Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064675.t1 | XP_013462132.1 | 96.8 | 310 | 10 | 0 | 1 | 310 | 1 | 310 | 4.40E-168 | 600.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064675.t1 | Q9FUW6 | 81.0 | 310 | 57 | 1 | 1 | 310 | 1 | 308 | 2.1e-142 | 506.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064675.t1 | I3SC37 | 96.8 | 310 | 10 | 0 | 1 | 310 | 1 | 310 | 3.2e-168 | 600.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052358 | MS.gene064675 | 0.845383 | 4.20E-59 | -1.69E-46 |
| MS.gene052361 | MS.gene064675 | 0.813769 | 2.16E-51 | -1.69E-46 |
| MS.gene061040 | MS.gene064675 | 0.814731 | 1.33E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064675.t1 | MTR_3g111980 | 96.774 | 310 | 10 | 0 | 1 | 310 | 1 | 310 | 0.0 | 603 |
| MS.gene064675.t1 | MTR_3g111990 | 76.452 | 310 | 71 | 1 | 1 | 310 | 1 | 308 | 1.34e-173 | 483 |
| MS.gene064675.t1 | MTR_3g116840 | 72.876 | 306 | 81 | 1 | 5 | 310 | 9 | 312 | 1.59e-167 | 468 |
| MS.gene064675.t1 | MTR_5g020740 | 70.227 | 309 | 90 | 1 | 2 | 310 | 3 | 309 | 1.15e-157 | 442 |
| MS.gene064675.t1 | MTR_4g070370 | 61.765 | 306 | 115 | 1 | 3 | 308 | 6 | 309 | 8.74e-139 | 395 |
| MS.gene064675.t1 | MTR_4g070340 | 58.442 | 308 | 126 | 1 | 1 | 308 | 3 | 308 | 1.62e-132 | 380 |
| MS.gene064675.t1 | MTR_4g070340 | 57.468 | 308 | 124 | 2 | 1 | 308 | 3 | 303 | 3.18e-127 | 366 |
| MS.gene064675.t1 | MTR_5g020800 | 57.321 | 321 | 123 | 4 | 1 | 310 | 1 | 318 | 5.73e-124 | 357 |
| MS.gene064675.t1 | MTR_5g020760 | 57.009 | 321 | 124 | 4 | 1 | 310 | 1 | 318 | 1.75e-123 | 356 |
| MS.gene064675.t1 | MTR_4g070340 | 58.300 | 247 | 101 | 1 | 62 | 308 | 15 | 259 | 2.72e-104 | 306 |
| MS.gene064675.t1 | MTR_5g020760 | 58.647 | 266 | 97 | 3 | 1 | 255 | 1 | 264 | 4.88e-104 | 305 |
| MS.gene064675.t1 | MTR_4g070360 | 49.032 | 310 | 154 | 2 | 3 | 310 | 2 | 309 | 1.87e-103 | 305 |
| MS.gene064675.t1 | MTR_5g027290 | 46.645 | 313 | 155 | 5 | 4 | 309 | 3 | 310 | 1.86e-93 | 280 |
| MS.gene064675.t1 | MTR_8g071130 | 46.178 | 314 | 160 | 4 | 3 | 310 | 2 | 312 | 1.52e-92 | 277 |
| MS.gene064675.t1 | MTR_3g008100 | 45.338 | 311 | 160 | 5 | 2 | 310 | 3 | 305 | 1.37e-90 | 273 |
| MS.gene064675.t1 | MTR_5g027240 | 46.452 | 310 | 154 | 5 | 4 | 306 | 3 | 307 | 1.80e-90 | 272 |
| MS.gene064675.t1 | MTR_3g008140 | 46.774 | 310 | 156 | 5 | 2 | 310 | 3 | 304 | 1.69e-89 | 270 |
