AlfalfaGEDB | MS.gene008393

M. sativa cultivar XinJiangDaYe / MS.gene008393

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF01535.23 PF12854.10 PF13041.9 PF20431.1

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene008393.t1	XP_013460524.1	91.9	553	38	1	1	553	1	546	2.20E-295	1024.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene008393.t1	Q9SB36	62.6	481	179	1	73	552	46	526	1.1e-178	627.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene008393.t1	A0A072UZJ9	91.9	553	38	1	1	553	1	546	1.6e-295	1024.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene008393	MS.gene22540	PPI
MS.gene013365	MS.gene008393	PPI
MS.gene025153	MS.gene008393	PPI
MS.gene025155	MS.gene008393	PPI
MS.gene030681	MS.gene008393	PPI
MS.gene035805	MS.gene008393	PPI
MS.gene049343	MS.gene008393	PPI
MS.gene051225	MS.gene008393	PPI
MS.gene064542	MS.gene008393	PPI
MS.gene06462	MS.gene008393	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene008393.t1	MTR_3g063220	94.756	553	22	1	1	553	1	546	0.0	1070
MS.gene008393.t1	MTR_2g101710	36.140	487	290	8	74	549	4	480	6.73e-104	325
MS.gene008393.t1	MTR_2g101710	25.074	339	240	9	222	551	48	381	4.75e-26	112
MS.gene008393.t1	MTR_1g059280	36.547	446	270	8	113	549	35	476	4.05e-96	305
MS.gene008393.t1	MTR_1g059280	27.273	297	207	4	210	500	29	322	2.09e-35	140
MS.gene008393.t1	MTR_1g059280	29.073	313	207	6	91	394	116	422	1.45e-34	138
MS.gene008393.t1	MTR_2g036960	38.366	404	237	6	157	551	156	556	3.39e-90	292
MS.gene008393.t1	MTR_2g036960	31.421	366	219	9	202	546	95	449	9.29e-49	180
MS.gene008393.t1	MTR_2g036960	28.402	338	209	6	111	445	212	519	1.07e-38	151
MS.gene008393.t1	MTR_6g032915	33.857	446	286	4	112	551	480	922	8.81e-90	299

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene008393.t1	AT4G25270	61.277	501	188	3	56	552	28	526	0.0	640
MS.gene008393.t1	AT3G46790	35.054	465	280	7	107	552	59	520	2.09e-95	305
MS.gene008393.t1	AT3G46790	27.554	323	215	6	190	500	50	365	3.09e-31	129
MS.gene008393.t1	AT2G13600	34.021	485	273	7	111	551	145	626	1.37e-89	290
MS.gene008393.t1	AT2G13600	25.000	436	254	8	117	479	18	453	3.37e-47	176
MS.gene008393.t1	AT4G18750	36.009	461	281	6	100	551	278	733	3.02e-88	291
MS.gene008393.t1	AT4G18750	31.157	337	223	4	110	439	187	521	7.67e-54	196
MS.gene008393.t1	AT4G18750	31.118	331	220	3	115	439	91	419	4.92e-47	176
MS.gene008393.t1	AT2G22070	33.654	520	267	9	101	548	132	645	1.62e-87	287
MS.gene008393.t1	AT2G22070	26.376	436	232	11	163	519	90	515	6.96e-41	158

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Find 130 sgRNAs with CRISPR-Local

Find 163 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCAATTATGGAGCATTA+TGG	0.291093	3.1:-53168239	MS.gene008393:CDS
AAAGGGCTGGTGGGATAAGA+CGG	0.578784	3.1:+53169164	None:intergenic
AAATTCATGGATGGGTGATC+CGG	0.468560	3.1:-53168568	MS.gene008393:CDS
AACTCAAGAAATTGCGAAAA+TGG	0.182801	3.1:-53169414	MS.gene008393:CDS
AAGCTATTAATCATGGTATC+CGG	0.443044	3.1:-53169192	MS.gene008393:CDS
AATAAAGAAGCATAAATTTC+AGG	0.208208	3.1:+53169235	None:intergenic
AATAAAGCTCCCCACAGAGT+TGG	0.564083	3.1:+53168131	None:intergenic
AATTAGAAGTGGTGTTGGTT+TGG	0.388305	3.1:+53169351	None:intergenic
AATTGGGTTGGTGGGAGTTG+GGG	0.322597	3.1:-53168888	MS.gene008393:CDS
ACAAAATTATGTTCATTGTC+CGG	0.443641	3.1:+53168038	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACTCAAGAAATTGCGAAAA+TGG	-	chr3.1:53168119-53168138	MS.gene008393:CDS	30.0%
AAGCTATTAATCATGGTATC+CGG	-	chr3.1:53168341-53168360	MS.gene008393:CDS	30.0%
ACTCAAGAAATTGCGAAAAT+GGG	-	chr3.1:53168120-53168139	MS.gene008393:CDS	30.0%
ATATCTGGATATGCTGAAAT+GGG	-	chr3.1:53168523-53168542	MS.gene008393:CDS	30.0%
ATCATTCACCAAACCTAAAT+GGG	+	chr3.1:53169232-53169251	None:intergenic	30.0%
ATTCAATTTGATGCCAGAAA+GGG	-	chr3.1:53169074-53169093	MS.gene008393:CDS	30.0%
CATAAATTTCAGGGTCAATT+TGG	+	chr3.1:53168291-53168310	None:intergenic	30.0%
CATTTGAAAATAAAGCGCAA+TGG	+	chr3.1:53168563-53168582	None:intergenic	30.0%
GTTAGATTGTATGCTTCATT+TGG	-	chr3.1:53168424-53168443	MS.gene008393:CDS	30.0%
GTTTGATCAAATGACTAAGA+GGG	-	chr3.1:53168471-53168490	MS.gene008393:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.1	gene	53167947	53169608	53167947	ID=MS.gene008393
chr3.1	mRNA	53167947	53169608	53167947	ID=MS.gene008393.t1;Parent=MS.gene008393
chr3.1	exon	53167947	53169608	53167947	ID=MS.gene008393.t1.exon1;Parent=MS.gene008393.t1
chr3.1	CDS	53167947	53169608	53167947	ID=cds.MS.gene008393.t1;Parent=MS.gene008393.t1

