Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064656.t1 | RHN70991.1 | 99.1 | 340 | 3 | 0 | 1 | 340 | 1 | 340 | 4.80E-192 | 680.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064656.t1 | A0A072V444 | 99.1 | 340 | 3 | 0 | 1 | 340 | 1 | 340 | 3.4e-192 | 680.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051209 | MS.gene064656 | 0.819526 | 1.11E-52 | -1.69E-46 |
| MS.gene057174 | MS.gene064656 | 0.853694 | 2.02E-61 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064656.t1 | MTR_3g111730 | 99.118 | 340 | 3 | 0 | 1 | 340 | 1 | 340 | 0.0 | 683 |
| MS.gene064656.t1 | MTR_3g111730 | 99.118 | 340 | 3 | 0 | 1 | 340 | 1 | 340 | 0.0 | 683 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064656.t1 | AT1G45150 | 69.412 | 340 | 95 | 4 | 1 | 340 | 1 | 331 | 1.42e-167 | 481 |
Find 98 sgRNAs with CRISPR-Local
Find 210 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTGAATTCTCTTCAGAAAA+TGG | 0.112485 | 3.4:-96849702 | MS.gene064656:CDS |
| CCTTCCCTTCCTGCTGTATT+TGG | 0.166148 | 3.4:-96849585 | MS.gene064656:CDS |
| GCAGGAAGGGAAGGAGTTTC+GGG | 0.269202 | 3.4:+96849594 | None:intergenic |
| CGCGTCAGGTACACCTAAAA+TGG | 0.271076 | 3.4:+96850338 | None:intergenic |
| TGGGGTAGTTCTAGTGTTGC+TGG | 0.285103 | 3.4:-96850530 | MS.gene064656:CDS |
| AGCAGGAAGGGAAGGAGTTT+CGG | 0.295699 | 3.4:+96849593 | None:intergenic |
| TTAGGGAGACTACCGCTCTT+TGG | 0.317886 | 3.4:-96850165 | MS.gene064656:intron |
| CAGATGTGTACCCTGGAAAT+AGG | 0.341718 | 3.4:+96850280 | None:intergenic |
| CTGAATTCTCTTCAGAAAAT+GGG | 0.355634 | 3.4:-96849701 | MS.gene064656:CDS |
| GGGATTTCTGTAGGGTCAAT+TGG | 0.359714 | 3.4:+96851129 | None:intergenic |
| GGTCAAATAAACCTATTTCC+AGG | 0.363423 | 3.4:-96850291 | MS.gene064656:CDS |
| AAACCTACCACTTCATCTAA+TGG | 0.367775 | 3.4:+96849870 | None:intergenic |
| GAACTACCCCATGAAACTTT+TGG | 0.377411 | 3.4:+96850542 | None:intergenic |
| TGAGAAACGTCAATTGTATA+AGG | 0.383710 | 3.4:-96849937 | MS.gene064656:CDS |
| TAGGGTCAATTGGTCCTTTG+AGG | 0.388877 | 3.4:+96851139 | None:intergenic |
| AATAGGTTTATTTGACCAAC+TGG | 0.389218 | 3.4:+96850297 | None:intergenic |
| CCACCAGTTGAAGGTGTTGC+TGG | 0.406626 | 3.4:-96851213 | MS.gene064656:CDS |
| TGAAGTTAAATCTCACTGTC+TGG | 0.412809 | 3.4:-96849629 | MS.gene064656:CDS |
| TCAAGAAATGCCTAGACATT+TGG | 0.417535 | 3.4:-96851052 | MS.gene064656:CDS |
| CATTGGATCAACATTTCAAA+TGG | 0.417676 | 3.4:-96849006 | MS.gene064656:CDS |
| TCAATTGTATAAGGAGCTTA+AGG | 0.426284 | 3.4:-96849928 | MS.gene064656:CDS |
| CTAGGGATTTAGTGCATGTA+TGG | 0.445441 | 3.4:-96851104 | MS.gene064656:CDS |
| CGACAAAAGAATCCTTCTTA+AGG | 0.459593 | 3.4:+96849734 | None:intergenic |
| GTTCCTCTTGATCTTCCAGT+TGG | 0.459853 | 3.4:-96850312 | MS.gene064656:CDS |
| CTATTCGACCAAAAGTTTCA+TGG | 0.460643 | 3.4:-96850550 | MS.gene064656:CDS |
| TCAAGAGGAACAAGCGCGTC+AGG | 0.462657 | 3.4:+96850324 | None:intergenic |
| GCTCCAATGTTCGCTGTGCT+TGG | 0.466059 | 3.4:+96851075 | None:intergenic |
| ACATGCACTAAATCCCTAGT+TGG | 0.466145 | 3.4:+96851108 | None:intergenic |
| CCACCAGCAACACCTTCAAC+TGG | 0.468879 | 3.4:+96851210 | None:intergenic |
| AGCTGAGTGGTATGAGGCAT+TGG | 0.471969 | 3.4:-96849023 | MS.gene064656:CDS |
| AGCGACCTATCCTCTTCTTC+AGG | 0.476357 | 3.4:-96850488 | MS.gene064656:CDS |
| GTCTCTACTGTTGCGGCGGG+TGG | 0.476879 | 3.4:-96850364 | MS.gene064656:CDS |
| TCCCTAGTTGGGATTTCTGT+AGG | 0.480218 | 3.4:+96851120 | None:intergenic |
| AAATGGGTCAGCAGATGTAA+TGG | 0.481294 | 3.4:-96849685 | MS.gene064656:CDS |
| TATTCGACCAAAAGTTTCAT+GGG | 0.481440 | 3.4:-96850549 | MS.gene064656:CDS |
| ATTTCTCCTTCATATTGTCC+TGG | 0.481516 | 3.4:+96850112 | None:intergenic |
| TAGTGTTGCTGGGACTGTGC+AGG | 0.485139 | 3.4:-96850519 | MS.gene064656:CDS |
