Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064065.t1 | XP_003620940.1 | 95.3 | 214 | 10 | 0 | 1 | 214 | 1 | 214 | 1.30E-115 | 425.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064065.t1 | Q5TKD8 | 75.0 | 160 | 34 | 3 | 56 | 213 | 58 | 213 | 5.7e-67 | 255.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064065.t1 | G7KJV3 | 95.3 | 214 | 10 | 0 | 1 | 214 | 1 | 214 | 9.6e-116 | 425.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene054343 | MS.gene064065 | 0.811037 | 8.55E-51 | -1.69E-46 |
| MS.gene054344 | MS.gene064065 | 0.802324 | 5.92E-49 | -1.69E-46 |
| MS.gene057196 | MS.gene064065 | 0.808051 | 3.74E-50 | -1.69E-46 |
| MS.gene057332 | MS.gene064065 | 0.822213 | 2.67E-53 | -1.69E-46 |
| MS.gene059023 | MS.gene064065 | 0.823102 | 1.66E-53 | -1.69E-46 |
| MS.gene05914 | MS.gene064065 | 0.829108 | 6.19E-55 | -1.69E-46 |
| MS.gene059756 | MS.gene064065 | 0.808456 | 3.07E-50 | -1.69E-46 |
| MS.gene061231 | MS.gene064065 | 0.816967 | 4.21E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064065.t1 | MTR_6g092700 | 95.327 | 214 | 10 | 0 | 1 | 214 | 1 | 214 | 4.27e-154 | 426 |
| MS.gene064065.t1 | MTR_3g435370 | 50.000 | 140 | 69 | 1 | 59 | 197 | 70 | 209 | 9.34e-49 | 160 |
| MS.gene064065.t1 | MTR_3g435370 | 50.000 | 140 | 69 | 1 | 59 | 197 | 70 | 209 | 1.62e-48 | 159 |
| MS.gene064065.t1 | MTR_7g085310 | 42.373 | 177 | 88 | 3 | 36 | 208 | 74 | 240 | 4.37e-43 | 146 |
| MS.gene064065.t1 | MTR_7g085310 | 45.324 | 139 | 62 | 3 | 36 | 170 | 74 | 202 | 7.37e-36 | 125 |
| MS.gene064065.t1 | MTR_1g023140 | 30.435 | 115 | 75 | 3 | 76 | 188 | 7 | 118 | 1.43e-15 | 70.5 |
| MS.gene064065.t1 | MTR_3g112410 | 29.730 | 111 | 73 | 3 | 76 | 184 | 7 | 114 | 5.27e-12 | 60.8 |
| MS.gene064065.t1 | MTR_7g080250 | 32.258 | 93 | 59 | 2 | 90 | 181 | 89 | 178 | 1.97e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064065.t1 | AT4G29670 | 74.522 | 157 | 40 | 0 | 49 | 205 | 77 | 233 | 1.67e-84 | 250 |
| MS.gene064065.t1 | AT4G26160 | 73.188 | 138 | 36 | 1 | 49 | 185 | 66 | 203 | 8.49e-74 | 223 |
| MS.gene064065.t1 | AT4G29670 | 77.778 | 126 | 28 | 0 | 49 | 174 | 77 | 202 | 7.51e-71 | 216 |
| MS.gene064065.t1 | AT2G33270 | 43.373 | 166 | 92 | 2 | 49 | 212 | 65 | 230 | 1.50e-44 | 150 |
| MS.gene064065.t1 | AT1G08570 | 46.479 | 142 | 75 | 1 | 68 | 208 | 58 | 199 | 1.04e-43 | 147 |
| MS.gene064065.t1 | AT1G08570 | 46.479 | 142 | 75 | 1 | 68 | 208 | 89 | 230 | 1.94e-43 | 147 |
| MS.gene064065.t1 | AT5G61440 | 43.836 | 146 | 80 | 2 | 54 | 197 | 62 | 207 | 2.17e-43 | 146 |
| MS.gene064065.t1 | AT1G08570 | 45.455 | 132 | 72 | 0 | 77 | 208 | 1 | 132 | 3.61e-40 | 135 |
| MS.gene064065.t1 | AT1G08570 | 45.455 | 132 | 72 | 0 | 77 | 208 | 1 | 132 | 3.61e-40 | 135 |
| MS.gene064065.t1 | AT5G61440 | 49.074 | 108 | 54 | 1 | 68 | 174 | 77 | 184 | 6.30e-35 | 122 |
| MS.gene064065.t1 | AT5G42980 | 27.928 | 111 | 75 | 3 | 76 | 184 | 6 | 113 | 1.78e-11 | 59.7 |
| MS.gene064065.t1 | AT3G02730 | 28.713 | 101 | 68 | 2 | 86 | 185 | 78 | 175 | 2.22e-11 | 60.8 |
Find 43 sgRNAs with CRISPR-Local
Find 217 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTTGAGGAAAACAATTTC+AGG | 0.279414 | 6.1:+79639830 | None:intergenic |
| AAAACACTTGCTTCCTTTCA+AGG | 0.304706 | 6.1:-79641845 | MS.gene064065:intron |
| TGTGCAACTGTTTCGGAAAC+TGG | 0.339692 | 6.1:-79640967 | MS.gene064065:CDS |
| TCTCATCAAAATTTACTTTG+AGG | 0.360659 | 6.1:+79639816 | None:intergenic |
