AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene059023


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene059023.t1 MTR_1g069240 95.495 333 14 1 1 332 1 333 0.0 627
MS.gene059023.t1 MTR_7g108590 33.588 262 153 3 84 324 183 444 1.56e-40 147
MS.gene059023.t1 MTR_7g108590 36.242 149 95 0 81 229 180 328 1.90e-24 102
MS.gene059023.t1 MTR_7g108590 36.242 149 95 0 81 229 180 328 2.77e-24 102
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene059023.t1 AT4G28740 64.706 306 96 6 29 332 52 347 5.69e-136 390
MS.gene059023.t1 AT1G02910 31.679 262 158 2 84 324 190 451 8.23e-30 118
MS.gene059023.t1 AT1G02910 35.616 146 94 0 84 229 190 335 4.04e-16 79.0

Find 88 sgRNAs with CRISPR-Local

Find 152 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCGAGCCTCTTGTGCATTCT+TGG 0.158034 1.2:+52057101 None:intergenic
AATCTAATTCTTCTCAAATT+AGG 0.208211 1.2:-52058269 MS.gene059023:intron
AGAAGAATTAGATTGTTTAT+TGG 0.275303 1.2:+52058278 None:intergenic
GGATGGAAATTTGCCTGCTT+TGG 0.289463 1.2:-52056878 MS.gene059023:CDS
TGAGGTTCTATCTCCCTTTC+GGG 0.303519 1.2:-52057316 MS.gene059023:CDS
ATAGCAATCTCACAACTAAT+TGG 0.308590 1.2:-52057237 MS.gene059023:CDS
CTGCCATAGTCTCTTCCTTC+TGG 0.310842 1.2:+52056813 None:intergenic
GTGAGGTTCTATCTCCCTTT+CGG 0.318617 1.2:-52057317 MS.gene059023:CDS
ACCTTTCACAGAAAGTCTTT+TGG 0.320758 1.2:-52056932 MS.gene059023:CDS
TGAGGAACTGAACATAAAAT+TGG 0.327285 1.2:+52058380 None:intergenic
GCCGAGACCCTTGAGAATTT+CGG 0.328655 1.2:+52057179 None:intergenic
ACCATGACATTAACAACGTT+TGG 0.352424 1.2:-52058480 MS.gene059023:CDS
CTTTGTTGTCTCTAAAGTAT+AGG 0.356891 1.2:+52057124 None:intergenic
GACCACTCGGAGGTGATAAC+TGG 0.362239 1.2:+52056784 None:intergenic
ATTGGAGCAGTATCTTTGTT+TGG 0.363564 1.2:-52057150 MS.gene059023:CDS
TATCTCCCTTTCGGGCAGTT+AGG 0.390845 1.2:-52057308 MS.gene059023:CDS
AAATTTCCATCCGTTACTAA+TGG 0.393889 1.2:+52056889 None:intergenic
CCAGTCCAGATTCCCTTTAC+CGG 0.394427 1.2:+52056239 None:intergenic
TGCACAATTACCGCCGGTAA+AGG 0.394914 1.2:-52056252 MS.gene059023:CDS
CGCTTGGATGGTCGAGTTCG+TGG 0.397559 1.2:-52056311 MS.gene059023:CDS
TACCGCCGGTAAAGGGAATC+TGG 0.408305 1.2:-52056244 MS.gene059023:CDS
CCACCAGAAGGAAGAGACTA+TGG 0.419742 1.2:-52056816 MS.gene059023:CDS
TTTGTTGCAAGTGCTTCTCT+CGG 0.428816 1.2:-52057267 MS.gene059023:CDS
GCACAATTACCGCCGGTAAA+GGG 0.429086 1.2:-52056251 MS.gene059023:CDS
ATGAAACATGGAGGTGGTGT+TGG 0.435397 1.2:+52058417 None:intergenic
TAGTGGGAACAGAAGATCTT+TGG 0.442205 1.2:+52058316 None:intergenic
GACTCGGTTATGAAGGATGC+TGG 0.449765 1.2:+52056970 None:intergenic
ATCTGGACTGGCCTACTAGA+TGG 0.452164 1.2:-52056227 MS.gene059023:CDS
TCCGAAATTCTCAAGGGTCT+CGG 0.462525 1.2:-52057180 MS.gene059023:CDS
TGAAACATGGAGGTGGTGTT+GGG 0.464979 1.2:+52058418 None:intergenic
