Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063764.t1 | XP_013458374.1 | 94.8 | 229 | 11 | 1 | 1 | 229 | 1 | 228 | 2.70E-82 | 315.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063764.t1 | Q94A32 | 72.9 | 107 | 29 | 0 | 123 | 229 | 134 | 240 | 1.3e-37 | 157.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063764.t1 | B7FFA9 | 94.8 | 229 | 11 | 1 | 1 | 229 | 1 | 228 | 2.0e-82 | 315.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050762 | MS.gene063764 | -0.812494 | 4.12E-51 | -1.69E-46 |
| MS.gene050763 | MS.gene063764 | -0.812517 | 4.07E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063764.t1 | MTR_4g123593 | 93.886 | 229 | 13 | 1 | 1 | 229 | 1 | 228 | 7.76e-121 | 343 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063764.t1 | AT3G43520 | 69.748 | 119 | 35 | 1 | 111 | 229 | 123 | 240 | 4.17e-51 | 166 |
| MS.gene063764.t1 | AT2G26240 | 63.810 | 105 | 38 | 0 | 124 | 228 | 4 | 108 | 3.63e-38 | 129 |
Find 76 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGGTCAAATTGACTGGTTT+TGG | 0.265563 | 8.2:+9362804 | None:intergenic |
| GAAATCAGGGAAGGTCTTTC+CGG | 0.282767 | 8.2:-9360436 | MS.gene063764:CDS |
| GGAGTGTGGGATCGGGTTGT+AGG | 0.296999 | 8.2:+9362925 | None:intergenic |
| GGTTCTCGTTTCAAGAAATC+AGG | 0.336113 | 8.2:-9360450 | MS.gene063764:CDS |
| AAAGGAAACGGAGACGATTT+CGG | 0.340053 | 8.2:-9362739 | MS.gene063764:CDS |
| TTGACAGCGGGTGGTGTAAT+GGG | 0.345679 | 8.2:-9361435 | MS.gene063764:intron |
| TGATGCAAGAACAGGTCTTC+CGG | 0.347788 | 8.2:+9361329 | None:intergenic |
| TTTGACAGCGGGTGGTGTAA+TGG | 0.350276 | 8.2:-9361436 | MS.gene063764:intron |
| TGGCAGCCAGAAGTCGCTTT+TGG | 0.351977 | 8.2:-9361400 | MS.gene063764:CDS |
| AAGGATCTGACGGTGATAAA+AGG | 0.360224 | 8.2:-9362654 | MS.gene063764:CDS |
| GGTGGTGGTGGTGAAGGAGG+AGG | 0.373824 | 8.2:-9362706 | MS.gene063764:CDS |
| GGTGGTGAAGGAGGAGGCGG+AGG | 0.375033 | 8.2:-9362700 | MS.gene063764:CDS |
| TGCTGCACTTCTTGTGGTGA+TGG | 0.380439 | 8.2:-9360472 | MS.gene063764:CDS |
| CCCCAGCCAAAAGCGACTTC+TGG | 0.386183 | 8.2:+9361394 | None:intergenic |
| GCCGCCGGTAATGTCTAAAT+CGG | 0.388850 | 8.2:+9362774 | None:intergenic |
| GGTGGTGGTGAAGGAGGAGG+CGG | 0.392210 | 8.2:-9362703 | MS.gene063764:CDS |
| CCGCCGGTAATGTCTAAATC+GGG | 0.413389 | 8.2:+9362775 | None:intergenic |
| TAGTGGTGGGAGTGTGGGAT+CGG | 0.421797 | 8.2:+9362917 | None:intergenic |
| GACGATTTCGGCGGAGGAGG+TGG | 0.426057 | 8.2:-9362727 | MS.gene063764:CDS |
| CTTGCATCATCTGTGGGCCT+TGG | 0.426584 | 8.2:-9361315 | MS.gene063764:intron |
| GATGCAAGAACAGGTCTTCC+GGG | 0.430490 | 8.2:+9361330 | None:intergenic |
| GAGAAATAGTGGTGGGAGTG+TGG | 0.440353 | 8.2:+9362911 | None:intergenic |
| GCTGCACTTCTTGTGGTGAT+GGG | 0.443502 | 8.2:-9360471 | MS.gene063764:CDS |
| AGCGAGTTGAGAATGTGAAT+TGG | 0.445867 | 8.2:+9362843 | None:intergenic |
| GGCGGAGGAGGTGGTGGTGG+TGG | 0.449465 | 8.2:-9362718 | MS.gene063764:CDS |
| AGTGGTGGGAGTGTGGGATC+GGG | 0.454693 | 8.2:+9362918 | None:intergenic |
| TTCGGCGGAGGAGGTGGTGG+TGG | 0.461763 | 8.2:-9362721 | MS.gene063764:CDS |
| GATTTCGGCGGAGGAGGTGG+TGG | 0.468875 | 8.2:-9362724 | MS.gene063764:CDS |
| GACAAGTAAGGGAAAGAAGC+AGG | 0.472035 | 8.2:+9362871 | None:intergenic |
| GGCACTTAGGTCAAATTGAC+TGG | 0.474158 | 8.2:+9362798 | None:intergenic |