| TCAGGTATGTGCAACTGTTT+CGG | 0.375166 | 6.1:-79640974 | MS.gene064065:intron |
| CGGAAACTGGTCAGCCGAAA+TGG | 0.396490 | 6.1:-79640954 | MS.gene064065:CDS |
| GCCTAAGGGAATCGGTGATT+TGG | 0.399227 | 6.1:-79638817 | MS.gene064065:CDS |
| CCCTCTTGGGTGAGAGTGGC+GGG | 0.408460 | 6.1:+79641896 | None:intergenic |
| TAGAGGGGCTGAGGGGCAGC+TGG | 0.427418 | 6.1:-79639738 | MS.gene064065:CDS |
| AGAGTCTGCTGGTCTATCCT+TGG | 0.450801 | 6.1:+79638773 | None:intergenic |
| CCTCTATAAAAGTGGAAGTA+AGG | 0.454670 | 6.1:+79639755 | None:intergenic |
| GAGTCTGCTGGTCTATCCTT+GGG | 0.472914 | 6.1:+79638774 | None:intergenic |
| AGGAGATGAAAGTGGAAGAA+GGG | 0.477081 | 6.1:+79641942 | None:intergenic |
| ATGCAGCATTGGTCCGCCTA+AGG | 0.490466 | 6.1:-79638832 | MS.gene064065:CDS |
| CTTTGAGGAAAACAATTTCA+GGG | 0.490623 | 6.1:+79639831 | None:intergenic |
| ATCGAGCTGTGTTATGCGTC+TGG | 0.496931 | 6.1:+79638853 | None:intergenic |
| AGGAAGAGAGAAAACCCTCT+TGG | 0.498280 | 6.1:+79641882 | None:intergenic |
| ATTGGTCCGCCTAAGGGAAT+CGG | 0.499471 | 6.1:-79638825 | MS.gene064065:CDS |
| CCTCAGCCCCTCTATAAAAG+TGG | 0.502567 | 6.1:+79639747 | None:intergenic |
| AAGGAGATGAAAGTGGAAGA+AGG | 0.512126 | 6.1:+79641941 | None:intergenic |
| GACTATCAAACAGAGTCTGC+TGG | 0.516214 | 6.1:+79638762 | None:intergenic |
| GGAAGAGAGAAAACCCTCTT+GGG | 0.519674 | 6.1:+79641883 | None:intergenic |
| TGAAACTTCCTCTGCTCCCA+AGG | 0.533659 | 6.1:-79638790 | MS.gene064065:CDS |
| GAGGTGGAAGGAGATGAAAG+TGG | 0.533907 | 6.1:+79641934 | None:intergenic |
| AACACAGCTCGATGCAGCAT+TGG | 0.540627 | 6.1:-79638843 | MS.gene064065:CDS |
| GAGTGAATGTCAATCATGTT+TGG | 0.541674 | 6.1:+79640916 | None:intergenic |
| TGCAGCATTGGTCCGCCTAA+GGG | 0.557737 | 6.1:-79638831 | MS.gene064065:CDS |
| CGGGAGAGTATTGAAGAAAG+AGG | 0.559901 | 6.1:+79641915 | None:intergenic |
| ACCCTCTTGGGTGAGAGTGG+CGG | 0.567283 | 6.1:+79641895 | None:intergenic |
| AAAACCCTCTTGGGTGAGAG+TGG | 0.577623 | 6.1:+79641892 | None:intergenic |
| TGGTCTATCCTTGGGAGCAG+AGG | 0.581078 | 6.1:+79638782 | None:intergenic |
| CCCGCCACTCTCACCCAAGA+GGG | 0.583084 | 6.1:-79641896 | MS.gene064065:CDS |
| TTGCCGAGCATTATTCCCCA+AGG | 0.587200 | 6.1:-79640812 | MS.gene064065:intron |
| GAGAGTATTGAAGAAAGAGG+TGG | 0.588678 | 6.1:+79641918 | None:intergenic |
| GTACCTTGGGGAATAATGCT+CGG | 0.591191 | 6.1:+79640809 | None:intergenic |
| AACTGGTCAGCCGAAATGGT+GGG | 0.593234 | 6.1:-79640950 | MS.gene064065:CDS |
| AGCTGTGTTATGCGTCTGGA+TGG | 0.594097 | 6.1:+79638857 | None:intergenic |
| AAACTGGTCAGCCGAAATGG+TGG | 0.607747 | 6.1:-79640951 | MS.gene064065:CDS |
| GAATGCTTTGAGTCAAGCTG+AGG | 0.620265 | 6.1:-79640878 | MS.gene064065:CDS |
| ACCAAATCACCGATTCCCTT+AGG | 0.635937 | 6.1:+79638816 | None:intergenic |
| TCCCGCCACTCTCACCCAAG+AGG | 0.638518 | 6.1:-79641897 | MS.gene064065:CDS |
| GTATTGAAGAAAGAGGTGGA+AGG | 0.664071 | 6.1:+79641922 | None:intergenic |
| AAATCACCGATTCCCTTAGG+CGG | 0.696724 | 6.1:+79638819 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATAACAATAATAAAAAG+GGG | + | chr6.1:79638956-79638975 | None:intergenic | 10.0% |
| !! | ATTAAAGCATAATTAAAAAA+AGG | + | chr6.1:79639031-79639050 | None:intergenic | 10.0% |
| !! | TGTAATGAAAATAAATAATT+GGG | - | chr6.1:79640417-79640436 | MS.gene064065:intron | 10.0% |
| !! | TTAAAGCATAATTAAAAAAA+GGG | + | chr6.1:79639030-79639049 | None:intergenic | 10.0% |
| !! | AAAATCTATTAAAACTACAT+TGG | - | chr6.1:79641391-79641410 | MS.gene064065:intron | 15.0% |