Gene Sequence

>MS.gene008393

ATGGCATCGTCGTCGTGGTACTCTACTCCCCTCACCACCGTAACCACCACTACTCGTTGCTACTCTTTCACCTCTAACAATGACCCTGCTGTAAGTACCAATCTTAGAGAGTGTAGTTCAATTAATATACTGTCACTCGTCTACACAGCCAAGAAGAACACTGACAACAAGAAACTCAAGAAATTGCGAAAATGGGATACCCAAAAATCAAAAAACACTTTTTCATACCCAAAATCCAAACCAACACCACTTCTAATTCACCAACAACCATACCCACAAACCAAATTTCAAGCACTTGAACAAGTTCTCAGTGACCTTGAATCTTCATTAGAAAAAGGTATCCAAATTGACCCTGAAATTTATGCTTCTTTATTAGAAACTTGTTACCGTTTTCAAGCTATTAATCATGGTATCCGGCTTCACCGTCTTATCCCACCAGCCCTTTTGCATAAAAATGTTGGTATAAGTTCGAAACTGGTTAGATTGTATGCTTCATTTGGGTATATGGATGATGCACATGACTTGTTTGATCAAATGACTAAGAGGGATATGTATGCTTTTCCGTGGAATTCGTTGATATCTGGATATGCTGAAATGGGTCTTTATCATGATGCCATTGCGCTTTATTTTCAAATGGTGGAAGAGGGTGTTGAACCAGATGTTTTCACGTTTCCTCGGGTTCTTAAAGTTTGTGGTGGAATTGGGTTGGTGGGAGTTGGGGAAGAGGTGCATCGTCATGTGGTGCGTTGTGGGTTTTGGGATGATGGGTTTGTGCTTAATGCACTTGTTGATATGTATTCTAAATGTGGTGACATTGTGAAGGCGAGGAAGATTTTTAATAAAATGCCTTTTAGAGACTCGGTTTCGTGGAACTCGATGCTCACGGGTTACGTTCGTCATGGTCTTGAGGTTGAGGCAATCAATATTTTTCGGCAAATGGTTTTGAAAGGGGAAAAACCTGACTATTTTTCTATATCCGCGATTCTTACTAGTGTGTCGTCATTATATGTTGGGGTCCAAATTCATGGATGGGTGATCCGGCAAGGTGTTGAGTGGAACTTGTCTATTGCTAATTCCTTGATCGTTGTGTACTCCAAGCATGGAAGATTGGATAAGGCACGTTCAATATTCAATTTGATGCCAGAAAGGGATGTTGTTTCGTGGAATTCCATAATATCTGCTCATTGTAAACACCCGGAAGCTATCACTTATTTTGAGAAAATGGAGGAAGCTGGTGAATTGCCTGATAAAATAACATTTGTTTCATTGTTATCAGCTTGTGCCCATTTAGGTTTGGTGAATGATGGAGAGAGACTGTTTGCCTTGATGTGTGAAAAGTATAAAATAAAACCAATTATGGAGCATTATGGTTGTATGGTTAACCTATATGGTAGAGCAGGATTGGTCGAAAAGGCTTATAGCATCATAGTTAGAATGGACTCTGAGGCGGTTGGTCCAACTCTGTGGGGAGCTTTATTATATGCATGCTTTTTGCATGGAAATGTAACTATAGGGGAGATTTCTGCAAACAAGCTTTTTGAATTAGAGCCGGACAATGAACATAATTTTGTACTTCTTATGAAGATCTACGAAAAGGCAGGTAGATTAGAGGATATGGAGAGAATTAGAATGATGATGGTTGATAGAGGGTTGGATCACTAG

Protein sequence

>MS.gene008393.t1

MASSSWYSTPLTTVTTTTRCYSFTSNNDPAVSTNLRECSSINILSLVYTAKKNTDNKKLKKLRKWDTQKSKNTFSYPKSKPTPLLIHQQPYPQTKFQALEQVLSDLESSLEKGIQIDPEIYASLLETCYRFQAINHGIRLHRLIPPALLHKNVGISSKLVRLYASFGYMDDAHDLFDQMTKRDMYAFPWNSLISGYAEMGLYHDAIALYFQMVEEGVEPDVFTFPRVLKVCGGIGLVGVGEEVHRHVVRCGFWDDGFVLNALVDMYSKCGDIVKARKIFNKMPFRDSVSWNSMLTGYVRHGLEVEAINIFRQMVLKGEKPDYFSISAILTSVSSLYVGVQIHGWVIRQGVEWNLSIANSLIVVYSKHGRLDKARSIFNLMPERDVVSWNSIISAHCKHPEAITYFEKMEEAGELPDKITFVSLLSACAHLGLVNDGERLFALMCEKYKIKPIMEHYGCMVNLYGRAGLVEKAYSIIVRMDSEAVGPTLWGALLYACFLHGNVTIGEISANKLFELEPDNEHNFVLLMKIYEKAGRLEDMERIRMMMVDRGLDH