AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene064458

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene064458.t1 MTR_1g063180 84.706 170 4 1 1 148 1302 1471 7.18e-94 296
MS.gene064458.t1 MTR_1g063180 84.706 170 4 1 1 148 1313 1482 9.37e-94 296
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene064458.t1 AT1G33410 47.337 169 66 2 2 148 1319 1486 1.26e-43 153
MS.gene064458.t1 AT1G33410 47.337 169 66 2 2 148 1323 1490 1.27e-43 153

Find 30 sgRNAs with CRISPR-Local

Find 180 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAAGATTGAATTGCCTCTT+TGG 0.221813 1.2:-48474963 MS.gene064458:CDS
GAAAGAGACCATTTGCTCTT+TGG 0.268278 1.2:-48474103 MS.gene064458:CDS
CATAGAATCGTTTGCTTCAA+TGG 0.281506 1.2:-48474554 MS.gene064458:intron
CGACTATTTCTGTCCGTTTG+TGG 0.335886 1.2:+48476194 None:intergenic
CAGTTCTTTGTTGAATCATC+TGG 0.337264 1.2:-48473979 MS.gene064458:CDS
AGGTTGCCGGTTATTGTTGC+TGG 0.368609 1.2:-48475006 MS.gene064458:CDS
TTTCAGCTATTTGTCAACTA+TGG 0.369188 1.2:-48474613 MS.gene064458:intron
TTGGCTTGTTCAGTTGTTCA+AGG 0.382980 1.2:-48474944 MS.gene064458:intron
CCAAAGAGGCAATTCAATCT+TGG 0.383957 1.2:+48474963 None:intergenic
GGACTTTCATGGTAGGTTGC+CGG 0.395550 1.2:-48475019 MS.gene064458:CDS
AAGCTTGAGATGGTTGTTCA+TGG 0.414030 1.2:-48476242 None:intergenic
AGAGTTCCAGCAACAATAAC+CGG 0.429090 1.2:+48475000 None:intergenic
CAAAGAGGCAATTCAATCTT+GGG 0.444748 1.2:+48474964 None:intergenic
TTCTGATTAATTCTTCAAGT+TGG 0.456514 1.2:+48474048 None:intergenic
GAGAAGTACAAGGACTTTCA+TGG 0.475134 1.2:-48475030 MS.gene064458:CDS
CTTGAAGAATTAATCAGAAT+GGG 0.480821 1.2:-48474044 MS.gene064458:CDS
ACTTGAAGAATTAATCAGAA+TGG 0.483317 1.2:-48474045 MS.gene064458:CDS
TACGGGAACCAAAGAGCAAA+TGG 0.503671 1.2:+48474095 None:intergenic
AGCTGCTCAATAGTTGTGTA+CGG 0.512484 1.2:+48474077 None:intergenic
CTGTCCGTTTGTGGAGCTGT+AGG 0.528743 1.2:+48476203 None:intergenic
AACGGACAGAAATAGTCGTT+GGG 0.533895 1.2:-48476189 MS.gene064458:CDS
TTTGTTGAATCATCTGGAGA+TGG 0.535177 1.2:-48473973 None:intergenic
AATTCCTACAGCTCCACAAA+CGG 0.548133 1.2:-48476207 MS.gene064458:CDS
GGAGCTGTAGGAATTGTAAC+AGG 0.561183 1.2:+48476215 None:intergenic
AACAACTGAACAAGCCAAAG+AGG 0.573798 1.2:+48474949 None:intergenic
AAACGGACAGAAATAGTCGT+TGG 0.575661 1.2:-48476190 MS.gene064458:CDS
GCTGCTCAATAGTTGTGTAC+GGG 0.583234 1.2:+48474078 None:intergenic
AAAATTGCAGGAGAAGTACA+AGG 0.606351 1.2:-48475040 MS.gene064458:intron
AGTACAAGGACTTTCATGGT+AGG 0.628234 1.2:-48475026 MS.gene064458:CDS
