AlfalfaGEDB | MS.gene46997

M. sativa cultivar XinJiangDaYe / MS.gene46997

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515 GO:0008270 GO:0043167 GO:0043169 GO:0046872 GO:0046914
PFAM: PF01535.23 PF12854.10 PF13041.9 PF14432.9 PF20431.1

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene46997.t1	XP_013459241.1	96.7	724	22	1	1	722	1	724	0.00E+00	1362.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene46997.t1	Q9M2Y7	61.0	715	274	3	11	722	9	721	1.3e-235	817.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene46997.t1	A0A072UUG6	96.7	724	22	1	1	722	1	724	0.0e+00	1362.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049441	MS.gene46997	0.829657	4.55E-55	-1.69E-46
MS.gene049824	MS.gene46997	0.822521	2.27E-53	-1.69E-46
MS.gene049825	MS.gene46997	0.838711	2.44E-57	-1.69E-46
MS.gene049873	MS.gene46997	0.828155	1.05E-54	-1.69E-46
MS.gene051700	MS.gene46997	0.836575	8.63E-57	-1.69E-46
MS.gene052582	MS.gene46997	0.813144	2.97E-51	-1.69E-46
MS.gene052584	MS.gene46997	0.823636	1.24E-53	-1.69E-46
MS.gene053226	MS.gene46997	0.810067	1.39E-50	-1.69E-46
MS.gene05365	MS.gene46997	0.808468	3.05E-50	-1.69E-46
MS.gene054967	MS.gene46997	0.823764	1.16E-53	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene015337	MS.gene46997	PPI
MS.gene054966	MS.gene46997	PPI
MS.gene46997	MS.gene40034	PPI
MS.gene46997	MS.gene09679	PPI
MS.gene46997	MS.gene038510	PPI
MS.gene46997	MS.gene79567	PPI
MS.gene46997	MS.gene009064	PPI
MS.gene46997	MS.gene61060	PPI
MS.gene46997	MS.gene059634	PPI
MS.gene46997	MS.gene013301	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene46997.t1	MTR_3g434800	97.099	724	19	1	1	722	1	724	0.0	1472
MS.gene46997.t1	MTR_8g065730	37.838	740	421	5	16	722	15	748	1.23e-174	518
MS.gene46997.t1	MTR_8g069550	37.838	740	421	6	16	722	24	757	1.33e-173	516
MS.gene46997.t1	MTR_1g103840	37.931	783	404	13	11	722	11	782	5.96e-173	515
MS.gene46997.t1	MTR_2g086150	40.185	647	373	7	79	722	232	867	8.35e-167	502
MS.gene46997.t1	MTR_2g086150	28.976	459	311	8	93	548	145	591	1.93e-51	192
MS.gene46997.t1	MTR_2g086150	27.479	484	326	13	68	543	21	487	4.75e-47	179
MS.gene46997.t1	MTR_2g086150	27.778	342	237	6	212	551	62	395	3.64e-34	140
MS.gene46997.t1	MTR_3g105370	40.432	648	371	7	80	722	336	973	1.55e-161	491
MS.gene46997.t1	MTR_3g105370	24.521	522	341	11	30	535	102	586	1.96e-38	154

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene46997.t1	AT3G49710	61.165	721	275	3	5	722	3	721	0.0	911
MS.gene46997.t1	AT1G68930	36.461	746	430	9	13	722	6	743	1.37e-163	489
MS.gene46997.t1	AT1G68930	26.250	480	344	7	1	476	130	603	1.74e-41	162
MS.gene46997.t1	AT1G68930	36.842	722	419	7	32	722	2	717	1.65e-162	486
MS.gene46997.t1	AT1G68930	26.250	480	344	7	1	476	104	577	1.43e-41	162
MS.gene46997.t1	AT2G22070	37.325	785	409	11	10	722	13	786	6.36e-162	487
MS.gene46997.t1	AT3G02010	39.634	656	385	7	70	722	178	825	1.06e-159	482
MS.gene46997.t1	AT3G02010	30.713	547	359	13	10	546	15	551	3.65e-65	231
MS.gene46997.t1	AT3G02010	23.054	334	216	7	13	339	354	653	1.70e-16	84.3
MS.gene46997.t1	AT4G33170	40.093	646	375	5	80	722	354	990	7.94e-159	485

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Find 191 sgRNAs with CRISPR-Local

