AlfalfaGEDB | MS.gene049267

M. sativa cultivar XinJiangDaYe / MS.gene049267

KEGG: K16280
GO: -
PFAM: PF07002.19

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene049267.t1	XP_003602643.2	97.5	405	10	0	1	405	7	411	1.70E-196	695.3

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene049267.t1	Q8RX26	72.2	331	86	3	78	405	13	340	1.5e-135	484.2

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene049267.t1	A0A072VBP5	97.5	405	10	0	1	405	24	428	1.3e-196	695.3

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049267	MS.gene058840	0.817185	3.76E-52	-1.69E-46
MS.gene049267	MS.gene063364	0.84395	1.02E-58	-1.69E-46
MS.gene049267	MS.gene06381	0.83205	1.18E-55	-1.69E-46
MS.gene049267	MS.gene064407	0.812012	5.25E-51	-1.69E-46
MS.gene049267	MS.gene068043	0.815613	8.45E-52	-1.69E-46
MS.gene049267	MS.gene068297	0.817339	3.47E-52	-1.69E-46
MS.gene049267	MS.gene073173	0.870975	9.72E-67	-1.69E-46
MS.gene049267	MS.gene07591	0.802435	5.62E-49	-1.69E-46
MS.gene049267	MS.gene24974	0.821241	4.48E-53	-1.69E-46
MS.gene049267	MS.gene27827	0.816826	4.53E-52	-1.69E-46

Showing 1 to 10 of 24 entries

Previous1 2 3Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene049267.t1	MTR_3g096520	95.844	409	17	0	1	409	24	432	0.0	821
MS.gene049267.t1	MTR_3g096520	95.844	409	17	0	1	409	7	415	0.0	820
MS.gene049267.t1	MTR_3g096520	95.599	409	17	1	1	409	7	414	0.0	815
MS.gene049267.t1	MTR_3g086520	61.126	373	121	5	56	404	71	443	8.21e-155	446
MS.gene049267.t1	MTR_3g086520	61.126	373	121	5	56	404	68	440	1.04e-154	445
MS.gene049267.t1	MTR_3g086520	61.126	373	121	5	56	404	71	443	1.20e-154	445
MS.gene049267.t1	MTR_6g021730	58.919	370	114	3	69	404	94	459	1.74e-153	443
MS.gene049267.t1	MTR_3g075530	61.605	349	115	3	71	404	64	408	3.48e-153	440
MS.gene049267.t1	MTR_7g033100	64.179	335	111	4	79	404	84	418	4.05e-153	441
MS.gene049267.t1	MTR_8g089670	59.392	362	131	3	57	404	89	448	6.82e-151	436

Showing 1 to 10 of 28 entries

Previous1 2 3Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene049267.t1	AT5G63970	70.029	347	98	3	66	409	1	344	4.80e-180	506
MS.gene049267.t1	AT5G63970	70.029	347	98	3	66	409	1	344	4.80e-180	506
MS.gene049267.t1	AT3G01650	61.823	351	122	3	62	404	116	462	1.71e-154	446
MS.gene049267.t1	AT3G01650	61.823	351	122	3	62	404	116	462	1.71e-154	446
MS.gene049267.t1	AT5G14420	59.218	358	123	2	67	404	87	441	5.82e-150	433
MS.gene049267.t1	AT5G14420	59.218	358	123	2	67	404	87	441	5.82e-150	433
MS.gene049267.t1	AT5G14420	59.218	358	123	2	67	404	87	441	5.82e-150	433
MS.gene049267.t1	AT5G14420	59.218	358	123	2	67	404	87	441	5.82e-150	433
MS.gene049267.t1	AT1G67800	56.201	379	147	4	40	404	33	406	3.43e-144	417
MS.gene049267.t1	AT1G67800	56.201	379	147	4	40	404	33	406	3.43e-144	417

Showing 1 to 10 of 21 entries

Previous1 2 3Next

Find 100 sgRNAs with CRISPR-Local

Find 232 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCTGACAGTTTCAAATG+TGG	0.629100	3.3:-80010033	None:intergenic
AAACTCCCAGTATAAGAAGA+AGG	0.556963	3.3:-80008847	None:intergenic
AAAGATCATGTCTGAGAACA+CGG	0.629668	3.3:+80011616	MS.gene049267:CDS
AAATTGTCGGCTATATATGC+TGG	0.574282	3.3:-80008991	None:intergenic
AACACCCTCCTAATTATGAT+GGG	0.599452	3.3:+80008797	MS.gene049267:CDS
AACTCCCATCATAATTAGGA+GGG	0.620871	3.3:-80008801	None:intergenic
AAGACCTCTCCCACCACCTA+AGG	0.533866	3.3:+80011836	MS.gene049267:CDS
AAGCAATCTCCATAATTGGC+CGG	0.575523	3.3:+80009778	MS.gene049267:CDS
AAGTGCTTCATCTCGTCCCA+TGG	0.572627	3.3:-80011071	None:intergenic
AATCCGAAGGACATGGCTTT+TGG	0.260692	3.3:+80012067	MS.gene049267:CDS