GGAAGCAGAACAAACAATAG+TGG 0.475113 1.2:+52058299 None:intergenic
TCAGCTCTACAGCCAGGATA+AGG 0.479607 1.2:-52057341 MS.gene059023:intron
TCCAAAAGACTTTCTGTGAA+AGG 0.484014 1.2:+52056931 None:intergenic
AGGTGTATCCTCTGAGTCTC+CGG 0.484946 1.2:-52056646 MS.gene059023:CDS
CTTAAAAGACTCGGTTATGA+AGG 0.489119 1.2:+52056963 None:intergenic
TTGTTGCAAGTGCTTCTCTC+GGG 0.495810 1.2:-52057266 MS.gene059023:CDS
TGTTCTTCAGCTCTACAGCC+AGG 0.501870 1.2:-52057347 MS.gene059023:intron
GGTTATGAAGGATGCTGGGC+CGG 0.510643 1.2:+52056975 None:intergenic
ACCAAACGTTGTTAATGTCA+TGG 0.511914 1.2:+52058479 None:intergenic
CGAGTTCGTGGAAGTGGTGT+TGG 0.518858 1.2:-52056299 MS.gene059023:CDS
GAGAATTTCGGAAACTTCTG+AGG 0.522492 1.2:+52057191 None:intergenic
TAGGTATCTATCTCTACGCT+TGG 0.524939 1.2:-52056327 MS.gene059023:CDS
TCAGTCTCAAATTCCAAAGC+AGG 0.526917 1.2:+52056865 None:intergenic
TAGAACCTCACTCCTTATCC+TGG 0.528279 1.2:+52057329 None:intergenic
AAGGGTCTCGGCATTGACAT+TGG 0.530691 1.2:-52057168 MS.gene059023:CDS
GTTGTTCCATTAGTAACGGA+TGG 0.533720 1.2:-52056895 MS.gene059023:CDS
GAACATCCTAACTGCCCGAA+AGG 0.535459 1.2:+52057302 None:intergenic
GGCCTACTAGATGGCATGGA+TGG 0.537031 1.2:-52056218 MS.gene059023:CDS
AACATCCTAACTGCCCGAAA+GGG 0.537118 1.2:+52057303 None:intergenic
AGTTCCTCAAGACTCAGTTA+TGG 0.539436 1.2:-52058366 MS.gene059023:CDS
GATGGTCGAGTTCGTGGAAG+TGG 0.539978 1.2:-52056305 MS.gene059023:CDS
GAAACTTCTGAGGCTCGTGA+TGG 0.541777 1.2:+52057201 None:intergenic
TGCCATCCATGCCATCTAGT+AGG 0.546029 1.2:+52056216 None:intergenic
CCAAGAATGCACAAGAGGCT+CGG 0.547108 1.2:-52057101 MS.gene059023:CDS
CCATAGTCTCTTCCTTCTGG+TGG 0.547663 1.2:+52056816 None:intergenic
CCGGTAAAGGGAATCTGGAC+TGG 0.548399 1.2:-52056239 MS.gene059023:CDS
TCTTGTTGTTCCATTAGTAA+CGG 0.550298 1.2:-52056899 MS.gene059023:CDS
GACTGGCCTACTAGATGGCA+TGG 0.557924 1.2:-52056222 MS.gene059023:CDS
CAAAGCCAAGAATGCACAAG+AGG 0.560157 1.2:-52057106 MS.gene059023:CDS
GCTCGACTTGTAATATGTGC+CGG 0.560267 1.2:-52056994 MS.gene059023:CDS
AAGGAAGAGACTATGGCAGC+TGG 0.561092 1.2:-52056809 MS.gene059023:CDS
AGAAGTTTCCGAAATTCTCA+AGG 0.563263 1.2:-52057187 MS.gene059023:CDS
TTCACTGCGCTTAAAAGACT+CGG 0.565546 1.2:+52056954 None:intergenic
TATCTATCTCTACGCTTGGA+TGG 0.570017 1.2:-52056323 MS.gene059023:CDS
CGATGATTGTGGATGAAACA+TGG 0.572334 1.2:+52058405 None:intergenic
GAAGCAGAACAAACAATAGT+GGG 0.578711 1.2:+52058300 None:intergenic
TAAAATTGGTACGATGATTG+TGG 0.584880 1.2:+52058394 None:intergenic
GTGGTGTTGGTTATCCACCT+TGG 0.585801 1.2:-52056286 MS.gene059023:CDS
CAAAGCAACTTGCCACCAGA+AGG 0.586550 1.2:-52056828 MS.gene059023:CDS
ATTACTGTTAACTCATTGAG+AGG 0.589948 1.2:-52057021 MS.gene059023:CDS
ACTCGGTTATGAAGGATGCT+GGG 0.605181 1.2:+52056971 None:intergenic
AGAGGCTCGGCTCTCAAGAG+AGG 0.606803 1.2:-52057088 MS.gene059023:CDS
