552 | MS.gene063747:CDS |
| CAGCTGGAATACCAACAGTA+AGG | 0.471355 | 8.2:-8987980 | None:intergenic |
| TGCAACTCAGGGATTGCCAT+TGG | 0.471975 | 8.2:+8980801 | MS.gene063747:CDS |
| AAAGCAAAAGCAGGAAAGTC+AGG | 0.472612 | 8.2:-8986831 | None:intergenic |
| AAAGCACTATGGCATGAAGC+AGG | 0.474044 | 8.2:-8987478 | None:intergenic |
| TCACAACACAACCATAAACT+TGG | 0.477682 | 8.2:-8981563 | None:intergenic |
| CAACTCAGGGATTGCCATTG+GGG | 0.478672 | 8.2:+8980803 | MS.gene063747:CDS |
| CTCTCCTCATTCTTTAGAGT+CGG | 0.479336 | 8.2:-8987193 | None:intergenic |
| CTCCATAAATTAAAGAGTTG+CGG | 0.481371 | 8.2:-8986869 | None:intergenic |
| GAAGCATCAACTGTCTTTCG+TGG | 0.483593 | 8.2:+8986912 | MS.gene063747:CDS |
| AGTAAAATTTCACTTACGCT+TGG | 0.484189 | 8.2:+8984428 | MS.gene063747:CDS |
| ATAACAATTCTTGGTGAGAT+GGG | 0.485910 | 8.2:+8985547 | MS.gene063747:CDS |
| TATAACAATTCTTGGTGAGA+TGG | 0.488831 | 8.2:+8985546 | MS.gene063747:CDS |
| CATTCCCCTCCATGTCTTCG+TGG | 0.489845 | 8.2:-8982998 | None:intergenic |
| TGCAGCCTTAGCAGCAGCCA+AGG | 0.493775 | 8.2:-8980755 | None:intergenic |
| ACTTTGTCAAACACTTTCAT+GGG | 0.496078 | 8.2:-8981615 | None:intergenic |
| CCGATATCACCTACCAATAA+CGG | 0.497549 | 8.2:-8981819 | None:intergenic |
| ATCCTACTCCAACACAGAAA+AGG | 0.497780 | 8.2:+8987534 | MS.gene063747:CDS |
| TTTCTGTGCCTTGTGAGTAT+GGG | 0.498508 | 8.2:-8980300 | None:intergenic |
| TGTTGGTATTCCAGCTGCTG+TGG | 0.499554 | 8.2:+8987986 | MS.gene063747:CDS |
| CTTGGTAAAGTTCATGAAAA+CGG | 0.501285 | 8.2:+8984446 | MS.gene063747:CDS |
| ACTAAGTGAACTACATAAGA+TGG | 0.503097 | 8.2:+8981324 | MS.gene063747:CDS |
| CTACCAATAACGGATGTGTC+TGG | 0.503459 | 8.2:-8981809 | None:intergenic |
| TGGTGAAGAAATTGCAACTC+AGG | 0.505018 | 8.2:+8980789 | MS.gene063747:CDS |
| TGTTTGGGAACGGTGTTGTT+GGG | 0.505431 | 8.2:+8979767 | MS.gene063747:CDS |
| CAAGCTCTCCTTAAATGAGC+AGG | 0.507376 | 8.2:-8983231 | None:intergenic |
| CCTGTAGGTGCCATCCGAGC+TGG | 0.508824 | 8.2:+8986449 | MS.gene063747:CDS |
| GTACCTGAAGGATGCAGAGC+AGG | 0.509916 | 8.2:+8984646 | MS.gene063747:CDS |
| CCAGCTCGGATGGCACCTAC+AGG | 0.510844 | 8.2:-8986449 | None:intergenic |
| AGGCAACATCAAAAGCACTA+TGG | 0.511973 | 8.2:-8987489 | None:intergenic |
| CCACTTGGTTAACTGTCATG+TGG | 0.512401 | 8.2:+8983714 | MS.gene063747:CDS |
| TTTGGGATCTTTGTACCTGA+AGG | 0.513179 | 8.2:+8984634 | MS.gene063747:CDS |
| TATAGGGTTTAGTGAGATCA+TGG | 0.516919 | 8.2:+8987129 | MS.gene063747:intron |