| !! | ATTACAGTTTCAAAAAATAA+AGG | - | chr6.1:79641875-79641894 | MS.gene064065:CDS | 15.0% |
| !! | CTGTAATGAAAATAAATAAT+TGG | - | chr6.1:79640416-79640435 | MS.gene064065:intron | 15.0% |
| !! | GTAATGAAAATAAATAATTG+GGG | - | chr6.1:79640418-79640437 | MS.gene064065:intron | 15.0% |
| !! | TAAAGCATAATTAAAAAAAG+GGG | + | chr6.1:79639029-79639048 | None:intergenic | 15.0% |
| !!! | GTGAAATAAGTTAATTATTT+TGG | - | chr6.1:79639720-79639739 | MS.gene064065:CDS | 15.0% |
| !!! | TAGTTATTGTTGAATTTTAT+GGG | - | chr6.1:79639909-79639928 | MS.gene064065:intron | 15.0% |
| !!! | TGAATAGAATATTTTTATTC+AGG | + | chr6.1:79640763-79640782 | None:intergenic | 15.0% |
| !! | AAAATAACTGTTACATTTGA+GGG | + | chr6.1:79641453-79641472 | None:intergenic | 20.0% |
| !! | AATAAGTTTATTATCCAAAC+AGG | + | chr6.1:79639667-79639686 | None:intergenic | 20.0% |
| !! | ACTAAAACATGAATTTGAAT+AGG | - | chr6.1:79640234-79640253 | MS.gene064065:intron | 20.0% |
| !! | AGTTTATACTTATTAGAAAG+GGG | - | chr6.1:79640270-79640289 | MS.gene064065:intron | 20.0% |
| !! | ATAAGTTTATTATCCAAACA+GGG | + | chr6.1:79639666-79639685 | None:intergenic | 20.0% |
| !! | ATTAATTTAGATGGTAGAAT+TGG | - | chr6.1:79641364-79641383 | MS.gene064065:intron | 20.0% |
| !! | CTATGTAACATAGAATTATA+GGG | - | chr6.1:79641493-79641512 | MS.gene064065:intron | 20.0% |
| !! | CTTAATAGTAAAAATTACCT+TGG | + | chr6.1:79641067-79641086 | None:intergenic | 20.0% |
| !! | GAATATTAAAAAGCAATACT+CGG | + | chr6.1:79641546-79641565 | None:intergenic | 20.0% |
| !! | GAGTTTATACTTATTAGAAA+GGG | - | chr6.1:79640269-79640288 | MS.gene064065:intron | 20.0% |
| !! | TAAACTTATTTGTAGCTTAT+AGG | - | chr6.1:79639677-79639696 | MS.gene064065:intron | 20.0% |
| !! | TCTACTAAATACTACAAAAT+TGG | + | chr6.1:79639518-79639537 | None:intergenic | 20.0% |
| !! | TCTATGTAACATAGAATTAT+AGG | - | chr6.1:79641492-79641511 | MS.gene064065:intron | 20.0% |
| !! | TTATTGAATAAATCTTTCCA+TGG | - | chr6.1:79640527-79640546 | MS.gene064065:intron | 20.0% |
| !! | TTGATTGACTAATTATTATC+CGG | - | chr6.1:79640707-79640726 | MS.gene064065:intron | 20.0% |
| !!! | ATTTGACAAATATGTTTTGA+AGG | + | chr6.1:79640332-79640351 | None:intergenic | 20.0% |
| !!! | CTAGTTATTGTTGAATTTTA+TGG | - | chr6.1:79639908-79639927 | MS.gene064065:intron | 20.0% |
| !!! | GTTAATTATTTTGGAAAAAG+TGG | - | chr6.1:79639729-79639748 | MS.gene064065:CDS | 20.0% |
| !!! | GTTTTTACTTTATGTCTTTT+AGG | - | chr6.1:79639576-79639595 | MS.gene064065:intron | 20.0% |
| !!! | TCAAATGTAACAGTTATTTT+GGG | - | chr6.1:79641453-79641472 | MS.gene064065:intron | 20.0% |
| !!! | TTACATTTTTTTGCATGATT+AGG | - | chr6.1:79638978-79638997 | MS.gene064065:intron | 20.0% |
| !!! | TTTACATATTTTCCTTGTTA+AGG | - | chr6.1:79641749-79641768 | MS.gene064065:intron | 20.0% |
| ! | AAAAAAAAAGTGACCTTGAA+AGG | + | chr6.1:79638929-79638948 | None:intergenic | 25.0% |
| ! | AAAAATATTCTATTCACTGC+TGG | - | chr6.1:79640767-79640786 | MS.gene064065:intron | 25.0% |
| ! | AAAAGTGGTTAAATAACTCT+TGG | - | chr6.1:79639744-79639763 | MS.gene064065:CDS | 25.0% |
| ! | AAACAAAATACATCAGGTAT+AGG | + | chr6.1:79640870-79640889 | None:intergenic | 25.0% |
| ! | AACACACATACATGATTAAA+AGG | + | chr6.1:79639122-79639141 | None:intergenic | 25.0% |
| ! | AATTATTATCCGGATAATAC+AGG | - | chr6.1:79640717-79640736 | MS.gene064065:intron | 25.0% |
| ! | ACACACATACATGATTAAAA+GGG | + | chr6.1:79639121-79639140 | None:intergenic | 25.0% |