GAAGTTTCCGAAATTCTCAA+GGG 0.624267 1.2:-52057186 MS.gene059023:CDS
GTCCAGATTCCCTTTACCGG+CGG 0.627179 1.2:+52056242 None:intergenic
AGAAGCACTTGCAACAAAAG+CGG 0.630503 1.2:+52057272 None:intergenic
TGAGACTGAAGAGACTGATG+AGG 0.632957 1.2:-52056851 MS.gene059023:CDS
GAGGTGGTGTTGGGAGAGTG+AGG 0.635330 1.2:+52058427 None:intergenic
TTTCGTTGCACAATTACCGC+CGG 0.637674 1.2:-52056258 MS.gene059023:CDS
TACTTACACCGGAGACTCAG+AGG 0.639799 1.2:+52056638 None:intergenic
ATAGACATACTCGGACCACT+CGG 0.641066 1.2:+52056771 None:intergenic
TTGTGGATGAAACATGGAGG+TGG 0.644703 1.2:+52058411 None:intergenic
TACAGCCAGGATAAGGAGTG+AGG 0.659492 1.2:-52057334 MS.gene059023:CDS
TGTGCAACGAAAGCATTCCA+AGG 0.663502 1.2:+52056269 None:intergenic
GACATACTCGGACCACTCGG+AGG 0.696435 1.2:+52056774 None:intergenic
GTGACCATAACTGAGTCTTG+AGG 0.719771 1.2:+52058362 None:intergenic
CTCCAGTTATCACCTCCGAG+TGG 0.727203 1.2:-52056786 MS.gene059023:CDS
GCAACGAAAGCATTCCAAGG+TGG 0.729632 1.2:+52056272 None:intergenic
TGATTGTGGATGAAACATGG+AGG 0.830631 1.2:+52058408 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACTAAAATTTAGTTGATTTT+TGG + chr1.2:52056777-52056796 None:intergenic 15.0%
!!! ATTTTCTATTATTCAAACTT+AGG + chr1.2:52058201-52058220 None:intergenic 15.0%
!! AATCTAATTCTTCTCAAATT+AGG - chr1.2:52056416-52056435 MS.gene059023:intron 20.0%
!! AGAAGAATTAGATTGTTTAT+TGG + chr1.2:52056410-52056429 None:intergenic 20.0%
!! GAGGAAAAAATTAAAACAAT+TGG + chr1.2:52057978-52057997 None:intergenic 20.0%
!!! AAAATTTAGTTGATTTTTGG+TGG + chr1.2:52056774-52056793 None:intergenic 20.0%
!!! ATCTGTTTTCTTTTAAACAA+GGG - chr1.2:52058310-52058329 MS.gene059023:CDS 20.0%
!!! ATTTTTCACAAAACAAAAAG+AGG + chr1.2:52056456-52056475 None:intergenic 20.0%
!!! TATCTGTTTTCTTTTAAACA+AGG - chr1.2:52058309-52058328 MS.gene059023:CDS 20.0%
!!! TTAACATTTTAGCACTAATA+TGG + chr1.2:52058077-52058096 None:intergenic 20.0%
!!! TTGAGGTAATTGTTTTAATA+TGG - chr1.2:52056526-52056545 MS.gene059023:intron 20.0%
! AAAGATATGAAAATCGCAAA+CGG - chr1.2:52057029-52057048 MS.gene059023:CDS 25.0%
! AAGAAAACAGATACGAAAAA+CGG + chr1.2:52058302-52058321 None:intergenic 25.0%
! AGTGCAAATAATGTTATGTA+TGG + chr1.2:52056674-52056693 None:intergenic 25.0%
! GTTAGATGAACAAAAAAAGA+TGG - chr1.2:52058015-52058034 MS.gene059023:intron 25.0%
! TTCTAACAATTTCAATGTGT+AGG - chr1.2:52058339-52058358 MS.gene059023:CDS 25.0%
! TTCTTTAGCTGAAAAATTAG+AGG + chr1.2:52058114-52058133 None:intergenic 25.0%
!! TGTTTTGTGAAAAATGCTTT+TGG - chr1.2:52056461-52056480 MS.gene059023:intron 25.0%
!! TTTATATCTGCAATTTTGCT+TGG - chr1.2:52057157-52057176 MS.gene059023:CDS 25.0%
!!! AGAAGCATTGTTTTTTTCAT+TGG - chr1.2:52056889-52056908 MS.gene059023:CDS 25.0%
!!! CATGTTTTAGATTTAGTTTG+TGG - chr1.2:52056941-52056960 MS.gene059023:CDS 25.0%