| CTAGATATTATTGAAGCTGC+AGG | 0.517883 | 8.2:+8983682 | MS.gene063747:CDS |
| CGTAGCAAATGCTTGCATTG+AGG | 0.522620 | 8.2:+8985100 | MS.gene063747:CDS |
| AGGATTGCGTCCAGCTCGGA+TGG | 0.524365 | 8.2:-8986459 | None:intergenic |
| GCCTTAGCAGCAGCCAAGGA+AGG | 0.525409 | 8.2:-8980751 | None:intergenic |
| TGCAGGAGGCTCCTTCCACT+TGG | 0.526358 | 8.2:+8983699 | MS.gene063747:CDS |
| CCGCTGGTTGTTTGATGCCA+AGG | 0.527121 | 8.2:-8979984 | None:intergenic |
| AGATGGATCCACAAAAGTAT+GGG | 0.528191 | 8.2:-8981299 | None:intergenic |
| CACGAAGACATGGAGGGGAA+TGG | 0.528495 | 8.2:+8982999 | MS.gene063747:CDS |
| TCATGAAAACGGCATGGAGA+AGG | 0.528840 | 8.2:+8984457 | MS.gene063747:CDS |
| AGAAATGGATGTCCACTTGT+TGG | 0.530432 | 8.2:+8982088 | MS.gene063747:CDS |
| TTGTTGGCATCTTCAGGAGA+TGG | 0.531880 | 8.2:-8986111 | None:intergenic |
| GCTACGATAATGTGACAACT+AGG | 0.532719 | 8.2:-8985083 | None:intergenic |
| TTTAGCCTTATCATCTAGCA+TGG | 0.533798 | 8.2:-8985515 | None:intergenic |
| GATGATAAGGCTAAAGATGC+TGG | 0.536549 | 8.2:+8985523 | MS.gene063747:CDS |
| GTGTATACTTCAGGTTGGAT+AGG | 0.540931 | 8.2:-8988149 | None:intergenic |
| CTTGTGAGTATGGGAAAAGA+AGG | 0.542708 | 8.2:-8980291 | None:intergenic |
| TGCAGCTTCAATAATATCTA+GGG | 0.544465 | 8.2:-8983680 | None:intergenic |
| TGGAGCATTGATAGGAGAGG+AGG | 0.547265 | 8.2:+8987273 | MS.gene063747:CDS |
| TGTGCTAGATTACTTCATCA+TGG | 0.548301 | 8.2:+8979847 | MS.gene063747:CDS |
| AAGGCTGCAGTCATTTCTGT+TGG | 0.549082 | 8.2:+8980769 | MS.gene063747:CDS |
| CTACGATAATGTGACAACTA+GGG | 0.550212 | 8.2:-8985082 | None:intergenic |
| ATATGGTGTATACCTGAAGA+AGG | 0.551418 | 8.2:-8982182 | None:intergenic |
| GTTGGTATTCCAGCTGCTGT+GGG | 0.551669 | 8.2:+8987987 | MS.gene063747:CDS |
| GATGATAGCATTTGAGCAGC+TGG | 0.553928 | 8.2:-8984539 | None:intergenic |
| GATGATCCAAGTGACAGAAA+AGG | 0.555873 | 8.2:-8980718 | None:intergenic |
| CACTTGGTTAACTGTCATGT+GGG | 0.556353 | 8.2:+8983715 | MS.gene063747:CDS |
| GATGCCAAGGATGAGACCAC+AGG | 0.558412 | 8.2:-8979971 | None:intergenic |
| ACTGCCATGGCCCTTACTGT+TGG | 0.561603 | 8.2:+8987969 | MS.gene063747:CDS |
| TGGAATTCAGCTTGATGTGA+TGG | 0.562069 | 8.2:+8984795 | MS.gene063747:CDS |
| AGATGGAAGTCCACCACAGT+AGG | 0.563553 | 8.2:-8986094 | None:intergenic |
| CCCCTCCATGTCTTCGTGGT+AGG | 0.565406 | 8.2:-8982994 | None:intergenic |
| TTCAGTTGGATTAGCAAGAG+AGG | 0.565861 | 8.2:-8984378 | None:intergenic |
| ACAAACAAAATTCAGACAAG+AGG | 0.572985 | 8.2:+8988116 | MS.gene063747:CDS |
