Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049267.t1 | XP_003602643.2 | 97.5 | 405 | 10 | 0 | 1 | 405 | 7 | 411 | 1.70E-196 | 695.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049267.t1 | Q8RX26 | 72.2 | 331 | 86 | 3 | 78 | 405 | 13 | 340 | 1.5e-135 | 484.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049267.t1 | A0A072VBP5 | 97.5 | 405 | 10 | 0 | 1 | 405 | 24 | 428 | 1.3e-196 | 695.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049267 | MS.gene058840 | 0.817185 | 3.76E-52 | -1.69E-46 |
| MS.gene049267 | MS.gene063364 | 0.84395 | 1.02E-58 | -1.69E-46 |
| MS.gene049267 | MS.gene06381 | 0.83205 | 1.18E-55 | -1.69E-46 |
| MS.gene049267 | MS.gene064407 | 0.812012 | 5.25E-51 | -1.69E-46 |
| MS.gene049267 | MS.gene068043 | 0.815613 | 8.45E-52 | -1.69E-46 |
| MS.gene049267 | MS.gene068297 | 0.817339 | 3.47E-52 | -1.69E-46 |
| MS.gene049267 | MS.gene073173 | 0.870975 | 9.72E-67 | -1.69E-46 |
| MS.gene049267 | MS.gene07591 | 0.802435 | 5.62E-49 | -1.69E-46 |
| MS.gene049267 | MS.gene24974 | 0.821241 | 4.48E-53 | -1.69E-46 |
| MS.gene049267 | MS.gene27827 | 0.816826 | 4.53E-52 | -1.69E-46 |
| MS.gene049267 | MS.gene35546 | 0.811524 | 6.71E-51 | -1.69E-46 |
| MS.gene049267 | MS.gene37192 | 0.810698 | 1.01E-50 | -1.69E-46 |
| MS.gene049267 | MS.gene48401 | -0.810508 | 1.11E-50 | -1.69E-46 |
| MS.gene049267 | MS.gene56009 | 0.802266 | 6.09E-49 | -1.69E-46 |
| MS.gene049267 | MS.gene59006 | 0.809467 | 1.87E-50 | -1.69E-46 |
| MS.gene049267 | MS.gene62114 | 0.811069 | 8.42E-51 | -1.69E-46 |
| MS.gene049267 | MS.gene65287 | 0.802769 | 4.79E-49 | -1.69E-46 |
| MS.gene049267 | MS.gene69215 | 0.82304 | 1.72E-53 | -1.69E-46 |
| MS.gene049267 | MS.gene69718 | -0.804159 | 2.47E-49 | -1.69E-46 |
| MS.gene049267 | MS.gene71904 | 0.816163 | 6.37E-52 | -1.69E-46 |
| MS.gene049267 | MS.gene75396 | 0.817715 | 2.86E-52 | -1.69E-46 |
| MS.gene049267 | MS.gene87888 | -0.80359 | 3.24E-49 | -1.69E-46 |
| MS.gene049267 | MS.gene97500 | 0.818816 | 1.61E-52 | -1.69E-46 |
| MS.gene049267 | MS.gene99674 | -0.802154 | 6.42E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049267.t1 | MTR_3g096520 | 95.844 | 409 | 17 | 0 | 1 | 409 | 24 | 432 | 0.0 | 821 |
| MS.gene049267.t1 | MTR_3g096520 | 95.844 | 409 | 17 | 0 | 1 | 409 | 7 | 415 | 0.0 | 820 |
| MS.gene049267.t1 | MTR_3g096520 | 95.599 | 409 | 17 | 1 | 1 | 409 | 7 | 414 | 0.0 | 815 |
| MS.gene049267.t1 | MTR_3g086520 | 61.126 | 373 | 121 | 5 | 56 | 404 | 71 | 443 | 8.21e-155 | 446 |
| MS.gene049267.t1 | MTR_3g086520 | 61.126 | 373 | 121 | 5 | 56 | 404 | 68 | 440 | 1.04e-154 | 445 |
| MS.gene049267.t1 | MTR_3g086520 | 61.126 | 373 | 121 | 5 | 56 | 404 | 71 | 443 | 1.20e-154 | 445 |
| MS.gene049267.t1 | MTR_6g021730 | 58.919 | 370 | 114 | 3 | 69 | 404 | 94 | 459 | 1.74e-153 | 443 |
| MS.gene049267.t1 | MTR_3g075530 | 61.605 | 349 | 115 | 3 | 71 | 404 | 64 | 408 | 3.48e-153 | 440 |
| MS.gene049267.t1 | MTR_7g033100 | 64.179 | 335 | 111 | 4 | 79 | 404 | 84 | 418 | 4.05e-153 | 441 |
| MS.gene049267.t1 | MTR_8g089670 | 59.392 | 362 | 131 | 3 | 57 | 404 | 89 | 448 | 6.82e-151 | 436 |
| MS.gene049267.t1 | MTR_2g063857 | 61.027 | 331 | 120 | 2 | 74 | 404 | 67 | 388 | 4.27e-143 | 414 |
| MS.gene049267.t1 | MTR_7g033100 | 69.203 | 276 | 85 | 0 | 79 | 354 | 84 | 359 | 5.40e-143 | 413 |
| MS.gene049267.t1 | MTR_2g063907 | 60.542 | 332 | 119 | 2 | 73 | 404 | 52 | 371 | 2.21e-140 | 407 |
| MS.gene049267.t1 | MTR_6g092020 | 59.701 | 335 | 118 | 4 | 74 | 404 | 46 | 367 | 6.89e-140 | 405 |
| MS.gene049267.t1 | MTR_2g063843 | 60.423 | 331 | 116 | 3 | 74 | 404 | 59 | 374 | 1.57e-139 | 404 |
| MS.gene049267.t1 | MTR_8g447220 | 59.654 | 347 | 126 | 4 | 61 | 404 | 43 | 378 | 9.12e-136 | 395 |
| MS.gene049267.t1 | MTR_2g063857 | 65.141 | 284 | 97 | 1 | 74 | 357 | 67 | 348 | 3.12e-134 | 390 |
| MS.gene049267.t1 | MTR_6g092100 | 65.836 | 281 | 92 | 2 | 77 | 357 | 4 | 280 | 1.24e-133 | 385 |
| MS.gene049267.t1 | MTR_8g447220 | 66.065 | 277 | 90 | 1 | 61 | 337 | 43 | 315 | 3.04e-126 | 367 |
| MS.gene049267.t1 | MTR_7g081160 | 57.377 | 244 | 99 | 3 | 98 | 337 | 10 | 252 | 9.16e-88 | 276 |
| MS.gene049267.t1 | MTR_7g081170 | 67.089 | 158 | 48 | 2 | 131 | 287 | 83 | 237 | 3.79e-74 | 231 |
| MS.gene049267.t1 | MTR_2g063877 | 51.351 | 111 | 41 | 2 | 154 | 264 | 3 | 100 | 1.20e-28 | 109 |
| MS.gene049267.t1 | MTR_8g096190 | 32.121 | 330 | 166 | 16 | 33 | 336 | 279 | 576 | 4.76e-22 | 99.0 |
| MS.gene049267.t1 | MTR_1g048160 | 30.375 | 293 | 151 | 12 | 81 | 351 | 319 | 580 | 3.51e-20 | 93.2 |
| MS.gene049267.t1 | MTR_8g096190 | 32.323 | 297 | 153 | 14 | 33 | 306 | 279 | 550 | 5.04e-20 | 92.4 |
| MS.gene049267.t1 | MTR_8g096190 | 31.481 | 270 | 148 | 11 | 33 | 289 | 279 | 524 | 1.93e-19 | 90.9 |
| MS.gene049267.t1 | MTR_7g114130 | 31.365 | 271 | 133 | 12 | 81 | 329 | 323 | 562 | 8.02e-19 | 89.0 |