| ACCTGTTCTTGCATCATCTG+TGG | 0.483230 | 8.2:-9361322 | MS.gene063764:CDS |
| AACGGAGACGATTTCGGCGG+AGG | 0.486679 | 8.2:-9362733 | MS.gene063764:CDS |
| AGAAGCAGGAGAAGCAAGGA+AGG | 0.489884 | 8.2:+9362885 | None:intergenic |
| CCCACAGATGATGCAAGAAC+AGG | 0.490656 | 8.2:+9361321 | None:intergenic |
| CTAGGTTATGCTATTCTCGT+TGG | 0.491350 | 8.2:-9362598 | MS.gene063764:CDS |
| AAGGAAGGAGCGAGAAATAG+TGG | 0.498256 | 8.2:+9362900 | None:intergenic |
| AACAGGTCTTCCGGGTAGCT+CGG | 0.505808 | 8.2:+9361338 | None:intergenic |
| TTTGATATCACCGCCGCCGC+CGG | 0.506217 | 8.2:+9362759 | None:intergenic |
| TTAGACATTACCGGCGGCGG+CGG | 0.514783 | 8.2:-9362769 | MS.gene063764:CDS |
| GGTTATGCTATTCTCGTTGG+AGG | 0.515433 | 8.2:-9362595 | MS.gene063764:intron |
| CCTGTTCTTGCATCATCTGT+GGG | 0.521720 | 8.2:-9361321 | MS.gene063764:CDS |
| GGAGACGATTTCGGCGGAGG+AGG | 0.526381 | 8.2:-9362730 | MS.gene063764:CDS |
| GAGTGTGGGATCGGGTTGTA+GGG | 0.536706 | 8.2:+9362926 | None:intergenic |
| GGCGGTGATATCAAAGGAAA+CGG | 0.540755 | 8.2:-9362751 | MS.gene063764:CDS |
| GATAGTAACAAAGGCGAGGA+AGG | 0.548487 | 8.2:-9362673 | MS.gene063764:CDS |
| CATATCTGCTGCACTTCTTG+TGG | 0.550309 | 8.2:-9360478 | MS.gene063764:CDS |
| AAGGAGCGAGAAATAGTGGT+GGG | 0.557007 | 8.2:+9362904 | None:intergenic |
| TCAGGGAAGGTCTTTCCGGC+AGG | 0.561022 | 8.2:-9360432 | MS.gene063764:CDS |
| CTTGTGTCGTTCATAATGAC+CGG | 0.562716 | 8.2:-9360399 | MS.gene063764:CDS |
| ACAAGTGACACAACACCTGC+CGG | 0.564042 | 8.2:+9360417 | None:intergenic |
| AGAAATAGTGGTGGGAGTGT+GGG | 0.564262 | 8.2:+9362912 | None:intergenic |
| GGTTGTAGGGCGAAGAGAGA+GGG | 0.564448 | 8.2:+9362939 | None:intergenic |
| ATGACCGGTGGTTACTTGCA+TGG | 0.564829 | 8.2:-9360384 | MS.gene063764:CDS |
| GTAGGGCGAAGAGAGAGGGA+AGG | 0.571612 | 8.2:+9362943 | None:intergenic |
| TGACGGTGATAAAAGGAAGA+TGG | 0.578241 | 8.2:-9362647 | MS.gene063764:CDS |
| ATGTCGCAGAAATTAACTCT+AGG | 0.581649 | 8.2:-9362616 | MS.gene063764:CDS |
| GAATTGGAAAGAGACAAGTA+AGG | 0.589380 | 8.2:+9362859 | None:intergenic |
| GATTTAGACATTACCGGCGG+CGG | 0.591983 | 8.2:-9362772 | MS.gene063764:CDS |
| CGCCGGTAATGTCTAAATCG+GGG | 0.604362 | 8.2:+9362776 | None:intergenic |
| GGAAAGAAGCAGGAGAAGCA+AGG | 0.608774 | 8.2:+9362881 | None:intergenic |
| AATTGGAAAGAGACAAGTAA+GGG | 0.611539 | 8.2:+9362860 | None:intergenic |
| GGCGGCGGCGGTGATATCAA+AGG | 0.624581 | 8.2:-9362757 | MS.gene063764:CDS |
| GTTCTCGTTTCAAGAAATCA+GGG | 0.628947 | 8.2:-9360449 | MS.gene063764:CDS |
| TCGTTTCAAGAAATCAGGGA+AGG | 0.630412 | 8.2:-9360445 | MS.gene063764:CDS |
| GCCGGTAATGTCTAAATCGG+GGG | 0.634119 | 8.2:+9362777 | None:intergenic |
| GTAATGGGCTTTCTGAAGAG+TGG | 0.639725 | 8.2:-9361420 | MS.gene063764:CDS |
| AATTCCATGCAAGTAACCAC+CGG | 0.644415 | 8.2:+9360380 | None:intergenic |
| AAAGGCGAGGAAGGATCTGA+CGG | 0.645896 | 8.2:-9362664 | MS.gene063764:CDS |
| AGACGATAGTAACAAAGGCG+AGG | 0.650186 | 8.2:-9362677 | MS.gene063764:CDS |
| GAAGGAGCGAGAAATAGTGG+TGG | 0.655482 | 8.2:+9362903 | None:intergenic |
| CCCGATTTAGACATTACCGG+CGG | 0.658939 | 8.2:-9362775 | MS.gene063764:CDS |
| GGAGGAGACGATAGTAACAA+AGG | 0.659434 | 8.2:-9362682 | MS.gene063764:CDS |
| GGGTTGTAGGGCGAAGAGAG+AGG | 0.659984 | 8.2:+9362938 | None:intergenic |