ATTAATCAGAATGGGTCACA+TGG 0.631043 1.2:-48474036 MS.gene064458:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTTAGAAAATAAATTTATTA+TGG - chr1.2:48474729-48474748 MS.gene064458:intron 10.0%
!!! ATAATTTATTTCTCTTAAGT+TGG - chr1.2:48475057-48475076 MS.gene064458:intron 15.0%
!!! TAATTTATTTCTCTTAAGTT+GGG - chr1.2:48475058-48475077 MS.gene064458:intron 15.0%
!!! TTTTTTTTTTTTCCTAAAGT+AGG - chr1.2:48474325-48474344 MS.gene064458:intron 15.0%
!! ATTACTGTTATCATTGAAAT+TGG - chr1.2:48475709-48475728 MS.gene064458:intron 20.0%
!! CATAGAATAAAATCAACTAA+AGG + chr1.2:48474094-48474113 None:intergenic 20.0%
!! TAATGTTCTTAAAACTGAAA+TGG - chr1.2:48475794-48475813 MS.gene064458:intron 20.0%
!! TTGTGTTTATACTTATAATG+CGG + chr1.2:48474551-48474570 None:intergenic 20.0%
!!! AAATCACTTTTTTACTACTA+CGG - chr1.2:48475677-48475696 MS.gene064458:intron 20.0%
!!! ATTTCAGTTTTAAGAACATT+AGG + chr1.2:48475795-48475814 None:intergenic 20.0%
!!! ATTTTATCTGTAACTCATTA+TGG - chr1.2:48474819-48474838 MS.gene064458:intron 20.0%
!!! TTTCTTTTAATTATATCTGC+TGG + chr1.2:48476088-48476107 None:intergenic 20.0%
!!! TTTTATCTGTAACTCATTAT+GGG - chr1.2:48474820-48474839 MS.gene064458:intron 20.0%
! AAGTATAAACACAAACTAAC+TGG - chr1.2:48474557-48474576 MS.gene064458:CDS 25.0%
! ACTTGAAGAATTAATCAGAA+TGG - chr1.2:48476162-48476181 MS.gene064458:intron 25.0%
! AGCACATGATATTTATTTCA+TGG - chr1.2:48476001-48476020 MS.gene064458:intron 25.0%
! CTTGAAGAATTAATCAGAAT+GGG - chr1.2:48476163-48476182 MS.gene064458:intron 25.0%
! TAAAGGCTAACATATAAAAG+AGG + chr1.2:48474077-48474096 None:intergenic 25.0%
! TATGAAAATTTCTCCAATCA+CGG + chr1.2:48474152-48474171 None:intergenic 25.0%
! TTCTGATTAATTCTTCAAGT+TGG + chr1.2:48476162-48476181 None:intergenic 25.0%
!! AAAACTAAGGTGTTTATAAG+TGG - chr1.2:48474480-48474499 MS.gene064458:intron 25.0%
!! GCTGTATAGATGATTTTATA+TGG - chr1.2:48474996-48475015 MS.gene064458:CDS 25.0%
!!! TAATTTTCTAGGACTTTCAT+GGG - chr1.2:48475286-48475305 MS.gene064458:intron 25.0%
!!! TGGTTTGGTTTTTAAAACAT+TGG - chr1.2:48475919-48475938 MS.gene064458:intron 25.0%
!!! TTGCTTTAAAATGCTTAAAC+CGG + chr1.2:48475863-48475882 None:intergenic 25.0%
ACGTGTAAAAGGATATAAAG+AGG + chr1.2:48475328-48475347 None:intergenic 30.0%
ATCATCTATACAGCTGAATA+AGG + chr1.2:48474990-48475009 None:intergenic 30.0%
ATGTTCCTACACTCTAAATT+GGG - chr1.2:48474582-48474601 MS.gene064458:CDS 30.0%
GGAACAAAGAAAGAAAACTA+AGG - chr1.2:48474467-48474486 MS.gene064458:intron 30.0%
GTTCTTAAAACTGAAATGGA+TGG - chr1.2:48475798-48475817 MS.gene064458:intron 30.0%
TATGTTCCTACACTCTAAAT+TGG - chr1.2:48474581-48474600 MS.gene064458:CDS 30.0%