| MS.gene064675.t1 | MTR_3g007970 | 44.839 | 310 | 163 | 4 | 2 | 310 | 3 | 305 | 1.99e-87 | 265 |
| MS.gene064675.t1 | MTR_3g008100 | 44.373 | 311 | 156 | 5 | 2 | 310 | 3 | 298 | 3.00e-86 | 261 |
| MS.gene064675.t1 | MTR_1g093720 | 39.159 | 309 | 183 | 3 | 4 | 310 | 13 | 318 | 6.49e-75 | 234 |
| MS.gene064675.t1 | MTR_3g008100 | 45.641 | 195 | 97 | 4 | 2 | 194 | 3 | 190 | 2.89e-49 | 164 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064675.t1 | AT4G39230 | 72.258 | 310 | 84 | 1 | 1 | 310 | 1 | 308 | 1.79e-166 | 465 |
| MS.gene064675.t1 | AT1G75280 | 71.987 | 307 | 85 | 1 | 3 | 309 | 4 | 309 | 3.70e-157 | 441 |
| MS.gene064675.t1 | AT1G75290 | 67.532 | 308 | 100 | 0 | 2 | 309 | 3 | 310 | 2.05e-152 | 430 |
| MS.gene064675.t1 | AT1G75290 | 67.532 | 308 | 100 | 0 | 2 | 309 | 30 | 337 | 9.93e-152 | 429 |
| MS.gene064675.t1 | AT1G75300 | 63.043 | 322 | 102 | 3 | 2 | 309 | 3 | 321 | 2.79e-141 | 402 |
| MS.gene064675.t1 | AT1G19540 | 60.390 | 308 | 120 | 1 | 5 | 310 | 3 | 310 | 2.57e-129 | 371 |
| MS.gene064675.t1 | AT1G19540 | 62.451 | 253 | 93 | 1 | 5 | 255 | 3 | 255 | 4.65e-105 | 307 |
| MS.gene064675.t1 | AT4G34540 | 47.727 | 308 | 154 | 2 | 3 | 310 | 6 | 306 | 1.06e-99 | 295 |
| MS.gene064675.t1 | AT1G32100 | 44.586 | 314 | 164 | 4 | 3 | 310 | 8 | 317 | 1.15e-83 | 255 |
| MS.gene064675.t1 | AT4G13660 | 44.762 | 315 | 164 | 4 | 2 | 310 | 7 | 317 | 1.17e-83 | 255 |
| MS.gene064675.t1 | AT4G13660 | 44.762 | 315 | 164 | 4 | 2 | 310 | 7 | 317 | 1.17e-83 | 255 |
Find 76 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAATAGCACGTCGAATTT+TGG | 0.137471 | 3.4:-97042865 | None:intergenic |
| TTGAATGAATAAATGTTCTT+TGG | 0.240740 | 3.4:-97043295 | None:intergenic |
| TGAATGAATAAATGTTCTTT+GGG | 0.284153 | 3.4:-97043294 | None:intergenic |
| CTCAATAATTTCAAAACTTT+AGG | 0.291956 | 3.4:+97041477 | MS.gene064675:CDS |
| GAAGATTATCGCTGCAATTA+AGG | 0.319373 | 3.4:+97041806 | MS.gene064675:CDS |
| TATATGACGACTTTGTCTTT+TGG | 0.336858 | 3.4:-97042984 | None:intergenic |
| CAAAACTTTAGGCGTCAATT+TGG | 0.338853 | 3.4:+97041488 | MS.gene064675:CDS |
| AAAGACAAAGTCGTCATATA+TGG | 0.346716 | 3.4:+97042987 | MS.gene064675:CDS |
| TTTGTGATTGAGCCATCTTT+TGG | 0.365839 | 3.4:+97043565 | MS.gene064675:CDS |
| ACAGTTGTGTACTTGACATC+TGG | 0.375136 | 3.4:-97043610 | None:intergenic |
| GCCTTGTGGGAGAAGAAGAT+TGG | 0.381870 | 3.4:+97043328 | MS.gene064675:CDS |