| GTGTCGTTCATAATGACCGG+TGG | 0.667012 | 8.2:-9360396 | MS.gene063764:CDS |
| GTCAATGGCAGAAACTGCAG+CGG | 0.675091 | 8.2:-9362992 | None:intergenic |
| GGAAACGGAGACGATTTCGG+CGG | 0.728758 | 8.2:-9362736 | MS.gene063764:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAAAAAAAATTATTTAACA+TGG | - | chr8.2:9362215-9362234 | MS.gene063764:intron | 10.0% |
| !!! | TTTATTTTGGAATATTATTT+TGG | - | chr8.2:9362676-9362695 | MS.gene063764:CDS | 10.0% |
| !! | AAAAAATTATTTAACATGGA+TGG | - | chr8.2:9362219-9362238 | MS.gene063764:intron | 15.0% |
| !! | CTACATAATGATATTTATTT+GGG | - | chr8.2:9361890-9361909 | MS.gene063764:intron | 15.0% |
| !! | TAATATTCCAAAATAAATTC+AGG | + | chr8.2:9362673-9362692 | None:intergenic | 15.0% |
| !! | TCTACATAATGATATTTATT+TGG | - | chr8.2:9361889-9361908 | MS.gene063764:intron | 15.0% |
| !! | TTTCTTATGTTAGTTATTTA+AGG | - | chr8.2:9360961-9360980 | MS.gene063764:intron | 15.0% |
| !! | ATAAACTGGAATAAATTGTA+TGG | - | chr8.2:9361569-9361588 | MS.gene063764:intron | 20.0% |
| !! | ATAGATAAGTGTTTATAAGT+GGG | + | chr8.2:9361411-9361430 | None:intergenic | 20.0% |
| !! | GATATTTGACAACATTAAAT+TGG | - | chr8.2:9361695-9361714 | MS.gene063764:intron | 20.0% |
| !!! | AGTTTTTTATCCATACTTTA+AGG | - | chr8.2:9362407-9362426 | MS.gene063764:intron | 20.0% |
| !!! | TTCTAAAAAACCTTAAAGTA+TGG | + | chr8.2:9362420-9362439 | None:intergenic | 20.0% |
| ! | AATTCCTCCATATAATATTG+CGG | - | chr8.2:9361161-9361180 | MS.gene063764:intron | 25.0% |
| ! | ATTATCGTCGTTATCAAATA+TGG | + | chr8.2:9362609-9362628 | None:intergenic | 25.0% |
| ! | CATAGATAAGTGTTTATAAG+TGG | + | chr8.2:9361412-9361431 | None:intergenic | 25.0% |
| ! | GAAATAAAATCTCACAAAAC+CGG | - | chr8.2:9361365-9361384 | MS.gene063764:CDS | 25.0% |
| ! | TAGATAAGTGTTTATAAGTG+GGG | + | chr8.2:9361410-9361429 | None:intergenic | 25.0% |
| ! | TAGTTATAGATCAGTTTCTA+GGG | + | chr8.2:9360827-9360846 | None:intergenic | 25.0% |
| ! | TCTTAAAGTCTTAAGAACAA+AGG | - | chr8.2:9362172-9362191 | MS.gene063764:intron | 25.0% |
| ! | TTAGTTATAGATCAGTTTCT+AGG | + | chr8.2:9360828-9360847 | None:intergenic | 25.0% |
| !! | GAATAAACTCTTTTACTGTT+GGG | - | chr8.2:9362119-9362138 | MS.gene063764:intron | 25.0% |
| !! | TGAATAAACTCTTTTACTGT+TGG | - | chr8.2:9362118-9362137 | MS.gene063764:intron | 25.0% |
| !!! | GTTTTGAATTTACCTTCAAT+TGG | - | chr8.2:9360861-9360880 | MS.gene063764:intron | 25.0% |
| AAACATTAACACATGAGAGA+AGG | + | chr8.2:9362829-9362848 | None:intergenic | 30.0% | |
| AATATGAAGTGTAGAGTTCA+GGG | + | chr8.2:9362373-9362392 | None:intergenic | 30.0% | |
| AATTGGAAAGAGACAAGTAA+GGG | + | chr8.2:9360493-9360512 | None:intergenic | 30.0% | |
| AATTGTATGGAAATTCCATG+TGG | - | chr8.2:9361582-9361601 | MS.gene063764:intron | 30.0% | |
| AGATAAGTGTTTATAAGTGG+GGG | + | chr8.2:9361409-9361428 | None:intergenic | 30.0% | |
| AGTTAGAATGAAGAACATGT+TGG | - | chr8.2:9360887-9360906 | MS.gene063764:intron | 30.0% | |
| ATTGTATGGAAATTCCATGT+GGG | - | chr8.2:9361583-9361602 | MS.gene063764:intron | 30.0% | |
| GCAAACTCTTTATGAGTTTA+CGG | - | chr8.2:9362705-9362724 | MS.gene063764:CDS | 30.0% | |
| GGAATTTCATATGTATCAGA+AGG | - | chr8.2:9362193-9362212 | MS.gene063764:intron | 30.0% | |
| GTAAAAGAGTTTATTCAGAC+AGG | + | chr8.2:9362115-9362134 | None:intergenic | 30.0% | |
