Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064407.t1 | XP_003600913.1 | 88.8 | 276 | 31 | 0 | 1 | 276 | 1 | 276 | 1.80E-136 | 495.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064407.t1 | Q54GB2 | 33.7 | 199 | 110 | 6 | 71 | 269 | 390 | 566 | 2.3e-20 | 100.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064407.t1 | G7JBB2 | 88.8 | 276 | 31 | 0 | 1 | 276 | 1 | 276 | 1.3e-136 | 495.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049267 | MS.gene064407 | 0.812012 | 5.25E-51 | -1.69E-46 |
| MS.gene052917 | MS.gene064407 | 0.811676 | 6.22E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064407.t1 | MTR_3g070810 | 94.203 | 276 | 16 | 0 | 1 | 276 | 1 | 276 | 0.0 | 518 |
| MS.gene064407.t1 | MTR_5g082660 | 69.072 | 291 | 71 | 4 | 4 | 276 | 13 | 302 | 1.14e-136 | 388 |
| MS.gene064407.t1 | MTR_2g049420 | 35.122 | 205 | 108 | 8 | 64 | 265 | 150 | 332 | 2.23e-22 | 94.7 |
| MS.gene064407.t1 | MTR_2g049420 | 35.122 | 205 | 108 | 8 | 64 | 265 | 287 | 469 | 8.09e-22 | 94.7 |
| MS.gene064407.t1 | MTR_2g049420 | 35.122 | 205 | 108 | 8 | 64 | 265 | 278 | 460 | 8.70e-22 | 94.7 |
| MS.gene064407.t1 | MTR_3g006690 | 36.269 | 193 | 100 | 6 | 70 | 261 | 294 | 464 | 1.72e-21 | 94.0 |
| MS.gene064407.t1 | MTR_5g045920 | 37.857 | 140 | 83 | 4 | 127 | 265 | 162 | 298 | 3.34e-21 | 91.3 |
| MS.gene064407.t1 | MTR_2g017810 | 34.000 | 200 | 104 | 7 | 33 | 226 | 66 | 243 | 1.82e-19 | 86.3 |
| MS.gene064407.t1 | MTR_3g085400 | 35.669 | 157 | 76 | 6 | 68 | 222 | 320 | 453 | 2.68e-16 | 79.0 |
| MS.gene064407.t1 | MTR_3g085395 | 34.320 | 169 | 87 | 8 | 68 | 235 | 198 | 343 | 5.33e-16 | 77.4 |
| MS.gene064407.t1 | MTR_5g095530 | 27.160 | 162 | 105 | 5 | 120 | 270 | 199 | 358 | 5.37e-13 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064407.t1 | AT3G55960 | 57.534 | 292 | 99 | 3 | 3 | 273 | 12 | 299 | 1.33e-118 | 342 |
| MS.gene064407.t1 | AT1G29780 | 37.209 | 172 | 87 | 6 | 70 | 240 | 48 | 199 | 3.63e-22 | 92.0 |
| MS.gene064407.t1 | AT1G29770 | 36.076 | 158 | 82 | 6 | 70 | 226 | 101 | 240 | 7.14e-21 | 89.7 |
| MS.gene064407.t1 | AT5G45700 | 36.709 | 158 | 80 | 5 | 71 | 227 | 97 | 235 | 1.81e-20 | 88.6 |
| MS.gene064407.t1 | AT5G46410 | 34.848 | 198 | 104 | 7 | 70 | 265 | 282 | 456 | 7.35e-20 | 89.0 |
| MS.gene064407.t1 | AT5G46410 | 34.848 | 198 | 104 | 7 | 70 | 265 | 279 | 453 | 8.96e-20 | 89.0 |
| MS.gene064407.t1 | AT5G46410 | 34.848 | 198 | 104 | 7 | 70 | 265 | 279 | 453 | 8.96e-20 | 89.0 |
| MS.gene064407.t1 | AT5G11860 | 32.161 | 199 | 110 | 7 | 68 | 265 | 110 | 284 | 2.95e-19 | 85.9 |
| MS.gene064407.t1 | AT5G11860 | 32.161 | 199 | 110 | 7 | 68 | 265 | 110 | 284 | 2.95e-19 | 85.9 |
| MS.gene064407.t1 | AT5G11860 | 32.161 | 199 | 110 | 7 | 68 | 265 | 110 | 284 | 2.95e-19 | 85.9 |
| MS.gene064407.t1 | AT5G11860 | 32.161 | 199 | 110 | 7 | 68 | 265 | 110 | 284 | 2.95e-19 | 85.9 |
| MS.gene064407.t1 | AT5G11860 | 32.161 | 199 | 110 | 7 | 68 | 265 | 110 | 284 | 2.95e-19 | 85.9 |