| MS.gene049267.t1 | MTR_7g114100 | 30.797 | 276 | 141 | 11 | 73 | 329 | 149 | 393 | 1.65e-18 | 87.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049267.t1 | AT5G63970 | 70.029 | 347 | 98 | 3 | 66 | 409 | 1 | 344 | 4.80e-180 | 506 |
| MS.gene049267.t1 | AT5G63970 | 70.029 | 347 | 98 | 3 | 66 | 409 | 1 | 344 | 4.80e-180 | 506 |
| MS.gene049267.t1 | AT3G01650 | 61.823 | 351 | 122 | 3 | 62 | 404 | 116 | 462 | 1.71e-154 | 446 |
| MS.gene049267.t1 | AT3G01650 | 61.823 | 351 | 122 | 3 | 62 | 404 | 116 | 462 | 1.71e-154 | 446 |
| MS.gene049267.t1 | AT5G14420 | 59.218 | 358 | 123 | 2 | 67 | 404 | 87 | 441 | 5.82e-150 | 433 |
| MS.gene049267.t1 | AT5G14420 | 59.218 | 358 | 123 | 2 | 67 | 404 | 87 | 441 | 5.82e-150 | 433 |
| MS.gene049267.t1 | AT5G14420 | 59.218 | 358 | 123 | 2 | 67 | 404 | 87 | 441 | 5.82e-150 | 433 |
| MS.gene049267.t1 | AT5G14420 | 59.218 | 358 | 123 | 2 | 67 | 404 | 87 | 441 | 5.82e-150 | 433 |
| MS.gene049267.t1 | AT1G67800 | 56.201 | 379 | 147 | 4 | 40 | 404 | 33 | 406 | 3.43e-144 | 417 |
| MS.gene049267.t1 | AT1G67800 | 56.201 | 379 | 147 | 4 | 40 | 404 | 33 | 406 | 3.43e-144 | 417 |
| MS.gene049267.t1 | AT1G67800 | 56.201 | 379 | 147 | 4 | 40 | 404 | 33 | 406 | 3.43e-144 | 417 |
| MS.gene049267.t1 | AT1G67800 | 56.201 | 379 | 147 | 4 | 40 | 404 | 33 | 406 | 3.43e-144 | 417 |
| MS.gene049267.t1 | AT1G67800 | 56.201 | 379 | 147 | 4 | 40 | 404 | 53 | 426 | 8.69e-144 | 417 |
| MS.gene049267.t1 | AT1G79380 | 57.500 | 360 | 140 | 3 | 48 | 404 | 24 | 373 | 1.75e-141 | 409 |
| MS.gene049267.t1 | AT1G67800 | 61.321 | 318 | 115 | 2 | 40 | 354 | 53 | 365 | 8.56e-136 | 395 |
| MS.gene049267.t1 | AT1G24545 | 45.872 | 109 | 21 | 1 | 117 | 225 | 46 | 116 | 1.15e-23 | 97.4 |
| MS.gene049267.t1 | AT5G61910 | 30.545 | 275 | 131 | 13 | 102 | 353 | 1109 | 1346 | 1.04e-19 | 92.4 |
| MS.gene049267.t1 | AT5G61900 | 30.545 | 275 | 131 | 13 | 102 | 353 | 341 | 578 | 2.41e-19 | 90.5 |
| MS.gene049267.t1 | AT5G61900 | 30.545 | 275 | 131 | 13 | 102 | 353 | 341 | 578 | 2.41e-19 | 90.5 |
| MS.gene049267.t1 | AT5G07300 | 32.530 | 249 | 122 | 12 | 102 | 329 | 344 | 567 | 6.71e-19 | 89.4 |
| MS.gene049267.t1 | AT1G08860 | 30.400 | 250 | 126 | 10 | 102 | 329 | 344 | 567 | 4.87e-18 | 86.7 |
Find 100 sgRNAs with CRISPR-Local
Find 232 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCAAATTCTGTTTCCTTCT+TGG | 0.060815 | 3.3:-80011645 | None:intergenic |
| TTATCCTCTCTCAATTATTT+TGG | 0.184417 | 3.3:+80011031 | MS.gene049267:CDS |
| GCGCGTATTTGACAACTTTC+AGG | 0.205094 | 3.3:+80011112 | MS.gene049267:CDS |
| CATCAACCTTCTTCTTATAC+TGG | 0.227724 | 3.3:+80008841 | MS.gene049267:CDS |
| AATCCGAAGGACATGGCTTT+TGG | 0.260692 | 3.3:+80012067 | MS.gene049267:CDS |
| TTCTTCTTATACTGGGAGTT+TGG | 0.282403 | 3.3:+80008849 | MS.gene049267:CDS |
| GATAATCTGATACCATGTTT+TGG | 0.290225 | 3.3:+80009822 | MS.gene049267:CDS |
| ATGGAGATTGCTTGCTCATA+TGG | 0.297924 | 3.3:-80009768 | None:intergenic |
| CACTTTGACGATAACATTAC+TGG | 0.306302 | 3.3:+80011089 | MS.gene049267:CDS |
| ACCTGTCCACTCATTGCTTT+TGG | 0.308835 | 3.3:-80009607 | None:intergenic |
| AGACAGAGTCCGGCCAATTA+TGG | 0.312266 | 3.3:-80009787 | None:intergenic |
| ATTTGCGCTTGCTGCCCTTA+TGG | 0.316033 | 3.3:+80011661 | MS.gene049267:CDS |
| TGCTTTGAGAGAAGCTGGTT+TGG | 0.319024 | 3.3:+80009551 | MS.gene049267:CDS |
| ACTGAACTCCCATCATAATT+AGG | 0.320439 | 3.3:-80008805 | None:intergenic |
| GAGCAAGCAATCTCCATAAT+TGG | 0.320653 | 3.3:+80009774 | MS.gene049267:CDS |
| TCAATTGCTGCATCAATTAC+AGG | 0.330436 | 3.3:-80010680 | None:intergenic |
| TCTTCTTATACCGGAAGTTC+GGG | 0.334270 | 3.3:+80008895 | MS.gene049267:CDS |
| CTCTTCTTATACCGGAAGTT+CGG | 0.338394 | 3.3:+80008894 | MS.gene049267:CDS |
| AGCCGACAATTTCAGCTCAT+TGG | 0.359139 | 3.3:+80009002 | MS.gene049267:CDS |
| GTTAGTATTCCCCGAACTTC+CGG | 0.363457 | 3.3:-80008905 | None:intergenic |
| CGGAAGAGCCTTCATCATAT+TGG | 0.365540 | 3.3:+80009732 | MS.gene049267:CDS |
| CTTCGGATTTGTTAGACAAA+TGG | 0.368918 | 3.3:-80012053 | None:intergenic |
| TTCGGATTTGTTAGACAAAT+GGG | 0.372915 | 3.3:-80012052 | None:intergenic |
| GAATCTTCAAATTTGATACT+TGG | 0.376948 | 3.3:+80009573 | MS.gene049267:CDS |
| TCGTGATCTATTATTTCCTT+AGG | 0.377030 | 3.3:-80011852 | None:intergenic |
| ATTGCTTGCTCATATGGATT+AGG | 0.378072 | 3.3:-80009762 | None:intergenic |
| AATGTACCTTGCAGCAATTA+TGG | 0.383001 | 3.3:-80010932 | None:intergenic |
| CCATGACAAACTCTATTATC+AGG | 0.398725 | 3.3:-80009973 | None:intergenic |
| GTTTCTGCTTTGAGAGAAGC+TGG | 0.409122 | 3.3:+80009546 | MS.gene049267:CDS |
| CAATTTCAGCTCATTGGATC+AGG | 0.420851 | 3.3:+80009008 | MS.gene049267:CDS |
| GTAATGGTTGCTTGTTCTTG+TGG | 0.423780 | 3.3:-80010907 | None:intergenic |
| TCTATTATTTCCTTAGGTGG+TGG | 0.431746 | 3.3:-80011846 | None:intergenic |