| TAATATGAAGTGTAGAGTTC+AGG | + | chr8.2:9362374-9362393 | None:intergenic | 30.0% | |
| TATGTTGCAAATTGTTCAAC+TGG | - | chr8.2:9362470-9362489 | MS.gene063764:intron | 30.0% | |
| ! | GTGAATTGTAAAGCATTCTT+TGG | - | chr8.2:9362343-9362362 | MS.gene063764:intron | 30.0% |
| !! | ATTTATTTGGGTTTTGACAG+CGG | - | chr8.2:9361902-9361921 | MS.gene063764:intron | 30.0% |
| !! | GATCATTTTTCCTGATGTAT+AGG | - | chr8.2:9362849-9362868 | MS.gene063764:CDS | 30.0% |
| !! | GTTTCTTTGCTTTGAAGTTT+AGG | - | chr8.2:9362572-9362591 | MS.gene063764:intron | 30.0% |
| !!! | AACATGTTTTGTTTGTGTTG+TGG | - | chr8.2:9361535-9361554 | MS.gene063764:intron | 30.0% |
| !!! | ACATGTTTTGTTTGTGTTGT+GGG | - | chr8.2:9361536-9361555 | MS.gene063764:intron | 30.0% |
| ACAATGATGCATCATTCCAT+TGG | - | chr8.2:9362504-9362523 | MS.gene063764:intron | 35.0% | |
| ACATAGCCATGTCTAAATTC+TGG | - | chr8.2:9362307-9362326 | MS.gene063764:intron | 35.0% | |
| AGACTCTTTAACAGATAGTG+AGG | - | chr8.2:9361451-9361470 | MS.gene063764:intron | 35.0% | |
| ATATGAAGTGTAGAGTTCAG+GGG | + | chr8.2:9362372-9362391 | None:intergenic | 35.0% | |
| ATGTCGCAGAAATTAACTCT+AGG | - | chr8.2:9360734-9360753 | MS.gene063764:intron | 35.0% | |
| ATTCTAACTCAGCCAATTGA+AGG | + | chr8.2:9360876-9360895 | None:intergenic | 35.0% | |
| CATAATTCGTTTGATGCCTT+TGG | + | chr8.2:9362454-9362473 | None:intergenic | 35.0% | |
| GAATTGGAAAGAGACAAGTA+AGG | + | chr8.2:9360494-9360513 | None:intergenic | 35.0% | |
| GAGAAGACTGATACAACTAT+TGG | + | chr8.2:9361125-9361144 | None:intergenic | 35.0% | |
| GATGTCAAATATCTTTGTGG+AGG | - | chr8.2:9361626-9361645 | MS.gene063764:intron | 35.0% | |
| GCAAATTGTTCAACTGGTTA+TGG | - | chr8.2:9362476-9362495 | MS.gene063764:intron | 35.0% | |
| GTTCTCGTTTCAAGAAATCA+GGG | - | chr8.2:9362901-9362920 | MS.gene063764:CDS | 35.0% | |
| TAGAACCTACCATTTACCAA+AGG | - | chr8.2:9362435-9362454 | MS.gene063764:intron | 35.0% | |
| TCCCCACTGTTCAAAATTTA+TGG | + | chr8.2:9361220-9361239 | None:intergenic | 35.0% | |
| TGGGGGAAATCAAAATAAAC+TGG | - | chr8.2:9361555-9361574 | MS.gene063764:intron | 35.0% | |
| TGTATCAGTCTTCTCAATAG+TGG | - | chr8.2:9361130-9361149 | MS.gene063764:intron | 35.0% | |
| ! | ATCAATTCTAGTTGCTCACA+AGG | + | chr8.2:9362775-9362794 | None:intergenic | 35.0% |
| ! | CTCGCTTCCTGAATTTATTT+TGG | - | chr8.2:9362663-9362682 | MS.gene063764:CDS | 35.0% |
| ! | GCCATAAATTTTGAACAGTG+GGG | - | chr8.2:9361216-9361235 | MS.gene063764:intron | 35.0% |
| ! | GGCCATAAATTTTGAACAGT+GGG | - | chr8.2:9361215-9361234 | MS.gene063764:intron | 35.0% |
| !! | TTTATTTGGGTTTTGACAGC+GGG | - | chr8.2:9361903-9361922 | MS.gene063764:intron | 35.0% |
| !! | TTTTTCGATTCCATGAAACG+AGG | - | chr8.2:9361284-9361303 | MS.gene063764:intron | 35.0% |
| !!! | ATGTTTTGTTTGTGTTGTGG+GGG | - | chr8.2:9361538-9361557 | MS.gene063764:intron | 35.0% |
| !!! | CATGTTTTGTTTGTGTTGTG+GGG | - | chr8.2:9361537-9361556 | MS.gene063764:intron | 35.0% |
| !!! | TAGGTCAAATTGACTGGTTT+TGG | + | chr8.2:9360549-9360568 | None:intergenic | 35.0% |
| AAAGGAAACGGAGACGATTT+CGG | - | chr8.2:9360611-9360630 | MS.gene063764:intron | 40.0% | |
| AAGGATCTGACGGTGATAAA+AGG | - | chr8.2:9360696-9360715 | MS.gene063764:intron | 40.0% | |
| AATTCCATGCAAGTAACCAC+CGG | + | chr8.2:9362973-9362992 | None:intergenic | 40.0% | |