| ! | ACATTAGTAGTAATAGGATT+AGG | - | chr6.1:79639087-79639106 | MS.gene064065:intron | 25.0% |
| ! | ATAATGCATATTTGAGTGTT+TGG | - | chr6.1:79641670-79641689 | MS.gene064065:intron | 25.0% |
| ! | ATTATTATCCGGATAATACA+GGG | - | chr6.1:79640718-79640737 | MS.gene064065:intron | 25.0% |
| ! | ATTCAATCAGATATAACTAG+TGG | - | chr6.1:79640350-79640369 | MS.gene064065:intron | 25.0% |
| ! | CAAAATAACTGTTACATTTG+AGG | + | chr6.1:79641454-79641473 | None:intergenic | 25.0% |
| ! | CGAGTTTATACTTATTAGAA+AGG | - | chr6.1:79640268-79640287 | MS.gene064065:intron | 25.0% |
| ! | GCTCATAGTATTAATTTAGA+TGG | - | chr6.1:79641355-79641374 | MS.gene064065:intron | 25.0% |
| ! | TAAATACTACAAAATTGGAC+TGG | + | chr6.1:79639513-79639532 | None:intergenic | 25.0% |
| ! | TACAAGAAAAAAGACTTCTT+TGG | - | chr6.1:79639385-79639404 | MS.gene064065:intron | 25.0% |
| ! | TCATTGACATTAGTAGTAAT+AGG | - | chr6.1:79639081-79639100 | MS.gene064065:intron | 25.0% |
| ! | TCTCATCAAAATTTACTTTG+AGG | + | chr6.1:79640945-79640964 | None:intergenic | 25.0% |
| !! | CTCAAATGTAACAGTTATTT+TGG | - | chr6.1:79641452-79641471 | MS.gene064065:intron | 25.0% |
| !! | TTTTCATTACAGTCCTTTTA+TGG | + | chr6.1:79640408-79640427 | None:intergenic | 25.0% |
| !!! | ACCTGATGTATTTTGTTTAA+TGG | - | chr6.1:79640872-79640891 | MS.gene064065:CDS | 25.0% |
| !!! | AGTCTTTTTTCTTGTATGTT+TGG | + | chr6.1:79639381-79639400 | None:intergenic | 25.0% |
| !!! | CAAATTCATGTTTTAGTAGA+AGG | + | chr6.1:79640231-79640250 | None:intergenic | 25.0% |
| !!! | GATTTTGAGTGATTTATGTT+TGG | - | chr6.1:79639177-79639196 | MS.gene064065:intron | 25.0% |
| !!! | GTGTGTTTTTAAAGTATGTT+TGG | - | chr6.1:79639135-79639154 | MS.gene064065:intron | 25.0% |
| !!! | TGTATTTTGTTTAATGGCTT+TGG | - | chr6.1:79640878-79640897 | MS.gene064065:CDS | 25.0% |
| ACTAATAGCATCACATCAAA+AGG | + | chr6.1:79639443-79639462 | None:intergenic | 30.0% | |
| AGAAAAAAGACTTCTTTGGT+TGG | - | chr6.1:79639389-79639408 | MS.gene064065:intron | 30.0% | |
| ATAATCCCACATTTGAATCT+TGG | - | chr6.1:79639057-79639076 | MS.gene064065:intron | 30.0% | |
| ATCATGGATGAAAACCAAAA+TGG | + | chr6.1:79640573-79640592 | None:intergenic | 30.0% | |
| ATGATAAAGACTACTACACA+AGG | - | chr6.1:79640588-79640607 | MS.gene064065:intron | 30.0% | |
| ATGCAATGAAATACTACCAA+GGG | + | chr6.1:79640036-79640055 | None:intergenic | 30.0% | |
| ATGTGATCAACATGGATAAA+AGG | - | chr6.1:79640451-79640470 | MS.gene064065:intron | 30.0% | |
| CAAAAAGTAAAAGAGTGAAG+GGG | + | chr6.1:79639991-79640010 | None:intergenic | 30.0% | |
| CAATATTTCCCTGTATTATC+CGG | + | chr6.1:79640729-79640748 | None:intergenic | 30.0% | |
| CATCATACATTTGTTTCACT+AGG | + | chr6.1:79641798-79641817 | None:intergenic | 30.0% | |
| CCAAAAAGTAAAAGAGTGAA+GGG | + | chr6.1:79639992-79640011 | None:intergenic | 30.0% | |
| CTAATAGCATCACATCAAAA+GGG | + | chr6.1:79639442-79639461 | None:intergenic | 30.0% | |
| GATAAATGAAAGAGCAAGAA+TGG | - | chr6.1:79641252-79641271 | MS.gene064065:intron | 30.0% | |
| GCCATTAAACAAAATACATC+AGG | + | chr6.1:79640876-79640895 | None:intergenic | 30.0% | |
| GTGAAACAAATGTATGATGA+TGG | - | chr6.1:79641799-79641818 | MS.gene064065:intron | 30.0% | |
| TAATAACAACAAGCACCAAA+TGG | + | chr6.1:79639640-79639659 | None:intergenic | 30.0% | |
| TAATAGCATCACATCAAAAG+GGG | + | chr6.1:79639441-79639460 | None:intergenic | 30.0% | |
| TAATCCCACATTTGAATCTT+GGG | - | chr6.1:79639058-79639077 | MS.gene064065:intron | 30.0% | |