| TCGTAGAGAGAGATTTGAAA+TGG | 0.495995 | 3.4:+96849653 | None:intergenic |
| TGTCCTGGAGGTTGATCACT+TGG | 0.496626 | 3.4:+96850127 | None:intergenic |
| GCTGGTGGCGGTACATCATA+CGG | 0.498268 | 3.4:-96851195 | MS.gene064656:CDS |
| TATCCTCTTCTTCAGGAGAC+AGG | 0.507224 | 3.4:-96850481 | MS.gene064656:intron |
| GGGGTAGTTCTAGTGTTGCT+GGG | 0.511329 | 3.4:-96850529 | MS.gene064656:CDS |
| ACTGTGATTGAGGATCGCTT+TGG | 0.511491 | 3.4:-96849061 | MS.gene064656:CDS |
| CATGCACTAAATCCCTAGTT+GGG | 0.512987 | 3.4:+96851109 | None:intergenic |
| ACATCATACGGGTGGAATGA+TGG | 0.518311 | 3.4:-96851183 | MS.gene064656:CDS |
| GTTCCAAGTGATCAACCTCC+AGG | 0.520566 | 3.4:-96850130 | MS.gene064656:CDS |
| TTCTGTTCAAAGTTCAAGCA+AGG | 0.520691 | 3.4:-96849961 | MS.gene064656:CDS |
| GATATCCGATACTGTGATTG+AGG | 0.521245 | 3.4:-96849071 | MS.gene064656:CDS |
| TATGTTGTAGATAAATCTGC+TGG | 0.530003 | 3.4:-96850606 | MS.gene064656:intron |
| GCGTCAGGTACACCTAAAAT+GGG | 0.532209 | 3.4:+96850339 | None:intergenic |
| CTAACAGGCTCCAAATGTCT+AGG | 0.533324 | 3.4:+96851042 | None:intergenic |
| CTACAACTATGTCCTTAAGA+AGG | 0.535123 | 3.4:-96849746 | MS.gene064656:CDS |
| GAAGAGAATTCAGAAAATGA+TGG | 0.535269 | 3.4:+96849711 | None:intergenic |
| GACATTGTTGATCCAATCGA+TGG | 0.535319 | 3.4:-96849897 | MS.gene064656:CDS |
| GTCAAATAAACCTATTTCCA+GGG | 0.536797 | 3.4:-96850290 | MS.gene064656:intron |
| ATGTTGGCAGACTGATTGTT+GGG | 0.542763 | 3.4:-96850389 | MS.gene064656:intron |
| CCCTAGTTGGGATTTCTGTA+GGG | 0.544376 | 3.4:+96851121 | None:intergenic |
| TTGGGAAGTCTCTACTGTTG+CGG | 0.550401 | 3.4:-96850371 | MS.gene064656:CDS |
| TGGGACAGCTGAGTGGTATG+AGG | 0.550457 | 3.4:-96849029 | MS.gene064656:CDS |
| GAAGTTAAATCTCACTGTCT+GGG | 0.552734 | 3.4:-96849628 | MS.gene064656:CDS |
| CAACCTGTCTCCTGAAGAAG+AGG | 0.552787 | 3.4:+96850478 | None:intergenic |
| GGCACAACCACTTCTTGTGG+TGG | 0.556455 | 3.4:+96851234 | None:intergenic |
| GAAGTCTCTACTGTTGCGGC+GGG | 0.558017 | 3.4:-96850367 | MS.gene064656:CDS |
| GATCGCTTTGGAGTTAAACA+TGG | 0.558059 | 3.4:-96849049 | MS.gene064656:CDS |
| TGGAAAACCATTAGATGAAG+TGG | 0.559998 | 3.4:-96849877 | MS.gene064656:intron |
| TCTCCTTCATATTGTCCTGG+AGG | 0.562962 | 3.4:+96850115 | None:intergenic |
| GCGATCCTCAATCACAGTAT+CGG | 0.563351 | 3.4:+96849066 | None:intergenic |
| GTGGTTGTGCCACCAGTTGA+AGG | 0.565449 | 3.4:-96851222 | MS.gene064656:CDS |
| GTCAGCAGATGTAATGGAAG+AGG | 0.566488 | 3.4:-96849679 | MS.gene064656:CDS |
| GGAAGTCTCTACTGTTGCGG+CGG | 0.574485 | 3.4:-96850368 | MS.gene064656:CDS |
| CAACCTCCAGGACAATATGA+AGG | 0.575669 | 3.4:-96850118 | MS.gene064656:CDS |
| AATGTTGGCAGACTGATTGT+TGG | 0.577112 | 3.4:-96850390 | MS.gene064656:intron |
| AAGGATACGCCAAATACAGC+AGG | 0.579227 | 3.4:+96849576 | None:intergenic |
| TGACCAACTGGAAGATCAAG+AGG | 0.583257 | 3.4:+96850309 | None:intergenic |
| AGGAAATCCACCACAAGAAG+TGG | 0.584123 | 3.4:-96851241 | MS.gene064656:CDS |
| GTTGAAGGTGTTGCTGGTGG+CGG | 0.589895 | 3.4:-96851207 | MS.gene064656:CDS |
| CCAAATACAGCAGGAAGGGA+AGG | 0.592766 | 3.4:+96849585 | None:intergenic |
| ATGCCAAGCACAGCGAACAT+TGG | 0.599131 | 3.4:-96851078 | MS.gene064656:CDS |
| TACGCCAAATACAGCAGGAA+GGG | 0.601322 | 3.4:+96849581 | None:intergenic |
| CTGGTGGCGGTACATCATAC+GGG | 0.601630 | 3.4:-96851194 | MS.gene064656:CDS |
| CCCTACAGAAATCCCAACTA+GGG | 0.607182 | 3.4:-96851121 | MS.gene064656:CDS |
| CATGATTTGATTCACCTCAA+AGG | 0.608093 | 3.4:-96851153 | MS.gene064656:CDS |
| TGTCTCCTGAAGAAGAGGAT+AGG | 0.615456 | 3.4:+96850483 | None:intergenic |
| CCAGTTGAAGGTGTTGCTGG+TGG | 0.621705 | 3.4:-96851210 | MS.gene064656:CDS |
| TGCTGGCAGCTAGAAATGAG+AGG | 0.622691 | 3.4:-96850589 | MS.gene064656:CDS |