| TATAAATCATGCCTTCATAA+CGG | 0.573146 | 8.2:-8986941 | None:intergenic |
| AGACATTCCAAAGCAAAAGC+AGG | 0.573853 | 8.2:-8986840 | None:intergenic |
| CGACGAGGCACATATGCAGA+AGG | 0.575121 | 8.2:+8986050 | MS.gene063747:CDS |
| GATGCTCTCTATGAAGAAGT+TGG | 0.580939 | 8.2:+8979922 | MS.gene063747:CDS |
| ATATCTGCTATTCCAACAAG+TGG | 0.581840 | 8.2:-8982100 | None:intergenic |
| ACTAGGTCATACCTATTCCT+GGG | 0.582968 | 8.2:-8985576 | None:intergenic |
| CATCATTTGGATCCAGCCAA+TGG | 0.586441 | 8.2:+8984558 | MS.gene063747:CDS |
| TGGCAGGATTGCGTCCAGCT+CGG | 0.586821 | 8.2:-8986463 | None:intergenic |
| TCTTTCACTTCCTACTGTGG+TGG | 0.587351 | 8.2:+8986084 | MS.gene063747:CDS |
| GGTGAAGAAATTGCAACTCA+GGG | 0.588076 | 8.2:+8980790 | MS.gene063747:CDS |
| GCACAGTGTGATGGAGTCAA+AGG | 0.595862 | 8.2:-8979829 | None:intergenic |
| CTTATCATCTAGCATGGACA+TGG | 0.596716 | 8.2:-8985509 | None:intergenic |
| TATTTCAGCTGGAATCCTGT+AGG | 0.596927 | 8.2:+8986434 | MS.gene063747:intron |
| CAACCTGAAGTATACACTCC+AGG | 0.596974 | 8.2:+8988155 | MS.gene063747:CDS |
| AGCTGGAATACCAACAGTAA+GGG | 0.599510 | 8.2:-8987979 | None:intergenic |
| GAAACTAATCAAGCAAGGCA+TGG | 0.601563 | 8.2:+8981525 | MS.gene063747:CDS |
| CTGGAGTGTATACTTCAGGT+TGG | 0.602410 | 8.2:-8988154 | None:intergenic |
| GAGTCAGATTTGCGCATGCG+TGG | 0.604903 | 8.2:-8983297 | None:intergenic |
| AACAGGAAACTAATCAAGCA+AGG | 0.605183 | 8.2:+8981520 | MS.gene063747:intron |
| GGAATGATTGATTTCTTGCG+TGG | 0.606806 | 8.2:+8980540 | MS.gene063747:CDS |
| TGATGTTGCCTGTTTCCGCA+TGG | 0.607057 | 8.2:+8987501 | MS.gene063747:CDS |
| GGATTCCTACCACGAAGACA+TGG | 0.609570 | 8.2:+8982989 | MS.gene063747:CDS |
| TCATCCGACTCTAAAGAATG+AGG | 0.610462 | 8.2:+8987189 | MS.gene063747:CDS |
| AGTAATCTAGCACAGTGTGA+TGG | 0.610805 | 8.2:-8979838 | None:intergenic |
| AAATTGGAGTGTAATGTTCA+GGG | 0.611393 | 8.2:-8981769 | None:intergenic |
| AAGAGGAAGATGTTTGGGAA+CGG | 0.612656 | 8.2:+8979757 | None:intergenic |
| AAGTCTTTCACTTCCTACTG+TGG | 0.613298 | 8.2:+8986081 | MS.gene063747:CDS |
| TACGATAATGTGACAACTAG+GGG | 0.615232 | 8.2:-8985081 | None:intergenic |
| GAGAGGAGGATATATCGGAA+AGG | 0.615819 | 8.2:+8987287 | MS.gene063747:CDS |
| AAGCACTATGGCATGAAGCA+GGG | 0.617713 | 8.2:-8987477 | None:intergenic |
| GTCTGACAGGTTTCTCTGAG+CGG | 0.621105 | 8.2:+8983625 | MS.gene063747:intron |
| AGATGGAGCATTGATAGGAG+AGG | 0.625287 | 8.2:+8987270 | MS.gene063747:CDS |
| AATCATGCCTTCATAACGGA+GGG | 0.629458 | 8.2:-8986937 | None:intergenic |