| ATTCCACATTTGAAACTGTC+AGG | 0.434663 | 3.3:+80010030 | MS.gene049267:CDS |
| AGCTTTCCATGCGGCGTACC+AGG | 0.440711 | 3.3:-80010880 | None:intergenic |
| TGTCATTATTGCTGATGGAC+AGG | 0.443974 | 3.3:+80010739 | MS.gene049267:CDS |
| TCTGCACTGGCTGGAGCTGT+TGG | 0.447629 | 3.3:-80011924 | None:intergenic |
| CTATTATTTCCTTAGGTGGT+GGG | 0.465035 | 3.3:-80011845 | None:intergenic |
| TGTGCTGCCCGGTACTGAAA+TGG | 0.465356 | 3.3:-80011689 | None:intergenic |
| GTTCTTGTCATTATTGCTGA+TGG | 0.466502 | 3.3:+80010734 | MS.gene049267:CDS |
| CCCCAGGTTACTAGAAATCC+TGG | 0.468853 | 3.3:+80010862 | MS.gene049267:intron |
| CAACACCCTCCTAATTATGA+TGG | 0.471709 | 3.3:+80008796 | MS.gene049267:CDS |
| TGGAGATTCCATTTCAGTAC+CGG | 0.474482 | 3.3:+80011681 | MS.gene049267:CDS |
| CATCCAAAAGCCATGTCCTT+CGG | 0.479435 | 3.3:-80012070 | None:intergenic |
| ATCTTCACATGCTACAAGTT+CGG | 0.483413 | 3.3:+80008939 | MS.gene049267:CDS |
| ATAAGAAGAGGGTTGATCAT+AGG | 0.486114 | 3.3:-80008881 | None:intergenic |
| ATCCAATGAGCTGAAATTGT+CGG | 0.486210 | 3.3:-80009004 | None:intergenic |
| ATTTCCTTAGGTGGTGGGAG+AGG | 0.495075 | 3.3:-80011840 | None:intergenic |
| CATCAAAAGTAGACAGAGTC+CGG | 0.497235 | 3.3:-80009797 | None:intergenic |
| TGATCTATTATTTCCTTAGG+TGG | 0.501463 | 3.3:-80011849 | None:intergenic |
| TGCAGCAATTATGGAAGTAA+TGG | 0.506063 | 3.3:-80010923 | None:intergenic |
| CATACTGGTTCTGCACTGGC+TGG | 0.522210 | 3.3:-80011933 | None:intergenic |
| GATCAACCCTCTTCTTATAC+CGG | 0.529411 | 3.3:+80008886 | MS.gene049267:CDS |
| ATCAACCTTCTTCTTATACT+GGG | 0.532895 | 3.3:+80008842 | MS.gene049267:CDS |
| AAGACCTCTCCCACCACCTA+AGG | 0.533866 | 3.3:+80011836 | MS.gene049267:CDS |
| CAATTGCTGCATCAATTACA+GGG | 0.538242 | 3.3:-80010679 | None:intergenic |
| ACCAAAAGCAATGAGTGGAC+AGG | 0.538547 | 3.3:+80009606 | MS.gene049267:CDS |
| CTGAAATGGAATCTCCATAA+GGG | 0.542289 | 3.3:-80011675 | None:intergenic |
| AGAAATCCTGGTACGCCGCA+TGG | 0.545259 | 3.3:+80010874 | MS.gene049267:CDS |
| ATTACAGGGGCAAATGAAGT+TGG | 0.548560 | 3.3:-80010665 | None:intergenic |
| ACTGAAATGGAATCTCCATA+AGG | 0.550689 | 3.3:-80011676 | None:intergenic |
| AAACTCCCAGTATAAGAAGA+AGG | 0.556963 | 3.3:-80008847 | None:intergenic |
| CATCATAATTAGGAGGGTGT+TGG | 0.562931 | 3.3:-80008795 | None:intergenic |
| TAGGTAAGTATTCGTTCCAT+CGG | 0.563326 | 3.3:+80009712 | MS.gene049267:intron |
| TAGCATGTGAAGATGATTGA+TGG | 0.566183 | 3.3:-80008930 | None:intergenic |
| GAACTCCCATCATAATTAGG+AGG | 0.569731 | 3.3:-80008802 | None:intergenic |
| CCTGATAATAGAGTTTGTCA+TGG | 0.570822 | 3.3:+80009973 | MS.gene049267:CDS |
| GAGCCCTTCCAATATGATGA+AGG | 0.570882 | 3.3:-80009740 | None:intergenic |
| GGAGATTCCATTTCAGTACC+GGG | 0.571735 | 3.3:+80011682 | MS.gene049267:CDS |
| AGAGCCTTCATCATATTGGA+AGG | 0.572099 | 3.3:+80009736 | MS.gene049267:CDS |
| AAGTGCTTCATCTCGTCCCA+TGG | 0.572627 | 3.3:-80011071 | None:intergenic |
| AAATTGTCGGCTATATATGC+TGG | 0.574282 | 3.3:-80008991 | None:intergenic |
| AAGCAATCTCCATAATTGGC+CGG | 0.575523 | 3.3:+80009778 | MS.gene049267:CDS |
| GAAACATACTGGTTCTGCAC+TGG | 0.575744 | 3.3:-80011937 | None:intergenic |
| TCTAACAAATCCGAAGGACA+TGG | 0.577510 | 3.3:+80012060 | MS.gene049267:CDS |
| TATGATGAAGGCTCTTCCGA+TGG | 0.578630 | 3.3:-80009728 | None:intergenic |
| GAATCGAAATTTGTTATGCG+TGG | 0.586429 | 3.3:-80011894 | None:intergenic |
| CGAACTTCCGGTATAAGAAG+AGG | 0.587264 | 3.3:-80008893 | None:intergenic |
| TTGGAGTTGGAGATGGACCA+TGG | 0.589444 | 3.3:+80011054 | MS.gene049267:CDS |
| ATTTCACCAAAAGCAATGAG+TGG | 0.597202 | 3.3:+80009601 | MS.gene049267:CDS |
| AACACCCTCCTAATTATGAT+GGG | 0.599452 | 3.3:+80008797 | MS.gene049267:CDS |
| GAACTTCCGGTATAAGAAGA+GGG | 0.604425 | 3.3:-80008892 | None:intergenic |
| AACTCCCATCATAATTAGGA+GGG | 0.620871 | 3.3:-80008801 | None:intergenic |
| ACTTTGACGATAACATTACT+GGG | 0.621667 | 3.3:+80011090 | MS.gene049267:CDS |
| TGATGCAGCAATTGACATTG+TGG | 0.622992 | 3.3:+80010688 | MS.gene049267:CDS |
| TCGGATTTGTTAGACAAATG+GGG | 0.624504 | 3.3:-80012051 | None:intergenic |
| GACATTGTGGAACGAAACAA+CGG | 0.625993 | 3.3:+80010701 | MS.gene049267:CDS |
| CCATCACCAAACCCAAAACA+TGG | 0.626028 | 3.3:-80009834 | None:intergenic |
| AAACCTGACAGTTTCAAATG+TGG | 0.629100 | 3.3:-80010033 | None:intergenic |
| AAAGATCATGTCTGAGAACA+CGG | 0.629668 | 3.3:+80011616 | MS.gene049267:CDS |
| TGGAGTTGGAGATGGACCAT+GGG | 0.631244 | 3.3:+80011055 | MS.gene049267:CDS |
| CTGGTTGCTTGTTATGACGA+TGG | 0.637709 | 3.3:-80008972 | None:intergenic |
| TTACTTCCATAATTGCTGCA+AGG | 0.643987 | 3.3:+80010926 | MS.gene049267:CDS |
| CCAACCAAAATAATTGAGAG+AGG | 0.646003 | 3.3:-80011035 | None:intergenic |
| GAGCCTTCATCATATTGGAA+GGG | 0.649815 | 3.3:+80009737 | MS.gene049267:CDS |
| GAACACGGAAGCATCCAAGA+AGG | 0.652615 | 3.3:+80011631 | MS.gene049267:CDS |
| CATTTGTCTAACAAATCCGA+AGG | 0.659505 | 3.3:+80012054 | MS.gene049267:CDS |