| ACCCTACAGAAATCCCAACT+AGG | 0.626652 | 3.4:-96851122 | MS.gene064656:CDS |
| CGATTGGATCAACAATGTCA+AGG | 0.632830 | 3.4:+96849901 | None:intergenic |
| CCAGCAACACCTTCAACTGG+TGG | 0.637174 | 3.4:+96851213 | None:intergenic |
| GCTGGCAGCTAGAAATGAGA+GGG | 0.637668 | 3.4:-96850588 | MS.gene064656:CDS |
| ATCGCTTTGGAGTTAAACAT+GGG | 0.638415 | 3.4:-96849048 | MS.gene064656:CDS |
| ATACGCCAAATACAGCAGGA+AGG | 0.652320 | 3.4:+96849580 | None:intergenic |
| ATCAACAGAAATCCAAAGAG+CGG | 0.654235 | 3.4:+96850153 | None:intergenic |
| GGTGGCACAACCACTTCTTG+TGG | 0.654887 | 3.4:+96851231 | None:intergenic |
| TCATACGGGTGGAATGATGG+TGG | 0.661063 | 3.4:-96851180 | MS.gene064656:CDS |
| GTCTCCGATATGGACAACTC+CGG | 0.670262 | 3.4:-96852161 | None:intergenic |
| ATTCGACCAAAAGTTTCATG+GGG | 0.683110 | 3.4:-96850548 | MS.gene064656:CDS |
| GTGGCGGTACATCATACGGG+TGG | 0.684400 | 3.4:-96851191 | MS.gene064656:CDS |
| TTAAACATGGGACAGCTGAG+TGG | 0.705120 | 3.4:-96849036 | MS.gene064656:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATCAAAATTAAACTATTTTT+TGG | - | chr3.4:96850375-96850394 | MS.gene064656:CDS | 10.0% |
| !!! | TTTCATTTCTTATTATTTTA+TGG | - | chr3.4:96849173-96849192 | MS.gene064656:intron | 10.0% |
| !! | AAGTAATTAATTATCACAAA+AGG | + | chr3.4:96850275-96850294 | None:intergenic | 15.0% |
| !! | GAAATTACGTATATATTATA+TGG | + | chr3.4:96850160-96850179 | None:intergenic | 15.0% |
| !! | TAAAATTTGTAACACAAAAT+CGG | + | chr3.4:96851089-96851108 | None:intergenic | 15.0% |
| !! | TATAAGATAAAAATACTAAC+AGG | + | chr3.4:96850088-96850107 | None:intergenic | 15.0% |
| !!! | ATCTTTTTTATTTTGTTTTG+AGG | - | chr3.4:96849732-96849751 | MS.gene064656:CDS | 15.0% |
| !!! | TTTTAATTTTGGGTTTATTA+TGG | - | chr3.4:96851299-96851318 | MS.gene064656:intron | 15.0% |
| !! | AAAAAGTTGTTAGAAGAAAA+AGG | + | chr3.4:96851061-96851080 | None:intergenic | 20.0% |
| !! | AACTCTTGAAAAAATATTAC+TGG | - | chr3.4:96851623-96851642 | MS.gene064656:intron | 20.0% |
| !! | AATGTGCATTTATTCTTAAA+TGG | - | chr3.4:96851719-96851738 | MS.gene064656:intron | 20.0% |
| !! | ACTTAAAATTTATGTGATTG+AGG | - | chr3.4:96849363-96849382 | MS.gene064656:intron | 20.0% |
| !! | ATACATTCAAACCATTATAT+CGG | - | chr3.4:96851753-96851772 | MS.gene064656:intron | 20.0% |
| !! | CTTAAAATTTATGTGATTGA+GGG | - | chr3.4:96849364-96849383 | MS.gene064656:intron | 20.0% |
| !!! | AACTTTTATTACCGATATAA+TGG | + | chr3.4:96851767-96851786 | None:intergenic | 20.0% |
| !!! | AAGTTTTATAACCAAGTAAT+TGG | + | chr3.4:96850339-96850358 | None:intergenic | 20.0% |
| !!! | AGTTTTATAACCAAGTAATT+GGG | + | chr3.4:96850338-96850357 | None:intergenic | 20.0% |
| !!! | ATCTAATTTTTAGGTTGAAA+GGG | - | chr3.4:96851337-96851356 | MS.gene064656:intron | 20.0% |
| !!! | ATTTTGATTTATTGGAATGT+AGG | - | chr3.4:96849756-96849775 | MS.gene064656:CDS | 20.0% |
| !!! | CTGGTACTATTTTTAATTTT+GGG | - | chr3.4:96851289-96851308 | MS.gene064656:intron | 20.0% |
| !!! | TCTGGTACTATTTTTAATTT+TGG | - | chr3.4:96851288-96851307 | MS.gene064656:intron | 20.0% |
| !!! | TTTGAGGAATTTTGATTTAT+TGG | - | chr3.4:96849748-96849767 | MS.gene064656:CDS | 20.0% |
| ! | AATTACCTCATTTAACTAGA+AGG | + | chr3.4:96849654-96849673 | None:intergenic | 25.0% |
| ! | ATTTATAAATACAGACTGCA+TGG | - | chr3.4:96850216-96850235 | MS.gene064656:intron | 25.0% |
| ! | CACTCCATTGATATTATTTA+GGG | - | chr3.4:96850930-96850949 | MS.gene064656:intron | 25.0% |
| ! | GAAGAGAATAATTGAAGAAA+TGG | + | chr3.4:96849015-96849034 | None:intergenic | 25.0% |
| ! | GATATAATGGTTTGAATGTA+TGG | + | chr3.4:96851754-96851773 | None:intergenic | 25.0% |
| ! | GTATTTATACTATCTCAGTT+TGG | - | chr3.4:96851645-96851664 | MS.gene064656:intron | 25.0% |
| ! | TCACTCCATTGATATTATTT+AGG | - | chr3.4:96850929-96850948 | MS.gene064656:intron | 25.0% |