AAATTTCCATCCGTTACTAA+TGG + chr1.2:52057799-52057818 None:intergenic 30.0%
AATATGGATAGTACTTACAC+CGG + chr1.2:52058061-52058080 None:intergenic 30.0%
ATAGCAATCTCACAACTAAT+TGG - chr1.2:52057448-52057467 MS.gene059023:intron 30.0%
ATTACTGTTAACTCATTGAG+AGG - chr1.2:52057664-52057683 MS.gene059023:intron 30.0%
CTAGAGTAGCATTCAATTAA+TGG - chr1.2:52056748-52056767 MS.gene059023:intron 30.0%
GAATACACAAGATTTGACAA+CGG + chr1.2:52058272-52058291 None:intergenic 30.0%
GGTAACACATAAAATGTAGT+AGG + chr1.2:52056819-52056838 None:intergenic 30.0%
TAAAATTGGTACGATGATTG+TGG + chr1.2:52056294-52056313 None:intergenic 30.0%
TGAGGAACTGAACATAAAAT+TGG + chr1.2:52056308-52056327 None:intergenic 30.0%
! ATCTAAAACATGTACACCAA+TGG + chr1.2:52056933-52056952 None:intergenic 30.0%
! CTGCATTCATTTGATTTCAA+AGG + chr1.2:52057224-52057243 None:intergenic 30.0%
! TTTTATCAGAATTCGAACCT+CGG + chr1.2:52056592-52056611 None:intergenic 30.0%
!! CTTTGTTGTCTCTAAAGTAT+AGG + chr1.2:52057564-52057583 None:intergenic 30.0%
!! TCTTGTTGTTCCATTAGTAA+CGG - chr1.2:52057786-52057805 MS.gene059023:intron 30.0%
!!! TTTTCCTCGTCTTGTTTAAT+AGG - chr1.2:52057990-52058009 MS.gene059023:intron 30.0%
AGAAGTTTCCGAAATTCTCA+AGG - chr1.2:52057498-52057517 MS.gene059023:intron 35.0%
ATTGGAGCAGTATCTTTGTT+TGG - chr1.2:52057535-52057554 MS.gene059023:intron 35.0%
GAAGCAGAACAAACAATAGT+GGG + chr1.2:52056388-52056407 None:intergenic 35.0%
GAAGTTTCCGAAATTCTCAA+GGG - chr1.2:52057499-52057518 MS.gene059023:intron 35.0%
GATGAACAAAAAAAGATGGC+AGG - chr1.2:52058019-52058038 MS.gene059023:intron 35.0%
TAACACACGGTATTTGATCA+CGG - chr1.2:52057053-52057072 MS.gene059023:CDS 35.0%
TAATATGGTTCCATTGACGA+GGG - chr1.2:52056541-52056560 MS.gene059023:intron 35.0%
TCCAAAAGACTTTCTGTGAA+AGG + chr1.2:52057757-52057776 None:intergenic 35.0%
TGTGTTGTCATAGACATACT+CGG + chr1.2:52057926-52057945 None:intergenic 35.0%
TTAATATGGTTCCATTGACG+AGG - chr1.2:52056540-52056559 MS.gene059023:intron 35.0%
TTTGTTACACTGAACTGTTG+AGG - chr1.2:52056509-52056528 MS.gene059023:intron 35.0%
! ACCTTTCACAGAAAGTCTTT+TGG - chr1.2:52057753-52057772 MS.gene059023:intron 35.0%
! CTTAAAAGACTCGGTTATGA+AGG + chr1.2:52057725-52057744 None:intergenic 35.0%
AATCGCAAACGGATAACACA+CGG - chr1.2:52057040-52057059 MS.gene059023:CDS 40.0%
ACCACCTATTAAACAAGACG+AGG + chr1.2:52057997-52058016 None:intergenic 40.0%
AGTTCCTCAAGACTCAGTTA+TGG - chr1.2:52056319-52056338 MS.gene059023:CDS 40.0%
CCAATGGTAAGAGAACAAGA+TGG + chr1.2:52056917-52056936 None:intergenic 40.0%
CCATCTTGTTCTCTTACCAT+TGG - chr1.2:52056914-52056933 MS.gene059023:CDS 40.0%
CGATGATTGTGGATGAAACA+TGG + chr1.2:52056283-52056302 None:intergenic 40.0%
CTTCTTATGGTTCTCATGTC+TGG - chr1.2:52056844-52056863 MS.gene059023:CDS 40.0%