| CTTCTTATACCGGAAGTTCG+GGG | 0.677113 | 3.3:+80008896 | MS.gene049267:CDS |
| CATGTGAAGATGATTGATGG+TGG | 0.687554 | 3.3:-80008927 | None:intergenic |
| TGTGGACTAAGCTTTCCATG+CGG | 0.719964 | 3.3:-80010889 | None:intergenic |
| AATTGCTGCATCAATTACAG+GGG | 0.724712 | 3.3:-80010678 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATCCTAATATTTATTATT+AGG | - | chr3.3:80010342-80010361 | None:intergenic | 10.0% |
| !! | CATAAAAAAATAAAAAATAG+AGG | - | chr3.3:80012471-80012490 | None:intergenic | 10.0% |
| !! | TAATCCTAATAATAAATATT+AGG | + | chr3.3:80010335-80010354 | MS.gene049267:intron | 10.0% |
| !!! | TTAAAATTTCATTCTTTTTA+CGG | - | chr3.3:80012237-80012256 | None:intergenic | 10.0% |
| !! | AAACTACAGAAATTATAAAA+TGG | - | chr3.3:80011585-80011604 | None:intergenic | 15.0% |
| !! | GCATTATAATTTATTGTATA+CGG | + | chr3.3:80010147-80010166 | MS.gene049267:intron | 15.0% |
| !!! | AAGATTAATTTTCTAAGATA+CGG | - | chr3.3:80011507-80011526 | None:intergenic | 15.0% |
| !!! | CTTTTTTATTTCTTTCAAAT+AGG | + | chr3.3:80010095-80010114 | MS.gene049267:intron | 15.0% |
| !!! | TACAATAAGTTCATTTTAAA+AGG | - | chr3.3:80009637-80009656 | None:intergenic | 15.0% |
| !! | AAATATTAGGATTTGATTCT+TGG | + | chr3.3:80010348-80010367 | MS.gene049267:intron | 20.0% |
| !! | TTAACATATTCTTGTATTGA+AGG | + | chr3.3:80012024-80012043 | MS.gene049267:intron | 20.0% |
| !!! | GTTGTGGATTAATAATATAA+TGG | + | chr3.3:80011734-80011753 | MS.gene049267:intron | 20.0% |
| !!! | TAAATAGCTTTTCCAAAAAA+TGG | - | chr3.3:80012195-80012214 | None:intergenic | 20.0% |
| !!! | TTCTAGAAAAAACAATAGAA+AGG | - | chr3.3:80010829-80010848 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTGCTGTTGTTTA+TGG | + | chr3.3:80010969-80010988 | MS.gene049267:intron | 20.0% |
| ! | AACAAAAAGGTTAACTTAGA+AGG | - | chr3.3:80010462-80010481 | None:intergenic | 25.0% |
| ! | AACATGTAACACAAAATATC+AGG | - | chr3.3:80010523-80010542 | None:intergenic | 25.0% |
| ! | ATTTGTCGTATAAATGACAA+AGG | + | chr3.3:80011214-80011233 | MS.gene049267:intron | 25.0% |
| ! | GAATCTTCAAATTTGATACT+TGG | + | chr3.3:80009573-80009592 | MS.gene049267:CDS | 25.0% |
| ! | TGAAAATAGAATGGTTCTTT+CGG | - | chr3.3:80012353-80012372 | None:intergenic | 25.0% |
| ! | TGCACATTAATGTTTATGTT+TGG | + | chr3.3:80012407-80012426 | MS.gene049267:intron | 25.0% |
| ! | TTATTAATCCACAACTTACT+TGG | - | chr3.3:80011729-80011748 | None:intergenic | 25.0% |
| !! | AAATTTCATTCTTTTTACGG+TGG | - | chr3.3:80012234-80012253 | None:intergenic | 25.0% |
| !! | ATAATCTGATACCATGTTTT+GGG | + | chr3.3:80009823-80009842 | MS.gene049267:CDS | 25.0% |
| !! | TATGGTATTTGTCTTTTATG+TGG | + | chr3.3:80010987-80011006 | MS.gene049267:intron | 25.0% |
| !! | TCTAAGTTAACCTTTTTGTT+TGG | + | chr3.3:80010462-80010481 | MS.gene049267:intron | 25.0% |
| !! | TGAACATTTTGAATGTCATT+GGG | + | chr3.3:80012302-80012321 | MS.gene049267:intron | 25.0% |
| !! | TTATCCTCTCTCAATTATTT+TGG | + | chr3.3:80011031-80011050 | MS.gene049267:CDS | 25.0% |
| !!! | CTTTTATGTTGATAATGAAC+TGG | - | chr3.3:80011819-80011838 | None:intergenic | 25.0% |
| !!! | TTTTTTTATGTAGACTTGCA+AGG | + | chr3.3:80012481-80012500 | MS.gene049267:intron | 25.0% |
| AACACAAAATATCAGGAGAA+AGG | - | chr3.3:80010516-80010535 | None:intergenic | 30.0% | |
| AATGTAAGATGCCTTACAAA+TGG | + | chr3.3:80011325-80011344 | MS.gene049267:intron | 30.0% | |
| AATTGTGAGGTAACTTGAAT+TGG | + | chr3.3:80010572-80010591 | MS.gene049267:intron | 30.0% | |
| ACACTTGACAACTTATTGTT+TGG | + | chr3.3:80010422-80010441 | MS.gene049267:intron | 30.0% | |
| ACTTTGACGATAACATTACT+GGG | + | chr3.3:80011090-80011109 | MS.gene049267:CDS | 30.0% | |
| AGAAAAAACAATAGAAAGGC+AGG | - | chr3.3:80010825-80010844 | None:intergenic | 30.0% | |
| AGAAGATTTATGACACTTTC+AGG | + | chr3.3:80009521-80009540 | MS.gene049267:intron | 30.0% | |
| AGTCACACTGTGATAATTAT+AGG | + | chr3.3:80009693-80009712 | MS.gene049267:intron | 30.0% | |
| ATACTATGGTTAGATTATGG+AGG | + | chr3.3:80011364-80011383 | MS.gene049267:intron | 30.0% | |
| ATAGAGCATAATAGCAGTAA+AGG | + | chr3.3:80009060-80009079 | MS.gene049267:intron | 30.0% | |
| ATAGAGCATATTAGCAGTAA+AGG | + | chr3.3:80009390-80009409 | MS.gene049267:intron | 30.0% | |
| ATCAACCTTCTTCTTATACT+GGG | + | chr3.3:80008842-80008861 | MS.gene049267:CDS | 30.0% | |
| ATGATTATCACAAAACAGCA+TGG | - | chr3.3:80011454-80011473 | None:intergenic | 30.0% | |
| ATGTAAGATGCCTTACAAAT+GGG | + | chr3.3:80011326-80011345 | MS.gene049267:intron | 30.0% | |
| ATTAGGTAAACCCATTTGTA+AGG | - | chr3.3:80011339-80011358 | None:intergenic | 30.0% | |
| CCTTTAATATCTCTCTACAA+AGG | - | chr3.3:80011188-80011207 | None:intergenic | 30.0% | |
| CCTTTGTAGAGAGATATTAA+AGG | + | chr3.3:80011185-80011204 | MS.gene049267:intron | 30.0% | |
| CTGATACTATGGTTAGATTA+TGG | + | chr3.3:80011361-80011380 | MS.gene049267:intron | 30.0% | |