| ! | TGCATAATAATATAGTATCC+TGG | + | chr3.4:96850435-96850454 | None:intergenic | 25.0% |
| ! | TTTATAAATACAGACTGCAT+GGG | - | chr3.4:96850217-96850236 | MS.gene064656:intron | 25.0% |
| !! | AATGATGTTTCTGAATTGTA+AGG | - | chr3.4:96849252-96849271 | MS.gene064656:intron | 25.0% |
| !! | ATGATGTTTCTGAATTGTAA+GGG | - | chr3.4:96849253-96849272 | MS.gene064656:intron | 25.0% |
| !! | GTTTGTGTGACATTTTATAT+GGG | + | chr3.4:96851564-96851583 | None:intergenic | 25.0% |
| !! | TGTTTGTGTGACATTTTATA+TGG | + | chr3.4:96851565-96851584 | None:intergenic | 25.0% |
| !! | TTCTTTTACCAATCTAATGA+CGG | - | chr3.4:96851800-96851819 | MS.gene064656:intron | 25.0% |
| !!! | CATCTAATTTTTAGGTTGAA+AGG | - | chr3.4:96851336-96851355 | MS.gene064656:intron | 25.0% |
| !!! | GGTGACAATTTTTTTAATCA+TGG | - | chr3.4:96850396-96850415 | MS.gene064656:intron | 25.0% |
| !!! | TAGGAGACAGTTATTTTTTT+GGG | - | chr3.4:96849775-96849794 | MS.gene064656:intron | 25.0% |
| !!! | TGTGACAAACCAATTTTAAT+TGG | - | chr3.4:96851833-96851852 | MS.gene064656:intron | 25.0% |
| !!! | TTATTATTTTATGGCCTTAG+AGG | - | chr3.4:96849182-96849201 | MS.gene064656:intron | 25.0% |
| AAAATTTATCGTGGATCACA+TGG | + | chr3.4:96849294-96849313 | None:intergenic | 30.0% | |
| AATAAAGGAAACAACGAAAC+GGG | + | chr3.4:96852013-96852032 | None:intergenic | 30.0% | |
| AATAGGTTTATTTGACCAAC+TGG | + | chr3.4:96850818-96850837 | None:intergenic | 30.0% | |
| AATCTAATGACGGTAACTTA+TGG | - | chr3.4:96851810-96851829 | MS.gene064656:intron | 30.0% | |
| ACAACATAAAGCAAAAACTC+TGG | + | chr3.4:96850494-96850513 | None:intergenic | 30.0% | |
| AGAAATGAAAGCAAAAAACG+TGG | + | chr3.4:96849163-96849182 | None:intergenic | 30.0% | |
| ATAAGTTACCGTCATTAGAT+TGG | + | chr3.4:96851811-96851830 | None:intergenic | 30.0% | |
| CAACCTAAAAATTAGATGCT+TGG | + | chr3.4:96851334-96851353 | None:intergenic | 30.0% | |
| CATGGTTACAAAATTAAACC+AGG | - | chr3.4:96850414-96850433 | MS.gene064656:intron | 30.0% | |
| CATTGGATCAACATTTCAAA+TGG | - | chr3.4:96852106-96852125 | MS.gene064656:intron | 30.0% | |
| CTCAACACTAAAATTTATCG+TGG | + | chr3.4:96849303-96849322 | None:intergenic | 30.0% | |
| CTGAATTCTCTTCAGAAAAT+GGG | - | chr3.4:96851411-96851430 | MS.gene064656:intron | 30.0% | |
| CTTGAAATGACTCTTTACTA+AGG | - | chr3.4:96849821-96849840 | MS.gene064656:intron | 30.0% | |
| GAAGAGAATTCAGAAAATGA+TGG | + | chr3.4:96851404-96851423 | None:intergenic | 30.0% | |
| GAATAAAGGAAACAACGAAA+CGG | + | chr3.4:96852014-96852033 | None:intergenic | 30.0% | |
| GAGAAACGAAAATTCAAAAG+AGG | + | chr3.4:96849109-96849128 | None:intergenic | 30.0% | |
| GGATATCTAGTGAAGAATAA+AGG | + | chr3.4:96852028-96852047 | None:intergenic | 30.0% | |
| GTCAAATAAACCTATTTCCA+GGG | - | chr3.4:96850822-96850841 | MS.gene064656:intron | 30.0% | |
| GTCTATATCTTTGCGAAATA+CGG | - | chr3.4:96851975-96851994 | MS.gene064656:intron | 30.0% | |
| GTCTCCCTAAATAATATCAA+TGG | + | chr3.4:96850937-96850956 | None:intergenic | 30.0% | |
| TATGTTGTAGATAAATCTGC+TGG | - | chr3.4:96850506-96850525 | MS.gene064656:CDS | 30.0% | |
| TATTCGACCAAAAGTTTCAT+GGG | - | chr3.4:96850563-96850582 | MS.gene064656:CDS | 30.0% | |
| TCAATTGTATAAGGAGCTTA+AGG | - | chr3.4:96851184-96851203 | MS.gene064656:CDS | 30.0% | |
| TCTAACAAAGAAATGTTAGC+TGG | - | chr3.4:96849078-96849097 | MS.gene064656:intron | 30.0% | |
| TCTGAATTCTCTTCAGAAAA+TGG | - | chr3.4:96851410-96851429 | MS.gene064656:intron | 30.0% | |
| TGAACAGAAGATCTGTATAA+TGG | + | chr3.4:96851140-96851159 | None:intergenic | 30.0% | |
| TGAGAAACGTCAATTGTATA+AGG | - | chr3.4:96851175-96851194 | MS.gene064656:CDS | 30.0% | |
| TTGCAATACAAACAAACTCT+GGG | - | chr3.4:96851877-96851896 | MS.gene064656:intron | 30.0% | |