GAGAATTTCGGAAACTTCTG+AGG + chr1.2:52057497-52057516 None:intergenic 40.0%
GGAAGCAGAACAAACAATAG+TGG + chr1.2:52056389-52056408 None:intergenic 40.0%
GGATAGCTCAATTGGTTGAA+GGG - chr1.2:52056566-52056585 MS.gene059023:intron 40.0%
GTCTGGCAAAGAATGAGATT+AGG - chr1.2:52056861-52056880 MS.gene059023:CDS 40.0%
GTGTTACCTCACTCTTCTTA+TGG - chr1.2:52056831-52056850 MS.gene059023:CDS 40.0%
TAGGTATCTATCTCTACGCT+TGG - chr1.2:52058358-52058377 MS.gene059023:CDS 40.0%
TAGTGGGAACAGAAGATCTT+TGG + chr1.2:52056372-52056391 None:intergenic 40.0%
TATCTATCTCTACGCTTGGA+TGG - chr1.2:52058362-52058381 MS.gene059023:CDS 40.0%
TCAGTCTCAAATTCCAAAGC+AGG + chr1.2:52057823-52057842 None:intergenic 40.0%
TGAGAACCATAAGAAGAGTG+AGG + chr1.2:52056840-52056859 None:intergenic 40.0%
TGATTGTGGATGAAACATGG+AGG + chr1.2:52056280-52056299 None:intergenic 40.0%
TGGATAGCTCAATTGGTTGA+AGG - chr1.2:52056565-52056584 MS.gene059023:intron 40.0%
TTCACTGCGCTTAAAAGACT+CGG + chr1.2:52057734-52057753 None:intergenic 40.0%
TTTGTTGCAAGTGCTTCTCT+CGG - chr1.2:52057418-52057437 MS.gene059023:intron 40.0%
! ACAGAAAGTCTTTTGGACAG+AGG - chr1.2:52057760-52057779 MS.gene059023:intron 40.0%
! GTTGTTCCATTAGTAACGGA+TGG - chr1.2:52057790-52057809 MS.gene059023:intron 40.0%
! TTCCCTTCCTTTTCTGCTTT+TGG - chr1.2:52057187-52057206 MS.gene059023:CDS 40.0%
!! AGAAGCACTTGCAACAAAAG+CGG + chr1.2:52057416-52057435 None:intergenic 40.0%
!! TCCCTTCCTTTTCTGCTTTT+GGG - chr1.2:52057188-52057207 MS.gene059023:CDS 40.0%
!! TCCTCGTCTTGTTTAATAGG+TGG - chr1.2:52057993-52058012 MS.gene059023:intron 40.0%
AACATCCTAACTGCCCGAAA+GGG + chr1.2:52057385-52057404 None:intergenic 45.0%
ACGGTATTTGATCACGGAGT+TGG - chr1.2:52057059-52057078 MS.gene059023:CDS 45.0%
ACTCGGTTATGAAGGATGCT+GGG + chr1.2:52057717-52057736 None:intergenic 45.0%
ATAGACATACTCGGACCACT+CGG + chr1.2:52057917-52057936 None:intergenic 45.0%
ATGAAACATGGAGGTGGTGT+TGG + chr1.2:52056271-52056290 None:intergenic 45.0%
CAAAGCCAAGAATGCACAAG+AGG - chr1.2:52057579-52057598 MS.gene059023:intron 45.0%
CCCCAAAAGCAGAAAAGGAA+GGG + chr1.2:52057192-52057211 None:intergenic 45.0%
CGGTATTTGATCACGGAGTT+GGG - chr1.2:52057060-52057079 MS.gene059023:CDS 45.0%
CTTTGCCCCAAAAGCAGAAA+AGG + chr1.2:52057197-52057216 None:intergenic 45.0%
GGATGGAAATTTGCCTGCTT+TGG - chr1.2:52057807-52057826 MS.gene059023:intron 45.0%
GTGACCATAACTGAGTCTTG+AGG + chr1.2:52056326-52056345 None:intergenic 45.0%
GTGAGGTTCTATCTCCCTTT+CGG - chr1.2:52057368-52057387 MS.gene059023:intron 45.0%
TAGAACCTCACTCCTTATCC+TGG + chr1.2:52057359-52057378 None:intergenic 45.0%
TCCGAAATTCTCAAGGGTCT+CGG - chr1.2:52057505-52057524 MS.gene059023:intron 45.0%
TGAAACATGGAGGTGGTGTT+GGG + chr1.2:52056270-52056289 None:intergenic 45.0%
TGAGACTGAAGAGACTGATG+AGG - chr1.2:52057834-52057853 MS.gene059023:intron 45.0%