| MS.gene064407.t1 | AT4G18140 | 35.294 | 204 | 104 | 9 | 66 | 263 | 258 | 439 | 3.68e-19 | 87.0 |
| MS.gene064407.t1 | AT4G18140 | 35.437 | 206 | 105 | 9 | 66 | 265 | 258 | 441 | 4.75e-19 | 86.7 |
| MS.gene064407.t1 | AT4G18140 | 35.437 | 206 | 105 | 9 | 66 | 265 | 258 | 441 | 4.75e-19 | 86.7 |
| MS.gene064407.t1 | AT4G18140 | 35.437 | 206 | 105 | 9 | 66 | 265 | 258 | 441 | 4.75e-19 | 86.7 |
| MS.gene064407.t1 | AT4G18140 | 35.644 | 202 | 102 | 9 | 66 | 261 | 258 | 437 | 5.04e-19 | 86.7 |
| MS.gene064407.t1 | AT4G18140 | 35.644 | 202 | 102 | 9 | 66 | 261 | 258 | 437 | 5.04e-19 | 86.7 |
| MS.gene064407.t1 | AT1G55900 | 29.054 | 148 | 98 | 5 | 129 | 272 | 214 | 358 | 7.55e-14 | 71.2 |
| MS.gene064407.t1 | AT1G55900 | 29.333 | 150 | 96 | 6 | 129 | 271 | 214 | 360 | 8.81e-14 | 70.9 |
Find 51 sgRNAs with CRISPR-Local
Find 153 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACTGAAGCTGGTTTAAAT+TGG | 0.237910 | 3.4:-70295119 | MS.gene064407:CDS |
| ACGGTAACATAATTGATTAT+TGG | 0.292172 | 3.4:+70294968 | None:intergenic |
| CCTTGTTGTTGAAACCATTC+AGG | 0.294861 | 3.4:+70294181 | None:intergenic |
| CTGTTTACTGCTGGTGTTGA+AGG | 0.307010 | 3.4:-70294884 | MS.gene064407:intron |
| CTTCGAATCTTTATCAACTT+TGG | 0.317855 | 3.4:-70297051 | MS.gene064407:CDS |
| GAACTTTCAATGTTGTCAAC+TGG | 0.329311 | 3.4:+70294147 | None:intergenic |
| TTCCATGCTTGCTGAGTTAT+CGG | 0.380800 | 3.4:+70297176 | None:intergenic |
| TCAGAGAGGTCCTTGAGAAT+TGG | 0.383199 | 3.4:+70294247 | None:intergenic |
| TGTGGTTGCCCTGCCGAAAA+TGG | 0.385800 | 3.4:+70294387 | None:intergenic |
| GTTGAAACCATTCAGGCATA+TGG | 0.407970 | 3.4:+70294188 | None:intergenic |
| GACCTGGTTCTGTTTACTGC+TGG | 0.433896 | 3.4:-70294893 | MS.gene064407:CDS |
| GATAAAGTCTTAGACTAAAC+CGG | 0.442575 | 3.4:+70294723 | None:intergenic |
| ACTTACGTGCGAATTGTTGA+AGG | 0.453162 | 3.4:+70294698 | None:intergenic |
| CAATGTTGTCAACTGGGAGC+TGG | 0.455252 | 3.4:+70294154 | None:intergenic |
| AATGCAGTGTTGAGTTGGTT+TGG | 0.459476 | 3.4:-70297155 | MS.gene064407:CDS |
| ACGCATGGAATTCCATTGTC+AGG | 0.466339 | 3.4:+70294411 | None:intergenic |
| GAATGTTTACAGCGAACATC+GGG | 0.473162 | 3.4:-70294520 | MS.gene064407:intron |
| CTGTAAGAATTCTTTCAACC+CGG | 0.483581 | 3.4:+70294934 | None:intergenic |
| TTAGAAGACAAAGAAAGTAA+AGG | 0.493231 | 3.4:+70297080 | None:intergenic |
| AAAACTCAAGCAACTGAAGC+TGG | 0.501522 | 3.4:-70295129 | MS.gene064407:CDS |
| CGAATGTGTATTTGATAACA+AGG | 0.501985 | 3.4:-70295088 | MS.gene064407:intron |
| ACAGAATAGACACAGAAAAC+CGG | 0.506252 | 3.4:-70294742 | MS.gene064407:CDS |
| AAAAGTACCATATGCCTGAA+TGG | 0.506457 | 3.4:-70294195 | MS.gene064407:CDS |
| CACCGATAACTCAGCAAGCA+TGG | 0.520246 | 3.4:-70297178 | MS.gene064407:CDS |
| ACTTAGCGAATTTGCTGACC+TGG | 0.523387 | 3.4:-70294909 | MS.gene064407:CDS |
| TCAGATTATTGGATTATTCG+CGG | 0.532005 | 3.4:-70297111 | MS.gene064407:CDS |