Showing 1 to 10 of 100 entries

Previous1 2 3 4 5…10Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AACACAAAATATCAGGAGAA+AGG	-	chr3.3:80010516-80010535	None:intergenic	30.0%
AATGTAAGATGCCTTACAAA+TGG	+	chr3.3:80011325-80011344	MS.gene049267:intron	30.0%
AATTGTGAGGTAACTTGAAT+TGG	+	chr3.3:80010572-80010591	MS.gene049267:intron	30.0%
ACACTTGACAACTTATTGTT+TGG	+	chr3.3:80010422-80010441	MS.gene049267:intron	30.0%
ACTTTGACGATAACATTACT+GGG	+	chr3.3:80011090-80011109	MS.gene049267:CDS	30.0%
AGAAAAAACAATAGAAAGGC+AGG	-	chr3.3:80010825-80010844	None:intergenic	30.0%
AGAAGATTTATGACACTTTC+AGG	+	chr3.3:80009521-80009540	MS.gene049267:intron	30.0%
AGTCACACTGTGATAATTAT+AGG	+	chr3.3:80009693-80009712	MS.gene049267:intron	30.0%
ATACTATGGTTAGATTATGG+AGG	+	chr3.3:80011364-80011383	MS.gene049267:intron	30.0%
ATAGAGCATAATAGCAGTAA+AGG	+	chr3.3:80009060-80009079	MS.gene049267:intron	30.0%

Showing 1 to 10 of 232 entries

Previous1 2 3 4 5…24Next

Chromosome	Type	Strat	End	Strand	Name
chr3.3	gene	80008766	80012563	80008766	ID=MS.gene049267
chr3.3	mRNA	80008766	80012563	80008766	ID=MS.gene049267.t1;Parent=MS.gene049267
chr3.3	exon	80008766	80009029	80008766	ID=MS.gene049267.t1.exon1;Parent=MS.gene049267.t1
chr3.3	CDS	80008766	80009029	80008766	ID=cds.MS.gene049267.t1;Parent=MS.gene049267.t1
chr3.3	exon	80009543	80009627	80009543	ID=MS.gene049267.t1.exon2;Parent=MS.gene049267.t1
chr3.3	CDS	80009543	80009627	80009543	ID=cds.MS.gene049267.t1;Parent=MS.gene049267.t1
chr3.3	exon	80009715	80009855	80009715	ID=MS.gene049267.t1.exon3;Parent=MS.gene049267.t1
chr3.3	CDS	80009715	80009855	80009715	ID=cds.MS.gene049267.t1;Parent=MS.gene049267.t1
chr3.3	exon	80009938	80010051	80009938	ID=MS.gene049267.t1.exon4;Parent=MS.gene049267.t1
chr3.3	CDS	80009938	80010051	80009938	ID=cds.MS.gene049267.t1;Parent=MS.gene049267.t1
chr3.3	exon	80010663	80010760	80010663	ID=MS.gene049267.t1.exon5;Parent=MS.gene049267.t1
chr3.3	CDS	80010663	80010760	80010663	ID=cds.MS.gene049267.t1;Parent=MS.gene049267.t1
chr3.3	exon	80010868	80010947	80010868	ID=MS.gene049267.t1.exon6;Parent=MS.gene049267.t1
chr3.3	CDS	80010868	80010947	80010868	ID=cds.MS.gene049267.t1;Parent=MS.gene049267.t1
chr3.3	exon	80011028	80011133	80011028	ID=MS.gene049267.t1.exon7;Parent=MS.gene049267.t1
chr3.3	CDS	80011028	80011133	80011028	ID=cds.MS.gene049267.t1;Parent=MS.gene049267.t1
chr3.3	exon	80011602	80011729	80011602	ID=MS.gene049267.t1.exon8;Parent=MS.gene049267.t1
chr3.3	CDS	80011602	80011729	80011602	ID=cds.MS.gene049267.t1;Parent=MS.gene049267.t1
chr3.3	exon	80011809	80011950	80011809	ID=MS.gene049267.t1.exon9;Parent=MS.gene049267.t1
chr3.3	CDS	80011809	80011950	80011809	ID=cds.MS.gene049267.t1;Parent=MS.gene049267.t1
chr3.3	exon	80012046	80012106	80012046	ID=MS.gene049267.t1.exon10;Parent=MS.gene049267.t1
chr3.3	CDS	80012046	80012106	80012046	ID=cds.MS.gene049267.t1;Parent=MS.gene049267.t1
chr3.3	exon	80012541	80012563	80012541	ID=MS.gene049267.t1.exon11;Parent=MS.gene049267.t1
chr3.3	CDS	80012541	80012563	80012541	ID=cds.MS.gene049267.t1;Parent=MS.gene049267.t1