| TTTGCAATACAAACAAACTC+TGG | - | chr3.4:96851876-96851895 | MS.gene064656:intron | 30.0% | |
| ! | CACGTGTAATTTTGTGAATA+TGG | + | chr3.4:96850313-96850332 | None:intergenic | 30.0% |
| ! | CATCCAAGCATCTAATTTTT+AGG | - | chr3.4:96851328-96851347 | MS.gene064656:intron | 30.0% |
| ! | GCTACTTTCATAAGATATCT+TGG | + | chr3.4:96849522-96849541 | None:intergenic | 30.0% |
| ! | TTTCATGTTTTCTGTAAGCA+TGG | - | chr3.4:96850176-96850195 | MS.gene064656:intron | 30.0% |
| !!! | GTAGGAGACAGTTATTTTTT+TGG | - | chr3.4:96849774-96849793 | MS.gene064656:intron | 30.0% |
| AAACCATTAGATGAAGTGGT+AGG | - | chr3.4:96851239-96851258 | MS.gene064656:CDS | 35.0% | |
| AAACCTACCACTTCATCTAA+TGG | + | chr3.4:96851245-96851264 | None:intergenic | 35.0% | |
| AAGTTTCTTTCATCACACAG+CGG | + | chr3.4:96849341-96849360 | None:intergenic | 35.0% | |
| ATAACCGTCATAGATCGTTA+CGG | + | chr3.4:96849208-96849227 | None:intergenic | 35.0% | |
| ATCAACAGAAATCCAAAGAG+CGG | + | chr3.4:96850962-96850981 | None:intergenic | 35.0% | |
| ATCAGCCCATTTGCAAAAAT+AGG | + | chr3.4:96852154-96852173 | None:intergenic | 35.0% | |
| ATTCGACCAAAAGTTTCATG+GGG | - | chr3.4:96850564-96850583 | MS.gene064656:CDS | 35.0% | |
| ATTTCTCCTTCATATTGTCC+TGG | + | chr3.4:96851003-96851022 | None:intergenic | 35.0% | |
| CATGATTTGATTCACCTCAA+AGG | - | chr3.4:96849959-96849978 | MS.gene064656:CDS | 35.0% | |
| CGACAAAAGAATCCTTCTTA+AGG | + | chr3.4:96851381-96851400 | None:intergenic | 35.0% | |
| CTACAACTATGTCCTTAAGA+AGG | - | chr3.4:96851366-96851385 | MS.gene064656:intron | 35.0% | |
| CTATTCGACCAAAAGTTTCA+TGG | - | chr3.4:96850562-96850581 | MS.gene064656:CDS | 35.0% | |
| CTTATGACTCGTTTATAAGC+TGG | - | chr3.4:96849471-96849490 | MS.gene064656:intron | 35.0% | |
| GAAGTTAAATCTCACTGTCT+GGG | - | chr3.4:96851484-96851503 | MS.gene064656:intron | 35.0% | |
| GGTCAAATAAACCTATTTCC+AGG | - | chr3.4:96850821-96850840 | MS.gene064656:intron | 35.0% | |
| TAAATTTATCTGCGTCATCC+AGG | - | chr3.4:96849851-96849870 | MS.gene064656:intron | 35.0% | |
| TAATTGAAGAAATGGCACGA+TGG | + | chr3.4:96849007-96849026 | None:intergenic | 35.0% | |
| TATTGCAAACTGACTGCATT+CGG | + | chr3.4:96851865-96851884 | None:intergenic | 35.0% | |
| TCAAGAAATGCCTAGACATT+TGG | - | chr3.4:96850060-96850079 | MS.gene064656:intron | 35.0% | |
| TCAGCCCATTTGCAAAAATA+GGG | + | chr3.4:96852153-96852172 | None:intergenic | 35.0% | |
| TCGTAGAGAGAGATTTGAAA+TGG | + | chr3.4:96851462-96851481 | None:intergenic | 35.0% | |
| TGAAGTTAAATCTCACTGTC+TGG | - | chr3.4:96851483-96851502 | MS.gene064656:intron | 35.0% | |
| TGCAATACAAACAAACTCTG+GGG | - | chr3.4:96851878-96851897 | MS.gene064656:intron | 35.0% | |
| TGGAAAACCATTAGATGAAG+TGG | - | chr3.4:96851235-96851254 | MS.gene064656:CDS | 35.0% | |
| TGGTTGAAGTTGACAAAGAA+AGG | + | chr3.4:96851120-96851139 | None:intergenic | 35.0% | |
| TTCTGTTCAAAGTTCAAGCA+AGG | - | chr3.4:96851151-96851170 | MS.gene064656:CDS | 35.0% | |
| ! | AGATATAGACCAAAAGTGCA+CGG | + | chr3.4:96851965-96851984 | None:intergenic | 35.0% |
| ! | GTGACATTTTATATGGGTCA+AGG | + | chr3.4:96851558-96851577 | None:intergenic | 35.0% |
| ! | TCTAATGGTTTTCCATCGAT+TGG | + | chr3.4:96851230-96851249 | None:intergenic | 35.0% |
| ! | TCTTCCGTTTTCGCAATTTA+CGG | - | chr3.4:96849030-96849049 | MS.gene064656:CDS | 35.0% |
| !! | ATCGCTTTGGAGTTAAACAT+GGG | - | chr3.4:96852064-96852083 | MS.gene064656:intron | 35.0% |
| AAACAATCAGATGTGTACCC+TGG | + | chr3.4:96850842-96850861 | None:intergenic | 40.0% | |
| AAATGGGTCAGCAGATGTAA+TGG | - | chr3.4:96851427-96851446 | MS.gene064656:intron | 40.0% | |
| AACAATCAGTCTGCCAACAT+TGG | + | chr3.4:96850723-96850742 | None:intergenic | 40.0% | |