| GCTATGTTGAATTTGTGATT+AGG | + | chr3.3:80010229-80010248 | MS.gene049267:intron | 30.0% | |
| GTTCTGTATTACTAGATTCA+AGG | + | chr3.3:80011756-80011775 | MS.gene049267:intron | 30.0% | |
| TAACCATAGTATCAGACATT+AGG | - | chr3.3:80011356-80011375 | None:intergenic | 30.0% | |
| TAGAGAGATATTAAAGGATC+AGG | + | chr3.3:80011191-80011210 | MS.gene049267:intron | 30.0% | |
| TAGAGCATAATAGCAGTAAA+GGG | + | chr3.3:80009061-80009080 | MS.gene049267:intron | 30.0% | |
| TAGAGCATATTAGCAGTAAA+GGG | + | chr3.3:80009391-80009410 | MS.gene049267:intron | 30.0% | |
| TAGTTAAGTCTAACATGTGA+AGG | - | chr3.3:80009479-80009498 | None:intergenic | 30.0% | |
| TCGTGATCTATTATTTCCTT+AGG | - | chr3.3:80011855-80011874 | None:intergenic | 30.0% | |
| TGATCTATTATTTCCTTAGG+TGG | - | chr3.3:80011852-80011871 | None:intergenic | 30.0% | |
| TGTGCAAATAGTAAAACTTG+AGG | + | chr3.3:80012125-80012144 | MS.gene049267:intron | 30.0% | |
| TTACCTAATGTCTGATACTA+TGG | + | chr3.3:80011350-80011369 | MS.gene049267:intron | 30.0% | |
| TTACCTCACAATTCAAGATA+TGG | - | chr3.3:80010565-80010584 | None:intergenic | 30.0% | |
| TTTGGATGTTGGTACATAAT+AGG | + | chr3.3:80010480-80010499 | MS.gene049267:intron | 30.0% | |
| ! | AAAGAAAGCACATCATGAAA+TGG | - | chr3.3:80010793-80010812 | None:intergenic | 30.0% |
| ! | AAGAAAGCACATCATGAAAT+GGG | - | chr3.3:80010792-80010811 | None:intergenic | 30.0% |
| ! | GATAATCTGATACCATGTTT+TGG | + | chr3.3:80009822-80009841 | MS.gene049267:CDS | 30.0% |
| ! | GTGAACATTTTGAATGTCAT+TGG | + | chr3.3:80012301-80012320 | MS.gene049267:intron | 30.0% |
| !! | AACTCCCTCATTTTTGTTAT+AGG | + | chr3.3:80010641-80010660 | MS.gene049267:intron | 30.0% |
| !! | ACTCCCTCATTTTTGTTATA+GGG | + | chr3.3:80010642-80010661 | MS.gene049267:intron | 30.0% |
| !! | TAACCTTTTTGTTTGGATGT+TGG | + | chr3.3:80010469-80010488 | MS.gene049267:intron | 30.0% |
| !! | TTCGGATTTGTTAGACAAAT+GGG | - | chr3.3:80012055-80012074 | None:intergenic | 30.0% |
| !!! | TCAATTATTTTGGTTGGAGT+TGG | + | chr3.3:80011041-80011060 | MS.gene049267:CDS | 30.0% |
| !!! | TTTCACTAAGCACCATTTTT+TGG | + | chr3.3:80012180-80012199 | MS.gene049267:intron | 30.0% |
| AAACCTGACAGTTTCAAATG+TGG | - | chr3.3:80010036-80010055 | None:intergenic | 35.0% | |
| AAACTCCCAGTATAAGAAGA+AGG | - | chr3.3:80008850-80008869 | None:intergenic | 35.0% | |
| AAAGATCATGTCTGAGAACA+CGG | + | chr3.3:80011616-80011635 | MS.gene049267:CDS | 35.0% | |
| AAATAGAATGGTTCTTTCGG+TGG | - | chr3.3:80012350-80012369 | None:intergenic | 35.0% | |
| AACACCCTCCTAATTATGAT+GGG | + | chr3.3:80008797-80008816 | MS.gene049267:CDS | 35.0% | |
| AACTCCCATCATAATTAGGA+GGG | - | chr3.3:80008804-80008823 | None:intergenic | 35.0% | |
| AATCGATGCAACTTGAAAAG+GGG | - | chr3.3:80009421-80009440 | None:intergenic | 35.0% | |
| AATGTACCTTGCAGCAATTA+TGG | - | chr3.3:80010935-80010954 | None:intergenic | 35.0% | |
| AATTGCTGCATCAATTACAG+GGG | - | chr3.3:80010681-80010700 | None:intergenic | 35.0% | |
| ACAATCGATGCAACTTGAAA+AGG | - | chr3.3:80009423-80009442 | None:intergenic | 35.0% | |
| ACTGAAATGGAATCTCCATA+AGG | - | chr3.3:80011679-80011698 | None:intergenic | 35.0% | |
| ACTGAACTCCCATCATAATT+AGG | - | chr3.3:80008808-80008827 | None:intergenic | 35.0% | |
| AGAGCATAATAGCAGTAAAG+GGG | + | chr3.3:80009062-80009081 | MS.gene049267:intron | 35.0% | |
| AGAGCATATTAGCAGTAAAG+GGG | + | chr3.3:80009392-80009411 | MS.gene049267:intron | 35.0% | |
| ATAGAGCATATTAGCAGCAA+AGG | + | chr3.3:80009225-80009244 | MS.gene049267:intron | 35.0% | |
| ATCCAATGAGCTGAAATTGT+CGG | - | chr3.3:80009007-80009026 | None:intergenic | 35.0% | |
| ATCTTCACATGCTACAAGTT+CGG | + | chr3.3:80008939-80008958 | MS.gene049267:CDS | 35.0% | |
| ATTGCTTGCTCATATGGATT+AGG | - | chr3.3:80009765-80009784 | None:intergenic | 35.0% | |
| ATTTCACCAAAAGCAATGAG+TGG | + | chr3.3:80009601-80009620 | MS.gene049267:CDS | 35.0% | |
| CAATCGATGCAACTTGAAAA+GGG | - | chr3.3:80009422-80009441 | None:intergenic | 35.0% | |
| CAATTGCTGCATCAATTACA+GGG | - | chr3.3:80010682-80010701 | None:intergenic | 35.0% | |
| CACTTTGACGATAACATTAC+TGG | + | chr3.3:80011089-80011108 | MS.gene049267:CDS | 35.0% | |
| CATAGCAGTAGAAAGATACA+GGG | - | chr3.3:80011972-80011991 | None:intergenic | 35.0% | |
| CATCAACCTTCTTCTTATAC+TGG | + | chr3.3:80008841-80008860 | MS.gene049267:CDS | 35.0% | |
| CATTTGTCTAACAAATCCGA+AGG | + | chr3.3:80012054-80012073 | MS.gene049267:CDS | 35.0% | |
| CCAACCAAAATAATTGAGAG+AGG | - | chr3.3:80011038-80011057 | None:intergenic | 35.0% | |
| CCATGACAAACTCTATTATC+AGG | - | chr3.3:80009976-80009995 | None:intergenic | 35.0% | |
| CCTGATAATAGAGTTTGTCA+TGG | + | chr3.3:80009973-80009992 | MS.gene049267:CDS | 35.0% | |
| CTATTATTTCCTTAGGTGGT+GGG | - | chr3.3:80011848-80011867 | None:intergenic | 35.0% | |
| CTGAAATGGAATCTCCATAA+GGG | - | chr3.3:80011678-80011697 | None:intergenic | 35.0% | |