| CATGGAATGCAGTGTTGAGT+TGG | 0.538178 | 3.4:-70297160 | MS.gene064407:CDS |
| TTACCGTCTTTGAACGCCCC+GGG | 0.545253 | 3.4:-70294952 | MS.gene064407:CDS |
| AACTTTCAATGTTGTCAACT+GGG | 0.548122 | 3.4:+70294148 | None:intergenic |
| TGTTATTCTTCCAATTCTCA+AGG | 0.548938 | 3.4:-70294257 | MS.gene064407:CDS |
| GTGTCTATTCTGTCAACAAG+TGG | 0.560392 | 3.4:+70294752 | None:intergenic |
| CACCAGCAGTAAACAGAACC+AGG | 0.563248 | 3.4:+70294891 | None:intergenic |
| CCTGAATGGTTTCAACAACA+AGG | 0.567337 | 3.4:-70294181 | MS.gene064407:CDS |
| CAAAGTTGATAAAGATTCGA+AGG | 0.576408 | 3.4:+70297052 | None:intergenic |
| CAACCCGGGGCGTTCAAAGA+CGG | 0.577044 | 3.4:+70294949 | None:intergenic |
| GTTACCGTCTTTGAACGCCC+CGG | 0.583545 | 3.4:-70294953 | MS.gene064407:CDS |
| GTTCAGATCATTGAGGATGC+CGG | 0.586130 | 3.4:-70297014 | MS.gene064407:CDS |
| TGAATGTTTACAGCGAACAT+CGG | 0.593168 | 3.4:-70294521 | MS.gene064407:intron |
| TTTGAAGGTAGTGCTTGACT+TGG | 0.593890 | 3.4:-70295202 | MS.gene064407:intron |
| TGTGTCTTCAAGGAAGCAGA+TGG | 0.610039 | 3.4:-70294995 | MS.gene064407:intron |
| TTATGCACCTGTGTGTCATG+TGG | 0.614397 | 3.4:+70294369 | None:intergenic |
| GTAAGAATTCTTTCAACCCG+GGG | 0.614560 | 3.4:+70294936 | None:intergenic |
| TGTAAGAATTCTTTCAACCC+GGG | 0.615409 | 3.4:+70294935 | None:intergenic |
| CCTGCCGAAAATGGTACGCA+TGG | 0.615551 | 3.4:+70294396 | None:intergenic |
| CTGAATGGTTTCAACAACAA+GGG | 0.619469 | 3.4:-70294180 | MS.gene064407:CDS |
| AGGGCAACCACATGACACAC+AGG | 0.634058 | 3.4:-70294376 | MS.gene064407:intron |
| AGATCTTACATGCATAACAA+AGG | 0.638747 | 3.4:-70294487 | MS.gene064407:CDS |
| ATCCTCAATGATCTGAACAG+CGG | 0.670300 | 3.4:+70297019 | None:intergenic |
| TAACATCTTTCTGTTCAGAG+AGG | 0.673989 | 3.4:+70294233 | None:intergenic |
| ATCCGCTGTTCAGATCATTG+AGG | 0.682726 | 3.4:-70297021 | MS.gene064407:CDS |
| GCAACCGCCACAAAAGCTCA+CGG | 0.691045 | 3.4:-70296988 | MS.gene064407:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CAATTTAACTTTATTTTATT+AGG | - | chr3.4:70294753-70294772 | MS.gene064407:CDS | 10.0% |
| !! | AAAATATTAAATCTTCACAT+GGG | - | chr3.4:70296324-70296343 | MS.gene064407:intron | 15.0% |
| !! | TAAAATATTAAATCTTCACA+TGG | - | chr3.4:70296323-70296342 | MS.gene064407:intron | 15.0% |
| !! | AACCAATAAACAAAAAACAA+TGG | + | chr3.4:70294407-70294426 | None:intergenic | 20.0% |
| !! | AATAAACAAAAAACAATGGA+AGG | + | chr3.4:70294403-70294422 | None:intergenic | 20.0% |
| !! | AATTAAGTGTTTATCCAAAT+AGG | - | chr3.4:70294780-70294799 | MS.gene064407:intron | 20.0% |
| !! | ACAAAAGCTATACTAAAAAT+CGG | + | chr3.4:70295738-70295757 | None:intergenic | 20.0% |
| !! | ATCAGAATTTACATTAAGAA+TGG | + | chr3.4:70296113-70296132 | None:intergenic | 20.0% |
| !! | ATGGTAAGTAAAAAATCATA+TGG | + | chr3.4:70297031-70297050 | None:intergenic | 20.0% |
| !! | ATTATTCTATAAATTCTCAC+AGG | - | chr3.4:70296562-70296581 | MS.gene064407:intron | 20.0% |
| !! | CATAACAAAGACAAAAAAAA+TGG | + | chr3.4:70297050-70297069 | None:intergenic | 20.0% |