| AATGTTGGCAGACTGATTGT+TGG | - | chr3.4:96850722-96850741 | MS.gene064656:intron | 40.0% | |
| ACAATCAGTCTGCCAACATT+GGG | + | chr3.4:96850722-96850741 | None:intergenic | 40.0% | |
| ACATGCACTAAATCCCTAGT+TGG | + | chr3.4:96850007-96850026 | None:intergenic | 40.0% | |
| ATGTTGGCAGACTGATTGTT+GGG | - | chr3.4:96850723-96850742 | MS.gene064656:intron | 40.0% | |
| ATTGCAAACTGACTGCATTC+GGG | + | chr3.4:96851864-96851883 | None:intergenic | 40.0% | |
| CAGCCCATTTGCAAAAATAG+GGG | + | chr3.4:96852152-96852171 | None:intergenic | 40.0% | |
| CATGCACTAAATCCCTAGTT+GGG | + | chr3.4:96850006-96850025 | None:intergenic | 40.0% | |
| CGATTGGATCAACAATGTCA+AGG | + | chr3.4:96851214-96851233 | None:intergenic | 40.0% | |
| CGGGATGCACCAATTAAAAT+TGG | + | chr3.4:96851845-96851864 | None:intergenic | 40.0% | |
| CTAGGGATTTAGTGCATGTA+TGG | - | chr3.4:96850008-96850027 | MS.gene064656:intron | 40.0% | |
| GACATTGTTGATCCAATCGA+TGG | - | chr3.4:96851215-96851234 | MS.gene064656:CDS | 40.0% | |
| GAGACCGTAAATTGCGAAAA+CGG | + | chr3.4:96849037-96849056 | None:intergenic | 40.0% | |
| GATATCCGATACTGTGATTG+AGG | - | chr3.4:96852041-96852060 | MS.gene064656:intron | 40.0% | |
| GCTATAGTCTAATGAGTGCT+TGG | + | chr3.4:96849432-96849451 | None:intergenic | 40.0% | |
| TTAGTCAATTGACATGACCC+AGG | + | chr3.4:96849621-96849640 | None:intergenic | 40.0% | |
| ! | GAACTACCCCATGAAACTTT+TGG | + | chr3.4:96850573-96850592 | None:intergenic | 40.0% |
| ! | GTGCTCCTTCTAGTTAAATG+AGG | - | chr3.4:96849646-96849665 | MS.gene064656:CDS | 40.0% |
| ! | TCAGTCATTGTGTGTCATTC+TGG | - | chr3.4:96851270-96851289 | MS.gene064656:intron | 40.0% |
| ! | TTTCATTCACCGTGCACTTT+TGG | - | chr3.4:96851953-96851972 | MS.gene064656:intron | 40.0% |
| !! | GATCGCTTTGGAGTTAAACA+TGG | - | chr3.4:96852063-96852082 | MS.gene064656:intron | 40.0% |
| !!! | CAGCCCCTATTTTTGCAAAT+GGG | - | chr3.4:96852146-96852165 | MS.gene064656:intron | 40.0% |
| !!! | TCAGCCCCTATTTTTGCAAA+TGG | - | chr3.4:96852145-96852164 | MS.gene064656:intron | 40.0% |
| AAATGGCACGATGGATGTGA+GGG | + | chr3.4:96848998-96849017 | None:intergenic | 45.0% | |
| AAGGATACGCCAAATACAGC+AGG | + | chr3.4:96851539-96851558 | None:intergenic | 45.0% | |
| AATACAGACTGCATGGGTGT+TGG | - | chr3.4:96850223-96850242 | MS.gene064656:intron | 45.0% | |
| ACATCATACGGGTGGAATGA+TGG | - | chr3.4:96849929-96849948 | MS.gene064656:CDS | 45.0% | |
| ACCCTACAGAAATCCCAACT+AGG | - | chr3.4:96849990-96850009 | MS.gene064656:intron | 45.0% | |
| ACTGTGATTGAGGATCGCTT+TGG | - | chr3.4:96852051-96852070 | MS.gene064656:intron | 45.0% | |
| AGAGTAGAAGGAGAACTGAC+CGG | + | chr3.4:96848973-96848992 | None:intergenic | 45.0% | |
| AGGAAATCCACCACAAGAAG+TGG | - | chr3.4:96849871-96849890 | MS.gene064656:intron | 45.0% | |
| AGTGCTTATCCAACATAGCC+TGG | - | chr3.4:96849600-96849619 | MS.gene064656:CDS | 45.0% | |
| ATACGCCAAATACAGCAGGA+AGG | + | chr3.4:96851535-96851554 | None:intergenic | 45.0% | |
| ATAGATCGTTACGGCCTCTA+AGG | + | chr3.4:96849199-96849218 | None:intergenic | 45.0% | |
| CAACCTCCAGGACAATATGA+AGG | - | chr3.4:96850994-96851013 | MS.gene064656:intron | 45.0% | |
| CAATCAGTCTGCCAACATTG+GGG | + | chr3.4:96850721-96850740 | None:intergenic | 45.0% | |
| CAGATGTGTACCCTGGAAAT+AGG | + | chr3.4:96850835-96850854 | None:intergenic | 45.0% | |
| CATCAAGCATCTTGTGCAGA+CGG | + | chr3.4:96850897-96850916 | None:intergenic | 45.0% | |
| CCCTACAGAAATCCCAACTA+GGG | - | chr3.4:96849991-96850010 | MS.gene064656:intron | 45.0% | |
| CCCTAGTTGGGATTTCTGTA+GGG | + | chr3.4:96849994-96850013 | None:intergenic | 45.0% | |
| CTAACAGGCTCCAAATGTCT+AGG | + | chr3.4:96850073-96850092 | None:intergenic | 45.0% | |