| TGGATCATCCACAGCTCTAA+TGG | 0.384230 | 3.4:-97043239 | None:intergenic |
| GTGTCTAGCAACTACTTTGC+TGG | 0.392084 | 3.4:+97042912 | MS.gene064675:CDS |
| ATCGATAATACCACGTTGAT+TGG | 0.408391 | 3.4:-97043505 | None:intergenic |
| GGAGGTGGGGCGAATTGTCC+TGG | 0.408477 | 3.4:-97042960 | None:intergenic |
| AGAATCTTATTCAATGTCCT+TGG | 0.431387 | 3.4:-97043259 | None:intergenic |
| CAACGAGCTTGTAGCCTTGT+GGG | 0.437114 | 3.4:+97043315 | MS.gene064675:CDS |
| AAACTTCTCAAGGATATTCA+AGG | 0.440563 | 3.4:+97043385 | MS.gene064675:CDS |
| TAAGGAGGCTGGTAACGTTA+AGG | 0.454571 | 3.4:+97041824 | MS.gene064675:CDS |
| TTGAGGAGATTAGCCTTGGC+AGG | 0.461709 | 3.4:-97041459 | None:intergenic |
| AATACCACGTTGATTGGAAT+AGG | 0.469491 | 3.4:-97043499 | None:intergenic |
| TCCTTGAGAAGTTTATCCTC+TGG | 0.484267 | 3.4:-97043376 | None:intergenic |
| CTCCCCACATTAGCTCAGCC+AGG | 0.490923 | 3.4:+97042942 | MS.gene064675:CDS |
| GATCAGCGAGGGTGGATTCA+CGG | 0.492277 | 3.4:-97041437 | None:intergenic |
| CCAGCAAAATCTGCATTTGA+AGG | 0.504040 | 3.4:+97042837 | MS.gene064675:CDS |
| TTCACGGACCAATGCAAAAG+TGG | 0.510674 | 3.4:-97041421 | None:intergenic |
| TACTTCAAACGAACTGATCA+AGG | 0.512935 | 3.4:-97043642 | None:intergenic |
| ATCGCTGCAATTAAGGAGGC+TGG | 0.516620 | 3.4:+97041813 | MS.gene064675:CDS |
| GTAGAAGCAAGTGCAAAAGC+TGG | 0.517859 | 3.4:+97041393 | MS.gene064675:CDS |
| GGTAGGCCACGCTCTGATTG+AGG | 0.518193 | 3.4:+97041776 | MS.gene064675:CDS |
| ATTATTGAGGAGATTAGCCT+TGG | 0.522079 | 3.4:-97041463 | None:intergenic |
| TCCAGAGGATAAACTTCTCA+AGG | 0.522426 | 3.4:+97043375 | MS.gene064675:CDS |
| CCTTGTGGGAGAAGAAGATT+GGG | 0.523149 | 3.4:+97043329 | MS.gene064675:CDS |
| CACCACTCGGTGTTTGTGAA+AGG | 0.525734 | 3.4:+97043529 | MS.gene064675:CDS |
| TTGTCCTGGCTGAGCTAATG+TGG | 0.535528 | 3.4:-97042946 | None:intergenic |
| TGTCTAGCAACTACTTTGCT+GGG | 0.539689 | 3.4:+97042913 | MS.gene064675:CDS |
| TAAGCCTCAACCCCAAAAGA+TGG | 0.540084 | 3.4:-97043577 | None:intergenic |
| CCCAATCTTCTTCTCCCACA+AGG | 0.547082 | 3.4:-97043329 | None:intergenic |
| CAGTTGTGTACTTGACATCT+GGG | 0.555264 | 3.4:-97043609 | None:intergenic |
| GTTGCTAGACACATATGTGT+AGG | 0.558044 | 3.4:-97042901 | None:intergenic |
| TCAACGAGCTTGTAGCCTTG+TGG | 0.567546 | 3.4:+97043314 | MS.gene064675:CDS |
| GAATGAATAAATGTTCTTTG+GGG | 0.568027 | 3.4:-97043293 | None:intergenic |