Find 223 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGCTGATGCGTGAACG+AGG	0.626871	3.1:-31149731	MS.gene46997:CDS
AAACTTATATCAGCCATTTC+TGG	0.298177	3.1:-31149377	MS.gene46997:CDS
AAAGAACCAAATCCGGTCTA+GGG	0.534720	3.1:+31150533	None:intergenic
AAAGGCACTGAGGTTGTTTG+GGG	0.550813	3.1:-31150770	MS.gene46997:CDS
AACACGGTTACATGGGATAT+CGG	0.458382	3.1:+31150324	None:intergenic
AACAGCTGGCGGGCAAGGTT+CGG	0.446804	3.1:+31151171	None:intergenic
AAGAACTCTCATGTTGGGAG+TGG	0.460685	3.1:-31150619	MS.gene46997:CDS
AAGAGAAAGAAAGAAGGTTA+TGG	0.427658	3.1:-31149511	MS.gene46997:CDS
AAGAGGCTGCAACAGTCAAA+AGG	0.547684	3.1:-31149748	MS.gene46997:CDS
AAGCCCAACATCCTCAACAC+AGG	0.680838	3.1:+31150993	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACTTATATCAGCCATTTC+TGG	-	chr3.1:31151365-31151384	MS.gene46997:CDS	30.0%
AAGAGAAAGAAAGAAGGTTA+TGG	-	chr3.1:31151231-31151250	MS.gene46997:CDS	30.0%
AGGTTCTTAACAACAAGTAT+TGG	+	chr3.1:31151314-31151333	None:intergenic	30.0%
ATAAGAAACAATATCCGGTT+CGG	+	chr3.1:31149608-31149627	None:intergenic	30.0%
GTATGTAGCAGATATAAGAT+TGG	-	chr3.1:31151175-31151194	MS.gene46997:CDS	30.0%
GTTAAGAACCTAAGAATTTG+TGG	-	chr3.1:31151323-31151342	MS.gene46997:CDS	30.0%
TAATGAAATTGAAGCAAGCA+GGG	-	chr3.1:31151153-31151172	MS.gene46997:CDS	30.0%
TGGATATGATTGTTATGCAT+CGG	-	chr3.1:31149804-31149823	MS.gene46997:CDS	30.0%
TTAATGAAATTGAAGCAAGC+AGG	-	chr3.1:31151152-31151171	MS.gene46997:CDS	30.0%
TTCATAAGAACTCTCATGTT+GGG	-	chr3.1:31150118-31150137	MS.gene46997:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.1	gene	31149298	31151466	31149298	ID=MS.gene46997
chr3.1	mRNA	31149298	31151466	31149298	ID=MS.gene46997.t1;Parent=MS.gene46997
chr3.1	exon	31149298	31151466	31149298	ID=MS.gene46997.t1.exon1;Parent=MS.gene46997.t1
chr3.1	CDS	31149298	31151466	31149298	ID=cds.MS.gene46997.t1;Parent=MS.gene46997.t1

