Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene06462.t1 | PON83538.1 | 72.8 | 514 | 80 | 5 | 17 | 482 | 228 | 729 | 3.20E-196 | 694.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene06462.t1 | Q5RC80 | 43.8 | 388 | 193 | 10 | 2 | 384 | 133 | 500 | 2.5e-69 | 264.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene06462.t1 | A0A2P5EDC2 | 72.8 | 514 | 80 | 5 | 17 | 482 | 228 | 729 | 2.3e-196 | 694.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049255 | MS.gene06462 | 0.810962 | 8.88E-51 | -1.69E-46 |
MS.gene055162 | MS.gene06462 | 0.801745 | 7.79E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene06462 | MS.gene064542 | PPI |
MS.gene06462 | MS.gene55683 | PPI |
MS.gene049629 | MS.gene06462 | PPI |
MS.gene06462 | MS.gene73119 | PPI |
MS.gene06462 | MS.gene008393 | PPI |
MS.gene035805 | MS.gene06462 | PPI |
MS.gene05085 | MS.gene06462 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene06462.t1 | MTR_3g095230 | 99.482 | 386 | 2 | 0 | 1 | 386 | 191 | 576 | 0.0 | 809 |
MS.gene06462.t1 | MTR_3g095230 | 99.221 | 385 | 3 | 0 | 1 | 385 | 191 | 575 | 0.0 | 805 |
MS.gene06462.t1 | MTR_8g092550 | 84.156 | 385 | 52 | 3 | 2 | 385 | 179 | 555 | 0.0 | 674 |
MS.gene06462.t1 | MTR_3g095240 | 96.825 | 189 | 6 | 0 | 380 | 568 | 37 | 225 | 1.61e-128 | 376 |
MS.gene06462.t1 | MTR_3g095260 | 91.713 | 181 | 15 | 0 | 380 | 560 | 37 | 217 | 5.10e-80 | 252 |
MS.gene06462.t1 | MTR_3g095250 | 89.617 | 183 | 17 | 1 | 380 | 560 | 37 | 219 | 9.55e-68 | 219 |
MS.gene06462.t1 | MTR_7g059030 | 58.491 | 106 | 44 | 0 | 380 | 485 | 37 | 142 | 1.74e-33 | 131 |
MS.gene06462.t1 | MTR_4g031680 | 21.851 | 389 | 213 | 14 | 22 | 383 | 237 | 561 | 7.69e-14 | 74.7 |
MS.gene06462.t1 | MTR_4g104470 | 27.027 | 185 | 122 | 5 | 19 | 201 | 117 | 290 | 4.77e-12 | 67.4 |
MS.gene06462.t1 | MTR_3g065190 | 29.032 | 186 | 109 | 7 | 21 | 201 | 20 | 187 | 6.89e-12 | 67.8 |
MS.gene06462.t1 | MTR_5g097580 | 26.667 | 180 | 117 | 4 | 21 | 191 | 2 | 175 | 6.93e-12 | 68.2 |
MS.gene06462.t1 | MTR_5g097580 | 26.667 | 180 | 117 | 4 | 21 | 191 | 2 | 175 | 9.01e-12 | 68.2 |
MS.gene06462.t1 | MTR_3g055990 | 28.889 | 180 | 113 | 6 | 21 | 191 | 2 | 175 | 2.22e-11 | 66.6 |
MS.gene06462.t1 | MTR_4g122650 | 28.736 | 174 | 103 | 5 | 27 | 195 | 90 | 247 | 2.32e-11 | 67.0 |
MS.gene06462.t1 | MTR_3g055990 | 28.889 | 180 | 113 | 6 | 21 | 191 | 2 | 175 | 2.38e-11 | 66.6 |
MS.gene06462.t1 | MTR_6g004810 | 27.564 | 156 | 99 | 2 | 45 | 200 | 65 | 206 | 3.42e-11 | 65.9 |
MS.gene06462.t1 | MTR_2g026180 | 26.630 | 184 | 124 | 4 | 23 | 198 | 2 | 182 | 3.66e-11 | 65.9 |
MS.gene06462.t1 | MTR_1g064230 | 27.570 | 214 | 135 | 8 | 4 | 201 | 61 | 270 | 5.85e-11 | 63.9 |
MS.gene06462.t1 | MTR_3g084040 | 38.462 | 78 | 47 | 1 | 128 | 205 | 37 | 113 | 7.18e-11 | 60.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene06462.t1 | AT5G09880 | 74.359 | 390 | 73 | 8 | 2 | 384 | 147 | 516 | 0.0 | 542 |
MS.gene06462.t1 | AT2G16940 | 64.010 | 389 | 130 | 6 | 4 | 384 | 19 | 405 | 1.77e-160 | 464 |