| AATGAATAAATGTTCTTTGG+GGG | 0.568257 | 3.4:-97043292 | None:intergenic |
| TCTGTATGATCATGAGAACT+TGG | 0.570219 | 3.4:+97041716 | MS.gene064675:CDS |
| AACATTCACCATTAGAGCTG+TGG | 0.581419 | 3.4:+97043231 | MS.gene064675:CDS |
| AGTAATCAAGCAGGTAGATG+TGG | 0.585296 | 3.4:+97041743 | MS.gene064675:CDS |
| GGTAGATGTGGTCATATCTA+CGG | 0.586142 | 3.4:+97041755 | MS.gene064675:CDS |
| TGTCCTGGCTGAGCTAATGT+GGG | 0.586984 | 3.4:-97042945 | None:intergenic |
| CTTGGTGAAAGTAATCAAGC+AGG | 0.588181 | 3.4:+97041734 | MS.gene064675:CDS |
| TTGCTAGACACATATGTGTA+GGG | 0.589350 | 3.4:-97042900 | None:intergenic |
| CACCCTCGCTGATCCTGCCA+AGG | 0.595340 | 3.4:+97041446 | MS.gene064675:CDS |
| AAAGTCGTCATATATGGCGA+TGG | 0.599327 | 3.4:+97042993 | MS.gene064675:CDS |
| GGTATTATCGATCCACCACT+CGG | 0.602530 | 3.4:+97043516 | MS.gene064675:CDS |
| CAGCAAAATCTGCATTTGAA+GGG | 0.606294 | 3.4:+97042838 | MS.gene064675:CDS |
| CGACGTGCTATTGAAGCGGA+AGG | 0.614282 | 3.4:+97042873 | MS.gene064675:CDS |
| TTAGAGCTGTGGATGATCCA+AGG | 0.628287 | 3.4:+97043242 | MS.gene064675:CDS |
| AATTCGACGTGCTATTGAAG+CGG | 0.628628 | 3.4:+97042869 | MS.gene064675:CDS |
| CTTTCACAAACACCGAGTGG+TGG | 0.628695 | 3.4:-97043528 | None:intergenic |
| TCACGGACCAATGCAAAAGT+GGG | 0.629925 | 3.4:-97041420 | None:intergenic |
| TTCAACAAGGAAGATGACAT+TGG | 0.630695 | 3.4:+97043208 | MS.gene064675:CDS |
| CTTGGCAGGATCAGCGAGGG+TGG | 0.631457 | 3.4:-97041445 | None:intergenic |
| ACGTCATTCCCAAATTCCGA+AGG | 0.641793 | 3.4:-97042792 | None:intergenic |
| ATCGGAGGAACAGGTTACAT+CGG | 0.642196 | 3.4:+97041360 | MS.gene064675:CDS |
| GATGTGGTCATATCTACGGT+AGG | 0.649142 | 3.4:+97041759 | MS.gene064675:CDS |
| CTTGATCCTCAATCAGAGCG+TGG | 0.652635 | 3.4:-97041782 | None:intergenic |
| ATGTACAGCGGTGTTCAACA+AGG | 0.653602 | 3.4:+97043195 | MS.gene064675:intron |
| TGACGTTGATCGTGTCCATG+CGG | 0.662937 | 3.4:+97042809 | MS.gene064675:CDS |
| AGCCTTGGCAGGATCAGCGA+GGG | 0.665918 | 3.4:-97041448 | None:intergenic |
| GATTATCGCTGCAATTAAGG+AGG | 0.668758 | 3.4:+97041809 | MS.gene064675:CDS |
| CACCTTTCACAAACACCGAG+TGG | 0.683877 | 3.4:-97043531 | None:intergenic |
| TATGGCGATGGAAATCCCAA+AGG | 0.691099 | 3.4:+97043005 | MS.gene064675:CDS |
| AGATGTCAAGTACACAACTG+TGG | 0.707472 | 3.4:+97043612 | MS.gene064675:CDS |
| TAGCCTTGGCAGGATCAGCG+AGG | 0.707487 | 3.4:-97041449 | None:intergenic |