TGAGAAATATATTAGAGCAC+AGG + chr1.2:48475028-48475047 None:intergenic 30.0%
TGTTTATACTTATAATGCGG+AGG + chr1.2:48474548-48474567 None:intergenic 30.0%
TTAATCAAGAGACGTGTAAA+AGG + chr1.2:48475339-48475358 None:intergenic 30.0%
TTATTTCACAAACCCTCTAA+TGG + chr1.2:48474621-48474640 None:intergenic 30.0%
TTCGTATGATATTGTTTACG+TGG - chr1.2:48475486-48475505 MS.gene064458:intron 30.0%
TTTACTTCATCATGTATCCT+TGG - chr1.2:48475446-48475465 MS.gene064458:intron 30.0%
TTTCAAAGGAAAAAGTGAAC+CGG + chr1.2:48475140-48475159 None:intergenic 30.0%
TTTCAGCTATTTGTCAACTA+TGG - chr1.2:48475594-48475613 MS.gene064458:intron 30.0%
TTTCCTAAAGTAGGAACATA+GGG - chr1.2:48474334-48474353 MS.gene064458:intron 30.0%
! GTTGTTCAAGGTAATTTTCT+AGG - chr1.2:48475275-48475294 MS.gene064458:intron 30.0%
! TTTTCCTAAAGTAGGAACAT+AGG - chr1.2:48474333-48474352 MS.gene064458:intron 30.0%
!! CAATTTTCAAGCAGTTTCAA+AGG + chr1.2:48475154-48475173 None:intergenic 30.0%
!! GTTAGTTTGTGTTTATAGTG+TGG - chr1.2:48474358-48474377 MS.gene064458:intron 30.0%
!! TGCTTTAAAATGCTTAAACC+GGG + chr1.2:48475862-48475881 None:intergenic 30.0%
!! TTTATTTCTCTTAAGTTGGG+TGG - chr1.2:48475061-48475080 MS.gene064458:intron 30.0%
!!! AATTTTCTAGGACTTTCATG+GGG - chr1.2:48475287-48475306 MS.gene064458:intron 30.0%
!!! AGTCCATTGATTTGAACTTT+TGG - chr1.2:48474514-48474533 MS.gene064458:intron 30.0%
!!! GTAATTTTCTAGGACTTTCA+TGG - chr1.2:48475285-48475304 MS.gene064458:intron 30.0%
AAACTCCTCCTACATTCAAA+AGG - chr1.2:48474875-48474894 MS.gene064458:intron 35.0%
AACAGAGTTTGTGCAATAAG+AGG + chr1.2:48474260-48474279 None:intergenic 35.0%
AACTAAGGTGCAATAAGTGA+TGG + chr1.2:48474426-48474445 None:intergenic 35.0%
AACTCATTATGGGAGTAAGT+TGG - chr1.2:48474830-48474849 MS.gene064458:intron 35.0%
AACTCCTCCTACATTCAAAA+GGG - chr1.2:48474876-48474895 MS.gene064458:intron 35.0%
AATAGCTGAAACAAAGATGC+AGG + chr1.2:48475585-48475604 None:intergenic 35.0%
ACAGAGTTTGTGCAATAAGA+GGG + chr1.2:48474259-48474278 None:intergenic 35.0%
ACGTCTCTTGATTAAAAGCT+TGG - chr1.2:48475344-48475363 MS.gene064458:intron 35.0%
AGAGGGTTTGTGAAATAAGA+GGG - chr1.2:48474623-48474642 MS.gene064458:intron 35.0%
AGGGTCAAAAGGAAAAAATG+TGG - chr1.2:48475534-48475553 MS.gene064458:intron 35.0%
AGTAAGCGTTAGTATTTCCT+AGG - chr1.2:48474769-48474788 MS.gene064458:intron 35.0%
AGTTTGTGTTTATAGTGTGG+AGG - chr1.2:48474361-48474380 MS.gene064458:intron 35.0%
ATCCTTGGCTGCTATAATTT+GGG - chr1.2:48475461-48475480 MS.gene064458:intron 35.0%
ATTAATCAGAATGGGTCACA+TGG - chr1.2:48476171-48476190 MS.gene064458:CDS 35.0%