| ACCATTGCACGAAATTTGTC+TGG | - | chr8.2:9361240-9361259 | MS.gene063764:intron | 40.0% | |
| AGAAAGAGATGATCGTAGGT+GGG | - | chr8.2:9361338-9361357 | MS.gene063764:CDS | 40.0% | |
| AGAGAGAAAGAGATGATCGT+AGG | - | chr8.2:9361334-9361353 | MS.gene063764:CDS | 40.0% | |
| AGAGCACAATTGTGTACCAA+TGG | + | chr8.2:9362523-9362542 | None:intergenic | 40.0% | |
| AGCAGATATGCCTATACATC+AGG | + | chr8.2:9362862-9362881 | None:intergenic | 40.0% | |
| AGTGCCGCAATATTATATGG+AGG | + | chr8.2:9361168-9361187 | None:intergenic | 40.0% | |
| ATTGCACGAAATTTGTCTGG+AGG | - | chr8.2:9361243-9361262 | MS.gene063764:intron | 40.0% | |
| CAACCTCCAGAATTTAGACA+TGG | + | chr8.2:9362316-9362335 | None:intergenic | 40.0% | |
| CGTTTGATGCCTTTGGTAAA+TGG | + | chr8.2:9362447-9362466 | None:intergenic | 40.0% | |
| CTAGGTTATGCTATTCTCGT+TGG | - | chr8.2:9360752-9360771 | MS.gene063764:intron | 40.0% | |
| CTTTAACAGATAGTGAGGCA+GGG | - | chr8.2:9361456-9361475 | MS.gene063764:intron | 40.0% | |
| GAGCTAGAAAAATTCCACAC+TGG | + | chr8.2:9362646-9362665 | None:intergenic | 40.0% | |
| GGGGATGTCAAATATCTTTG+TGG | - | chr8.2:9361623-9361642 | MS.gene063764:intron | 40.0% | |
| GGTTCTCGTTTCAAGAAATC+AGG | - | chr8.2:9362900-9362919 | MS.gene063764:CDS | 40.0% | |
| TAGCCATGTCTAAATTCTGG+AGG | - | chr8.2:9362310-9362329 | MS.gene063764:intron | 40.0% | |
| TCAAATATCTTTGTGGAGGC+AGG | - | chr8.2:9361630-9361649 | MS.gene063764:intron | 40.0% | |
| TCCAGACAAATTTCGTGCAA+TGG | + | chr8.2:9361244-9361263 | None:intergenic | 40.0% | |
| TCGTTTCAAGAAATCAGGGA+AGG | - | chr8.2:9362905-9362924 | MS.gene063764:CDS | 40.0% | |
| TCTGTTAAAGAGTCTCACCT+CGG | + | chr8.2:9361446-9361465 | None:intergenic | 40.0% | |
| TCTTTAACAGATAGTGAGGC+AGG | - | chr8.2:9361455-9361474 | MS.gene063764:intron | 40.0% | |
| TGACGGTGATAAAAGGAAGA+TGG | - | chr8.2:9360703-9360722 | MS.gene063764:intron | 40.0% | |
| TGATGCCTTTGGTAAATGGT+AGG | + | chr8.2:9362443-9362462 | None:intergenic | 40.0% | |
| TGGTACACAATTGTGCTCTT+TGG | - | chr8.2:9362524-9362543 | MS.gene063764:intron | 40.0% | |
| TTGCACGAAATTTGTCTGGA+GGG | - | chr8.2:9361244-9361263 | MS.gene063764:intron | 40.0% | |
| ! | AGCGAGTTGAGAATGTGAAT+TGG | + | chr8.2:9360510-9360529 | None:intergenic | 40.0% |
| ! | CTTGTGTCGTTCATAATGAC+CGG | - | chr8.2:9362951-9362970 | MS.gene063764:CDS | 40.0% |
| ! | GGGCCATAAATTTTGAACAG+TGG | - | chr8.2:9361214-9361233 | MS.gene063764:intron | 40.0% |
| !! | TATGTTTTTACCGAGCTACC+CGG | - | chr8.2:9362002-9362021 | MS.gene063764:intron | 40.0% |
| AAGGAAGGAGCGAGAAATAG+TGG | + | chr8.2:9360453-9360472 | None:intergenic | 45.0% | |
| AAGGAGCGAGAAATAGTGGT+GGG | + | chr8.2:9360449-9360468 | None:intergenic | 45.0% | |
| AATTTGTCTGGAGGGAGAGT+TGG | - | chr8.2:9361252-9361271 | MS.gene063764:intron | 45.0% | |
| ACCATACTTGTCTACCCACA+TGG | + | chr8.2:9361600-9361619 | None:intergenic | 45.0% | |
| ACCTGTTCTTGCATCATCTG+TGG | - | chr8.2:9362028-9362047 | MS.gene063764:intron | 45.0% | |
| AGACGATAGTAACAAAGGCG+AGG | - | chr8.2:9360673-9360692 | MS.gene063764:intron | 45.0% | |
| CACTGCCATCCTTCACTAAT+TGG | - | chr8.2:9361184-9361203 | MS.gene063764:intron | 45.0% | |
| CATATCTGCTGCACTTCTTG+TGG | - | chr8.2:9362872-9362891 | MS.gene063764:CDS | 45.0% | |