MS.gene06462.t1 | AT2G16940 | 64.010 | 389 | 130 | 6 | 4 | 384 | 19 | 405 | 1.77e-160 | 464 |
MS.gene06462.t1 | AT2G16940 | 63.918 | 388 | 130 | 6 | 5 | 384 | 210 | 595 | 1.88e-157 | 464 |
MS.gene06462.t1 | AT2G16940 | 64.042 | 381 | 128 | 5 | 11 | 384 | 168 | 546 | 4.24e-157 | 461 |
MS.gene06462.t1 | AT2G16940 | 62.374 | 396 | 130 | 7 | 6 | 384 | 191 | 584 | 9.02e-154 | 454 |
MS.gene06462.t1 | AT1G76010 | 70.833 | 120 | 31 | 2 | 375 | 490 | 29 | 148 | 6.63e-45 | 162 |
MS.gene06462.t1 | AT1G76010 | 70.833 | 120 | 31 | 2 | 375 | 490 | 29 | 148 | 6.63e-45 | 162 |
MS.gene06462.t1 | AT3G07030 | 58.586 | 99 | 41 | 0 | 380 | 478 | 37 | 135 | 9.81e-31 | 124 |
MS.gene06462.t1 | AT3G07030 | 58.586 | 99 | 41 | 0 | 380 | 478 | 37 | 135 | 9.81e-31 | 124 |
MS.gene06462.t1 | AT3G07030 | 58.586 | 99 | 41 | 0 | 380 | 478 | 37 | 135 | 1.11e-30 | 124 |
MS.gene06462.t1 | AT3G07030 | 58.586 | 99 | 41 | 0 | 380 | 478 | 37 | 135 | 3.03e-30 | 123 |
MS.gene06462.t1 | AT3G07030 | 58.586 | 99 | 41 | 0 | 380 | 478 | 37 | 135 | 6.37e-30 | 123 |
MS.gene06462.t1 | AT1G48920 | 28.070 | 171 | 115 | 3 | 25 | 189 | 297 | 465 | 4.82e-14 | 75.5 |
MS.gene06462.t1 | AT3G07810 | 28.333 | 180 | 116 | 4 | 21 | 191 | 2 | 177 | 6.87e-13 | 71.6 |
MS.gene06462.t1 | AT3G07810 | 28.333 | 180 | 116 | 4 | 21 | 191 | 2 | 177 | 7.68e-13 | 71.6 |
MS.gene06462.t1 | AT4G16280 | 30.460 | 174 | 100 | 5 | 27 | 195 | 47 | 204 | 9.53e-13 | 71.6 |
MS.gene06462.t1 | AT4G16280 | 30.460 | 174 | 100 | 5 | 27 | 195 | 122 | 279 | 1.16e-12 | 70.9 |
MS.gene06462.t1 | AT4G16280 | 30.460 | 174 | 100 | 5 | 27 | 195 | 122 | 279 | 1.16e-12 | 71.2 |
MS.gene06462.t1 | AT3G18610 | 32.692 | 156 | 92 | 5 | 25 | 175 | 324 | 471 | 3.42e-12 | 69.7 |
MS.gene06462.t1 | AT3G18610 | 32.692 | 156 | 92 | 5 | 25 | 175 | 354 | 501 | 4.72e-12 | 69.3 |
MS.gene06462.t1 | AT3G18610 | 32.692 | 156 | 92 | 5 | 25 | 175 | 384 | 531 | 5.73e-12 | 68.9 |
MS.gene06462.t1 | AT5G54900 | 26.630 | 184 | 119 | 5 | 25 | 201 | 154 | 328 | 9.08e-12 | 67.4 |
MS.gene06462.t1 | AT2G37220 | 41.250 | 80 | 45 | 2 | 124 | 202 | 88 | 166 | 1.09e-11 | 66.2 |
MS.gene06462.t1 | AT2G41060 | 26.738 | 187 | 122 | 4 | 4 | 184 | 107 | 284 | 2.53e-11 | 66.6 |
MS.gene06462.t1 | AT2G41060 | 26.738 | 187 | 122 | 4 | 4 | 184 | 107 | 284 | 2.53e-11 | 66.6 |
MS.gene06462.t1 | AT2G41060 | 26.738 | 187 | 122 | 4 | 4 | 184 | 107 | 284 | 2.53e-11 | 66.6 |
MS.gene06462.t1 | AT1G22760 | 30.114 | 176 | 104 | 6 | 18 | 191 | 42 | 200 | 3.45e-11 | 66.6 |
MS.gene06462.t1 | AT4G34110 | 27.976 | 168 | 103 | 5 | 26 | 191 | 37 | 188 | 3.46e-11 | 66.6 |
MS.gene06462.t1 | AT4G27000 | 26.087 | 184 | 127 | 4 | 21 | 201 | 169 | 346 | 3.59e-11 | 65.9 |
MS.gene06462.t1 | AT5G55550 | 26.667 | 195 | 132 | 4 | 21 | 205 | 2 | 195 | 4.41e-11 | 65.9 |
MS.gene06462.t1 | AT5G55550 | 26.667 | 195 | 132 | 4 | 21 | 205 | 2 | 195 | 4.41e-11 | 65.9 |
MS.gene06462.t1 | AT5G55550 | 26.667 | 195 | 132 | 4 | 21 | 205 | 2 | 195 | 4.41e-11 | 65.9 |
MS.gene06462.t1 | AT5G55550 | 26.667 | 195 | 132 | 4 | 21 | 205 | 2 | 195 | 4.41e-11 | 65.9 |