| !! | TAAGAAGAAAAAATAGTTTG+TGG | - | chr3.4:70294459-70294478 | MS.gene064407:CDS | 20.0% |
| !! | TAGAATATGTATATTGAACT+TGG | + | chr3.4:70296752-70296771 | None:intergenic | 20.0% |
| !! | TATTTACAAATTCTCTCAAA+CGG | + | chr3.4:70294645-70294664 | None:intergenic | 20.0% |
| !! | TCAGAATTTACATTAAGAAT+GGG | + | chr3.4:70296112-70296131 | None:intergenic | 20.0% |
| !! | TTGTATAAATTCACAGAATT+AGG | - | chr3.4:70295560-70295579 | MS.gene064407:intron | 20.0% |
| !!! | AATAGTTTGTGGAAATATTA+TGG | - | chr3.4:70294470-70294489 | MS.gene064407:CDS | 20.0% |
| !!! | AGTTTCTTTTGAGATATATT+TGG | - | chr3.4:70294879-70294898 | MS.gene064407:intron | 20.0% |
| !!! | CAAATATTTTCTCAGATTAT+TGG | - | chr3.4:70294225-70294244 | MS.gene064407:CDS | 20.0% |
| !!! | CTATAGTTATATCATTGTTT+TGG | - | chr3.4:70295616-70295635 | MS.gene064407:intron | 20.0% |
| !!! | TAATATTTTATCAGAAGACA+AGG | + | chr3.4:70296313-70296332 | None:intergenic | 20.0% |
| !!! | TATTATGGTTTTATGTTCAT+TGG | - | chr3.4:70294485-70294504 | MS.gene064407:CDS | 20.0% |
| !!! | TGTTTTTTGTTTATTGGTTA+TGG | - | chr3.4:70294408-70294427 | MS.gene064407:CDS | 20.0% |
| !!! | TTCCATTGTTTTTTGTTTAT+TGG | - | chr3.4:70294402-70294421 | MS.gene064407:CDS | 20.0% |
| ! | AAATCACCAATAGTCTAATT+TGG | - | chr3.4:70295797-70295816 | MS.gene064407:intron | 25.0% |
| ! | ACGGTAACATAATTGATTAT+TGG | + | chr3.4:70296382-70296401 | None:intergenic | 25.0% |
| ! | ATCAGAGAAACAATTAACAA+AGG | + | chr3.4:70296728-70296747 | None:intergenic | 25.0% |
| ! | CTTCAAAAAAATTGTTCACT+CGG | + | chr3.4:70295918-70295937 | None:intergenic | 25.0% |
| ! | GAGAATTTGTAAATAGCTTA+TGG | - | chr3.4:70294650-70294669 | MS.gene064407:intron | 25.0% |
| ! | GGGAAAGGAAAAAAAAAAAA+AGG | - | chr3.4:70294828-70294847 | MS.gene064407:intron | 25.0% |
| ! | TAACTAAAATCACGTTTCAA+TGG | - | chr3.4:70295332-70295351 | MS.gene064407:intron | 25.0% |
| ! | TGGGAAATTCATAATTAAAC+TGG | + | chr3.4:70296093-70296112 | None:intergenic | 25.0% |
| ! | TGTATACCAAATTAGACTAT+TGG | + | chr3.4:70295806-70295825 | None:intergenic | 25.0% |
| ! | TTAGAAGACAAAGAAAGTAA+AGG | + | chr3.4:70294270-70294289 | None:intergenic | 25.0% |
| ! | TTCAAAAAAATTGTTCACTC+GGG | + | chr3.4:70295917-70295936 | None:intergenic | 25.0% |
| ! | TTGATAGATTCTAGCATAAT+TGG | + | chr3.4:70295366-70295385 | None:intergenic | 25.0% |
| !! | GCAATTTTCATAAGTTATCT+TGG | + | chr3.4:70294715-70294734 | None:intergenic | 25.0% |
| !! | TCATTTGTATGTTACTGTTT+TGG | - | chr3.4:70295882-70295901 | MS.gene064407:intron | 25.0% |
| !!! | TGAACAATTTTTTTGAAGCA+AGG | - | chr3.4:70295920-70295939 | MS.gene064407:intron | 25.0% |
| AAGCTATACTAAAAATCGGT+AGG | + | chr3.4:70295734-70295753 | None:intergenic | 30.0% | |
| AGATCTTACATGCATAACAA+AGG | - | chr3.4:70296860-70296879 | MS.gene064407:intron | 30.0% | |
| AGGTTGCAATAAAAAGCTAT+AGG | + | chr3.4:70296919-70296938 | None:intergenic | 30.0% | |