CAAAGAGGCAATTCAATCTT+GGG + chr1.2:48475246-48475265 None:intergenic 35.0%
CAGTTCTTTGTTGAATCATC+TGG - chr1.2:48476228-48476247 MS.gene064458:CDS 35.0%
CATAGAATCGTTTGCTTCAA+TGG - chr1.2:48475653-48475672 MS.gene064458:intron 35.0%
CGTCTCTTGATTAAAAGCTT+GGG - chr1.2:48475345-48475364 MS.gene064458:intron 35.0%
GATATTGTTTACGTGGCTAA+TGG - chr1.2:48475493-48475512 MS.gene064458:intron 35.0%
GGGTCAAAAGGAAAAAATGT+GGG - chr1.2:48475535-48475554 MS.gene064458:intron 35.0%
GGTCAAAAGGAAAAAATGTG+GGG - chr1.2:48475536-48475555 MS.gene064458:intron 35.0%
GGTCCAAAAGTTCAAATCAA+TGG + chr1.2:48474520-48474539 None:intergenic 35.0%
GTAAGCGTTAGTATTTCCTA+GGG - chr1.2:48474770-48474789 MS.gene064458:intron 35.0%
GTCAAAAGGAAAAAATGTGG+GGG - chr1.2:48475537-48475556 MS.gene064458:intron 35.0%
TAAAAGGATATAAAGAGGCC+TGG + chr1.2:48475323-48475342 None:intergenic 35.0%
TAGAGGGTTTGTGAAATAAG+AGG - chr1.2:48474622-48474641 MS.gene064458:intron 35.0%
TATCCTTGGCTGCTATAATT+TGG - chr1.2:48475460-48475479 MS.gene064458:intron 35.0%
TATCTGTACTACACAGTATG+AGG - chr1.2:48475413-48475432 MS.gene064458:intron 35.0%
TCAAAAGGAAAAAATGTGGG+GGG - chr1.2:48475538-48475557 MS.gene064458:intron 35.0%
TCTTATTGCACAAACTCTGT+TGG - chr1.2:48474259-48474278 MS.gene064458:intron 35.0%
TGAAACTGCTTGAAAATTGC+AGG - chr1.2:48475155-48475174 MS.gene064458:intron 35.0%
TGAGTGTCATCTTATTGACA+TGG + chr1.2:48474961-48474980 None:intergenic 35.0%
TGTGGGAACAAGAAAAACTA+AGG + chr1.2:48474441-48474460 None:intergenic 35.0%
TTCAACCAGTCTAGAAATGT+TGG - chr1.2:48474114-48474133 MS.gene064458:CDS 35.0%
TTTACTAGAACCACAAGACT+TGG + chr1.2:48474858-48474877 None:intergenic 35.0%
TTTATGGAACTCTCCCAATT+TGG - chr1.2:48474282-48474301 MS.gene064458:intron 35.0%
! AAAATTGCAGGAGAAGTACA+AGG - chr1.2:48475167-48475186 MS.gene064458:intron 35.0%
! AATACATTTTTCTGTGTCGC+CGG - chr1.2:48475118-48475137 MS.gene064458:intron 35.0%
! ACTAAGGTGTTTATAAGTGG+TGG - chr1.2:48474483-48474502 MS.gene064458:intron 35.0%
! AGTTTTTCTTGTTCCCACAT+TGG - chr1.2:48474442-48474461 MS.gene064458:intron 35.0%
! GATTTGAACTTTTGGACCAT+GGG - chr1.2:48474522-48474541 MS.gene064458:intron 35.0%
! TGATTTGAACTTTTGGACCA+TGG - chr1.2:48474521-48474540 MS.gene064458:intron 35.0%
!! ACAAACCCTCTAATGGATTA+TGG + chr1.2:48474614-48474633 None:intergenic 35.0%
!! AGTCCATTGATTCGAACTTT+AGG + chr1.2:48474395-48474414 None:intergenic 35.0%
AAACGGACAGAAATAGTCGT+TGG - chr1.2:48474017-48474036 MS.gene064458:CDS 40.0%
AACAACTGAACAAGCCAAAG+AGG + chr1.2:48475261-48475280 None:intergenic 40.0%