| TGTCAAGTACACAACTGTGG+AGG | 0.712034 | 3.4:+97043615 | MS.gene064675:CDS |
| GTCCTGGCTGAGCTAATGTG+GGG | 0.743725 | 3.4:-97042944 | None:intergenic |
| GGCTCCTATTCCAATCAACG+TGG | 0.763745 | 3.4:+97043495 | MS.gene064675:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATAATATTAAGTTTGAAA+TGG | + | chr3.4:97041671-97041690 | MS.gene064675:intron | 10.0% |
| !! | TCTATAATATAATATAATTC+TGG | + | chr3.4:97041862-97041881 | MS.gene064675:intron | 10.0% |
| !!! | AAATAGTTTTATTTTTTTTG+AGG | + | chr3.4:97042522-97042541 | MS.gene064675:intron | 10.0% |
| !!! | AATAGTTTTATTTTTTTTGA+GGG | + | chr3.4:97042523-97042542 | MS.gene064675:intron | 10.0% |
| !!! | GAATAGTTTTATTTTTTTTA+AGG | + | chr3.4:97042489-97042508 | MS.gene064675:intron | 10.0% |
| !! | AAAAAATGTGAAAAAGAAAA+AGG | - | chr3.4:97042114-97042133 | None:intergenic | 15.0% |
| !! | AAAAATGTGAAAAAGAAAAA+GGG | - | chr3.4:97042113-97042132 | None:intergenic | 15.0% |
| !! | AATATAATCAGAATATTAGT+TGG | - | chr3.4:97042582-97042601 | None:intergenic | 15.0% |
| !! | AATCAAATTCATTAAAAAAG+TGG | - | chr3.4:97041540-97041559 | None:intergenic | 15.0% |
| !! | ACTTTACATATTATCAATTA+GGG | + | chr3.4:97042220-97042239 | MS.gene064675:intron | 15.0% |
| !!! | ATAGTTTTATTTTTTTTGAG+GGG | + | chr3.4:97042524-97042543 | MS.gene064675:intron | 15.0% |
| !!! | ATTTTTTAAGAAAAGTTGTT+AGG | + | chr3.4:97042127-97042146 | MS.gene064675:intron | 15.0% |
| !!! | CTGATTATATTTTTCAATAA+AGG | + | chr3.4:97042591-97042610 | MS.gene064675:intron | 15.0% |
| !!! | TTTAATTTGAGAGTTTTTAA+GGG | - | chr3.4:97042714-97042733 | None:intergenic | 15.0% |
| !!! | TTTTTTAAGAAAAGTTGTTA+GGG | + | chr3.4:97042128-97042147 | MS.gene064675:intron | 15.0% |
| !! | AAAAATAGTTAGTACTACTA+CGG | + | chr3.4:97042552-97042571 | MS.gene064675:intron | 20.0% |
| !! | AAAATGTGAAAAAGAAAAAG+GGG | - | chr3.4:97042112-97042131 | None:intergenic | 20.0% |
| !! | AAATTCATTAAAAAAGTGGA+AGG | - | chr3.4:97041536-97041555 | None:intergenic | 20.0% |
| !! | AATGGTAATTAAATTATTGC+AGG | + | chr3.4:97041689-97041708 | MS.gene064675:intron | 20.0% |
| !! | ATATTGTGTTTGTATATCAT+TGG | + | chr3.4:97041647-97041666 | MS.gene064675:intron | 20.0% |
| !! | ATGCATCTAGTAATTTAATA+AGG | + | chr3.4:97042267-97042286 | MS.gene064675:intron | 20.0% |
| !! | ATGGTAATTAAATTATTGCA+GGG | + | chr3.4:97041690-97041709 | MS.gene064675:intron | 20.0% |