| CTTCGAATCTTTATCAACTT+TGG | - | chr3.4:70294296-70294315 | MS.gene064407:intron | 30.0% | |
| GATAAAGTCTTAGACTAAAC+CGG | + | chr3.4:70296627-70296646 | None:intergenic | 30.0% | |
| GGTTGCAATAAAAAGCTATA+GGG | + | chr3.4:70296918-70296937 | None:intergenic | 30.0% | |
| TAAACTGGAACAAAAGATCT+AGG | + | chr3.4:70296078-70296097 | None:intergenic | 30.0% | |
| TAACAAAGGACTAGAAAGAA+AGG | + | chr3.4:70296714-70296733 | None:intergenic | 30.0% | |
| TATTCCCATCTTCTTAATGA+CGG | - | chr3.4:70296770-70296789 | MS.gene064407:intron | 30.0% | |
| TCAGATTATTGGATTATTCG+CGG | - | chr3.4:70294236-70294255 | MS.gene064407:CDS | 30.0% | |
| TGTTATTCTTCCAATTCTCA+AGG | - | chr3.4:70297090-70297109 | MS.gene064407:CDS | 30.0% | |
| ! | AGATCTAGGATTGCAAATAA+AGG | + | chr3.4:70296064-70296083 | None:intergenic | 30.0% |
| ! | CATTGTAACTATCACAGTTT+TGG | - | chr3.4:70294916-70294935 | MS.gene064407:CDS | 30.0% |
| ! | CGAATGTGTATTTGATAACA+AGG | - | chr3.4:70296259-70296278 | MS.gene064407:intron | 30.0% |
| ! | GGTTGATATCAATTTCCAAA+AGG | + | chr3.4:70297010-70297029 | None:intergenic | 30.0% |
| ! | TGTTTCATGTTTGGTTTCTA+TGG | + | chr3.4:70295168-70295187 | None:intergenic | 30.0% |
| ! | TTTTTATTGCAACCTGACAA+TGG | - | chr3.4:70296924-70296943 | MS.gene064407:intron | 30.0% |
| !! | CAAAGTTGATAAAGATTCGA+AGG | + | chr3.4:70294298-70294317 | None:intergenic | 30.0% |
| !! | CATAAAGAGTGTCATTCTTT+AGG | - | chr3.4:70296023-70296042 | MS.gene064407:intron | 30.0% |
| AAAATTGTTCACTCGGGTAT+TGG | + | chr3.4:70295911-70295930 | None:intergenic | 35.0% | |
| AAACCAAACACACACTTGTA+GGG | - | chr3.4:70295387-70295406 | MS.gene064407:intron | 35.0% | |
| ACAGAATAGACACAGAAAAC+CGG | - | chr3.4:70296605-70296624 | MS.gene064407:intron | 35.0% | |
| ATAGCTTATGGCATGTTCAT+AGG | - | chr3.4:70294662-70294681 | MS.gene064407:intron | 35.0% | |
| CTACATACATAGGTCCTATT+TGG | + | chr3.4:70294797-70294816 | None:intergenic | 35.0% | |
| CTGAATGGTTTCAACAACAA+GGG | - | chr3.4:70297167-70297186 | MS.gene064407:CDS | 35.0% | |
| CTGTAAGAATTCTTTCAACC+CGG | + | chr3.4:70296416-70296435 | None:intergenic | 35.0% | |
| TAACATCTTTCTGTTCAGAG+AGG | + | chr3.4:70297117-70297136 | None:intergenic | 35.0% | |
| TAGATGCACATTAAGATGTG+TGG | + | chr3.4:70295217-70295236 | None:intergenic | 35.0% | |
| TCATCCGTCATTAAGAAGAT+GGG | + | chr3.4:70296777-70296796 | None:intergenic | 35.0% | |
| TGAATGTTTACAGCGAACAT+CGG | - | chr3.4:70296826-70296845 | MS.gene064407:intron | 35.0% | |
| TGCAAGAAATAAACACCACT+GGG | - | chr3.4:70295467-70295486 | MS.gene064407:intron | 35.0% | |
| TGCTACATGTGTTTCATGTT+TGG | + | chr3.4:70295177-70295196 | None:intergenic | 35.0% | |
| TGTAAGAATTCTTTCAACCC+GGG | + | chr3.4:70296415-70296434 | None:intergenic | 35.0% | |
| TTCATCCGTCATTAAGAAGA+TGG | + | chr3.4:70296778-70296797 | None:intergenic | 35.0% | |
| TTGCAAGAAATAAACACCAC+TGG | - | chr3.4:70295466-70295485 | MS.gene064407:intron | 35.0% | |