AACCAAACCAGACATTGAAC+TGG + chr1.2:48475909-48475928 None:intergenic 40.0%
AACCAGTCTAGAAATGTTGG+TGG - chr1.2:48474117-48474136 MS.gene064458:CDS 40.0%
AACGGACAGAAATAGTCGTT+GGG - chr1.2:48474018-48474037 MS.gene064458:CDS 40.0%
AAGAGGGAAAACTTCTATGC+AGG - chr1.2:48474639-48474658 MS.gene064458:intron 40.0%
AAGAGGGAAAACTTCTATGC+AGG + chr1.2:48474658-48474639 None:intergenic 40.0%
AAGATGCAGGATTTGATTCC+CGG + chr1.2:48475572-48475591 None:intergenic 40.0%
AATTCCTACAGCTCCACAAA+CGG - chr1.2:48474000-48474019 MS.gene064458:CDS 40.0%
ACCAGTCTAGAAATGTTGGT+GGG - chr1.2:48474118-48474137 MS.gene064458:CDS 40.0%
ACTCCCTATGTTCCTACTTT+AGG + chr1.2:48474340-48474359 None:intergenic 40.0%
ACTGAAATGGATGGTTCAAC+CGG - chr1.2:48475807-48475826 MS.gene064458:intron 40.0%
AGAGTTCCAGCAACAATAAC+CGG + chr1.2:48475210-48475229 None:intergenic 40.0%
AGATTGTGTCAGGTCGAAAT+TGG + chr1.2:48475377-48475396 None:intergenic 40.0%
AGCTGCTCAATAGTTGTGTA+CGG + chr1.2:48476133-48476152 None:intergenic 40.0%
AGTACAAGGACTTTCATGGT+AGG - chr1.2:48475181-48475200 MS.gene064458:intron 40.0%
ATCCCAAATTATAGCAGCCA+AGG + chr1.2:48475466-48475485 None:intergenic 40.0%
ATGTTCCCACACTCCAAATT+GGG + chr1.2:48474298-48474317 None:intergenic 40.0%
CATCTTATTGACATGGAGCA+TGG + chr1.2:48474954-48474973 None:intergenic 40.0%
CCAAAGAGGCAATTCAATCT+TGG + chr1.2:48475247-48475266 None:intergenic 40.0%
CCAAGATTGAATTGCCTCTT+TGG - chr1.2:48475244-48475263 MS.gene064458:intron 40.0%
CGACCTGACACAATCTATAT+TGG - chr1.2:48475381-48475400 MS.gene064458:intron 40.0%
CTGTGCCATAATCCATTAGA+GGG - chr1.2:48474606-48474625 MS.gene064458:CDS 40.0%
GAAAGAGACCATTTGCTCTT+TGG - chr1.2:48476104-48476123 MS.gene064458:intron 40.0%
GGTCCTAAAGTTCGAATCAA+TGG - chr1.2:48474389-48474408 MS.gene064458:intron 40.0%
GTGCCAATATAGATTGTGTC+AGG + chr1.2:48475387-48475406 None:intergenic 40.0%
TATGTTCCCACACTCCAAAT+TGG + chr1.2:48474299-48474318 None:intergenic 40.0%
TTATGCAGTGTAGTAGCTAC+TGG - chr1.2:48475967-48475986 MS.gene064458:intron 40.0%
TTCTTTGTTCCCTCCAATGT+GGG + chr1.2:48474458-48474477 None:intergenic 40.0%
TTTCTTGTTCCCACATTGGA+GGG - chr1.2:48474446-48474465 MS.gene064458:intron 40.0%
TTTCTTTGTTCCCTCCAATG+TGG + chr1.2:48474459-48474478 None:intergenic 40.0%
! CCTCTAAAAATTGACTGCAC+TGG - chr1.2:48474918-48474937 MS.gene064458:intron 40.0%
! GAGAAGTACAAGGACTTTCA+TGG - chr1.2:48475177-48475196 MS.gene064458:intron 40.0%
! TCCTACATTCAAAAGGGTGT+GGG - chr1.2:48474882-48474901 MS.gene064458:intron 40.0%