MS.gene06462.t1 | AT5G55550 | 26.667 | 195 | 132 | 4 | 21 | 205 | 2 | 195 | 4.41e-11 | 65.9 |
MS.gene06462.t1 | AT5G55550 | 26.667 | 195 | 132 | 4 | 21 | 205 | 2 | 195 | 4.48e-11 | 65.9 |
MS.gene06462.t1 | AT5G55550 | 26.667 | 195 | 132 | 4 | 21 | 205 | 2 | 195 | 4.48e-11 | 65.9 |
MS.gene06462.t1 | AT5G55550 | 26.667 | 195 | 132 | 4 | 21 | 205 | 2 | 195 | 4.48e-11 | 65.9 |
MS.gene06462.t1 | AT5G55550 | 26.667 | 195 | 132 | 4 | 21 | 205 | 2 | 195 | 4.48e-11 | 65.9 |
MS.gene06462.t1 | AT3G52380 | 42.222 | 90 | 45 | 1 | 112 | 201 | 108 | 190 | 4.57e-11 | 65.1 |
MS.gene06462.t1 | AT4G26650 | 26.866 | 201 | 125 | 5 | 14 | 198 | 1 | 195 | 5.56e-11 | 65.5 |
MS.gene06462.t1 | AT1G60000 | 32.743 | 113 | 67 | 3 | 90 | 201 | 55 | 159 | 7.54e-11 | 63.5 |
MS.gene06462.t1 | AT4G26650 | 27.000 | 200 | 124 | 5 | 15 | 198 | 5 | 198 | 8.48e-11 | 64.7 |
Find 183 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATCCCTTTCTGTAGCCTTTA+AGG | 0.079065 | 3.2:-79615436 | None:intergenic |
TCCTCTTCATATTCATTTAA+AGG | 0.086684 | 3.2:-79622899 | None:intergenic |
GTGCATGGGGTCGTGCTTTC+CGG | 0.114627 | 3.2:+79623498 | MS.gene06462:CDS |
ACAGTTCTTTGATCCCTTTC+TGG | 0.126170 | 3.2:-79615288 | None:intergenic |
ATGTGAATTGCAGGAGATTT+AGG | 0.155732 | 3.2:+79615232 | MS.gene06462:intron |
ATAATTACAGATGCCCTTAA+AGG | 0.230539 | 3.2:+79615422 | MS.gene06462:intron |
ACTGGACATTGCAAGGGTTT+TGG | 0.231301 | 3.2:+79617313 | MS.gene06462:CDS |
GAAGAAGAGTGTTCTAAATA+TGG | 0.235539 | 3.2:+79618926 | MS.gene06462:CDS |
CAGCCTTGGCATGCTCTATA+TGG | 0.253974 | 3.2:-79617438 | None:intergenic |
CCAGAGTTTAAATGGAAAAT+TGG | 0.255637 | 3.2:+79617462 | MS.gene06462:CDS |
CTGCATCAGAACACTATTAT+TGG | 0.280228 | 3.2:+79622040 | MS.gene06462:CDS |
TGTGAATTGCAGGAGATTTA+GGG | 0.295766 | 3.2:+79615233 | MS.gene06462:intron |
CTTCAATAGCAAACACTTGC+TGG | 0.302214 | 3.2:-79618756 | None:intergenic |
TTCCGACAGGTTCGGCCACT+TGG | 0.305919 | 3.2:-79618730 | None:intergenic |
AAGGCTGCCCAGAGTTTAAA+TGG | 0.307074 | 3.2:+79617454 | MS.gene06462:CDS |
GCAGAGGGCGTGGCCGTGCA+TGG | 0.313343 | 3.2:+79623483 | MS.gene06462:CDS |
TGCATGGGGTCGTGCTTTCC+GGG | 0.322620 | 3.2:+79623499 | MS.gene06462:CDS |
CGTGGAAGGGGCAGGGGTAG+AGG | 0.333283 | 3.2:+79623057 | MS.gene06462:CDS |
CAGAGGGCGTGGCCGTGCAT+GGG | 0.335065 | 3.2:+79623484 | MS.gene06462:CDS |
TCCCTTTCTGTAGCCTTTAA+GGG | 0.338234 | 3.2:-79615435 | None:intergenic |
CGTGGCCGTGGAAGGGGCAG+GGG | 0.338950 | 3.2:+79623051 | MS.gene06462:CDS |
GACGATTACTGAGCTAATTA+AGG | 0.344294 | 3.2:+79621910 | MS.gene06462:CDS |
AGGGGCAGGGGTAGAGGTAG+AGG | 0.349329 | 3.2:+79623063 | MS.gene06462:CDS |
GCATAAGCAATGCTCTTGAT+TGG | 0.351502 | 3.2:-79618472 | None:intergenic |
CTCTCTGGCCAACTTCTTCT+AGG | 0.365937 | 3.2:+79616827 | MS.gene06462:CDS |
AATGGAAAATTGGAAATTGC+TGG | 0.369256 | 3.2:+79617472 | MS.gene06462:CDS |
GCTATGGTGCCCAGCCGGTT+GGG | 0.375717 | 3.2:+79623534 | MS.gene06462:CDS |
CCGGCTATTAGTTTGCCTAT+TGG | 0.375879 | 3.2:+79618635 | MS.gene06462:CDS |
GGCGTGGCCGTGGAAGGGGC+AGG | 0.382595 | 3.2:+79623049 | MS.gene06462:CDS |