| TACATCAAATGTGATCAACA+TGG | - | chr6.1:79640443-79640462 | MS.gene064065:intron | 30.0% | |
| TAGTTCAGTAATTAAGACAC+TGG | + | chr6.1:79640135-79640154 | None:intergenic | 30.0% | |
| TCACTTATCATGATGAAAAC+TGG | + | chr6.1:79639704-79639723 | None:intergenic | 30.0% | |
| TCCAAAAAGTAAAAGAGTGA+AGG | + | chr6.1:79639993-79640012 | None:intergenic | 30.0% | |
| TTACTGAACTATACTGAGTT+TGG | - | chr6.1:79640144-79640163 | MS.gene064065:intron | 30.0% | |
| TTAGTAGTAATAGGATTAGG+AGG | - | chr6.1:79639090-79639109 | MS.gene064065:intron | 30.0% | |
| TTGTGTAGTAGTCTTTATCA+TGG | + | chr6.1:79640589-79640608 | None:intergenic | 30.0% | |
| ! | ACTTTGAGGAAAACAATTTC+AGG | + | chr6.1:79640931-79640950 | None:intergenic | 30.0% |
| ! | ATGCATTGACAATAAGCTAA+TGG | - | chr6.1:79641841-79641860 | MS.gene064065:intron | 30.0% |
| ! | CTTTGAGGAAAACAATTTCA+GGG | + | chr6.1:79640930-79640949 | None:intergenic | 30.0% |
| ! | TTAGAAGTCTTTGACCATTT+TGG | - | chr6.1:79640556-79640575 | MS.gene064065:intron | 30.0% |
| ! | TTGAAAGTGACGTTCTTTTT+CGG | - | chr6.1:79641417-79641436 | MS.gene064065:intron | 30.0% |
| ! | TTGTTGAATTTTATGGGACT+TGG | - | chr6.1:79639915-79639934 | MS.gene064065:intron | 30.0% |
| !! | AAGTGGATTATCTAAGTGTA+TGG | - | chr6.1:79641708-79641727 | MS.gene064065:intron | 30.0% |
| !! | CTTACTTCCACTTTTATAGA+GGG | - | chr6.1:79641004-79641023 | MS.gene064065:intron | 30.0% |
| !! | TTACTTCCACTTTTATAGAG+GGG | - | chr6.1:79641005-79641024 | MS.gene064065:intron | 30.0% |
| !!! | ATGTAACAGTTATTTTGGGA+CGG | - | chr6.1:79641457-79641476 | MS.gene064065:intron | 30.0% |
| AAAACACTTGCTTCCTTTCA+AGG | - | chr6.1:79638913-79638932 | MS.gene064065:intron | 35.0% | |
| AAGACTTCTAAACTGATCCA+TGG | + | chr6.1:79640547-79640566 | None:intergenic | 35.0% | |
| AATAGCATCACATCAAAAGG+GGG | + | chr6.1:79639440-79639459 | None:intergenic | 35.0% | |
| AATGACCCAAGATTCAAATG+TGG | + | chr6.1:79639066-79639085 | None:intergenic | 35.0% | |
| AATTGTGTGATGTGATTCGA+AGG | + | chr6.1:79640509-79640528 | None:intergenic | 35.0% | |
| ATGACCCAAGATTCAAATGT+GGG | + | chr6.1:79639065-79639084 | None:intergenic | 35.0% | |
| CATGCAATGAAATACTACCA+AGG | + | chr6.1:79640037-79640056 | None:intergenic | 35.0% | |
| CCTCTATAAAAGTGGAAGTA+AGG | + | chr6.1:79641006-79641025 | None:intergenic | 35.0% | |
| CTGTTACGAATTTACTAACC+TGG | - | chr6.1:79640173-79640192 | MS.gene064065:intron | 35.0% | |
| GAAATGTGACAGACTATTGT+GGG | + | chr6.1:79641213-79641232 | None:intergenic | 35.0% | |
| GAGTGAATGTCAATCATGTT+TGG | + | chr6.1:79639845-79639864 | None:intergenic | 35.0% | |
| GTAGTATTTCATTGCATGTC+CGG | - | chr6.1:79640039-79640058 | MS.gene064065:intron | 35.0% | |
| TAATTCTCTTCGAAACGTAG+AGG | - | chr6.1:79641600-79641619 | MS.gene064065:intron | 35.0% | |
| TGAAATGTGACAGACTATTG+TGG | + | chr6.1:79641214-79641233 | None:intergenic | 35.0% | |
| TGGATGTTACAAGTTCCATT+TGG | - | chr6.1:79639622-79639641 | MS.gene064065:intron | 35.0% | |
| TTATGGAAGTGGAGTACAAT+AGG | + | chr6.1:79640391-79640410 | None:intergenic | 35.0% | |
| TTGAGAGAAACAAACATGTC+AGG | - | chr6.1:79639316-79639335 | MS.gene064065:intron | 35.0% | |
| TTGCATGCTGCAGAAATTAT+CGG | - | chr6.1:79640840-79640859 | MS.gene064065:CDS | 35.0% | |
| TTGTACTCCACTTCCATAAA+AGG | - | chr6.1:79640392-79640411 | MS.gene064065:intron | 35.0% | |
| ! | ACATTCAGACTTTTGCACAT+TGG | + | chr6.1:79640973-79640992 | None:intergenic | 35.0% |
| ! | ATTTTCATGTTCACTTGCCA+AGG | - | chr6.1:79641047-79641066 | MS.gene064065:intron | 35.0% |