! TTTTCTTGTTCCCACATTGG+AGG - chr1.2:48474445-48474464 MS.gene064458:intron 40.0%
!! CCAGTGCAGTCAATTTTTAG+AGG + chr1.2:48474921-48474940 None:intergenic 40.0%
!! GATTCGAACTTTAGGACCAT+GGG + chr1.2:48474387-48474406 None:intergenic 40.0%
!! GCACAAACTCTGTTGGTTTA+TGG - chr1.2:48474266-48474285 MS.gene064458:intron 40.0%
!! TGATTCGAACTTTAGGACCA+TGG + chr1.2:48474388-48474407 None:intergenic 40.0%
!! TTCTCTTAAGTTGGGTGGTT+TGG - chr1.2:48475066-48475085 MS.gene064458:intron 40.0%
!! TTGGCTTGTTCAGTTGTTCA+AGG - chr1.2:48475263-48475282 MS.gene064458:intron 40.0%
AAAAAATGTGGGGGGATGAC+TGG - chr1.2:48475546-48475565 MS.gene064458:intron 45.0%
AACGAAAATGACACTGCCCT+AGG + chr1.2:48474789-48474808 None:intergenic 45.0%
CCAGTCTAGAAATGTTGGTG+GGG - chr1.2:48474119-48474138 MS.gene064458:CDS 45.0%
CCTGTGCCATAATCCATTAG+AGG - chr1.2:48474605-48474624 MS.gene064458:CDS 45.0%
CTAATGTCCACATTCTGCAG+AGG - chr1.2:48476062-48476081 MS.gene064458:intron 45.0%
CTCCTACATTCAAAAGGGTG+TGG - chr1.2:48474881-48474900 MS.gene064458:intron 45.0%
GCTGCTCAATAGTTGTGTAC+GGG + chr1.2:48476132-48476151 None:intergenic 45.0%
GGAGCTGTAGGAATTGTAAC+AGG + chr1.2:48473995-48474014 None:intergenic 45.0%
GTTCTTGCCAGTTCAATGTC+TGG - chr1.2:48475899-48475918 MS.gene064458:intron 45.0%
TACGGGAACCAAAGAGCAAA+TGG + chr1.2:48476115-48476134 None:intergenic 45.0%
TGCCAGTTCAATGTCTGGTT+TGG - chr1.2:48475904-48475923 MS.gene064458:intron 45.0%
! AACTCTCCCAATTTGGAGTG+TGG - chr1.2:48474289-48474308 MS.gene064458:intron 45.0%
! ACAGGCCCAATTTAGAGTGT+AGG + chr1.2:48474590-48474609 None:intergenic 45.0%
! ACTCTCCCAATTTGGAGTGT+GGG - chr1.2:48474290-48474309 MS.gene064458:intron 45.0%
! CACACCCTTTTGAATGTAGG+AGG + chr1.2:48474883-48474902 None:intergenic 45.0%
! TAAGTTGGAGCCAAGTCTTG+TGG - chr1.2:48474845-48474864 MS.gene064458:intron 45.0%
! TCTAGAAATGTTGGTGGGGA+GGG - chr1.2:48474123-48474142 MS.gene064458:CDS 45.0%
!! AGTTGGGTGGTTTGGTTGTT+CGG - chr1.2:48475074-48475093 MS.gene064458:intron 45.0%
!! CCTCTAATGGATTATGGCAC+AGG + chr1.2:48474608-48474627 None:intergenic 45.0%
!! CGACTATTTCTGTCCGTTTG+TGG + chr1.2:48474016-48474035 None:intergenic 45.0%
!!! AATGGCTTGTCACTTTTGGC+AGG - chr1.2:48475511-48475530 MS.gene064458:intron 45.0%
!!! GGCTAATGGCTTGTCACTTT+TGG - chr1.2:48475507-48475526 MS.gene064458:intron 45.0%
ACTGGCAAGAACTCGAGTCA+TGG + chr1.2:48475891-48475910 None:intergenic 50.0%
ACTGGCACTGTCTATAGTCC+CGG - chr1.2:48475841-48475860 MS.gene064458:intron 50.0%
ACTTATAATGCGGAGGCCCA+TGG + chr1.2:48474541-48474560 None:intergenic 50.0%