| GATGTTGGTACATAATAGGA+TGG | + | chr3.3:80010484-80010503 | MS.gene049267:intron | 35.0% | |
| GTACCAACATCCAAACAAAA+AGG | - | chr3.3:80010475-80010494 | None:intergenic | 35.0% | |
| GTTCTTGTCATTATTGCTGA+TGG | + | chr3.3:80010734-80010753 | MS.gene049267:CDS | 35.0% | |
| TACCATAAACGCAGCAATAT+CGG | - | chr3.3:80011158-80011177 | None:intergenic | 35.0% | |
| TAGAGCATATTAGCAGCAAA+GGG | + | chr3.3:80009226-80009245 | MS.gene049267:intron | 35.0% | |
| TAGCATGTGAAGATGATTGA+TGG | - | chr3.3:80008933-80008952 | None:intergenic | 35.0% | |
| TAGGTAAGTATTCGTTCCAT+CGG | + | chr3.3:80009712-80009731 | MS.gene049267:intron | 35.0% | |
| TAGTCAAGTCTAACATGTGA+AGG | - | chr3.3:80009149-80009168 | None:intergenic | 35.0% | |
| TCAATTGCTGCATCAATTAC+AGG | - | chr3.3:80010683-80010702 | None:intergenic | 35.0% | |
| TCATAGCAGTAGAAAGATAC+AGG | - | chr3.3:80011973-80011992 | None:intergenic | 35.0% | |
| TCTATTATTTCCTTAGGTGG+TGG | - | chr3.3:80011849-80011868 | None:intergenic | 35.0% | |
| TGCAGCAATTATGGAAGTAA+TGG | - | chr3.3:80010926-80010945 | None:intergenic | 35.0% | |
| TGGCCCTATAACAAAAATGA+GGG | - | chr3.3:80010648-80010667 | None:intergenic | 35.0% | |
| TTAACTTAGAAGGAGAGCTT+TGG | - | chr3.3:80010452-80010471 | None:intergenic | 35.0% | |
| TTACTTCCATAATTGCTGCA+AGG | + | chr3.3:80010926-80010945 | MS.gene049267:CDS | 35.0% | |
| TTCTTCTTATACTGGGAGTT+TGG | + | chr3.3:80008849-80008868 | MS.gene049267:CDS | 35.0% | |
| TTGCCATATCTTGAATTGTG+AGG | + | chr3.3:80010559-80010578 | MS.gene049267:intron | 35.0% | |
| TTGGCCCTATAACAAAAATG+AGG | - | chr3.3:80010649-80010668 | None:intergenic | 35.0% | |
| ! | AAATTGTCGGCTATATATGC+TGG | - | chr3.3:80008994-80009013 | None:intergenic | 35.0% |
| ! | AGAAAGCACATCATGAAATG+GGG | - | chr3.3:80010791-80010810 | None:intergenic | 35.0% |
| ! | ATAAGAAGAGGGTTGATCAT+AGG | - | chr3.3:80008884-80008903 | None:intergenic | 35.0% |
| ! | ATTCCACATTTGAAACTGTC+AGG | + | chr3.3:80010030-80010049 | MS.gene049267:CDS | 35.0% |
| ! | CTGTCTGTCTAGAATAACTA+TGG | - | chr3.3:80010125-80010144 | None:intergenic | 35.0% |
| ! | GTTTTGTGAAACTGTTCTCA+TGG | + | chr3.3:80011263-80011282 | MS.gene049267:intron | 35.0% |
| ! | TTTTACGTAACTTTGAGCCT+AGG | + | chr3.3:80010195-80010214 | MS.gene049267:intron | 35.0% |
| !! | CTTCGGATTTGTTAGACAAA+TGG | - | chr3.3:80012056-80012075 | None:intergenic | 35.0% |
| !! | GAATCAGATCCACTTTTACA+TGG | - | chr3.3:80012436-80012455 | None:intergenic | 35.0% |
| !! | GAATCGAAATTTGTTATGCG+TGG | - | chr3.3:80011897-80011916 | None:intergenic | 35.0% |
| !! | TAAATTCAGAAGCATCTGCT+TGG | - | chr3.3:80009866-80009885 | None:intergenic | 35.0% |
| !! | TAGAGTTTGTCATGGTTTTG+AGG | + | chr3.3:80009981-80010000 | MS.gene049267:CDS | 35.0% |
| !! | TCGGATTTGTTAGACAAATG+GGG | - | chr3.3:80012054-80012073 | None:intergenic | 35.0% |
| !!! | CCTCTCTCAATTATTTTGGT+TGG | + | chr3.3:80011035-80011054 | MS.gene049267:CDS | 35.0% |
| !!! | TTTTCTAAGATACGGAATGC+TGG | - | chr3.3:80011499-80011518 | None:intergenic | 35.0% |
| AAATATCAGGAGAAAGGCTG+TGG | - | chr3.3:80010510-80010529 | None:intergenic | 40.0% | |
| AAGCAATCTCCATAATTGGC+CGG | + | chr3.3:80009778-80009797 | MS.gene049267:CDS | 40.0% | |
| AATCGATGCAGCTTGAAAAG+GGG | - | chr3.3:80009091-80009110 | None:intergenic | 40.0% | |
| ACAACTTGCCAAGTAAGTTG+TGG | + | chr3.3:80011718-80011737 | MS.gene049267:intron | 40.0% | |
| ACAATCGATGCAGCTTGAAA+AGG | - | chr3.3:80009093-80009112 | None:intergenic | 40.0% | |
| AGAGCATATTAGCAGCAAAG+GGG | + | chr3.3:80009227-80009246 | MS.gene049267:intron | 40.0% | |
| AGAGCCTTCATCATATTGGA+AGG | + | chr3.3:80009736-80009755 | MS.gene049267:CDS | 40.0% | |
| ATCCGATATTGCTGCGTTTA+TGG | + | chr3.3:80011153-80011172 | MS.gene049267:intron | 40.0% | |
| ATGGAGATTGCTTGCTCATA+TGG | - | chr3.3:80009771-80009790 | None:intergenic | 40.0% | |
| ATTACAGGGGCAAATGAAGT+TGG | - | chr3.3:80010668-80010687 | None:intergenic | 40.0% | |
| CAACACCCTCCTAATTATGA+TGG | + | chr3.3:80008796-80008815 | MS.gene049267:CDS | 40.0% | |
| CAATCGATGCAGCTTGAAAA+GGG | - | chr3.3:80009092-80009111 | None:intergenic | 40.0% | |
| CAATTTCAGCTCATTGGATC+AGG | + | chr3.3:80009008-80009027 | MS.gene049267:CDS | 40.0% | |
| CATAAACGGGATTTGACACT+CGG | - | chr3.3:80011786-80011805 | None:intergenic | 40.0% | |
| CATCAAAAGTAGACAGAGTC+CGG | - | chr3.3:80009800-80009819 | None:intergenic | 40.0% | |
| CATGTGAAGATGATTGATGG+TGG | - | chr3.3:80008930-80008949 | None:intergenic | 40.0% | |
| CGCAAATTCTGTTTCCTTCT+TGG | - | chr3.3:80011648-80011667 | None:intergenic | 40.0% | |
| CTCTTCTTATACCGGAAGTT+CGG | + | chr3.3:80008894-80008913 | MS.gene049267:CDS | 40.0% | |
| CTGGTTCACTACTGCATAAA+CGG | - | chr3.3:80011800-80011819 | None:intergenic | 40.0% | |
| CTTGGATTCTAACAAGCTAC+TGG | + | chr3.3:80010366-80010385 | MS.gene049267:intron | 40.0% | |