| CCTGTTCTTGCATCATCTGT+GGG | - | chr8.2:9362029-9362048 | MS.gene063764:intron | 45.0% | |
| CGATTCCATGAAACGAGGAA+GGG | - | chr8.2:9361289-9361308 | MS.gene063764:intron | 45.0% | |
| GAAAACCCTTCCTCGTTTCA+TGG | + | chr8.2:9361297-9361316 | None:intergenic | 45.0% | |
| GAAATCAGGGAAGGTCTTTC+CGG | - | chr8.2:9362914-9362933 | MS.gene063764:CDS | 45.0% | |
| GACAAGTAAGGGAAAGAAGC+AGG | + | chr8.2:9360482-9360501 | None:intergenic | 45.0% | |
| GAGAAAGAGATGATCGTAGG+TGG | - | chr8.2:9361337-9361356 | MS.gene063764:CDS | 45.0% | |
| GATAGTAACAAAGGCGAGGA+AGG | - | chr8.2:9360677-9360696 | MS.gene063764:intron | 45.0% | |
| GCAATATACACCTCACATGC+CGG | + | chr8.2:9361387-9361406 | None:intergenic | 45.0% | |
| GGAGGAGACGATAGTAACAA+AGG | - | chr8.2:9360668-9360687 | MS.gene063764:intron | 45.0% | |
| GGCACTTAGGTCAAATTGAC+TGG | + | chr8.2:9360555-9360574 | None:intergenic | 45.0% | |
| GGCAGTGCCGCAATATTATA+TGG | + | chr8.2:9361171-9361190 | None:intergenic | 45.0% | |
| GGCGGTGATATCAAAGGAAA+CGG | - | chr8.2:9360599-9360618 | MS.gene063764:intron | 45.0% | |
| GGTTATGCTATTCTCGTTGG+AGG | - | chr8.2:9360755-9360774 | MS.gene063764:intron | 45.0% | |
| GTGGGTAGACAAGTATGGTA+GGG | - | chr8.2:9361601-9361620 | MS.gene063764:intron | 45.0% | |
| TCAAATATCTGCCACCACAG+TGG | + | chr8.2:9361684-9361703 | None:intergenic | 45.0% | |
| TCCATGTGGGTAGACAAGTA+TGG | - | chr8.2:9361596-9361615 | MS.gene063764:intron | 45.0% | |
| TCGATTCCATGAAACGAGGA+AGG | - | chr8.2:9361288-9361307 | MS.gene063764:intron | 45.0% | |
| TCTATGTCATCTCTCAACCG+AGG | - | chr8.2:9361426-9361445 | MS.gene063764:CDS | 45.0% | |
| TGATGCAAGAACAGGTCTTC+CGG | + | chr8.2:9362024-9362043 | None:intergenic | 45.0% | |
| TGCCATCCTTCACTAATTGG+CGG | - | chr8.2:9361187-9361206 | MS.gene063764:intron | 45.0% | |
| TGGCTATGTTTCAGCCTTAG+CGG | + | chr8.2:9362296-9362315 | None:intergenic | 45.0% | |
| TGGGTAGACAAGTATGGTAG+GGG | - | chr8.2:9361602-9361621 | MS.gene063764:intron | 45.0% | |
| TGTGGGTAGACAAGTATGGT+AGG | - | chr8.2:9361600-9361619 | MS.gene063764:intron | 45.0% | |
| ! | AGAAATAGTGGTGGGAGTGT+GGG | + | chr8.2:9360441-9360460 | None:intergenic | 45.0% |
| ! | TTTAGCACTGAAGTCCAGTG+TGG | - | chr8.2:9362629-9362648 | MS.gene063764:CDS | 45.0% |
| !! | GTAATGGGCTTTCTGAAGAG+TGG | - | chr8.2:9361930-9361949 | MS.gene063764:intron | 45.0% |
| AAAGGCGAGGAAGGATCTGA+CGG | - | chr8.2:9360686-9360705 | MS.gene063764:intron | 50.0% | |
| AATATCTGCCACCACAGTGG+TGG | + | chr8.2:9361681-9361700 | None:intergenic | 50.0% | |
| ACAAGTGACACAACACCTGC+CGG | + | chr8.2:9362936-9362955 | None:intergenic | 50.0% | |
| AGAAGCAGGAGAAGCAAGGA+AGG | + | chr8.2:9360468-9360487 | None:intergenic | 50.0% | |
| AGCCAGACACAAGGTTGTGT+GGG | + | chr8.2:9361658-9361677 | None:intergenic | 50.0% | |
| AGCTCAGCAGTGACTTACCA+AGG | + | chr8.2:9362055-9362074 | None:intergenic | 50.0% | |
| ATGACCGGTGGTTACTTGCA+TGG | - | chr8.2:9362966-9362985 | MS.gene063764:CDS | 50.0% | |
| CACCGCCAATTAGTGAAGGA+TGG | + | chr8.2:9361192-9361211 | None:intergenic | 50.0% | |
| CCCACAGATGATGCAAGAAC+AGG | + | chr8.2:9362032-9362051 | None:intergenic | 50.0% | |
| CCCGATTTAGACATTACCGG+CGG | - | chr8.2:9360575-9360594 | MS.gene063764:intron | 50.0% | |