Gene Sequence

>MS.gene049267

ATGTCTGAATCTCAACATGAATTTTACTACCAACACCCTCCTAATTATGATGGGAGTTCAGTGAGTAATAGTTATCATCAACCTTCTTCTTATACTGGGAGTTTGGATAGCACTACCTATGATCAACCCTCTTCTTATACCGGAAGTTCGGGGAATACTAACCACCATCAATCATCTTCACATGCTACAAGTTCGGTGAATACTCACCATCGTCATAACAAGCAACCAGCATATATAGCCGACAATTTCAGCTCATTGGATCAGGTCTTCACTGTTAATTTTGTTATGTGATTTATAGAGCATAATAGCAGTAAAGGGGTAGCCCCTTTTCAAGCTGCATCGATTGTATATATGCAGCTATTTTGAAGAATATTAATTAGCCTTCACATGTTAGACTTGACTAGTAGAAACTTCGTTCTTATAATAGAAGATTTATAGAGCTATTTTGTTATGTGATTTATAGAGCATATTAGCAGCAAAGGGGTAGCCCCTTTTCAAGCTGCATCGATTGTATATATGCAGCTATTTTGAAGAATATTAATTAGCCTTCACATGTTAGACTTGACTAGTAGAAACTTCGTTCTTATAATAGAAGATTTATAGAGCTATTTTGTTATGTGATTTATAGAGCATATTAGCAGTAAAGGGGTAGCCCCTTTTCAAGTTGCATCGATTGTATATATGCAGCTATTTTGAAGAATATTAATTAGCCTTCACATGTTAGACTTAACTAATAGAAACTTCGTTCTTATAATAGAAGATTTATGACACTTTCAGGTTGTTTCTGCTTTGAGAGAAGCTGGTTTGGAATCTTCAAATTTGATACTTGGTATTGATTTCACCAAAAGCAATGAGTGGACAGGTTAGTCCTTTTAAAATGAACTTATTGTATATGCATATATTGATATGATCATATGAATGTAGAAAAGTCACACTGTGATAATTATAGGTAAGTATTCGTTCCATCGGAAGAGCCTTCATCATATTGGAAGGGCTCCTAATCCATATGAGCAAGCAATCTCCATAATTGGCCGGACTCTGTCTACTTTTGATGAAGATAATCTGATACCATGTTTTGGGTTTGGTGATGGTGAGTACCAAGCAGATGCTTCTGAATTTATAGAAATTCTGTGTTTTCTCTTTTGTTGATTTCAATGCATTTACTTTTGTAGCTTCTACACACGATCAGAATGTGTTCAGCTTTTATCCTGATAATAGAGTTTGTCATGGTTTTGAGGAAGTACTTACACGCTATAGACTGATTATTCCACATTTGAAACTGTCAGGTTTGTTTTACAACATTCTTCATCTGTCAGTTCAAATTTTTCACTTTTTTATTTCTTTCAAATAGGCATACCATAGTTATTCTAGACAGACAGTTGCATTATAATTTATTGTATACGGCGCTAAGCATATCATGAGTTCAAAATTTTACGTAACTTTGAGCCTAGGATTGAGGTTGAGCTATGTTGAATTTGTGATTAGGTGTGTCTAAATCAGACTACACTCACTTCTGTTTATAACATCATATAGAATAAACACATATTAATTGATATGATTTTCTAATTCTAATCCTAATAATAAATATTAGGATTTGATTCTTGGATTCTAACAAGCTACTGGTTCTAGACCTGTTTGATGCTATGCTAACTCTATACACTTGACAACTTATTGTTTGGTCTGCCAAAGCTCTCCTTCTAAGTTAACCTTTTTGTTTGGATGTTGGTACATAATAGGATGGCCACAGCCTTTCTCCTGATATTTTGTGTTACATGTTCTAGATTTTAAAATAATTGCCATATCTTGAATTGTGAGGTAACTTGAATTGGAAGTTATGAATTAAAATGTCAGAATAAAGTTGAATTTAATCATAACAACTCCCTCATTTTTGTTATAGGGCCAACTTCATTTGCCCCTGTAATTGATGCAGCAATTGACATTGTGGAACGAAACAACGGTCAATATCACGTTCTTGTCATTATTGCTGATGGACAGGTTATACTTATATCTATTTATTTTTTTCCCCATTTCATGATGTGCTTTCTTTGTTTATTTTCCTGCCTTTCTATTGTTTTTTCTAGAATGTTTTTCTTTTCCCCCAGGTTACTAGAAATCCTGGTACGCCGCATGGAAAGCTTAGTCCACAAGAACAAGCAACCATTACTTCCATAATTGCTGCAAGGTACATTAACTTTTCTGTATTTTTTTTTTTGCTGTTGTTTATGGTATTTGTCTTTTATGTGGAGAAATTATGATTTTCAGTCATTATCCTCTCTCAATTATTTTGGTTGGAGTTGGAGATGGACCATGGGACGAGATGAAGCACTTTGACGATAACATTACTGGGCGCGTATTTGACAACTTTCAGGTATTTAATACACTTGAACATCCGATATTGCTGCGTTTATGGTAACTTTCACCTTTGTAGAGAGATATTAAAGGATCAGGATTTGTCGTATAAATGACAAAGGCAATATCACGTCAGCTAATTTGAAATGTTTTGTGAAACTGTTCTCATGGTTGAGAGTTGAGACATAGATCTAACTTAAAAAATTGATAAATGTAAGATGCCTTACAAATGGGTTTACCTAATGTCTGATACTATGGTTAGATTATGGAGGACAGTGGGTTAGTAGTTGAGATAAAGTGATAAACTTTTTCTCACAAATTTAACATTTTTATATTCCATGCTGTTTTGTGATAATCATATGCTGCAAGTCTGCAACACATCCAGCATTCCGTATCTTAGAAAATTAATCTTAATTCTAGCATTATGAATTTCTTTATGATGAAATTGATTAATTATCAACTGTTTTCCATTTTATAATTTCTGTAGTTTGTAAACTTCACAAAGATCATGTCTGAGAACACGGAAGCATCCAAGAAGGAAACAGAATTTGCGCTTGCTGCCCTTATGGAGATTCCATTTCAGTACCGGGCAGCACAAAATATACAACTTGCCAAGTAAGTTGTGGATTAATAATATAATGGTTCTGTATTACTAGATTCAAGGATAACCGAGTGTCAAATCCCGTTTATGCAGTAGTGAACCAGTTCATTATCAACATAAAAGACCTCTCCCACCACCTAAGGAAATAATAGATCACGATAATGCATTCATAGTGACTCCACGCATAACAAATTTCGATTCAATTGAACCAACAGCTCCAGCCAGTGCAGAACCAGTATGTTTCCTTGTCGCTCCCTGTATCTTTCTACTGCTATGATTCATTTCGAAATGATAACTGAACTGTGAGATTAACATATTCTTGTATTGAAGGTATGCCCCATTTGTCTAACAAATCCGAAGGACATGGCTTTTGGATGCGGTCATACAGTAAGTCAGTTTATTATATGCTTGTGCAAATAGTAAAACTTGAGGCGTGAATTAAATGCAATAGTAAAGTAATTGCATTTCACTAAGCACCATTTTTTGGAAAAGCTATTTAGATCATAGATTTTGATCCACCGTAAAAAGAATGAAATTTTAAAAGAAAATTAGCGACAATCATCCTTCGATCAAAATCACACACGTGTGAACATTTTGAATGTCATTGGGAAAACAATATGCTCTATTTTCACCACCGAAAGAACCATTCTATTTTCACCCGCCAAGTGGAATTACCACGCAGAGGAACAAATGCACATTAATGTTTATGTTTGGCCTCCATGTAAAAGTGGATCTGATTCTTATTCTTATATCCTCTATTTTTTATTTTTTTATGTAGACTTGCAAGGAGTGTGGTGCAACATTATCTTTATGCCCTATGTGCAGGCAGCAAATTACTACTCGCTTGA

Protein sequence

>MS.gene049267.t1

MSESQHEFYYQHPPNYDGSSVSNSYHQPSSYTGSLDSTTYDQPSSYTGSSGNTNHHQSSSHATSSVNTHHRHNKQPAYIADNFSSLDQVVSALREAGLESSNLILGIDFTKSNEWTGKYSFHRKSLHHIGRAPNPYEQAISIIGRTLSTFDEDNLIPCFGFGDASTHDQNVFSFYPDNRVCHGFEEVLTRYRLIIPHLKLSGPTSFAPVIDAAIDIVERNNGQYHVLVIIADGQVTRNPGTPHGKLSPQEQATITSIIAASHYPLSIILVGVGDGPWDEMKHFDDNITGRVFDNFQFVNFTKIMSENTEASKKETEFALAALMEIPFQYRAAQNIQLANSEPVHYQHKRPLPPPKEIIDHDNAFIVTPRITNFDSIEPTAPASAEPVCPICLTNPKDMAFGCGHTVSSKLLLA