TGCTTACCGCGTGGGGCAGG+TGG | 0.392941 | 3.2:-79623584 | None:intergenic |
CTCTCGCATGCTTACCGCGT+GGG | 0.394080 | 3.2:-79623592 | None:intergenic |
TTGTGTCTTGACTTCCAATA+TGG | 0.395295 | 3.2:-79617621 | None:intergenic |
CCAATGGCAATTGCCCTCTC+TGG | 0.397227 | 3.2:+79616812 | MS.gene06462:CDS |
TTGATGTCTAGATCAAAATC+TGG | 0.408142 | 3.2:-79618893 | None:intergenic |
CAGATATCAACCTCCTCTTC+CGG | 0.410668 | 3.2:+79622862 | MS.gene06462:intron |
GGCTATGGTGCCCAGCCGGT+TGG | 0.410845 | 3.2:+79623533 | MS.gene06462:CDS |
TCCCTTTCTGGATCTGCCTC+AGG | 0.411587 | 3.2:-79615276 | None:intergenic |
TATGAATTCTTCTCAAAAGC+TGG | 0.417795 | 3.2:+79615462 | MS.gene06462:CDS |
GCTTACCGCGTGGGGCAGGT+GGG | 0.418616 | 3.2:-79623583 | None:intergenic |
TCATCTGTAGCAGACCATAT+TGG | 0.422583 | 3.2:+79617607 | MS.gene06462:CDS |
AGTTTGCCTATTGGTAATCC+TGG | 0.423121 | 3.2:+79618644 | MS.gene06462:CDS |
AGCATTGGTTTACCCATGAA+TGG | 0.423759 | 3.2:+79618596 | MS.gene06462:intron |
GCTCGCCAAGGATGCGAGGA+AGG | 0.425647 | 3.2:+79623025 | MS.gene06462:CDS |
CTTCCACTTGACCTGGAGAC+TGG | 0.437956 | 3.2:+79617295 | MS.gene06462:CDS |
TCTTTGTAGGAATGTACAAT+GGG | 0.439627 | 3.2:+79623414 | MS.gene06462:intron |
GCATGCTTACCGCGTGGGGC+AGG | 0.444268 | 3.2:-79623587 | None:intergenic |
AGCAGGAGCCAACCCATTCA+TGG | 0.450402 | 3.2:-79618609 | None:intergenic |
GGCTATGGTGGCAGAGGGCG+TGG | 0.451114 | 3.2:+79623473 | MS.gene06462:CDS |
GCTGGTGTGGTAGGACCATA+TGG | 0.452033 | 3.2:+79616920 | MS.gene06462:CDS |
ATCAAGATACCTCTCTCAAC+TGG | 0.453887 | 3.2:-79616997 | None:intergenic |
GCGTGGCCGTGGAAGGGGCA+GGG | 0.454451 | 3.2:+79623050 | MS.gene06462:CDS |
TTTCTGTCCACGGCTCCATA+TGG | 0.456788 | 3.2:-79616935 | None:intergenic |
AAACTAATAGCCGGCTGAGC+AGG | 0.458460 | 3.2:-79618626 | None:intergenic |
GTCTAGATCAAAATCTGGTT+CGG | 0.461080 | 3.2:-79618888 | None:intergenic |
TCGCCAAGGATGCGAGGAAG+GGG | 0.461675 | 3.2:+79623027 | MS.gene06462:CDS |
TATGATGGTGGACGTGGCTA+TGG | 0.467843 | 3.2:+79623458 | MS.gene06462:CDS |
TTCAATAGCAAACACTTGCT+GGG | 0.469281 | 3.2:-79618755 | None:intergenic |
GGACGTGGCTATGGTGGCAG+AGG | 0.470972 | 3.2:+79623467 | MS.gene06462:CDS |
ATTAATCCAGGATTACCAAT+AGG | 0.471256 | 3.2:-79618650 | None:intergenic |
CTTACCGCGTGGGGCAGGTG+GGG | 0.471319 | 3.2:-79623582 | None:intergenic |
TCAAGACGATCTAAAGGAGT+TGG | 0.473620 | 3.2:+79615921 | MS.gene06462:CDS |
AGCATTGCTTATGCAGAAGC+TGG | 0.475098 | 3.2:+79618481 | MS.gene06462:CDS |
CTCGCCAAGGATGCGAGGAA+GGG | 0.475876 | 3.2:+79623026 | MS.gene06462:CDS |
TCCTACCACACCAGCAGCTC+CGG | 0.476293 | 3.2:-79616912 | None:intergenic |
CATAAGCAATGCTCTTGATT+GGG | 0.481044 | 3.2:-79618471 | None:intergenic |
AGCCTTGGCATGCTCTATAT+GGG | 0.485503 | 3.2:-79617437 | None:intergenic |
AAGAAGAGTGTTCTAAATAT+GGG | 0.487396 | 3.2:+79618927 | MS.gene06462:CDS |
TGGGTTGGCTCCTGCTCAGC+CGG | 0.490277 | 3.2:+79618616 | MS.gene06462:CDS |
CCTTGCAATGTCCAGTCTCC+AGG | 0.490770 | 3.2:-79617306 | None:intergenic |
CCTGGAGACTGGACATTGCA+AGG | 0.494067 | 3.2:+79617306 | MS.gene06462:CDS |