TGAGGTTCTATCTCCCTTTC+GGG - chr1.2:52057369-52057388 MS.gene059023:intron 45.0%
TTGTGGATGAAACATGGAGG+TGG + chr1.2:52056277-52056296 None:intergenic 45.0%
TTGTTGCAAGTGCTTCTCTC+GGG - chr1.2:52057419-52057438 MS.gene059023:intron 45.0%
TTTCGTTGCACAATTACCGC+CGG - chr1.2:52058427-52058446 MS.gene059023:CDS 45.0%
! GATTGATGAAGCATCACTGC+AGG + chr1.2:52057302-52057321 None:intergenic 45.0%
! GCTCGACTTGTAATATGTGC+CGG - chr1.2:52057691-52057710 MS.gene059023:intron 45.0%
!! CCCTTCCTTTTCTGCTTTTG+GGG - chr1.2:52057189-52057208 MS.gene059023:CDS 45.0%
!! TGTGCAACGAAAGCATTCCA+AGG + chr1.2:52058419-52058438 None:intergenic 45.0%
AAGGAAGAGACTATGGCAGC+TGG - chr1.2:52057876-52057895 MS.gene059023:intron 50.0%
AGCTATCCAACCCTCGTCAA+TGG + chr1.2:52056554-52056573 None:intergenic 50.0%
AGGTGTATCCTCTGAGTCTC+CGG - chr1.2:52058039-52058058 MS.gene059023:intron 50.0%
ATGGTTCCATTGACGAGGGT+TGG - chr1.2:52056545-52056564 MS.gene059023:intron 50.0%
CAAAGCAACTTGCCACCAGA+AGG - chr1.2:52057857-52057876 MS.gene059023:intron 50.0%
CACTGCAGCCACTATGTAGT+CGG - chr1.2:52058221-52058240 MS.gene059023:intron 50.0%
CCAAGAATGCACAAGAGGCT+CGG - chr1.2:52057584-52057603 MS.gene059023:intron 50.0%
CCACCAGAAGGAAGAGACTA+TGG - chr1.2:52057869-52057888 MS.gene059023:intron 50.0%
CCAGTCCAGATTCCCTTTAC+CGG + chr1.2:52058449-52058468 None:intergenic 50.0%
CCATAGTCTCTTCCTTCTGG+TGG + chr1.2:52057872-52057891 None:intergenic 50.0%
CGAGGGTTGGATAGCTCAAT+TGG - chr1.2:52056558-52056577 MS.gene059023:intron 50.0%
CTGCCATAGTCTCTTCCTTC+TGG + chr1.2:52057875-52057894 None:intergenic 50.0%
CTTCGTCTCCGACTACATAG+TGG + chr1.2:52058232-52058251 None:intergenic 50.0%
GAACATCCTAACTGCCCGAA+AGG + chr1.2:52057386-52057405 None:intergenic 50.0%
GCACAATTACCGCCGGTAAA+GGG - chr1.2:52058434-52058453 MS.gene059023:CDS 50.0%
GCCCCAAAAGCAGAAAAGGA+AGG + chr1.2:52057193-52057212 None:intergenic 50.0%
GCCGAGACCCTTGAGAATTT+CGG + chr1.2:52057509-52057528 None:intergenic 50.0%
TACAGCCAGGATAAGGAGTG+AGG - chr1.2:52057351-52057370 MS.gene059023:intron 50.0%
TACTTACACCGGAGACTCAG+AGG + chr1.2:52058050-52058069 None:intergenic 50.0%
TATCTCCCTTTCGGGCAGTT+AGG - chr1.2:52057377-52057396 MS.gene059023:intron 50.0%
TCAGCTCTACAGCCAGGATA+AGG - chr1.2:52057344-52057363 MS.gene059023:intron 50.0%
TGCACAATTACCGCCGGTAA+AGG - chr1.2:52058433-52058452 MS.gene059023:CDS 50.0%
TGCCATCCATGCCATCTAGT+AGG + chr1.2:52058472-52058491 None:intergenic 50.0%
TGTAGTCGGAGACGAAGACA+CGG - chr1.2:52058235-52058254 MS.gene059023:intron 50.0%
TGTGCTCAAATCTCCGACTG+CGG - chr1.2:52057088-52057107 MS.gene059023:CDS 50.0%
TGTTCTTCAGCTCTACAGCC+AGG - chr1.2:52057338-52057357 MS.gene059023:CDS 50.0%
! GACTCGGTTATGAAGGATGC+TGG + chr1.2:52057718-52057737 None:intergenic 50.0%