| !! | CTCAATAATTTCAAAACTTT+AGG | + | chr3.4:97041477-97041496 | MS.gene064675:CDS | 20.0% |
| !! | CTTTACATATTATCAATTAG+GGG | + | chr3.4:97042221-97042240 | MS.gene064675:intron | 20.0% |
| !! | GACTTTACATATTATCAATT+AGG | + | chr3.4:97042219-97042238 | MS.gene064675:intron | 20.0% |
| !! | TAATAAGGAGTTTACATTTA+GGG | + | chr3.4:97042282-97042301 | MS.gene064675:intron | 20.0% |
| !! | TGAATGAATAAATGTTCTTT+GGG | - | chr3.4:97043297-97043316 | None:intergenic | 20.0% |
| !! | TTAATAAGGAGTTTACATTT+AGG | + | chr3.4:97042281-97042300 | MS.gene064675:intron | 20.0% |
| !! | TTGAATGAATAAATGTTCTT+TGG | - | chr3.4:97043298-97043317 | None:intergenic | 20.0% |
| !! | TTTAATACACATACAAACAA+AGG | - | chr3.4:97042196-97042215 | None:intergenic | 20.0% |
| !!! | CTAAAGTTTTGAAATTATTG+AGG | - | chr3.4:97041479-97041498 | None:intergenic | 20.0% |
| !!! | GTTTAATTTGAGAGTTTTTA+AGG | - | chr3.4:97042715-97042734 | None:intergenic | 20.0% |
| !!! | TCATTTTCTTAAATCATTAC+CGG | - | chr3.4:97043052-97043071 | None:intergenic | 20.0% |
| ! | AATGAATAAATGTTCTTTGG+GGG | - | chr3.4:97043295-97043314 | None:intergenic | 25.0% |
| ! | AGTATATGAAAATGTTTGCA+AGG | - | chr3.4:97042465-97042484 | None:intergenic | 25.0% |
| ! | CATTTGGATTATGACTAAAT+GGG | - | chr3.4:97041973-97041992 | None:intergenic | 25.0% |
| ! | GAATGAATAAATGTTCTTTG+GGG | - | chr3.4:97043296-97043315 | None:intergenic | 25.0% |
| ! | GGGACAAATATAAAATCAAA+TGG | + | chr3.4:97042302-97042321 | MS.gene064675:intron | 25.0% |
| ! | TATTTCTTGTATATGTACAG+CGG | + | chr3.4:97043183-97043202 | MS.gene064675:intron | 25.0% |
| ! | TCATTTGGATTATGACTAAA+TGG | - | chr3.4:97041974-97041993 | None:intergenic | 25.0% |
| ! | TGGTAATTAAATTATTGCAG+GGG | + | chr3.4:97041691-97041710 | MS.gene064675:intron | 25.0% |
| !! | AAAAGCAAGATTTTGTTCAT+CGG | + | chr3.4:97041342-97041361 | MS.gene064675:CDS | 25.0% |
| AAACCAGAAAAAAGGGTAAA+AGG | - | chr3.4:97041912-97041931 | None:intergenic | 30.0% | |
| AAACTTCTCAAGGATATTCA+AGG | + | chr3.4:97043385-97043404 | MS.gene064675:CDS | 30.0% | |
| AAAGACAAAGTCGTCATATA+TGG | + | chr3.4:97042987-97043006 | MS.gene064675:CDS | 30.0% | |
| AAGGTAACAAACTAACATGT+TGG | + | chr3.4:97043024-97043043 | MS.gene064675:intron | 30.0% | |
| AGAATCTTATTCAATGTCCT+TGG | - | chr3.4:97043262-97043281 | None:intergenic | 30.0% | |