CCAGAGAGGGCAATTGCCAT+TGG | 0.495102 | 3.2:-79616812 | None:intergenic |
TGTGTATTTGATGTTTGAAA+CGG | 0.496577 | 3.2:+79619072 | MS.gene06462:CDS |
TCTTCTAGGACAACCTGTAA+TGG | 0.497742 | 3.2:+79616841 | MS.gene06462:CDS |
TACTTTGTCAAAGAAAGAGC+TGG | 0.498781 | 3.2:+79622240 | MS.gene06462:CDS |
TGTCATAATACCCAACCGGC+TGG | 0.498971 | 3.2:-79623544 | None:intergenic |
GAGAGATGTTCGTCTGATCA+TGG | 0.499359 | 3.2:+79615890 | MS.gene06462:CDS |
TTCTTTGTAGGAATGTACAA+TGG | 0.504434 | 3.2:+79623413 | MS.gene06462:intron |
CGGGGACGAGGACGTGGCTA+TGG | 0.506197 | 3.2:+79623518 | MS.gene06462:CDS |
CCAGGTGCAGGTATTAATCC+AGG | 0.506314 | 3.2:-79618677 | None:intergenic |
CTCTACCCCTGCCCCTTCCA+CGG | 0.508387 | 3.2:-79623056 | None:intergenic |
AATCCAGGATGTATTAATCC+AGG | 0.508415 | 3.2:-79618662 | None:intergenic |
CAATGAAAACATACGGAAGA+AGG | 0.509927 | 3.2:-79622105 | None:intergenic |
TGATGATGATGAAGGTGGAT+TGG | 0.511614 | 3.2:+79617663 | MS.gene06462:CDS |
CAAGACGATCTAAAGGAGTT+GGG | 0.512572 | 3.2:+79615922 | MS.gene06462:CDS |
GGCCAGCAAATTAACCTGAT+AGG | 0.512692 | 3.2:-79615316 | None:intergenic |
ATGCAGAAGCTGGATCGCTC+TGG | 0.513419 | 3.2:+79618491 | MS.gene06462:CDS |
ATTTAAACTCTGGGCAGCCT+TGG | 0.515586 | 3.2:-79617452 | None:intergenic |
TGGGTAGGCATAATTTGAGT+TGG | 0.515917 | 3.2:-79618710 | None:intergenic |
GCCCTTAAAGGCTACAGAAA+GGG | 0.516293 | 3.2:+79615434 | MS.gene06462:CDS |
GCTTTCCGGGGACGAGGACG+TGG | 0.517005 | 3.2:+79623512 | MS.gene06462:CDS |
GAAATCGTTCTCAAAGCAAT+GGG | 0.517050 | 3.2:+79621866 | MS.gene06462:CDS |
TTTACTTGATCAGCCGGAAG+AGG | 0.519336 | 3.2:-79622875 | None:intergenic |
CGTGGACAGAAAACTGTATG+TGG | 0.520432 | 3.2:+79616946 | MS.gene06462:CDS |
TTAATCCTGACCTCGGTGGT+TGG | 0.520505 | 3.2:-79618791 | None:intergenic |
TAGTAGTATTAGATTGAACT+AGG | 0.523105 | 3.2:-79616889 | None:intergenic |
CCATTGTCATAATACCCAAC+CGG | 0.524799 | 3.2:-79623548 | None:intergenic |
GGTCGTGCTTTCCGGGGACG+AGG | 0.525875 | 3.2:+79623506 | MS.gene06462:CDS |
GAATATGGTGATGGTTATGA+TGG | 0.530946 | 3.2:+79623443 | MS.gene06462:CDS |
TGAGCCATTTGGTACTGTAG+AGG | 0.531116 | 3.2:+79617264 | MS.gene06462:CDS |
CATAGCCACGTCCTCGTCCC+CGG | 0.531366 | 3.2:-79623517 | None:intergenic |
TTTGTATACAGAAATAGTGC+AGG | 0.531655 | 3.2:+79619046 | MS.gene06462:intron |
TGGTTTACCCATGAATGGGT+TGG | 0.532788 | 3.2:+79618601 | MS.gene06462:CDS |
TAGAAGAAGTTGGCCAGAGA+GGG | 0.535398 | 3.2:-79616825 | None:intergenic |
AATTGCTGGCAGAACTATCA+AGG | 0.535697 | 3.2:+79617486 | MS.gene06462:CDS |
CAGGTTGTCCTAGAAGAAGT+TGG | 0.538721 | 3.2:-79616835 | None:intergenic |
AATCCTGGATTAATACATCC+TGG | 0.538804 | 3.2:+79618659 | MS.gene06462:CDS |
ACGTGGCTATGGTGCCCAGC+CGG | 0.540009 | 3.2:+79623529 | MS.gene06462:CDS |
AGAGGGCGTGGCCGTGCATG+GGG | 0.540930 | 3.2:+79623485 | MS.gene06462:CDS |
GCATTGGTTTACCCATGAAT+GGG | 0.543521 | 3.2:+79618597 | MS.gene06462:intron |
AGGAACTCAAGACGATCTAA+AGG | 0.546738 | 3.2:+79615915 | MS.gene06462:CDS |
GAGCTGGATACATCCTCCAC+AGG | 0.550506 | 3.2:+79622256 | MS.gene06462:CDS |