!! AAGGGTCTCGGCATTGACAT+TGG - chr1.2:52057517-52057536 MS.gene059023:intron 50.0%
!! ATCTGGACTGGCCTACTAGA+TGG - chr1.2:52058458-52058477 MS.gene059023:CDS 50.0%
!! GAAACTTCTGAGGCTCGTGA+TGG + chr1.2:52057487-52057506 None:intergenic 50.0%
!! GCAACGAAAGCATTCCAAGG+TGG + chr1.2:52058416-52058435 None:intergenic 50.0%
!! GTGGTGTTGGTTATCCACCT+TGG - chr1.2:52058399-52058418 MS.gene059023:CDS 50.0%
CCGAGCCTCTTGTGCATTCT+TGG + chr1.2:52057587-52057606 None:intergenic 55.0%
CCGGTAAAGGGAATCTGGAC+TGG - chr1.2:52058446-52058465 MS.gene059023:CDS 55.0%
CGAGTTCGTGGAAGTGGTGT+TGG - chr1.2:52058386-52058405 MS.gene059023:CDS 55.0%
CTCAATTGGTTGAAGGGCCG+AGG - chr1.2:52056572-52056591 MS.gene059023:intron 55.0%
CTCCAGTTATCACCTCCGAG+TGG - chr1.2:52057899-52057918 MS.gene059023:intron 55.0%
GACCACTCGGAGGTGATAAC+TGG + chr1.2:52057904-52057923 None:intergenic 55.0%
GATGGTCGAGTTCGTGGAAG+TGG - chr1.2:52058380-52058399 MS.gene059023:CDS 55.0%
GGCCTACTAGATGGCATGGA+TGG - chr1.2:52058467-52058486 MS.gene059023:CDS 55.0%
GGTTATGAAGGATGCTGGGC+CGG + chr1.2:52057713-52057732 None:intergenic 55.0%
GTCCAGATTCCCTTTACCGG+CGG + chr1.2:52058446-52058465 None:intergenic 55.0%
TACCGCCGGTAAAGGGAATC+TGG - chr1.2:52058441-52058460 MS.gene059023:CDS 55.0%
TCAAATCTCCGACTGCGGAG+CGG - chr1.2:52057093-52057112 MS.gene059023:CDS 55.0%
!! GACTGGCCTACTAGATGGCA+TGG - chr1.2:52058463-52058482 MS.gene059023:CDS 55.0%
AGAGGCTCGGCTCTCAAGAG+AGG - chr1.2:52057597-52057616 MS.gene059023:intron 60.0%
CAAATCTCCGACTGCGGAGC+GGG - chr1.2:52057094-52057113 MS.gene059023:CDS 60.0%
CGCTTGGATGGTCGAGTTCG+TGG - chr1.2:52058374-52058393 MS.gene059023:CDS 60.0%
GACATACTCGGACCACTCGG+AGG + chr1.2:52057914-52057933 None:intergenic 60.0%
GTCGGAGACGAAGACACGGT+TGG - chr1.2:52058239-52058258 MS.gene059023:intron 60.0%
! GAGGTGGTGTTGGGAGAGTG+AGG + chr1.2:52056261-52056280 None:intergenic 60.0%
TATGCAGCCCGCTCCGCAGT+CGG + chr1.2:52057104-52057123 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 52056208 52058499 52056208 ID=MS.gene059023
chr1.2 mRNA 52056208 52058499 52056208 ID=MS.gene059023.t1;Parent=MS.gene059023
chr1.2 exon 52058270 52058499 52058270 ID=MS.gene059023.t1.exon1;Parent=MS.gene059023.t1
chr1.2 CDS 52058270 52058499 52058270 ID=cds.MS.gene059023.t1;Parent=MS.gene059023.t1
chr1.2 exon 52056781 52057359 52056781 ID=MS.gene059023.t1.exon2;Parent=MS.gene059023.t1
chr1.2 CDS 52056781 52057359 52056781 ID=cds.MS.gene059023.t1;Parent=MS.gene059023.t1
chr1.2 exon 52056645 52056695 52056645 ID=MS.gene059023.t1.exon3;Parent=MS.gene059023.t1
chr1.2 CDS 52056645 52056695 52056645 ID=cds.MS.gene059023.t1;Parent=MS.gene059023.t1
chr1.2 exon 52056208 52056346 52056208 ID=MS.gene059023.t1.exon4;Parent=MS.gene059023.t1
chr1.2 CDS 52056208 52056346 52056208 ID=cds.MS.gene059023.t1;Parent=MS.gene059023.t1