| GAACTCCCATCATAATTAGG+AGG | - | chr3.3:80008805-80008824 | None:intergenic | 40.0% | |
| GAACTTCCGGTATAAGAAGA+GGG | - | chr3.3:80008895-80008914 | None:intergenic | 40.0% | |
| GACATTGTGGAACGAAACAA+CGG | + | chr3.3:80010701-80010720 | MS.gene049267:CDS | 40.0% | |
| GAGCAAGCAATCTCCATAAT+TGG | + | chr3.3:80009774-80009793 | MS.gene049267:CDS | 40.0% | |
| GAGCCTTCATCATATTGGAA+GGG | + | chr3.3:80009737-80009756 | MS.gene049267:CDS | 40.0% | |
| GAGTTAGCATAGCATCAAAC+AGG | - | chr3.3:80010399-80010418 | None:intergenic | 40.0% | |
| GATCAACCCTCTTCTTATAC+CGG | + | chr3.3:80008886-80008905 | MS.gene049267:CDS | 40.0% | |
| GTAATGGTTGCTTGTTCTTG+TGG | - | chr3.3:80010910-80010929 | None:intergenic | 40.0% | |
| GTTAGATTATGGAGGACAGT+GGG | + | chr3.3:80011372-80011391 | MS.gene049267:intron | 40.0% | |
| TAACTTTGAGCCTAGGATTG+AGG | + | chr3.3:80010202-80010221 | MS.gene049267:intron | 40.0% | |
| TATCTTTATGCCCTATGTGC+AGG | + | chr3.3:80012519-80012538 | MS.gene049267:intron | 40.0% | |
| TCTAACAAATCCGAAGGACA+TGG | + | chr3.3:80012060-80012079 | MS.gene049267:CDS | 40.0% | |
| TCTTCTTATACCGGAAGTTC+GGG | + | chr3.3:80008895-80008914 | MS.gene049267:CDS | 40.0% | |
| TGATGCAGCAATTGACATTG+TGG | + | chr3.3:80010688-80010707 | MS.gene049267:CDS | 40.0% | |
| TGGAGATTCCATTTCAGTAC+CGG | + | chr3.3:80011681-80011700 | MS.gene049267:CDS | 40.0% | |
| TGGTTCACTACTGCATAAAC+GGG | - | chr3.3:80011799-80011818 | None:intergenic | 40.0% | |
| ! | CATCATAATTAGGAGGGTGT+TGG | - | chr3.3:80008798-80008817 | None:intergenic | 40.0% |
| ! | GAATGTTTTTCTTTTCCCCC+AGG | + | chr3.3:80010846-80010865 | MS.gene049267:intron | 40.0% |
| ! | GTTGTATATTTTGTGCTGCC+CGG | - | chr3.3:80011703-80011722 | None:intergenic | 40.0% |
| ! | TGTCATTATTGCTGATGGAC+AGG | + | chr3.3:80010739-80010758 | MS.gene049267:CDS | 40.0% |
| !! | ACCAGGATTTCTAGTAACCT+GGG | - | chr3.3:80010866-80010885 | None:intergenic | 40.0% |
| !! | ACGTGTGTGATTTTGATCGA+AGG | - | chr3.3:80012281-80012300 | None:intergenic | 40.0% |
| !! | TAATTTGCTGCCTGCACATA+GGG | - | chr3.3:80012532-80012551 | None:intergenic | 40.0% |
| !! | TACCAGGATTTCTAGTAACC+TGG | - | chr3.3:80010867-80010886 | None:intergenic | 40.0% |
| !! | TCAGATCCACTTTTACATGG+AGG | - | chr3.3:80012433-80012452 | None:intergenic | 40.0% |
| !!! | ATTTTGGTTGGAGTTGGAGA+TGG | + | chr3.3:80011047-80011066 | MS.gene049267:CDS | 40.0% |
| !!! | CTGATACCATGTTTTGGGTT+TGG | + | chr3.3:80009828-80009847 | MS.gene049267:CDS | 40.0% |
| ACCAAAAGCAATGAGTGGAC+AGG | + | chr3.3:80009606-80009625 | MS.gene049267:CDS | 45.0% | |
| AGCCGACAATTTCAGCTCAT+TGG | + | chr3.3:80009002-80009021 | MS.gene049267:CDS | 45.0% | |
| ATGTAGACTTGCAAGGAGTG+TGG | + | chr3.3:80012488-80012507 | MS.gene049267:intron | 45.0% | |
| CATAGCTCAACCTCAATCCT+AGG | - | chr3.3:80010215-80010234 | None:intergenic | 45.0% | |
| CATCCAAAAGCCATGTCCTT+CGG | - | chr3.3:80012073-80012092 | None:intergenic | 45.0% | |
| CCATCACCAAACCCAAAACA+TGG | - | chr3.3:80009837-80009856 | None:intergenic | 45.0% | |
| CGAACTTCCGGTATAAGAAG+AGG | - | chr3.3:80008896-80008915 | None:intergenic | 45.0% | |
| CGGAAGAGCCTTCATCATAT+TGG | + | chr3.3:80009732-80009751 | MS.gene049267:CDS | 45.0% | |
| CTTCTTATACCGGAAGTTCG+GGG | + | chr3.3:80008896-80008915 | MS.gene049267:CDS | 45.0% | |
| GAGCCCTTCCAATATGATGA+AGG | - | chr3.3:80009743-80009762 | None:intergenic | 45.0% | |
| GCGCGTATTTGACAACTTTC+AGG | + | chr3.3:80011112-80011131 | MS.gene049267:CDS | 45.0% | |
| GGAGATTCCATTTCAGTACC+GGG | + | chr3.3:80011682-80011701 | MS.gene049267:CDS | 45.0% | |
| GGTTAGATTATGGAGGACAG+TGG | + | chr3.3:80011371-80011390 | MS.gene049267:intron | 45.0% | |
| GTTAGTATTCCCCGAACTTC+CGG | - | chr3.3:80008908-80008927 | None:intergenic | 45.0% | |
| GTTTGGCCTCCATGTAAAAG+TGG | + | chr3.3:80012424-80012443 | MS.gene049267:intron | 45.0% | |
| TATGATGAAGGCTCTTCCGA+TGG | - | chr3.3:80009731-80009750 | None:intergenic | 45.0% | |
| ! | AAGGACATGGCTTTTGGATG+CGG | + | chr3.3:80012073-80012092 | MS.gene049267:CDS | 45.0% |
| ! | AATCCGAAGGACATGGCTTT+TGG | + | chr3.3:80012067-80012086 | MS.gene049267:CDS | 45.0% |
| ! | ACCTGTCCACTCATTGCTTT+TGG | - | chr3.3:80009610-80009629 | None:intergenic | 45.0% |
| ! | CTTGGCGGGTGAAAATAGAA+TGG | - | chr3.3:80012362-80012381 | None:intergenic | 45.0% |
| ! | TGTGGACTAAGCTTTCCATG+CGG | - | chr3.3:80010892-80010911 | None:intergenic | 45.0% |
| ! | TTCTATTTTCACCCGCCAAG+TGG | + | chr3.3:80012362-80012381 | MS.gene049267:intron | 45.0% |
| !! | CAGGATTTCTAGTAACCTGG+GGG | - | chr3.3:80010864-80010883 | None:intergenic | 45.0% |
| !! | CCAGGATTTCTAGTAACCTG+GGG | - | chr3.3:80010865-80010884 | None:intergenic | 45.0% |
| !! | CTGGTTGCTTGTTATGACGA+TGG | - | chr3.3:80008975-80008994 | None:intergenic | 45.0% |