CAACCGGTTGAACTGTGAAC+TGG - chr1.2:48475823-48475842 MS.gene064458:intron 50.0%
GGACTTTCATGGTAGGTTGC+CGG - chr1.2:48475188-48475207 MS.gene064458:intron 50.0%
GTGCCAGTTCACAGTTCAAC+CGG + chr1.2:48475829-48475848 None:intergenic 50.0%
GTTTATAGTGTGGAGGCCCA+TGG - chr1.2:48474368-48474387 MS.gene064458:intron 50.0%
TCATGGGGATGCTAACATCC+AGG - chr1.2:48475302-48475321 MS.gene064458:intron 50.0%
! ACATTCAAAAGGGTGTGGGC+AGG - chr1.2:48474886-48474905 MS.gene064458:intron 50.0%
! AGGTTGCCGGTTATTGTTGC+TGG - chr1.2:48475201-48475220 MS.gene064458:intron 50.0%
! CCCCACCAACATTTCTAGAC+TGG + chr1.2:48474122-48474141 None:intergenic 50.0%
! CTAGAAATGTTGGTGGGGAG+GGG - chr1.2:48474124-48474143 MS.gene064458:CDS 50.0%
! CTTTTGGCAGGAGGGTCAAA+AGG - chr1.2:48475523-48475542 MS.gene064458:intron 50.0%
! GCCCACACCCTTTTGAATGT+AGG + chr1.2:48474886-48474905 None:intergenic 50.0%
! GTCTAGAAATGTTGGTGGGG+AGG - chr1.2:48474122-48474141 MS.gene064458:CDS 50.0%
! TAGAAATGTTGGTGGGGAGG+GGG - chr1.2:48474125-48474144 MS.gene064458:CDS 50.0%
!!! GCTTGTCACTTTTGGCAGGA+GGG - chr1.2:48475515-48475534 MS.gene064458:intron 50.0%
CTGTCCGTTTGTGGAGCTGT+AGG + chr1.2:48474007-48474026 None:intergenic 55.0%
! AGAAATGTTGGTGGGGAGGG+GGG - chr1.2:48474126-48474145 MS.gene064458:CDS 55.0%
!!! GGCTTGTCACTTTTGGCAGG+AGG - chr1.2:48475514-48475533 MS.gene064458:intron 55.0%
AATGTGGGGGGATGACTGGC+CGG - chr1.2:48475550-48475569 MS.gene064458:intron 60.0%
! CTGCTGGCCTCTGCAGAATG+TGG + chr1.2:48476072-48476091 None:intergenic 60.0%
! ATGTGGGGGGATGACTGGCC+GGG - chr1.2:48475551-48475570 MS.gene064458:intron 65.0%
GTGGGGAGGGGGGCCGTGAT+TGG - chr1.2:48474136-48474155 MS.gene064458:intron 75.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 48473974 48476255 48473974 ID=MS.gene064458
chr1.2 mRNA 48473974 48476255 48473974 ID=MS.gene064458.t1;Parent=MS.gene064458
chr1.2 exon 48476169 48476255 48476169 ID=MS.gene064458.t1.exon1;Parent=MS.gene064458.t1
chr1.2 CDS 48476169 48476255 48476169 ID=cds.MS.gene064458.t1;Parent=MS.gene064458.t1
chr1.2 exon 48474945 48475052 48474945 ID=MS.gene064458.t1.exon2;Parent=MS.gene064458.t1
chr1.2 CDS 48474945 48475052 48474945 ID=cds.MS.gene064458.t1;Parent=MS.gene064458.t1
chr1.2 exon 48474555 48474629 48474555 ID=MS.gene064458.t1.exon3;Parent=MS.gene064458.t1
chr1.2 CDS 48474555 48474629 48474555 ID=cds.MS.gene064458.t1;Parent=MS.gene064458.t1
chr1.2 exon 48473974 48474147 48473974 ID=MS.gene064458.t1.exon4;Parent=MS.gene064458.t1
chr1.2 CDS 48473974 48474147 48473974 ID=cds.MS.gene064458.t1;Parent=MS.gene064458.t1