Gene Sequence

>MS.gene059023

ATGACATTAACAACGTTTGGTTCTACTTCTGCTAACTCTAACACTTTGTTCCTCACTCTCCCAACACCACCTCCATGTTTCATCCACAATCATCGTACCAATTTTATGTTCAGTTCCTCAAGACTCAGTTATGGTCACACTCACACTCTTTACTATTCTCACCAAAGATCTTCTGTTCCCACTATTGTTTGTTCTGCTTCCAATAAACAATCTAATTCTTCTCAAATTAGGTACACTTTTTCTCTCCTCTTTTTGTTTTGTGAAAAATGCTTTTGGTTATGATATGTTTATAGAATGTTGCTTTGTTACACTGAACTGTTGAGGTAATTGTTTTAATATGGTTCCATTGACGAGGGTTGGATAGCTCAATTGGTTGAAGGGCCGAGGTTCGAATTCTGATAAAAAAGAAAATATTGACATAACAGCTAATATATTAATAATTTTCTAGAGATACATGACATTACCATACATAACATTATTTGCACTATTTAACAAAATACAAATAGTATAGATCTATGAATTGATCATGAGAGTTGATGTCTAGAGTAGCATTCAATTAATGGCCACCAAAAATCAACTAAATTTTAGTTGTAAAGTTCAATTTTTTACCTACTACATTTTATGTGTTACCTCACTCTTCTTATGGTTCTCATGTCTGGCAAAGAATGAGATTAGGATCAAAGAAGCATTGTTTTTTTCATTGGAACCATCTTGTTCTCTTACCATTGGTGTACATGTTTTAGATTTAGTTTGTGGTAGAACATCAACATAGTTCAAAAGTAAAAAGATATGAAAATCGCAACGTCAAAAAAAAAAAAAAAAAAGATATGAAAATCGCAAACGGATAACACACGGTATTTGATCACGGAGTTGGGCTAATTGTGCTCAAATCTCCGACTGCGGAGCGGGCTGCATAATCAAGTTTCTGAACATAATATCATCATGAATCTTTATATCTGCAATTTTGCTTGGTTATTTTTTCCCTTCCTTTTCTGCTTTTGGGGCAAAGCAAACCTTTGAAATCAAATGAATGCAGAATTCACTAGAGTTTCTTTTCTTATATGTTCTTTTCTTTCATCAAGTTTTATTTTCCTGCAGTGATGCTTCATCAATCAATCATTAATCATATTTGTTCTTCAGCTCTACAGCCAGGATAAGGAGTGAGGTTCTATCTCCCTTTCGGGCAGTTAGGATGTTCTTTTACACCGCTTTTGTTGCAAGTGCTTCTCTCGGGACACTCATAGCAATCTCACAACTAATTGGTGCACTGTCTAATCCATCACGAGCCTCAGAAGTTTCCGAAATTCTCAAGGGTCTCGGCATTGACATTGGAGCAGTATCTTTGTTTGGTTTCCTATACTTTAGAGACAACAAAGCCAAGAATGCACAAGAGGCTCGGCTCTCAAGAGAGGAATTTTTGTCAAATCTTAAGCTACGTGTGAGCGAGAAGAAGATCATTACTGTTAACTCATTGAGAGGAATTGCTCGACTTGTAATATGTGCCGGCCCAGCATCCTTCATAACCGAGTCTTTTAAGCGCAGTGAACCTTTCACAGAAAGTCTTTTGGACAGAGGAGTTCTTGTTGTTCCATTAGTAACGGATGGAAATTTGCCTGCTTTGGAATTTGAGACTGAAGAGACTGATGAGGCAAAGCAACTTGCCACCAGAAGGAAGAGACTATGGCAGCTGGCTCCAGTTATCACCTCCGAGTGGTCCGAGTATGTCTATGACAACACAAAGTTTTATATGCAATCGAAATTGTTTTTCCAATTGTTTTAATTTTTTCCTCGTCTTGTTTAATAGGTGGTTAGATGAACAAAAAAAGATGGCAGGTGTATCCTCTGAGTCTCCGGTGTAAGTACTATCCATATTAGTGCTAAAATGTTAAATGTGTAGATATCTCCTCTAATTTTTCAGCTAAAGAAAATATACACGATAGAAAATTCTATCAAGAAATTGTAGTATTTAAACACGATTTGTAATCTGTAACCTAAGTTTGAATAATAGAAAATCACTGCAGCCACTATGTAGTCGGAGACGAAGACACGGTTGGTCTAACTCCGTTGTCAAATCTTGTGTATTCTCTATTTCCGTTTTTCGTATCTGTTTTCTTTTAAACAAGGGTTGTTGTTCTAACAATTTCAATGTGTAGGTATCTATCTCTACGCTTGGATGGTCGAGTTCGTGGAAGTGGTGTTGGTTATCCACCTTGGAATGCTTTCGTTGCACAATTACCGCCGGTAAAGGGAATCTGGACTGGCCTACTAGATGGCATGGATGGCAGAGTTTAG

Protein sequence

>MS.gene059023.t1

MTLTTFGSTSANSNTLFLTLPTPPPCFIHNHRTNFMFSSSRLSYGHTHTLYYSHQRSSVPTIVCSASNKQSNSSQISSTARIRSEVLSPFRAVRMFFYTAFVASASLGTLIAISQLIGALSNPSRASEVSEILKGLGIDIGAVSLFGFLYFRDNKAKNAQEARLSREEFLSNLKLRVSEKKIITVNSLRGIARLVICAGPASFITESFKRSEPFTESLLDRGVLVVPLVTDGNLPALEFETEETDEAKQLATRRKRLWQLAPVITSEWSEWLDEQKKMAGVSSESPVYLSLRLDGRVRGSGVGYPPWNAFVAQLPPVKGIWTGLLDGMDGRV