| !! | GAAACATACTGGTTCTGCAC+TGG | - | chr3.3:80011940-80011959 | None:intergenic | 45.0% |
| !! | GTAATTTGCTGCCTGCACAT+AGG | - | chr3.3:80012533-80012552 | None:intergenic | 45.0% |
| !! | GTTTCTGCTTTGAGAGAAGC+TGG | + | chr3.3:80009546-80009565 | MS.gene049267:CDS | 45.0% |
| !! | TGCTTTGAGAGAAGCTGGTT+TGG | + | chr3.3:80009551-80009570 | MS.gene049267:CDS | 45.0% |
| !!! | CCATGTTTTGGGTTTGGTGA+TGG | + | chr3.3:80009834-80009853 | MS.gene049267:CDS | 45.0% |
| AAGTGCTTCATCTCGTCCCA+TGG | - | chr3.3:80011074-80011093 | None:intergenic | 50.0% | |
| AGACAGAGTCCGGCCAATTA+TGG | - | chr3.3:80009790-80009809 | None:intergenic | 50.0% | |
| CAAGTGGAATTACCACGCAG+AGG | + | chr3.3:80012378-80012397 | MS.gene049267:intron | 50.0% | |
| CCCCAGGTTACTAGAAATCC+TGG | + | chr3.3:80010862-80010881 | MS.gene049267:intron | 50.0% | |
| CTCTGCGTGGTAATTCCACT+TGG | - | chr3.3:80012380-80012399 | None:intergenic | 50.0% | |
| GAAAGATACAGGGAGCGACA+AGG | - | chr3.3:80011962-80011981 | None:intergenic | 50.0% | |
| GGAGCGACAAGGAAACATAC+TGG | - | chr3.3:80011951-80011970 | None:intergenic | 50.0% | |
| TGCGTGGTAATTCCACTTGG+CGG | - | chr3.3:80012377-80012396 | None:intergenic | 50.0% | |
| TGGAGTTGGAGATGGACCAT+GGG | + | chr3.3:80011055-80011074 | MS.gene049267:CDS | 50.0% | |
| TGTGCATTTGTTCCTCTGCG+TGG | - | chr3.3:80012393-80012412 | None:intergenic | 50.0% | |
| TTGGAGTTGGAGATGGACCA+TGG | + | chr3.3:80011054-80011073 | MS.gene049267:CDS | 50.0% | |
| ! | ATTTGCGCTTGCTGCCCTTA+TGG | + | chr3.3:80011661-80011680 | MS.gene049267:CDS | 50.0% |
| !! | ATTTCCTTAGGTGGTGGGAG+AGG | - | chr3.3:80011843-80011862 | None:intergenic | 50.0% |
| !! | GAACACGGAAGCATCCAAGA+AGG | + | chr3.3:80011631-80011650 | MS.gene049267:CDS | 50.0% |
| AAGACCTCTCCCACCACCTA+AGG | + | chr3.3:80011836-80011855 | MS.gene049267:CDS | 55.0% | |
| AGAAATCCTGGTACGCCGCA+TGG | + | chr3.3:80010874-80010893 | MS.gene049267:CDS | 55.0% | |
| GCGTGGTAATTCCACTTGGC+GGG | - | chr3.3:80012376-80012395 | None:intergenic | 55.0% | |
| ! | TGTGCTGCCCGGTACTGAAA+TGG | - | chr3.3:80011692-80011711 | None:intergenic | 55.0% |
| !! | CATACTGGTTCTGCACTGGC+TGG | - | chr3.3:80011936-80011955 | None:intergenic | 55.0% |
| AGCTTTCCATGCGGCGTACC+AGG | - | chr3.3:80010883-80010902 | None:intergenic | 60.0% | |
| !! | TCTGCACTGGCTGGAGCTGT+TGG | - | chr3.3:80011927-80011946 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 80008766 | 80012563 | 80008766 | ID=MS.gene049267 |
| chr3.3 | mRNA | 80008766 | 80012563 | 80008766 | ID=MS.gene049267.t1;Parent=MS.gene049267 |
| chr3.3 | exon | 80008766 | 80009029 | 80008766 | ID=MS.gene049267.t1.exon1;Parent=MS.gene049267.t1 |
| chr3.3 | CDS | 80008766 | 80009029 | 80008766 | ID=cds.MS.gene049267.t1;Parent=MS.gene049267.t1 |
| chr3.3 | exon | 80009543 | 80009627 | 80009543 | ID=MS.gene049267.t1.exon2;Parent=MS.gene049267.t1 |
| chr3.3 | CDS | 80009543 | 80009627 | 80009543 | ID=cds.MS.gene049267.t1;Parent=MS.gene049267.t1 |
| chr3.3 | exon | 80009715 | 80009855 | 80009715 | ID=MS.gene049267.t1.exon3;Parent=MS.gene049267.t1 |
| chr3.3 | CDS | 80009715 | 80009855 | 80009715 | ID=cds.MS.gene049267.t1;Parent=MS.gene049267.t1 |
| chr3.3 | exon | 80009938 | 80010051 | 80009938 | ID=MS.gene049267.t1.exon4;Parent=MS.gene049267.t1 |
| chr3.3 | CDS | 80009938 | 80010051 | 80009938 | ID=cds.MS.gene049267.t1;Parent=MS.gene049267.t1 |
| chr3.3 | exon | 80010663 | 80010760 | 80010663 | ID=MS.gene049267.t1.exon5;Parent=MS.gene049267.t1 |
| chr3.3 | CDS | 80010663 | 80010760 | 80010663 | ID=cds.MS.gene049267.t1;Parent=MS.gene049267.t1 |
| chr3.3 | exon | 80010868 | 80010947 | 80010868 | ID=MS.gene049267.t1.exon6;Parent=MS.gene049267.t1 |
| chr3.3 | CDS | 80010868 | 80010947 | 80010868 | ID=cds.MS.gene049267.t1;Parent=MS.gene049267.t1 |
| chr3.3 | exon | 80011028 | 80011133 | 80011028 | ID=MS.gene049267.t1.exon7;Parent=MS.gene049267.t1 |
| chr3.3 | CDS | 80011028 | 80011133 | 80011028 | ID=cds.MS.gene049267.t1;Parent=MS.gene049267.t1 |
| chr3.3 | exon | 80011602 | 80011729 | 80011602 | ID=MS.gene049267.t1.exon8;Parent=MS.gene049267.t1 |
| chr3.3 | CDS | 80011602 | 80011729 | 80011602 | ID=cds.MS.gene049267.t1;Parent=MS.gene049267.t1 |
| chr3.3 | exon | 80011809 | 80011950 | 80011809 | ID=MS.gene049267.t1.exon9;Parent=MS.gene049267.t1 |
| chr3.3 | CDS | 80011809 | 80011950 | 80011809 | ID=cds.MS.gene049267.t1;Parent=MS.gene049267.t1 |
| chr3.3 | exon | 80012046 | 80012106 | 80012046 | ID=MS.gene049267.t1.exon10;Parent=MS.gene049267.t1 |
| chr3.3 | CDS | 80012046 | 80012106 | 80012046 | ID=cds.MS.gene049267.t1;Parent=MS.gene049267.t1 |
| chr3.3 | exon | 80012541 | 80012563 | 80012541 | ID=MS.gene049267.t1.exon11;Parent=MS.gene049267.t1 |
| chr3.3 | CDS | 80012541 | 80012563 | 80012541 | ID=cds.MS.gene049267.t1;Parent=MS.gene049267.t1 |
| Gene Sequence |
| Protein sequence |