| ! | CTTTACCACTTGTTTAGTTC+CGG | + | chr6.1:79640061-79640080 | None:intergenic | 35.0% |
| ! | GTTGTTATTATGACCCTGTT+TGG | - | chr6.1:79639650-79639669 | MS.gene064065:intron | 35.0% |
| ! | TGTGTAAGTGTAAAGCATCA+TGG | - | chr6.1:79639602-79639621 | MS.gene064065:intron | 35.0% |
| ! | TTACAGTCCTTTTATGGAAG+TGG | + | chr6.1:79640402-79640421 | None:intergenic | 35.0% |
| !! | AATACGGTTGGTTTGATGAT+TGG | + | chr6.1:79641173-79641192 | None:intergenic | 35.0% |
| !! | ATACGGTTGGTTTGATGATT+GGG | + | chr6.1:79641172-79641191 | None:intergenic | 35.0% |
| !! | CCCTTCACTCTTTTACTTTT+TGG | - | chr6.1:79639989-79640008 | MS.gene064065:intron | 35.0% |
| !! | CCTTACTTCCACTTTTATAG+AGG | - | chr6.1:79641003-79641022 | MS.gene064065:intron | 35.0% |
| !!! | AAGTATGTTTGGTTTTGCGT+TGG | - | chr6.1:79639146-79639165 | MS.gene064065:intron | 35.0% |
| !!! | TGCTGGAAAGTTTTCTAGTT+AGG | - | chr6.1:79640784-79640803 | MS.gene064065:intron | 35.0% |
| AAGGAGATGAAAGTGGAAGA+AGG | + | chr6.1:79638820-79638839 | None:intergenic | 40.0% | |
| ACAATAGGAAACTCAGCATG+CGG | + | chr6.1:79640376-79640395 | None:intergenic | 40.0% | |
| AGCAACATGAATCAGACAGT+CGG | + | chr6.1:79640631-79640650 | None:intergenic | 40.0% | |
| AGGAGATGAAAGTGGAAGAA+GGG | + | chr6.1:79638819-79638838 | None:intergenic | 40.0% | |
| AGTTAATGAGTGGGGTGATA+AGG | + | chr6.1:79641142-79641161 | None:intergenic | 40.0% | |
| CGTTTCGAAGAGAATTATGC+AGG | + | chr6.1:79641597-79641616 | None:intergenic | 40.0% | |
| GCAGCATGCAAATTAAAGCA+TGG | + | chr6.1:79640831-79640850 | None:intergenic | 40.0% | |
| GCTTTGATTCTCTTCACTTC+AGG | - | chr6.1:79639766-79639785 | MS.gene064065:CDS | 40.0% | |
| GTATTGAAGAAAGAGGTGGA+AGG | + | chr6.1:79638839-79638858 | None:intergenic | 40.0% | |
| GTTGCTCTAGTATTCTGCTT+TGG | - | chr6.1:79640645-79640664 | MS.gene064065:intron | 40.0% | |
| TCAGGTATGTGCAACTGTTT+CGG | - | chr6.1:79639784-79639803 | MS.gene064065:CDS | 40.0% | |
| TGCATATTTGAGTGTTTGGC+TGG | - | chr6.1:79641674-79641693 | MS.gene064065:intron | 40.0% | |
| TTACTGCATGTGCAGCATTA+GGG | - | chr6.1:79640671-79640690 | MS.gene064065:intron | 40.0% | |
| ! | AGGAAGCAAGTGTTTTCTTC+TGG | + | chr6.1:79638909-79638928 | None:intergenic | 40.0% |
| ! | CGGTGGGAGCATATATAATA+CGG | + | chr6.1:79641189-79641208 | None:intergenic | 40.0% |
| ! | GATGCTTCTGTTTTCTGTAC+TGG | - | chr6.1:79641568-79641587 | MS.gene064065:intron | 40.0% |
| ! | GCATTCTTTTCCCACCATTT+CGG | + | chr6.1:79639821-79639840 | None:intergenic | 40.0% |
| ! | GGAAGCAAGTGTTTTCTTCT+GGG | + | chr6.1:79638908-79638927 | None:intergenic | 40.0% |
| ! | GGGAGCATATATAATACGGT+TGG | + | chr6.1:79641185-79641204 | None:intergenic | 40.0% |
| ! | TCGAAGGTTTTACTCTGTCA+GGG | + | chr6.1:79640493-79640512 | None:intergenic | 40.0% |
| ! | TTCGAAGGTTTTACTCTGTC+AGG | + | chr6.1:79640494-79640513 | None:intergenic | 40.0% |
| ! | TTGGTTTGATGATTGGGGTA+GGG | + | chr6.1:79641166-79641185 | None:intergenic | 40.0% |
| !! | CGCATTTCTAGTCCTTAACA+AGG | + | chr6.1:79641764-79641783 | None:intergenic | 40.0% |
| !! | GAGAGTATTGAAGAAAGAGG+TGG | + | chr6.1:79638843-79638862 | None:intergenic | 40.0% |
| !! | GTACAGAAAACAGAAGCATC+AGG | + | chr6.1:79641568-79641587 | None:intergenic | 40.0% |
| !! | TACGGTTGGTTTGATGATTG+GGG | + | chr6.1:79641171-79641190 | None:intergenic | 40.0% |
| !! | TCTTGAAGCAAGAGTACCTT+GGG | + | chr6.1:79639965-79639984 | None:intergenic | 40.0% |