AGAAATCGTTCTCAAAGCAA+TGG | 0.552556 | 3.2:+79621865 | MS.gene06462:CDS |
AGCCTGAGGCAGATCCAGAA+AGG | 0.553950 | 3.2:+79615274 | MS.gene06462:CDS |
GGTAGAGCTAGTCCAGGTGC+AGG | 0.554274 | 3.2:-79618689 | None:intergenic |
TCCGACAGGTTCGGCCACTT+GGG | 0.555085 | 3.2:-79618729 | None:intergenic |
GCCTGAGGCAGATCCAGAAA+GGG | 0.557148 | 3.2:+79615275 | MS.gene06462:CDS |
ACAGGTTCGGCCACTTGGGT+AGG | 0.558658 | 3.2:-79618725 | None:intergenic |
GTCATAATACCCAACCGGCT+GGG | 0.558897 | 3.2:-79623543 | None:intergenic |
AATACTACTACCGGAGCTGC+TGG | 0.559154 | 3.2:+79616902 | MS.gene06462:CDS |
GGAAAGCACGACCCCATGCA+CGG | 0.559235 | 3.2:-79623496 | None:intergenic |
CTCAGCGTGCAATGCACATG+AGG | 0.559984 | 3.2:+79619113 | MS.gene06462:CDS |
GTTCAATCTAATACTACTAC+CGG | 0.564360 | 3.2:+79616893 | MS.gene06462:CDS |
CAACTGATATAACTGACACA+TGG | 0.565866 | 3.2:+79622065 | MS.gene06462:CDS |
TGCCCTTAAAGGCTACAGAA+AGG | 0.565916 | 3.2:+79615433 | MS.gene06462:CDS |
GACGTGGCTATGGTGGCAGA+GGG | 0.566506 | 3.2:+79623468 | MS.gene06462:CDS |
ATTCTTCTCAAAAGCTGGCA+AGG | 0.568033 | 3.2:+79615467 | MS.gene06462:CDS |
CCTGGATTAATACCTGCACC+TGG | 0.569224 | 3.2:+79618677 | MS.gene06462:CDS |
TGATGCAATGTCGGTGCCAA+TGG | 0.571085 | 3.2:+79616796 | MS.gene06462:CDS |
GAAAGAAACGGTCGAGCCTG+AGG | 0.571800 | 3.2:+79615260 | MS.gene06462:CDS |
TCTCAGTCATATTGAAGTGA+AGG | 0.572231 | 3.2:-79616973 | None:intergenic |
TGTGCAACTTCCACTTGACC+TGG | 0.573920 | 3.2:+79617288 | MS.gene06462:CDS |
TGTCCAGTCTCCAGGTCAAG+TGG | 0.578083 | 3.2:-79617298 | None:intergenic |
ACATGGGAACCACTTGAAGA+AGG | 0.580775 | 3.2:+79622082 | MS.gene06462:CDS |
ACAACCTCTACAGTACCAAA+TGG | 0.582148 | 3.2:-79617268 | None:intergenic |
CCAATAGGCAAACTAATAGC+CGG | 0.582701 | 3.2:-79618635 | None:intergenic |
GGAAGAAGGCCTTCTTCAAG+TGG | 0.583553 | 3.2:-79622091 | None:intergenic |
TGAGTTGGTAGAGCTAGTCC+AGG | 0.585279 | 3.2:-79618695 | None:intergenic |
TGTAATGGTAAAACCTTCTG+AGG | 0.586376 | 3.2:+79616856 | MS.gene06462:CDS |
ACCTTTAAATGAATATGAAG+AGG | 0.587328 | 3.2:+79622898 | MS.gene06462:CDS |
GATGGTTATGATGGTGGACG+TGG | 0.587716 | 3.2:+79623452 | MS.gene06462:CDS |
CGCCAAGGATGCGAGGAAGG+GGG | 0.588165 | 3.2:+79623028 | MS.gene06462:CDS |
TTAAATGAATATGAAGAGGA+AGG | 0.589261 | 3.2:+79622902 | MS.gene06462:CDS |
GTATTTGATGTTTGAAACGG+TGG | 0.589307 | 3.2:+79619075 | MS.gene06462:CDS |
GCAGGAGCCAACCCATTCAT+GGG | 0.590294 | 3.2:-79618608 | None:intergenic |
ACTTGATCAGCCGGAAGAGG+AGG | 0.591207 | 3.2:-79622872 | None:intergenic |
TATGGTGATGGTTATGATGG+TGG | 0.591644 | 3.2:+79623446 | MS.gene06462:CDS |
TCAAATTATGCCTACCCAAG+TGG | 0.593026 | 3.2:+79618715 | MS.gene06462:CDS |
GATGGTGGACGTGGCTATGG+TGG | 0.594069 | 3.2:+79623461 | MS.gene06462:CDS |
TACTACCGGAGCTGCTGGTG+TGG | 0.594160 | 3.2:+79616907 | MS.gene06462:CDS |
TCAATAGCAAACACTTGCTG+GGG | 0.595059 | 3.2:-79618754 | None:intergenic |
AACTGATATAACTGACACAT+GGG | 0.600887 | 3.2:+79622066 | MS.gene06462:CDS |
CTGGAGACTGGACATTGCAA+GGG | 0.601660 | 3.2:+79617307 | MS.gene06462:CDS |