| ! | AATTCCATGCGTACCATTTT+CGG | - | chr3.4:70296947-70296966 | MS.gene064407:intron | 35.0% |
| ! | CAACTGAAGCTGGTTTAAAT+TGG | - | chr3.4:70296228-70296247 | MS.gene064407:intron | 35.0% |
| ! | GGTGCATAAATTCATCCTTT+TGG | - | chr3.4:70296992-70297011 | MS.gene064407:CDS | 35.0% |
| ! | TTGCCTCTCATAGTGTTTTT+GGG | - | chr3.4:70294950-70294969 | MS.gene064407:CDS | 35.0% |
| ! | TTTGAAACAATTGCACCAGA+AGG | + | chr3.4:70295435-70295454 | None:intergenic | 35.0% |
| !! | AAAAGTACCATATGCCTGAA+TGG | - | chr3.4:70297152-70297171 | MS.gene064407:CDS | 35.0% |
| !! | ACTTGTTGTCAGTCAAATTG+AGG | - | chr3.4:70295137-70295156 | MS.gene064407:CDS | 35.0% |
| !! | GTAACTATCACAGTTTTGGT+TGG | - | chr3.4:70294920-70294939 | MS.gene064407:CDS | 35.0% |
| !!! | ATTGTTTTGGCTTCTTACGA+TGG | - | chr3.4:70295629-70295648 | MS.gene064407:intron | 35.0% |
| !!! | GTTTTATGCTGCTTTGATCA+TGG | - | chr3.4:70294541-70294560 | MS.gene064407:intron | 35.0% |
| AAAACTCAAGCAACTGAAGC+TGG | - | chr3.4:70296218-70296237 | MS.gene064407:intron | 40.0% | |
| ACTTACGTGCGAATTGTTGA+AGG | + | chr3.4:70296652-70296671 | None:intergenic | 40.0% | |
| ATCCTCAATGATCTGAACAG+CGG | + | chr3.4:70294331-70294350 | None:intergenic | 40.0% | |
| ATGGGAATGTTGTGTCTTCA+AGG | - | chr3.4:70296342-70296361 | MS.gene064407:intron | 40.0% | |
| ATGTGTTAGTGTTAGATGCG+AGG | - | chr3.4:70294509-70294528 | MS.gene064407:CDS | 40.0% | |
| CACATTAAGATGTGTGGATG+CGG | + | chr3.4:70295211-70295230 | None:intergenic | 40.0% | |
| CCTGAATGGTTTCAACAACA+AGG | - | chr3.4:70297166-70297185 | MS.gene064407:CDS | 40.0% | |
| GAAAATATGGCAGTTCCTTC+TGG | - | chr3.4:70295417-70295436 | MS.gene064407:intron | 40.0% | |
| GAAACCAAACACACACTTGT+AGG | - | chr3.4:70295386-70295405 | MS.gene064407:intron | 40.0% | |
| GAATGTTTACAGCGAACATC+GGG | - | chr3.4:70296827-70296846 | MS.gene064407:intron | 40.0% | |
| GATCTCACGTATGCATTTGA+AGG | - | chr3.4:70296130-70296149 | MS.gene064407:intron | 40.0% | |
| GTAAGAATTCTTTCAACCCG+GGG | + | chr3.4:70296414-70296433 | None:intergenic | 40.0% | |
| GTGTCTATTCTGTCAACAAG+TGG | + | chr3.4:70296598-70296617 | None:intergenic | 40.0% | |
| GTTGAAACCATTCAGGCATA+TGG | + | chr3.4:70297162-70297181 | None:intergenic | 40.0% | |
| TCACCCAAAAACACTATGAG+AGG | + | chr3.4:70294956-70294975 | None:intergenic | 40.0% | |
| TTTGAAGGTAGTGCTTGACT+TGG | - | chr3.4:70296145-70296164 | MS.gene064407:intron | 40.0% | |
| ! | ATACATACCGTGAGCTTTTG+TGG | + | chr3.4:70294369-70294388 | None:intergenic | 40.0% |
| ! | CTTGCCTCTCATAGTGTTTT+TGG | - | chr3.4:70294949-70294968 | MS.gene064407:CDS | 40.0% |
| ! | TGTTAGATGCGAGGTTTGTT+AGG | - | chr3.4:70294518-70294537 | MS.gene064407:intron | 40.0% |
| ! | TTCCATGCTTGCTGAGTTAT+CGG | + | chr3.4:70294174-70294193 | None:intergenic | 40.0% |
| !! | AATGCAGTGTTGAGTTGGTT+TGG | - | chr3.4:70294192-70294211 | MS.gene064407:CDS | 40.0% |
| !! | ATGGCTTTAGTGCAGGTTTA+CGG | - | chr3.4:70294560-70294579 | MS.gene064407:intron | 40.0% |