| TAAAGTTCATGAAAACGGCA+TGG | 0.629653 | 8.2:+8984451 | MS.gene063747:CDS |
| ATGACAGTTAACCAAGTGGA+AGG | 0.634711 | 8.2:-8983710 | None:intergenic |
| TCCTACCACGAAGACATGGA+GGG | 0.638823 | 8.2:+8982993 | MS.gene063747:CDS |
| CCTGCCACCTACAAATATCA+CGG | 0.645275 | 8.2:+8986479 | MS.gene063747:CDS |
| AAATCATGCCTTCATAACGG+AGG | 0.646151 | 8.2:-8986938 | None:intergenic |
| ATCTGCTTATAGCTTAACAA+CGG | 0.647351 | 8.2:-8982052 | None:intergenic |
| GATATAACTTGTGATATAGG+TGG | 0.647734 | 8.2:+8982118 | MS.gene063747:CDS |
| ACACGCACCTTATCCAGCAA+AGG | 0.648996 | 8.2:-8980332 | None:intergenic |
| TGCTTATAGCTTAACAACGG+AGG | 0.649696 | 8.2:-8982049 | None:intergenic |
| GATATTATTGAAGCTGCAGG+AGG | 0.652514 | 8.2:+8983685 | MS.gene063747:CDS |
| AATACCAACAGTAAGGGCCA+TGG | 0.655144 | 8.2:-8987973 | None:intergenic |
| TCACAAGACTTGTCACCCTG+TGG | 0.655585 | 8.2:+8979955 | MS.gene063747:CDS |
| ATGCCAAGGATGAGACCACA+GGG | 0.658340 | 8.2:-8979970 | None:intergenic |
| CCTACCACGAAGACATGGAG+GGG | 0.662630 | 8.2:+8982994 | MS.gene063747:CDS |
| ATTGTTCGCGAAGATCCAGA+TGG | 0.664052 | 8.2:+8987253 | MS.gene063747:CDS |
| TTCCTACCACGAAGACATGG+AGG | 0.664890 | 8.2:+8982992 | MS.gene063747:CDS |
| ACGAGAGGACAAATCCCCAA+TGG | 0.665124 | 8.2:-8980817 | None:intergenic |
| CCACATGACAGTTAACCAAG+TGG | 0.665864 | 8.2:-8983714 | None:intergenic |
| GTGAATCAATTGACGTAGTG+CGG | 0.666266 | 8.2:-8982159 | None:intergenic |
| GATGGATCCACAAAAGTATG+GGG | 0.670075 | 8.2:-8981298 | None:intergenic |
| TCGGAAAGGATATTAACACT+AGG | 0.670943 | 8.2:+8987301 | MS.gene063747:CDS |
| TGATGATCCAGATCACATGA+TGG | 0.673821 | 8.2:+8986014 | MS.gene063747:intron |
| TTCGCCGTGATATTTGTAGG+TGG | 0.679497 | 8.2:-8986483 | None:intergenic |
| GACGAGGCACATATGCAGAA+GGG | 0.682146 | 8.2:+8986051 | MS.gene063747:CDS |
| TGGTATATAATCATATAAGG+AGG | 0.687295 | 8.2:-8983277 | None:intergenic |
| TATGGTGTATACCTGAAGAA+GGG | 0.691493 | 8.2:-8982181 | None:intergenic |
| AGAGCTTGCATAGTCAATGG+AGG | 0.692452 | 8.2:+8983246 | MS.gene063747:CDS |
| CAAGAGCAAATACAAGACAT+CGG | 0.695369 | 8.2:+8983517 | MS.gene063747:CDS |
| TGTTGCCTGTTTCCGCATGG+AGG | 0.700266 | 8.2:+8987504 | MS.gene063747:CDS |
| TGTTGTGATAGCTCAAGACA+TGG | 0.703959 | 8.2:+8981578 | MS.gene063747:CDS |
| CCTTGGCATCAAACAACCAG+CGG | 0.704811 | 8.2:+8979984 | MS.gene063747:CDS |
| AGGATAGTCTCTCCTCCATG+CGG | 0.707814 | 8.2:-8987516 | None:intergenic |
| GGCAATGAAGATGATCGACG+AGG | 0.724936 | 8.2:+8986035 | MS.gene063747:CDS |