| !! | TTCTTGAAGCAAGAGTACCT+TGG | + | chr6.1:79639966-79639985 | None:intergenic | 40.0% |
| !!! | AGTTATTTTGGGACGGACTA+CGG | - | chr6.1:79641464-79641483 | MS.gene064065:intron | 40.0% |
| !!! | TTTTTTTGTTGTGCTGCCCT+TGG | - | chr6.1:79640017-79640036 | MS.gene064065:intron | 40.0% |
| AGCAGTAGTTAGTTACTGCC+TGG | - | chr6.1:79641093-79641112 | MS.gene064065:intron | 45.0% | |
| AGGAAGAGAGAAAACCCTCT+TGG | + | chr6.1:79638879-79638898 | None:intergenic | 45.0% | |
| CAATTGAGTGCTAAGCATCC+AGG | + | chr6.1:79640194-79640213 | None:intergenic | 45.0% | |
| CATGTCCGGAACTAAACAAG+TGG | - | chr6.1:79640053-79640072 | MS.gene064065:intron | 45.0% | |
| CTTACTGCATGTGCAGCATT+AGG | - | chr6.1:79640670-79640689 | MS.gene064065:intron | 45.0% | |
| GAATCAGACAGTCGGGAATT+GGG | + | chr6.1:79640623-79640642 | None:intergenic | 45.0% | |
| GCAACATGAATCAGACAGTC+GGG | + | chr6.1:79640630-79640649 | None:intergenic | 45.0% | |
| GGAAGAGAGAAAACCCTCTT+GGG | + | chr6.1:79638878-79638897 | None:intergenic | 45.0% | |
| GTACCTTGGGGAATAATGCT+CGG | + | chr6.1:79639952-79639971 | None:intergenic | 45.0% | |
| TACTGCATGTGCAGCATTAG+GGG | - | chr6.1:79640672-79640691 | MS.gene064065:intron | 45.0% | |
| TGAATCAGACAGTCGGGAAT+TGG | + | chr6.1:79640624-79640643 | None:intergenic | 45.0% | |
| TGTGACAGACTATTGTGGGA+CGG | + | chr6.1:79641209-79641228 | None:intergenic | 45.0% | |
| TGTGCAACTGTTTCGGAAAC+TGG | - | chr6.1:79639791-79639810 | MS.gene064065:CDS | 45.0% | |
| ! | ACTTTTATAGAGGGGCTGAG+GGG | - | chr6.1:79641013-79641032 | MS.gene064065:intron | 45.0% |
| ! | AGCAAGTGTTTTCTTCTGGG+TGG | + | chr6.1:79638905-79638924 | None:intergenic | 45.0% |
| ! | CACTTTTATAGAGGGGCTGA+GGG | - | chr6.1:79641012-79641031 | MS.gene064065:intron | 45.0% |
| ! | GAATGCTTTGAGTCAAGCTG+AGG | - | chr6.1:79639880-79639899 | MS.gene064065:intron | 45.0% |
| ! | GGCTGGTTGTATTCAGAAAG+TGG | - | chr6.1:79641691-79641710 | MS.gene064065:intron | 45.0% |
| ! | TGGTTTGATGATTGGGGTAG+GGG | + | chr6.1:79641165-79641184 | None:intergenic | 45.0% |
| ! | TGTTTTCTTCTGGGTGGAGA+AGG | + | chr6.1:79638899-79638918 | None:intergenic | 45.0% |
| !! | AAATCACCGATTCCCTTAGG+CGG | + | chr6.1:79641942-79641961 | None:intergenic | 45.0% |
| !! | ACCAAATCACCGATTCCCTT+AGG | + | chr6.1:79641945-79641964 | None:intergenic | 45.0% |
| !! | CGGGAGAGTATTGAAGAAAG+AGG | + | chr6.1:79638846-79638865 | None:intergenic | 45.0% |
| !! | CTTGAAGCAAGAGTACCTTG+GGG | + | chr6.1:79639964-79639983 | None:intergenic | 45.0% |
| !! | GTTGGTTTGATGATTGGGGT+AGG | + | chr6.1:79641167-79641186 | None:intergenic | 45.0% |
| !! | AATAATAACAATAATAAAAA+GGG | + | chr6.1:79638957-79638976 | None:intergenic | 5.0% |
| !! | TAATAATAACAATAATAAAA+AGG | + | chr6.1:79638958-79638977 | None:intergenic | 5.0% |
| AAAACCCTCTTGGGTGAGAG+TGG | + | chr6.1:79638869-79638888 | None:intergenic | 50.0% | |
| AAACTGGTCAGCCGAAATGG+TGG | - | chr6.1:79639807-79639826 | MS.gene064065:CDS | 50.0% | |
| AACACAGCTCGATGCAGCAT+TGG | - | chr6.1:79641915-79641934 | MS.gene064065:CDS | 50.0% | |
| AACTGGTCAGCCGAAATGGT+GGG | - | chr6.1:79639808-79639827 | MS.gene064065:CDS | 50.0% | |
| ACAGACTATTGTGGGACGGT+GGG | + | chr6.1:79641205-79641224 | None:intergenic | 50.0% | |
| ACAGTCGGGAATTGGGAATC+GGG | + | chr6.1:79640616-79640635 | None:intergenic | 50.0% | |
| AGCTGTGTTATGCGTCTGGA+TGG | + | chr6.1:79641904-79641923 | None:intergenic | 50.0% | |
| ATCGAGCTGTGTTATGCGTC+TGG | + | chr6.1:79641908-79641927 | None:intergenic | 50.0% | |