Gene Sequence

>MS.gene46997

ATGAACCAATTCCAATGCACACTTCATCTTCAAACCTTTCGAACCCTTCTCAAACAATGCATAACCCAAAAAGATTTTCTAACTGGAAAAACCCTCCACGCTTTCTACATCAAATCCTTCATTCCACACTCAACTTACCTCTCCAACCATTTCACACTTCTTTACTCAAAATTTGGCACATTTTCCAATGCTTTAACCGCTTTTCGCTTCACCGGATACCCTAATGTTTTTTCCTATAACACCATTATACATGCTTGTGCGAAACATAACTTACCGAACCTTGCCCGCCAGCTGTTTGATGAAATTCCCGAACCGGATATTGTTTCTTATAATACCCTGATCGCGGTCCACGCTCGTAGGGGAGAGTGTGGGCAGGCGGTGAGTGTGTTTAAGGAAGTTAGAGAGGTAGGGTTGGGGCTTGATGGGTTTACGTTGTCTGGCGTGATTAGTGCCTGTGTTGAGGATGTTGGGCTTGTTAGGCAATTGCATTGTTTTGCGTTGTTGTGTGGATATGATTGTTATGCATCGGTGTGTAATGCGGTTCTTGCTTGTTACGGTAGGTTGGGAAGGTTGAACGAGGCGTGGAGGGTTTTTAGAGAAATGGGGGAGGGTTGTAGGGACATGGTTTCGTGGAATGCGATGATTGTGGCGTGTGGACAACATCGGGAAGGGGCAAAGGCACTGAGGTTGTTTGGGGAGATGGAGAGGATGGGATTGGAGGTTGACATGTTTACGATGGCTAGTGTTTTGACTGCGTTCACTTGTCTTAAGGATTTGGCTGGGGGAATGCAGTTTCATGGGAAGATGATCAAGAGTGGATTTCATAAGAACTCTCATGTTGGGAGTGGGTTGATTGACTTGTACTCCAAGTGTGCTGGAATGTTGGAGTGTATGAAGGTGTTTGAGGAAATCCCTAGACCGGATTTGGTTCTTTGGAACACCATGATATCCGGATTTTCCCAACACGAGGATTTGTCTGAGGATGCTCTTTCTAGTTTTCGGGAGATGCAGCGTGTTGGTTTTTGTCCGGATGATTGTAGTTTTGTGTGTGTGATTAGCGCGTGCTCCAATTTGTCATCTCCTTCTGTGGGGAAACAAGTTCATGCATTGGCAATCAAATCCGATATCCCATGTAACCGTGTTTCTGTTAACAATGCTCTTGTGGCAATGTACTCCAAATGTGGGAATCTTCATGATGCGAGAAGGATATTTGATACAATGCCTGAACAGAACACGGTATCGCTGAATTCAATGATTGCAGGCTATGCACAGCATGGTGCTGAGATTGAATCGCTCCAGCTCTTTGAACTGATGCTGCAAGAGCAAATTGTGCCAAATAACATAACCTTCATATCTGTTCTTTCAGCATGTGCACACACAGGAAAAGTCGATGAGGGTGAGAAGTATTTCAATATGATGAAAGAAAAGTTTGGGATTGAACCAGAAGCAGAACATTATTCATGCATGATAGATCTTTTAGGTAGGGCAGGGAAACTTGACAAAGCTGAGAGGATTATTGAAACCATGCCATTTGATCCTGGTTCTATCGAATGGGCTGCGTTGCTCGGTGCATGCAGGAAGCATGGAAATGTGGAGCTTGCAGTAAAAGCAGCCAATAAGTTTCTTCAACTGGAACCGTATAATGCAGCTCCATATGTAATGCTTTCAAACGTGTATGCAAGTGCCAGCAGATGGGAAGAGGCTGCAACAGTCAAAAGGCTGATGCGTGAACGAGGAGTGAAGAAGAAACCGGGTTGTAGTTGGATCGACATAGATAAGAAGGTGCATGTCTTTGTAGCTGAAGACACTTCACATCCAAGGATAAAAGAGATTCATGCGTACATGAGTCAATTGTTAATGAAATTGAAGCAAGCAGGGTATGTAGCAGATATAAGATTGGCATTGGTGAAAGATGAAGATGTAGTAGCACTAGAAGAGAAAGAAAGAAGGTTATGGCATCACAGTGAGAAGCTAGCAATCGCTTTTGCTCTGATCTCCACTGAAGAAGGGGTGCCAATACTTGTTGTTAAGAACCTAAGAATTTGTGGTGATTGCCACAATGCTATCAAACTTATATCAGCCATTTCTGGTAGGGAAATCACTGTTAGAGATACTCACAGGTTTCATTGTTTTAAGGAAGGGCAATGTTCATGCAGGGATTATTGGTGA

Protein sequence

>MS.gene46997.t1

MNQFQCTLHLQTFRTLLKQCITQKDFLTGKTLHAFYIKSFIPHSTYLSNHFTLLYSKFGTFSNALTAFRFTGYPNVFSYNTIIHACAKHNLPNLARQLFDEIPEPDIVSYNTLIAVHARRGECGQAVSVFKEVREVGLGLDGFTLSGVISACVEDVGLVRQLHCFALLCGYDCYASVCNAVLACYGRLGRLNEAWRVFREMGEGCRDMVSWNAMIVACGQHREGAKALRLFGEMERMGLEVDMFTMASVLTAFTCLKDLAGGMQFHGKMIKSGFHKNSHVGSGLIDLYSKCAGMLECMKVFEEIPRPDLVLWNTMISGFSQHEDLSEDALSSFREMQRVGFCPDDCSFVCVISACSNLSSPSVGKQVHALAIKSDIPCNRVSVNNALVAMYSKCGNLHDARRIFDTMPEQNTVSLNSMIAGYAQHGAEIESLQLFELMLQEQIVPNNITFISVLSACAHTGKVDEGEKYFNMMKEKFGIEPEAEHYSCMIDLLGRAGKLDKAERIIETMPFDPGSIEWAALLGACRKHGNVELAVKAANKFLQLEPYNAAPYVMLSNVYASASRWEEAATVKRLMRERGVKKKPGCSWIDIDKKVHVFVAEDTSHPRIKEIHAYMSQLLMKLKQAGYVADIRLALVKDEDVVALEEKERRLWHHSEKLAIAFALISTEEGVPILVVKNLRICGDCHNAIKLISAISGREITVRDTHRFHCFKEGQCSCRDYW