| CCGCCGGTAATGTCTAAATC+GGG | + | chr8.2:9360578-9360597 | None:intergenic | 50.0% | |
| CGCCGGTAATGTCTAAATCG+GGG | + | chr8.2:9360577-9360596 | None:intergenic | 50.0% | |
| CTTCACTAATTGGCGGTGCA+GGG | - | chr8.2:9361194-9361213 | MS.gene063764:intron | 50.0% | |
| GAAGGAGCGAGAAATAGTGG+TGG | + | chr8.2:9360450-9360469 | None:intergenic | 50.0% | |
| GATGCAAGAACAGGTCTTCC+GGG | + | chr8.2:9362023-9362042 | None:intergenic | 50.0% | |
| GATTTAGACATTACCGGCGG+CGG | - | chr8.2:9360578-9360597 | MS.gene063764:intron | 50.0% | |
| GCCCCCGATTTAGACATTAC+CGG | - | chr8.2:9360572-9360591 | MS.gene063764:intron | 50.0% | |
| GCCGCCGGTAATGTCTAAAT+CGG | + | chr8.2:9360579-9360598 | None:intergenic | 50.0% | |
| GCCGGTAATGTCTAAATCGG+GGG | + | chr8.2:9360576-9360595 | None:intergenic | 50.0% | |
| GCTGCACTTCTTGTGGTGAT+GGG | - | chr8.2:9362879-9362898 | MS.gene063764:CDS | 50.0% | |
| GGAAAGAAGCAGGAGAAGCA+AGG | + | chr8.2:9360472-9360491 | None:intergenic | 50.0% | |
| GGCTATGTTTCAGCCTTAGC+GGG | + | chr8.2:9362295-9362314 | None:intergenic | 50.0% | |
| GGGTAGACAAGTATGGTAGG+GGG | - | chr8.2:9361603-9361622 | MS.gene063764:intron | 50.0% | |
| GGTAGACAAGTATGGTAGGG+GGG | - | chr8.2:9361604-9361623 | MS.gene063764:intron | 50.0% | |
| TCTCACAAAACCGGCATGTG+AGG | - | chr8.2:9361374-9361393 | MS.gene063764:CDS | 50.0% | |
| TCTTGAGTTTCTGCCCGCTA+AGG | - | chr8.2:9362279-9362298 | MS.gene063764:intron | 50.0% | |
| TGCTGCACTTCTTGTGGTGA+TGG | - | chr8.2:9362878-9362897 | MS.gene063764:CDS | 50.0% | |
| TTGACAGCGGGTGGTGTAAT+GGG | - | chr8.2:9361915-9361934 | MS.gene063764:intron | 50.0% | |
| TTTGACAGCGGGTGGTGTAA+TGG | - | chr8.2:9361914-9361933 | MS.gene063764:intron | 50.0% | |
| ! | GAGAAATAGTGGTGGGAGTG+TGG | + | chr8.2:9360442-9360461 | None:intergenic | 50.0% |
| ! | GCAGAAACTGCAGCGGTTTT+CGG | - | chr8.2:9360365-9360384 | MS.gene063764:CDS | 50.0% |
| ! | GTGTCGTTCATAATGACCGG+TGG | - | chr8.2:9362954-9362973 | MS.gene063764:CDS | 50.0% |
| !! | ATTTGGGTTTTGACAGCGGG+TGG | - | chr8.2:9361906-9361925 | MS.gene063764:intron | 50.0% |
| !! | TGTCTAAATCGGGGGCACTT+AGG | + | chr8.2:9360568-9360587 | None:intergenic | 50.0% |
| AACAGGTCTTCCGGGTAGCT+CGG | + | chr8.2:9362015-9362034 | None:intergenic | 55.0% | |
| AGCCCACACAACCTTGTGTC+TGG | - | chr8.2:9361653-9361672 | MS.gene063764:intron | 55.0% | |
| CCTGCACCGCCAATTAGTGA+AGG | + | chr8.2:9361196-9361215 | None:intergenic | 55.0% | |
| CCTTCACTAATTGGCGGTGC+AGG | - | chr8.2:9361193-9361212 | MS.gene063764:intron | 55.0% | |
| CTTGCATCATCTGTGGGCCT+TGG | - | chr8.2:9362035-9362054 | MS.gene063764:intron | 55.0% | |
| GAGCCAGACACAAGGTTGTG+TGG | + | chr8.2:9361659-9361678 | None:intergenic | 55.0% | |
| GGAAACGGAGACGATTTCGG+CGG | - | chr8.2:9360614-9360633 | MS.gene063764:intron | 55.0% | |
| GGTTGTAGGGCGAAGAGAGA+GGG | + | chr8.2:9360414-9360433 | None:intergenic | 55.0% | |
| ! | GAGTGTGGGATCGGGTTGTA+GGG | + | chr8.2:9360427-9360446 | None:intergenic | 55.0% |
| ! | TAGTGGTGGGAGTGTGGGAT+CGG | + | chr8.2:9360436-9360455 | None:intergenic | 55.0% |
| !! | TGGCAGCCAGAAGTCGCTTT+TGG | - | chr8.2:9361950-9361969 | MS.gene063764:intron | 55.0% |
| !!! | AGCCAGAAGTCGCTTTTGGC+TGG | - | chr8.2:9361954-9361973 | MS.gene063764:intron | 55.0% |