ACCCAAGTGGCCGAACCTGT+CGG | 0.602654 | 3.2:+79618728 | MS.gene06462:CDS |
TCTCGCATGCTTACCGCGTG+GGG | 0.605999 | 3.2:-79623591 | None:intergenic |
CTAGAAGAAGTTGGCCAGAG+AGG | 0.613365 | 3.2:-79616826 | None:intergenic |
ATGTTCGTCTGATCATGGAT+AGG | 0.614989 | 3.2:+79615895 | MS.gene06462:CDS |
GTGGACAGAAAACTGTATGT+GGG | 0.617778 | 3.2:+79616947 | MS.gene06462:CDS |
AGAGTGTTCTAAATATGGGC+GGG | 0.618240 | 3.2:+79618931 | MS.gene06462:CDS |
CCGGTTGGGTATTATGACAA+TGG | 0.619666 | 3.2:+79623548 | MS.gene06462:CDS |
GACTGAGAGCCAGTTGAGAG+AGG | 0.620167 | 3.2:+79616988 | MS.gene06462:CDS |
AATGAATATGAAGAGGAAGG+AGG | 0.621567 | 3.2:+79622905 | MS.gene06462:CDS |
GCATGGGGTCGTGCTTTCCG+GGG | 0.624471 | 3.2:+79623500 | MS.gene06462:CDS |
ACCGGAGCTGCTGGTGTGGT+AGG | 0.626244 | 3.2:+79616911 | MS.gene06462:CDS |
GATACACAGAAGGCTCGCCA+AGG | 0.633168 | 3.2:+79623013 | MS.gene06462:intron |
ATTTAGGGAGAAGAAAGAAA+CGG | 0.635597 | 3.2:+79615248 | MS.gene06462:CDS |
AGCGTGCAATGCACATGAGG+TGG | 0.635701 | 3.2:+79619116 | MS.gene06462:CDS |
ATTTCGAAATGAGAGATAGC+CGG | 0.635859 | 3.2:+79612987 | None:intergenic |
AATGATTTCAGCTATATACA+TGG | 0.636464 | 3.2:+79619150 | MS.gene06462:CDS |
GAAGGCTCGCCAAGGATGCG+AGG | 0.639147 | 3.2:+79623021 | MS.gene06462:intron |
ATCGCTCTGGAATTACTGCA+AGG | 0.641131 | 3.2:+79618504 | MS.gene06462:CDS |
GCTCTCGCATGCTTACCGCG+TGG | 0.644925 | 3.2:-79623593 | None:intergenic |
AAGAGTGTTCTAAATATGGG+CGG | 0.647146 | 3.2:+79618930 | MS.gene06462:CDS |
TGAAAGTTCATACCCTGTGG+AGG | 0.649730 | 3.2:-79622269 | None:intergenic |
CAATAGCAAACACTTGCTGG+GGG | 0.650254 | 3.2:-79618753 | None:intergenic |
TGCCCATATAGAGCATGCCA+AGG | 0.652899 | 3.2:+79617435 | MS.gene06462:CDS |
TTTGTAGGAATGTACAATGG+GGG | 0.656698 | 3.2:+79623416 | MS.gene06462:intron |
AGCTGGATACATCCTCCACA+GGG | 0.668533 | 3.2:+79622257 | MS.gene06462:CDS |
TGGACAGAAAACTGTATGTG+GGG | 0.675066 | 3.2:+79616948 | MS.gene06462:CDS |
GGTAGGACCATATGGAGCCG+TGG | 0.677350 | 3.2:+79616928 | MS.gene06462:CDS |
CCAGTTAATCCTGACCTCGG+TGG | 0.685653 | 3.2:-79618795 | None:intergenic |
CTTTGTAGGAATGTACAATG+GGG | 0.692917 | 3.2:+79623415 | MS.gene06462:intron |
GATGCCCCACCTGCCCCACG+CGG | 0.736589 | 3.2:+79623578 | MS.gene06462:CDS |
TATGTTTGATCCAACCACCG+AGG | 0.793692 | 3.2:+79618781 | MS.gene06462:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.2 | gene | 79612995 | 79623625 | 79612995 | ID=MS.gene06462 |
chr3.2 | mRNA | 79612995 | 79623625 | 79612995 | ID=MS.gene06462.t1;Parent=MS.gene06462 |
chr3.2 | exon | 79612995 | 79613008 | 79612995 | ID=MS.gene06462.t1.exon1;Parent=MS.gene06462.t1 |
chr3.2 | CDS | 79612995 | 79613008 | 79612995 | ID=cds.MS.gene06462.t1;Parent=MS.gene06462.t1 |
chr3.2 | exon | 79615245 | 79615323 | 79615245 | ID=MS.gene06462.t1.exon2;Parent=MS.gene06462.t1 |
chr3.2 | CDS | 79615245 | 79615323 | 79615245 | ID=cds.MS.gene06462.t1;Parent=MS.gene06462.t1 |
chr3.2 | exon | 79615432 | 79615488 | 79615432 | ID=MS.gene06462.t1.exon3;Parent=MS.gene06462.t1 |
chr3.2 | CDS | 79615432 | 79615488 | 79615432 | ID=cds.MS.gene06462.t1;Parent=MS.gene06462.t1 |