| GCGATCCTCAATCACAGTAT+CGG | + | chr3.4:96852049-96852068 | None:intergenic | 45.0% | |
| GCGTCAGGTACACCTAAAAT+GGG | + | chr3.4:96850776-96850795 | None:intergenic | 45.0% | |
| GGGATTTCTGTAGGGTCAAT+TGG | + | chr3.4:96849986-96850005 | None:intergenic | 45.0% | |
| GTGCTTATCCAACATAGCCT+GGG | - | chr3.4:96849601-96849620 | MS.gene064656:CDS | 45.0% | |
| GTTCCTCTTGATCTTCCAGT+TGG | - | chr3.4:96850800-96850819 | MS.gene064656:intron | 45.0% | |
| TACACGTGAGCCCAATTACT+TGG | - | chr3.4:96850325-96850344 | MS.gene064656:CDS | 45.0% | |
| TACGCCAAATACAGCAGGAA+GGG | + | chr3.4:96851534-96851553 | None:intergenic | 45.0% | |
| TAGGGTCAATTGGTCCTTTG+AGG | + | chr3.4:96849976-96849995 | None:intergenic | 45.0% | |
| TATCCTCTTCTTCAGGAGAC+AGG | - | chr3.4:96850631-96850650 | MS.gene064656:intron | 45.0% | |
| TCCCTAGTTGGGATTTCTGT+AGG | + | chr3.4:96849995-96850014 | None:intergenic | 45.0% | |
| TCTCCTTCATATTGTCCTGG+AGG | + | chr3.4:96851000-96851019 | None:intergenic | 45.0% | |
| TGACCAACTGGAAGATCAAG+AGG | + | chr3.4:96850806-96850825 | None:intergenic | 45.0% | |
| TGTCTCCTGAAGAAGAGGAT+AGG | + | chr3.4:96850632-96850651 | None:intergenic | 45.0% | |
| TTAAACATGGGACAGCTGAG+TGG | - | chr3.4:96852076-96852095 | MS.gene064656:intron | 45.0% | |
| TTGGGAAGTCTCTACTGTTG+CGG | - | chr3.4:96850741-96850760 | MS.gene064656:intron | 45.0% | |
| ! | GTCAGCAGATGTAATGGAAG+AGG | - | chr3.4:96851433-96851452 | MS.gene064656:intron | 45.0% |
| !! | ACTTCTTGTGGTGGATTTCC+TGG | + | chr3.4:96849872-96849891 | None:intergenic | 45.0% |
| !! | TAATGAGTGCTTGGTGCTTG+TGG | + | chr3.4:96849423-96849442 | None:intergenic | 45.0% |
| AGCAGGAAGGGAAGGAGTTT+CGG | + | chr3.4:96851522-96851541 | None:intergenic | 50.0% | |
| AGCGACCTATCCTCTTCTTC+AGG | - | chr3.4:96850624-96850643 | MS.gene064656:intron | 50.0% | |
| AGCTGAGTGGTATGAGGCAT+TGG | - | chr3.4:96852089-96852108 | MS.gene064656:intron | 50.0% | |
| ATGCCAAGCACAGCGAACAT+TGG | - | chr3.4:96850034-96850053 | MS.gene064656:intron | 50.0% | |
| CAACATTGGGGTCAGCAACT+CGG | + | chr3.4:96850709-96850728 | None:intergenic | 50.0% | |
| CAACCTGTCTCCTGAAGAAG+AGG | + | chr3.4:96850637-96850656 | None:intergenic | 50.0% | |
| CCAAATACAGCAGGAAGGGA+AGG | + | chr3.4:96851530-96851549 | None:intergenic | 50.0% | |
| CCTTCCCTTCCTGCTGTATT+TGG | - | chr3.4:96851527-96851546 | MS.gene064656:intron | 50.0% | |
| CGCGTCAGGTACACCTAAAA+TGG | + | chr3.4:96850777-96850796 | None:intergenic | 50.0% | |
| CTCTTCTTCAGGAGACAGGT+TGG | - | chr3.4:96850635-96850654 | MS.gene064656:intron | 50.0% | |
| GAAATGGCACGATGGATGTG+AGG | + | chr3.4:96848999-96849018 | None:intergenic | 50.0% | |
| GAGGCCGTAACGATCTATGA+CGG | - | chr3.4:96849201-96849220 | MS.gene064656:intron | 50.0% | |
| GATGTGAGGGTGAGAGTAGA+AGG | + | chr3.4:96848985-96849004 | None:intergenic | 50.0% | |
| GCTGGCAGCTAGAAATGAGA+GGG | - | chr3.4:96850524-96850543 | MS.gene064656:CDS | 50.0% | |
| GTTCCAAGTGATCAACCTCC+AGG | - | chr3.4:96850982-96851001 | MS.gene064656:intron | 50.0% | |
| TCATACGGGTGGAATGATGG+TGG | - | chr3.4:96849932-96849951 | MS.gene064656:CDS | 50.0% | |
| TGACATGACCCAGGCTATGT+TGG | + | chr3.4:96849612-96849631 | None:intergenic | 50.0% | |
| TGCTGGCAGCTAGAAATGAG+AGG | - | chr3.4:96850523-96850542 | MS.gene064656:CDS | 50.0% | |
| TTAGGGAGACTACCGCTCTT+TGG | - | chr3.4:96850947-96850966 | MS.gene064656:intron | 50.0% | |
| ! | TGTCCTGGAGGTTGATCACT+TGG | + | chr3.4:96850988-96851007 | None:intergenic | 50.0% |
| !! | GGGGTAGTTCTAGTGTTGCT+GGG | - | chr3.4:96850583-96850602 | MS.gene064656:CDS | 50.0% |
| !! | TGGGGTAGTTCTAGTGTTGC+TGG | - | chr3.4:96850582-96850601 | MS.gene064656:CDS | 50.0% |
| CCACCAGCAACACCTTCAAC+TGG | + | chr3.4:96849905-96849924 | None:intergenic | 55.0% | |