| !!! | CAGAAGTCGCTTTTGGCTGG+GGG | - | chr8.2:9361957-9361976 | MS.gene063764:intron | 55.0% |
| !!! | CCAGAAGTCGCTTTTGGCTG+GGG | - | chr8.2:9361956-9361975 | MS.gene063764:intron | 55.0% |
| !!! | GCCAGAAGTCGCTTTTGGCT+GGG | - | chr8.2:9361955-9361974 | MS.gene063764:intron | 55.0% |
| AACGGAGACGATTTCGGCGG+AGG | - | chr8.2:9360617-9360636 | MS.gene063764:intron | 60.0% | |
| CCCCAGCCAAAAGCGACTTC+TGG | + | chr8.2:9361959-9361978 | None:intergenic | 60.0% | |
| GGGTTGTAGGGCGAAGAGAG+AGG | + | chr8.2:9360415-9360434 | None:intergenic | 60.0% | |
| GTAGGGCGAAGAGAGAGGGA+AGG | + | chr8.2:9360410-9360429 | None:intergenic | 60.0% | |
| TCAGGGAAGGTCTTTCCGGC+AGG | - | chr8.2:9362918-9362937 | MS.gene063764:CDS | 60.0% | |
| TTAGACATTACCGGCGGCGG+CGG | - | chr8.2:9360581-9360600 | MS.gene063764:intron | 60.0% | |
| TTTGATATCACCGCCGCCGC+CGG | + | chr8.2:9360594-9360613 | None:intergenic | 60.0% | |
| ! | AGTGGTGGGAGTGTGGGATC+GGG | + | chr8.2:9360435-9360454 | None:intergenic | 60.0% |
| ! | CAGTGGTGGAGCCAGACACA+AGG | + | chr8.2:9361667-9361686 | None:intergenic | 60.0% |
| ! | GGAGTGTGGGATCGGGTTGT+AGG | + | chr8.2:9360428-9360447 | None:intergenic | 60.0% |
| ! | TGTGTCTGGCTCCACCACTG+TGG | - | chr8.2:9361667-9361686 | MS.gene063764:intron | 60.0% |
| !! | GTCTGGAGGGAGAGTTGGTG+TGG | - | chr8.2:9361257-9361276 | MS.gene063764:intron | 60.0% |
| GACGATTTCGGCGGAGGAGG+TGG | - | chr8.2:9360623-9360642 | MS.gene063764:intron | 65.0% | |
| GATTTCGGCGGAGGAGGTGG+TGG | - | chr8.2:9360626-9360645 | MS.gene063764:intron | 65.0% | |
| GGAGACGATTTCGGCGGAGG+AGG | - | chr8.2:9360620-9360639 | MS.gene063764:intron | 65.0% | |
| GGCGGCGGCGGTGATATCAA+AGG | - | chr8.2:9360593-9360612 | MS.gene063764:intron | 65.0% | |
| ! | GGTGGTGGTGAAGGAGGAGG+CGG | - | chr8.2:9360647-9360666 | MS.gene063764:intron | 65.0% |
| ! | GTCTGGCTCCACCACTGTGG+TGG | - | chr8.2:9361670-9361689 | MS.gene063764:intron | 65.0% |
| !! | GGAGGTGGTGGTGGTGGTGA+AGG | - | chr8.2:9360638-9360657 | MS.gene063764:intron | 65.0% |
| !! | GGTGGTGGTGGTGAAGGAGG+AGG | - | chr8.2:9360644-9360663 | MS.gene063764:intron | 65.0% |
| !! | GGTGGTGGTGGTGGTGAAGG+AGG | - | chr8.2:9360641-9360660 | MS.gene063764:intron | 65.0% |
| GGTGGTGAAGGAGGAGGCGG+AGG | - | chr8.2:9360650-9360669 | MS.gene063764:intron | 70.0% | |
| ! | TTCGGCGGAGGAGGTGGTGG+TGG | - | chr8.2:9360629-9360648 | MS.gene063764:intron | 70.0% |
| !! | GGCGGAGGAGGTGGTGGTGG+TGG | - | chr8.2:9360632-9360651 | MS.gene063764:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 9360362 | 9363010 | 9360362 | ID=MS.gene063764 |
| chr8.2 | mRNA | 9360362 | 9363010 | 9360362 | ID=MS.gene063764.t1;Parent=MS.gene063764 |
| chr8.2 | exon | 9362596 | 9363010 | 9362596 | ID=MS.gene063764.t1.exon1;Parent=MS.gene063764.t1 |
| chr8.2 | CDS | 9362596 | 9363010 | 9362596 | ID=cds.MS.gene063764.t1;Parent=MS.gene063764.t1 |
| chr8.2 | exon | 9361316 | 9361450 | 9361316 | ID=MS.gene063764.t1.exon2;Parent=MS.gene063764.t1 |
| chr8.2 | CDS | 9361316 | 9361450 | 9361316 | ID=cds.MS.gene063764.t1;Parent=MS.gene063764.t1 |
| chr8.2 | exon | 9360362 | 9360501 | 9360362 | ID=MS.gene063764.t1.exon3;Parent=MS.gene063764.t1 |
| chr8.2 | CDS | 9360362 | 9360501 | 9360362 | ID=cds.MS.gene063764.t1;Parent=MS.gene063764.t1 |
| Gene Sequence |
| Protein sequence |