| !! | CCTTGTTGTTGAAACCATTC+AGG | + | chr3.4:70297169-70297188 | None:intergenic | 40.0% |
| !! | GTTAGATGCGAGGTTTGTTA+GGG | - | chr3.4:70294519-70294538 | MS.gene064407:intron | 40.0% |
| !! | TTTGATCATGGCTTTAGTGC+AGG | - | chr3.4:70294553-70294572 | MS.gene064407:intron | 40.0% |
| AAGCCCTACAAGTGTGTGTT+TGG | + | chr3.4:70295393-70295412 | None:intergenic | 45.0% | |
| ACGCATGGAATTCCATTGTC+AGG | + | chr3.4:70296939-70296958 | None:intergenic | 45.0% | |
| ATCCGCTGTTCAGATCATTG+AGG | - | chr3.4:70294326-70294345 | MS.gene064407:intron | 45.0% | |
| ATGTATGTAGTGCGTGGTAG+AGG | - | chr3.4:70294807-70294826 | MS.gene064407:intron | 45.0% | |
| CTACCACGCACTACATACAT+AGG | + | chr3.4:70294807-70294826 | None:intergenic | 45.0% | |
| GTAGGGCTTGTCGGAAAATA+TGG | - | chr3.4:70295404-70295423 | MS.gene064407:intron | 45.0% | |
| GTTCAGATCATTGAGGATGC+CGG | - | chr3.4:70294333-70294352 | MS.gene064407:intron | 45.0% | |
| TCAGAGAGGTCCTTGAGAAT+TGG | + | chr3.4:70297103-70297122 | None:intergenic | 45.0% | |
| TGTATGTAGTGCGTGGTAGA+GGG | - | chr3.4:70294808-70294827 | MS.gene064407:intron | 45.0% | |
| TGTGTCTTCAAGGAAGCAGA+TGG | - | chr3.4:70296352-70296371 | MS.gene064407:intron | 45.0% | |
| TTATGCACCTGTGTGTCATG+TGG | + | chr3.4:70296981-70297000 | None:intergenic | 45.0% | |
| ! | ACCACTGGGCATATTTTGTG+AGG | - | chr3.4:70295481-70295500 | MS.gene064407:intron | 45.0% |
| ! | CATGGAATGCAGTGTTGAGT+TGG | - | chr3.4:70294187-70294206 | MS.gene064407:CDS | 45.0% |
| ! | CCACTGGGCATATTTTGTGA+GGG | - | chr3.4:70295482-70295501 | MS.gene064407:intron | 45.0% |
| ! | CTGTTTACTGCTGGTGTTGA+AGG | - | chr3.4:70296463-70296482 | MS.gene064407:intron | 45.0% |
| ! | GCTACTAGTTGTAGCTTGTG+CGG | - | chr3.4:70295248-70295267 | MS.gene064407:intron | 45.0% |
| !! | ACTTAGCGAATTTGCTGACC+TGG | - | chr3.4:70296438-70296457 | MS.gene064407:intron | 45.0% |
| !! | TGGCTTTAGTGCAGGTTTAC+GGG | - | chr3.4:70294561-70294580 | MS.gene064407:intron | 45.0% |
| CACACACTTGTAGGGCTTGT+CGG | - | chr3.4:70295395-70295414 | MS.gene064407:intron | 50.0% | |
| CACCAGCAGTAAACAGAACC+AGG | + | chr3.4:70296459-70296478 | None:intergenic | 50.0% | |
| CACCGATAACTCAGCAAGCA+TGG | - | chr3.4:70294169-70294188 | MS.gene064407:CDS | 50.0% | |
| CAGAGCTCAACTACGTTACG+CGG | - | chr3.4:70295991-70296010 | MS.gene064407:intron | 50.0% | |
| CATCTGTCTCAAACTGCGAC+AGG | + | chr3.4:70295305-70295324 | None:intergenic | 50.0% | |
| CCCTCACAAAATATGCCCAG+TGG | + | chr3.4:70295485-70295504 | None:intergenic | 50.0% | |
| CTTGTGCGGTGAGAAGCTTT+GGG | - | chr3.4:70295262-70295281 | MS.gene064407:intron | 50.0% | |
| GGACCTATGTATGTAGTGCG+TGG | - | chr3.4:70294801-70294820 | MS.gene064407:intron | 50.0% | |
| TGCAGGTTTACGGGTCTGTT+TGG | - | chr3.4:70294570-70294589 | MS.gene064407:intron | 50.0% | |
| ! | CATACCGTGAGCTTTTGTGG+CGG | + | chr3.4:70294366-70294385 | None:intergenic | 50.0% |