| ACGATAATGTGACAACTAGG+GGG | 0.726794 | 8.2:-8985080 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 8979766 | 8988176 | 8979766 | ID=MS.gene063747 |
| chr8.2 | mRNA | 8979766 | 8988176 | 8979766 | ID=MS.gene063747.t1;Parent=MS.gene063747 |
| chr8.2 | exon | 8979766 | 8980005 | 8979766 | ID=MS.gene063747.t1.exon1;Parent=MS.gene063747.t1 |
| chr8.2 | CDS | 8979766 | 8980005 | 8979766 | ID=cds.MS.gene063747.t1;Parent=MS.gene063747.t1 |
| chr8.2 | exon | 8980260 | 8980346 | 8980260 | ID=MS.gene063747.t1.exon2;Parent=MS.gene063747.t1 |
| chr8.2 | CDS | 8980260 | 8980346 | 8980260 | ID=cds.MS.gene063747.t1;Parent=MS.gene063747.t1 |
| chr8.2 | exon | 8980444 | 8980573 | 8980444 | ID=MS.gene063747.t1.exon3;Parent=MS.gene063747.t1 |
| chr8.2 | CDS | 8980444 | 8980573 | 8980444 | ID=cds.MS.gene063747.t1;Parent=MS.gene063747.t1 |
| chr8.2 | exon | 8980692 | 8980865 | 8980692 | ID=MS.gene063747.t1.exon4;Parent=MS.gene063747.t1 |
| chr8.2 | CDS | 8980692 | 8980865 | 8980692 | ID=cds.MS.gene063747.t1;Parent=MS.gene063747.t1 |
| chr8.2 | exon | 8981263 | 8981345 | 8981263 | ID=MS.gene063747.t1.exon5;Parent=MS.gene063747.t1 |
| chr8.2 | CDS | 8981263 | 8981345 | 8981263 | ID=cds.MS.gene063747.t1;Parent=MS.gene063747.t1 |
| chr8.2 | exon | 8981525 | 8981635 | 8981525 | ID=MS.gene063747.t1.exon6;Parent=MS.gene063747.t1 |
| chr8.2 | CDS | 8981525 | 8981635 | 8981525 | ID=cds.MS.gene063747.t1;Parent=MS.gene063747.t1 |
| chr8.2 | exon | 8981752 | 8981827 | 8981752 | ID=MS.gene063747.t1.exon7;Parent=MS.gene063747.t1 |
| chr8.2 | CDS | 8981752 | 8981827 | 8981752 | ID=cds.MS.gene063747.t1;Parent=MS.gene063747.t1 |
| chr8.2 | exon | 8982020 | 8982191 | 8982020 | ID=MS.gene063747.t1.exon8;Parent=MS.gene063747.t1 |
| chr8.2 | CDS | 8982020 | 8982191 | 8982020 | ID=cds.MS.gene063747.t1;Parent=MS.gene063747.t1 |
| chr8.2 | exon | 8982974 | 8983070 | 8982974 | ID=MS.gene063747.t1.exon9;Parent=MS.gene063747.t1 |
| chr8.2 | CDS | 8982974 | 8983070 | 8982974 | ID=cds.MS.gene063747.t1;Parent=MS.gene063747.t1 |
| chr8.2 | exon | 8983156 | 8983322 | 8983156 | ID=MS.gene063747.t1.exon10;Parent=MS.gene063747.t1 |
| chr8.2 | CDS | 8983156 | 8983322 | 8983156 | ID=cds.MS.gene063747.t1;Parent=MS.gene063747.t1 |
| chr8.2 | exon | 8983481 | 8983538 | 8983481 | ID=MS.gene063747.t1.exon11;Parent=MS.gene063747.t1 |
| chr8.2 | CDS | 8983481 | 8983538 | 8983481 | ID=cds.MS.gene063747.t1;Parent=MS.gene063747.t1 |