chr3.2 | exon | 79615888 | 79615943 | 79615888 | ID=MS.gene06462.t1.exon4;Parent=MS.gene06462.t1 |
chr3.2 | CDS | 79615888 | 79615943 | 79615888 | ID=cds.MS.gene06462.t1;Parent=MS.gene06462.t1 |
chr3.2 | exon | 79616781 | 79617009 | 79616781 | ID=MS.gene06462.t1.exon5;Parent=MS.gene06462.t1 |
chr3.2 | CDS | 79616781 | 79617009 | 79616781 | ID=cds.MS.gene06462.t1;Parent=MS.gene06462.t1 |
chr3.2 | exon | 79617259 | 79617345 | 79617259 | ID=MS.gene06462.t1.exon6;Parent=MS.gene06462.t1 |
chr3.2 | CDS | 79617259 | 79617345 | 79617259 | ID=cds.MS.gene06462.t1;Parent=MS.gene06462.t1 |
chr3.2 | exon | 79617433 | 79617507 | 79617433 | ID=MS.gene06462.t1.exon7;Parent=MS.gene06462.t1 |
chr3.2 | CDS | 79617433 | 79617507 | 79617433 | ID=cds.MS.gene06462.t1;Parent=MS.gene06462.t1 |
chr3.2 | exon | 79617604 | 79617684 | 79617604 | ID=MS.gene06462.t1.exon8;Parent=MS.gene06462.t1 |
chr3.2 | CDS | 79617604 | 79617684 | 79617604 | ID=cds.MS.gene06462.t1;Parent=MS.gene06462.t1 |
chr3.2 | exon | 79618461 | 79618525 | 79618461 | ID=MS.gene06462.t1.exon9;Parent=MS.gene06462.t1 |
chr3.2 | CDS | 79618461 | 79618525 | 79618461 | ID=cds.MS.gene06462.t1;Parent=MS.gene06462.t1 |
chr3.2 | exon | 79618598 | 79618802 | 79618598 | ID=MS.gene06462.t1.exon10;Parent=MS.gene06462.t1 |
chr3.2 | CDS | 79618598 | 79618802 | 79618598 | ID=cds.MS.gene06462.t1;Parent=MS.gene06462.t1 |
chr3.2 | exon | 79618887 | 79618975 | 79618887 | ID=MS.gene06462.t1.exon11;Parent=MS.gene06462.t1 |
chr3.2 | CDS | 79618887 | 79618975 | 79618887 | ID=cds.MS.gene06462.t1;Parent=MS.gene06462.t1 |
chr3.2 | exon | 79619057 | 79619171 | 79619057 | ID=MS.gene06462.t1.exon12;Parent=MS.gene06462.t1 |
chr3.2 | CDS | 79619057 | 79619171 | 79619057 | ID=cds.MS.gene06462.t1;Parent=MS.gene06462.t1 |
chr3.2 | exon | 79621851 | 79621931 | 79621851 | ID=MS.gene06462.t1.exon13;Parent=MS.gene06462.t1 |
chr3.2 | CDS | 79621851 | 79621931 | 79621851 | ID=cds.MS.gene06462.t1;Parent=MS.gene06462.t1 |
chr3.2 | exon | 79622025 | 79622113 | 79622025 | ID=MS.gene06462.t1.exon14;Parent=MS.gene06462.t1 |
chr3.2 | CDS | 79622025 | 79622113 | 79622025 | ID=cds.MS.gene06462.t1;Parent=MS.gene06462.t1 |
chr3.2 | exon | 79622204 | 79622278 | 79622204 | ID=MS.gene06462.t1.exon15;Parent=MS.gene06462.t1 |
chr3.2 | CDS | 79622204 | 79622278 | 79622204 | ID=cds.MS.gene06462.t1;Parent=MS.gene06462.t1 |
chr3.2 | exon | 79622865 | 79622926 | 79622865 | ID=MS.gene06462.t1.exon16;Parent=MS.gene06462.t1 |
chr3.2 | CDS | 79622865 | 79622926 | 79622865 | ID=cds.MS.gene06462.t1;Parent=MS.gene06462.t1 |
chr3.2 | exon | 79623022 | 79623084 | 79623022 | ID=MS.gene06462.t1.exon17;Parent=MS.gene06462.t1 |
chr3.2 | CDS | 79623022 | 79623084 | 79623022 | ID=cds.MS.gene06462.t1;Parent=MS.gene06462.t1 |
chr3.2 | exon | 79623423 | 79623625 | 79623423 | ID=MS.gene06462.t1.exon18;Parent=MS.gene06462.t1 |
chr3.2 | CDS | 79623423 | 79623625 | 79623423 | ID=cds.MS.gene06462.t1;Parent=MS.gene06462.t1 |
Gene Sequence |
Protein sequence |