| ! | CATGCGTACCATTTTCGGCA+GGG | - | chr3.4:70296952-70296971 | MS.gene064407:intron | 50.0% |
| ! | CGCAGTTTGAGACAGATGTG+TGG | - | chr3.4:70295307-70295326 | MS.gene064407:intron | 50.0% |
| !! | AAGCTTTGGGACGCGAGAAA+TGG | - | chr3.4:70295275-70295294 | MS.gene064407:intron | 50.0% |
| !! | GACCTGGTTCTGTTTACTGC+TGG | - | chr3.4:70296454-70296473 | MS.gene064407:intron | 50.0% |
| AGGGCAACCACATGACACAC+AGG | - | chr3.4:70296971-70296990 | MS.gene064407:intron | 55.0% | |
| CCTGCCGAAAATGGTACGCA+TGG | + | chr3.4:70296954-70296973 | None:intergenic | 55.0% | |
| CGCGTAACGTAGTTGAGCTC+TGG | + | chr3.4:70295993-70296012 | None:intergenic | 55.0% | |
| GCAACCGCCACAAAAGCTCA+CGG | - | chr3.4:70294359-70294378 | MS.gene064407:intron | 55.0% | |
| GCTTGTGCGGTGAGAAGCTT+TGG | - | chr3.4:70295261-70295280 | MS.gene064407:intron | 55.0% | |
| GTAGTGCGTGGTAGAGGGAA+AGG | - | chr3.4:70294813-70294832 | MS.gene064407:intron | 55.0% | |
| GTTACCGTCTTTGAACGCCC+CGG | - | chr3.4:70296394-70296413 | MS.gene064407:intron | 55.0% | |
| TGTGGTTGCCCTGCCGAAAA+TGG | + | chr3.4:70296963-70296982 | None:intergenic | 55.0% | |
| TTACCGTCTTTGAACGCCCC+GGG | - | chr3.4:70296395-70296414 | MS.gene064407:intron | 55.0% | |
| ! | CCATGCGTACCATTTTCGGC+AGG | - | chr3.4:70296951-70296970 | MS.gene064407:intron | 55.0% |
| ! | CTTTTGTGGCGGTTGCTGAC+CGG | + | chr3.4:70294355-70294374 | None:intergenic | 55.0% |
| ! | CAACCCGGGGCGTTCAAAGA+CGG | + | chr3.4:70296401-70296420 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 70294162 | 70297207 | 70294162 | ID=MS.gene064407 |
| chr3.4 | mRNA | 70294162 | 70297207 | 70294162 | ID=MS.gene064407.t1;Parent=MS.gene064407 |
| chr3.4 | exon | 70296989 | 70297207 | 70296989 | ID=MS.gene064407.t1.exon1;Parent=MS.gene064407.t1 |
| chr3.4 | CDS | 70296989 | 70297207 | 70296989 | ID=cds.MS.gene064407.t1;Parent=MS.gene064407.t1 |
| chr3.4 | exon | 70295089 | 70295217 | 70295089 | ID=MS.gene064407.t1.exon2;Parent=MS.gene064407.t1 |
| chr3.4 | CDS | 70295089 | 70295217 | 70295089 | ID=cds.MS.gene064407.t1;Parent=MS.gene064407.t1 |
| chr3.4 | exon | 70294885 | 70295005 | 70294885 | ID=MS.gene064407.t1.exon3;Parent=MS.gene064407.t1 |
| chr3.4 | CDS | 70294885 | 70295005 | 70294885 | ID=cds.MS.gene064407.t1;Parent=MS.gene064407.t1 |
| chr3.4 | exon | 70294704 | 70294785 | 70294704 | ID=MS.gene064407.t1.exon4;Parent=MS.gene064407.t1 |
| chr3.4 | CDS | 70294704 | 70294785 | 70294704 | ID=cds.MS.gene064407.t1;Parent=MS.gene064407.t1 |
| chr3.4 | exon | 70294377 | 70294530 | 70294377 | ID=MS.gene064407.t1.exon5;Parent=MS.gene064407.t1 |
| chr3.4 | CDS | 70294377 | 70294530 | 70294377 | ID=cds.MS.gene064407.t1;Parent=MS.gene064407.t1 |
| chr3.4 | exon | 70294162 | 70294287 | 70294162 | ID=MS.gene064407.t1.exon6;Parent=MS.gene064407.t1 |
| chr3.4 | CDS | 70294162 | 70294287 | 70294162 | ID=cds.MS.gene064407.t1;Parent=MS.gene064407.t1 |
| Gene Sequence |
| Protein sequence |