| chr8.2 | exon | 8983634 | 8983774 | 8983634 | ID=MS.gene063747.t1.exon12;Parent=MS.gene063747.t1 |
| chr8.2 | CDS | 8983634 | 8983774 | 8983634 | ID=cds.MS.gene063747.t1;Parent=MS.gene063747.t1 |
| chr8.2 | exon | 8984329 | 8984667 | 8984329 | ID=MS.gene063747.t1.exon13;Parent=MS.gene063747.t1 |
| chr8.2 | CDS | 8984329 | 8984667 | 8984329 | ID=cds.MS.gene063747.t1;Parent=MS.gene063747.t1 |
| chr8.2 | exon | 8984769 | 8984849 | 8984769 | ID=MS.gene063747.t1.exon14;Parent=MS.gene063747.t1 |
| chr8.2 | CDS | 8984769 | 8984849 | 8984769 | ID=cds.MS.gene063747.t1;Parent=MS.gene063747.t1 |
| chr8.2 | exon | 8985056 | 8985121 | 8985056 | ID=MS.gene063747.t1.exon15;Parent=MS.gene063747.t1 |
| chr8.2 | CDS | 8985056 | 8985121 | 8985056 | ID=cds.MS.gene063747.t1;Parent=MS.gene063747.t1 |
| chr8.2 | exon | 8985469 | 8985586 | 8985469 | ID=MS.gene063747.t1.exon16;Parent=MS.gene063747.t1 |
| chr8.2 | CDS | 8985469 | 8985586 | 8985469 | ID=cds.MS.gene063747.t1;Parent=MS.gene063747.t1 |
| chr8.2 | exon | 8986025 | 8986154 | 8986025 | ID=MS.gene063747.t1.exon17;Parent=MS.gene063747.t1 |
| chr8.2 | CDS | 8986025 | 8986154 | 8986025 | ID=cds.MS.gene063747.t1;Parent=MS.gene063747.t1 |
| chr8.2 | exon | 8986442 | 8986521 | 8986442 | ID=MS.gene063747.t1.exon18;Parent=MS.gene063747.t1 |
| chr8.2 | CDS | 8986442 | 8986521 | 8986442 | ID=cds.MS.gene063747.t1;Parent=MS.gene063747.t1 |
| chr8.2 | exon | 8986793 | 8986951 | 8986793 | ID=MS.gene063747.t1.exon19;Parent=MS.gene063747.t1 |
| chr8.2 | CDS | 8986793 | 8986951 | 8986793 | ID=cds.MS.gene063747.t1;Parent=MS.gene063747.t1 |
| chr8.2 | exon | 8987134 | 8987371 | 8987134 | ID=MS.gene063747.t1.exon20;Parent=MS.gene063747.t1 |
| chr8.2 | CDS | 8987134 | 8987371 | 8987134 | ID=cds.MS.gene063747.t1;Parent=MS.gene063747.t1 |
| chr8.2 | exon | 8987447 | 8987555 | 8987447 | ID=MS.gene063747.t1.exon21;Parent=MS.gene063747.t1 |
| chr8.2 | CDS | 8987447 | 8987555 | 8987447 | ID=cds.MS.gene063747.t1;Parent=MS.gene063747.t1 |
| chr8.2 | exon | 8987855 | 8988016 | 8987855 | ID=MS.gene063747.t1.exon22;Parent=MS.gene063747.t1 |
| chr8.2 | CDS | 8987855 | 8988016 | 8987855 | ID=cds.MS.gene063747.t1;Parent=MS.gene063747.t1 |
| chr8.2 | exon | 8988107 | 8988176 | 8988107 | ID=MS.gene063747.t1.exon23;Parent=MS.gene063747.t1 |
| chr8.2 | CDS | 8988107 | 8988176 | 8988107 | ID=cds.MS.gene063747.t1;Parent=MS.gene063747.t1 |
| Gene Sequence |
| Protein sequence |