| ATTGGTCCGCCTAAGGGAAT+CGG | - | chr6.1:79641933-79641952 | MS.gene064065:CDS | 50.0% | |
| CCTCAGCCCCTCTATAAAAG+TGG | + | chr6.1:79641014-79641033 | None:intergenic | 50.0% | |
| GACAGTCGGGAATTGGGAAT+CGG | + | chr6.1:79640617-79640636 | None:intergenic | 50.0% | |
| GAGGTGGAAGGAGATGAAAG+TGG | + | chr6.1:79638827-79638846 | None:intergenic | 50.0% | |
| GCCTAAGGGAATCGGTGATT+TGG | - | chr6.1:79641941-79641960 | MS.gene064065:CDS | 50.0% | |
| GGGTAGGGGAGTTAATGAGT+GGG | + | chr6.1:79641151-79641170 | None:intergenic | 50.0% | |
| GGTAGGGGAGTTAATGAGTG+GGG | + | chr6.1:79641150-79641169 | None:intergenic | 50.0% | |
| TGAAACTTCCTCTGCTCCCA+AGG | - | chr6.1:79641968-79641987 | MS.gene064065:CDS | 50.0% | |
| TGGGGTGATAAGGAGTGAGA+GGG | + | chr6.1:79641132-79641151 | None:intergenic | 50.0% | |
| TTGCCGAGCATTATTCCCCA+AGG | - | chr6.1:79639946-79639965 | MS.gene064065:intron | 50.0% | |
| ! | AGAGTCTGCTGGTCTATCCT+TGG | + | chr6.1:79641988-79642007 | None:intergenic | 50.0% |
| ! | GAGTCTGCTGGTCTATCCTT+GGG | + | chr6.1:79641987-79642006 | None:intergenic | 50.0% |
| !! | CCACTTTTATAGAGGGGCTG+AGG | - | chr6.1:79641011-79641030 | MS.gene064065:intron | 50.0% |
| CGGAAACTGGTCAGCCGAAA+TGG | - | chr6.1:79639804-79639823 | MS.gene064065:CDS | 55.0% | |
| GACAGACTATTGTGGGACGG+TGG | + | chr6.1:79641206-79641225 | None:intergenic | 55.0% | |
| GAGGGTTCGATCTTCACACC+AGG | + | chr6.1:79641114-79641133 | None:intergenic | 55.0% | |
| GGGGTAGGGGAGTTAATGAG+TGG | + | chr6.1:79641152-79641171 | None:intergenic | 55.0% | |
| GTGGGGTGATAAGGAGTGAG+AGG | + | chr6.1:79641133-79641152 | None:intergenic | 55.0% | |
| TGGTCTATCCTTGGGAGCAG+AGG | + | chr6.1:79641979-79641998 | None:intergenic | 55.0% | |
| !! | ATGCAGCATTGGTCCGCCTA+AGG | - | chr6.1:79641926-79641945 | MS.gene064065:CDS | 55.0% |
| !! | TGCAGCATTGGTCCGCCTAA+GGG | - | chr6.1:79641927-79641946 | MS.gene064065:CDS | 55.0% |
| ACCCTCTTGGGTGAGAGTGG+CGG | + | chr6.1:79638866-79638885 | None:intergenic | 60.0% | |
| CCCGCCACTCTCACCCAAGA+GGG | - | chr6.1:79638862-79638881 | MS.gene064065:CDS | 65.0% | |
| CCCTCTTGGGTGAGAGTGGC+GGG | + | chr6.1:79638865-79638884 | None:intergenic | 65.0% | |
| TCCCGCCACTCTCACCCAAG+AGG | - | chr6.1:79638861-79638880 | MS.gene064065:CDS | 65.0% | |
| TAGAGGGGCTGAGGGGCAGC+TGG | - | chr6.1:79641020-79641039 | MS.gene064065:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.1 | gene | 79638767 | 79642013 | 79638767 | ID=MS.gene064065 |
| chr6.1 | mRNA | 79638767 | 79642013 | 79638767 | ID=MS.gene064065.t1;Parent=MS.gene064065 |
| chr6.1 | exon | 79641846 | 79642013 | 79641846 | ID=MS.gene064065.t1.exon1;Parent=MS.gene064065.t1 |
| chr6.1 | CDS | 79641846 | 79642013 | 79641846 | ID=cds.MS.gene064065.t1;Parent=MS.gene064065.t1 |
| chr6.1 | exon | 79640813 | 79640992 | 79640813 | ID=MS.gene064065.t1.exon2;Parent=MS.gene064065.t1 |
| chr6.1 | CDS | 79640813 | 79640992 | 79640813 | ID=cds.MS.gene064065.t1;Parent=MS.gene064065.t1 |
| chr6.1 | exon | 79639712 | 79639876 | 79639712 | ID=MS.gene064065.t1.exon3;Parent=MS.gene064065.t1 |
| chr6.1 | CDS | 79639712 | 79639876 | 79639712 | ID=cds.MS.gene064065.t1;Parent=MS.gene064065.t1 |
| chr6.1 | exon | 79638767 | 79638898 | 79638767 | ID=MS.gene064065.t1.exon4;Parent=MS.gene064065.t1 |
| chr6.1 | CDS | 79638767 | 79638898 | 79638767 | ID=cds.MS.gene064065.t1;Parent=MS.gene064065.t1 |
| Gene Sequence |
| Protein sequence |