| CCAGCAACACCTTCAACTGG+TGG | + | chr3.4:96849902-96849921 | None:intergenic | 55.0% | |
| CGAGTTGCTGACCCCAATGT+TGG | - | chr3.4:96850707-96850726 | MS.gene064656:intron | 55.0% | |
| GAAGTCTCTACTGTTGCGGC+GGG | - | chr3.4:96850745-96850764 | MS.gene064656:intron | 55.0% | |
| GCAGGAAGGGAAGGAGTTTC+GGG | + | chr3.4:96851521-96851540 | None:intergenic | 55.0% | |
| GCTCCAATGTTCGCTGTGCT+TGG | + | chr3.4:96850040-96850059 | None:intergenic | 55.0% | |
| GGAAGTCTCTACTGTTGCGG+CGG | - | chr3.4:96850744-96850763 | MS.gene064656:intron | 55.0% | |
| GGCACAACCACTTCTTGTGG+TGG | + | chr3.4:96849881-96849900 | None:intergenic | 55.0% | |
| GGTGGCACAACCACTTCTTG+TGG | + | chr3.4:96849884-96849903 | None:intergenic | 55.0% | |
| GTGGTTGTGCCACCAGTTGA+AGG | - | chr3.4:96849890-96849909 | MS.gene064656:CDS | 55.0% | |
| TCAAGAGGAACAAGCGCGTC+AGG | + | chr3.4:96850791-96850810 | None:intergenic | 55.0% | |
| TGGGACAGCTGAGTGGTATG+AGG | - | chr3.4:96852083-96852102 | MS.gene064656:intron | 55.0% | |
| ! | TAGTGTTGCTGGGACTGTGC+AGG | - | chr3.4:96850593-96850612 | MS.gene064656:CDS | 55.0% |
| !! | CCACCAGTTGAAGGTGTTGC+TGG | - | chr3.4:96849899-96849918 | MS.gene064656:CDS | 55.0% |
| !! | CCAGTTGAAGGTGTTGCTGG+TGG | - | chr3.4:96849902-96849921 | MS.gene064656:CDS | 55.0% |
| !! | CTGGTGGCGGTACATCATAC+GGG | - | chr3.4:96849918-96849937 | MS.gene064656:CDS | 55.0% |
| !! | GCTGGTGGCGGTACATCATA+CGG | - | chr3.4:96849917-96849936 | MS.gene064656:CDS | 55.0% |
| !! | GTTGAAGGTGTTGCTGGTGG+CGG | - | chr3.4:96849905-96849924 | MS.gene064656:CDS | 55.0% |
| GTGGCGGTACATCATACGGG+TGG | - | chr3.4:96849921-96849940 | MS.gene064656:CDS | 60.0% | |
| GTCTCTACTGTTGCGGCGGG+TGG | - | chr3.4:96850748-96850767 | MS.gene064656:intron | 65.0% | |
| ! | CGGCGGGTGGTGCCCATTTT+AGG | - | chr3.4:96850761-96850780 | MS.gene064656:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 96848960 | 96852174 | 96848960 | ID=MS.gene064656 |
| chr3.4 | mRNA | 96848960 | 96852174 | 96848960 | ID=MS.gene064656.t1;Parent=MS.gene064656 |
| chr3.4 | exon | 96852162 | 96852174 | 96852162 | ID=MS.gene064656.t1.exon1;Parent=MS.gene064656.t1 |
| chr3.4 | CDS | 96852162 | 96852174 | 96852162 | ID=cds.MS.gene064656.t1;Parent=MS.gene064656.t1 |
| chr3.4 | exon | 96851047 | 96851261 | 96851047 | ID=MS.gene064656.t1.exon2;Parent=MS.gene064656.t1 |
| chr3.4 | CDS | 96851047 | 96851261 | 96851047 | ID=cds.MS.gene064656.t1;Parent=MS.gene064656.t1 |
| chr3.4 | exon | 96850482 | 96850618 | 96850482 | ID=MS.gene064656.t1.exon3;Parent=MS.gene064656.t1 |
| chr3.4 | CDS | 96850482 | 96850618 | 96850482 | ID=cds.MS.gene064656.t1;Parent=MS.gene064656.t1 |
| chr3.4 | exon | 96850291 | 96850401 | 96850291 | ID=MS.gene064656.t1.exon4;Parent=MS.gene064656.t1 |
| chr3.4 | CDS | 96850291 | 96850401 | 96850291 | ID=cds.MS.gene064656.t1;Parent=MS.gene064656.t1 |
| chr3.4 | exon | 96850082 | 96850183 | 96850082 | ID=MS.gene064656.t1.exon5;Parent=MS.gene064656.t1 |
| chr3.4 | CDS | 96850082 | 96850183 | 96850082 | ID=cds.MS.gene064656.t1;Parent=MS.gene064656.t1 |
| chr3.4 | exon | 96849878 | 96849986 | 96849878 | ID=MS.gene064656.t1.exon6;Parent=MS.gene064656.t1 |
| chr3.4 | CDS | 96849878 | 96849986 | 96849878 | ID=cds.MS.gene064656.t1;Parent=MS.gene064656.t1 |
| chr3.4 | exon | 96849584 | 96849784 | 96849584 | ID=MS.gene064656.t1.exon7;Parent=MS.gene064656.t1 |
| chr3.4 | CDS | 96849584 | 96849784 | 96849584 | ID=cds.MS.gene064656.t1;Parent=MS.gene064656.t1 |
| chr3.4 | exon | 96848960 | 96849092 | 96848960 | ID=MS.gene064656.t1.exon8;Parent=MS.gene064656.t1 |
| chr3.4 | CDS | 96848960 | 96849092 | 96848960 | ID=cds.MS.gene064656.t1;Parent=MS.gene064656.t1 |
| Gene Sequence |
| Protein sequence |