Gene Sequence

>MS.gene064458

ATGGTTGTTCATGGTTCACCTGTTACAATTCCTACAGCTCCACAAACGGACAGAAATAGTCGTTGGGCAAATCTCAAGCTTTATCTTGTTCGTATCTTCTCCTCTTTTATATGTTAGCCTTTAGTTGATTTTATTCTATGTTCAACCAGTCTAGAAATGTTGGTGGGGAGGGGGGCCGTGATTGGAGAAATTTTCATACAGAAAAATTAATACTCGTGATACTTACTGAAAAAACATAACTACTCAACTTGATCATAAAATATACACCTGCATAGAAGTTTTCCCTCTTATTGCACAAACTCTGTTGGTTTATGGAACTCTCCCAATTTGGAGTGTGGGAACATAGTGAGTTTTTTTTTTTTTCCTAAAGTAGGAACATAGGGAGTTAGTTTGTGTTTATAGTGTGGAGGCCCATGGTCCTAAAGTTCGAATCAATGGACTCAAACTCTCCATCACTTATTGCACCTTAGTTTTTCTTGTTCCCACATTGGAGGGAACAAAGAAAGAAAACTAAGGTGTTTATAAGTGGTGGAGAATTTGAGTCCATTGATTTGAACTTTTGGACCATGGGCCTCCGCATTATAAGTATAAACACAAACTAACTGGCTATGTTCCTACACTCTAAATTGGGCCTGTGCCATAATCCATTAGAGGGTTTGTGAAATAAGAGGGAAAACTTCTATGCAGGTGTATATTTTGAGATCAAGTTGAGAAGTTAAGTTTTTTCAATAAGTATCAAGATTATTAGTTATTTTGTTAGAAAATAAATTTATTATGGAAGATAATTTTTTTTTAAGTAAGCGTTAGTATTTCCTAGGGCAGTGTCATTTTCGTTTGACTTTTTTATTTTATCTGTAACTCATTATGGGAGTAAGTTGGAGCCAAGTCTTGTGGTTCTAGTAAACTCCTCCTACATTCAAAAGGGTGTGGGCAGGAATTTAAAGCCTCTAAAAATTGACTGCACTGGAAATAGTATACCATGCTCCATGTCAATAAGATGACACTCATTTGAACCTTATTCAGCTGTATAGATGATTTTATATGGTTGTTTCCTGTGCTCTAATATATTTCTCATGATGCTTGATAATTTATTTCTCTTAAGTTGGGTGGTTTGGTTGTTCGGTTTCTTATTTATTTGAAAAAAAATACATTTTTCTGTGTCGCCGGTTCACTTTTTCCTTTGAAACTGCTTGAAAATTGCAGGAGAAGTACAAGGACTTTCATGGTAGGTTGCCGGTTATTGTTGCTGGAACTCTTCTTCGAGCTGATCCCAAGATTGAATTGCCTCTTTGGCTTGTTCAGTTGTTCAAGGTAATTTTCTAGGACTTTCATGGGGATGCTAACATCCAGGCCTCTTTATATCCTTTTACACGTCTCTTGATTAAAAGCTTGGGCAGCAACCAATTTCGACCTGACACAATCTATATTGGCACATCTTGTATCTGTACTACACAGTATGAGGAATGAACTTTTTTACTTCATCATGTATCCTTGGCTGCTATAATTTGGGATTTCGTATGATATTGTTTACGTGGCTAATGGCTTGTCACTTTTGGCAGGAGGGTCAAAAGGAAAAAATGTGGGGGGATGACTGGCCGGGAATCAAATCCTGCATCTTTGTTTCAGCTATTTGTCAACTATGGTCGATATGCAGAAGCTACTTATCTTTTACTCGAGTACATAGAATCGTTTGCTTCAATGGTAAATCACTTTTTTACTACTACGGATTGAATATATTACTGTTATCATTGAAATTGGATAGAATCATTTGCTCAGCTTGTATGATGTACACATTCAATCACTTTTATCATTAGAGTTCCTAATGTTCTTAAAACTGAAATGGATGGTTCAACCGGTTGAACTGTGAACTGGCACTGTCTATAGTCCCGGTTTAAGCATTTTAAAGCAATTGAACCATGACTCGAGTTCTTGCCAGTTCAATGTCTGGTTTGGTTTTTAAAACATTGGATATGACAACATAAATTTGCATGATTTATGCAGTGTAGTAGCTACTGGCAAATTTATGCAGCACATGATATTTATTTCATGGTGCTACAACAGTGATATGTTGTGCATTCACTTATGTTGCTAATGTCCACATTCTGCAGAGGCCAGCAGATATAATTAAAAGAAAGAGACCATTTGCTCTTTGGTTCCCGTACACAACTATTGAGCAGCTACTGCACCAACTTGAAGAATTAATCAGAATGGGTCACATGGTTGATCACTGTGACAAGCTCAAAAAGATGTTACACAGTTCTTTGTTGAATCATCTGGAGATG
Protein sequence

>MS.gene064458.t1

MVVHGSPVTIPTAPQTDRNSRWANLKLYLEKYKDFHGRLPVIVAGTLLRADPKIELPLWLVQLFKLFVNYGRYAEATYLLLEYIESFASMRPADIIKRKRPFALWFPYTTIEQLLHQLEELIRMGHMVDHCDKLKKMLHSSLLNHLEM