| GAGTTAATATTTCCAGCTAA+AGG | - | chr3.4:97041623-97041642 | None:intergenic | 30.0% | |
| GGTAATTAAATTATTGCAGG+GGG | + | chr3.4:97041692-97041711 | MS.gene064675:intron | 30.0% | |
| TCGTTTGAACACAAAGTTAA+AGG | - | chr3.4:97042677-97042696 | None:intergenic | 30.0% | |
| TTCATTAAAAAAGTGGAAGG+AGG | - | chr3.4:97041533-97041552 | None:intergenic | 30.0% | |
| ! | TATATGACGACTTTGTCTTT+TGG | - | chr3.4:97042987-97043006 | None:intergenic | 30.0% |
| ! | TATATTCCCTTTTATTGCAG+AGG | + | chr3.4:97043474-97043493 | MS.gene064675:intron | 30.0% |
| !! | ACATGTTAGTTTGTTACCTT+TGG | - | chr3.4:97043024-97043043 | None:intergenic | 30.0% |
| !! | CATGTTAGTTTGTTACCTTT+GGG | - | chr3.4:97043023-97043042 | None:intergenic | 30.0% |
| !! | TTTGAGAGTTTTTAAGGGTT+CGG | - | chr3.4:97042709-97042728 | None:intergenic | 30.0% |
| !!! | AGATTTTTTCCTTCGGAATT+TGG | + | chr3.4:97042783-97042802 | MS.gene064675:CDS | 30.0% |
| !!! | GATTTTTTCCTTCGGAATTT+GGG | + | chr3.4:97042784-97042803 | MS.gene064675:CDS | 30.0% |
| !!! | TGGAAGAAAAGTTTTTTCGA+CGG | - | chr3.4:97043359-97043378 | None:intergenic | 30.0% |
| !!! | TTTTACCCTTTTTTCTGGTT+TGG | + | chr3.4:97041911-97041930 | MS.gene064675:intron | 30.0% |
| AAGAAGCCAAACCAGAAAAA+AGG | - | chr3.4:97041920-97041939 | None:intergenic | 35.0% | |
| AGAAGCCAAACCAGAAAAAA+GGG | - | chr3.4:97041919-97041938 | None:intergenic | 35.0% | |
| AGGAGGAATATATTACGTAC+AGG | - | chr3.4:97041516-97041535 | None:intergenic | 35.0% | |
| ATCGATAATACCACGTTGAT+TGG | - | chr3.4:97043508-97043527 | None:intergenic | 35.0% | |
| CAAAACTTTAGGCGTCAATT+TGG | + | chr3.4:97041488-97041507 | MS.gene064675:CDS | 35.0% | |
| CAAATTAAACTCTTGCTGGT+AGG | + | chr3.4:97042725-97042744 | MS.gene064675:intron | 35.0% | |
| CAGCAAAATCTGCATTTGAA+GGG | + | chr3.4:97042838-97042857 | MS.gene064675:CDS | 35.0% | |
| CTCTCAAATTAAACTCTTGC+TGG | + | chr3.4:97042721-97042740 | MS.gene064675:intron | 35.0% | |
| GAAGATTATCGCTGCAATTA+AGG | + | chr3.4:97041806-97041825 | MS.gene064675:CDS | 35.0% | |
| GGAGGAATATATTACGTACA+GGG | - | chr3.4:97041515-97041534 | None:intergenic | 35.0% | |
| TCTGTATGATCATGAGAACT+TGG | + | chr3.4:97041716-97041735 | MS.gene064675:CDS | 35.0% | |
| TTCAACAAGGAAGATGACAT+TGG | + | chr3.4:97043208-97043227 | MS.gene064675:CDS | 35.0% | |
| TTGCTAGACACATATGTGTA+GGG | - | chr3.4:97042903-97042922 | None:intergenic | 35.0% | |
| ! | AATACCACGTTGATTGGAAT+AGG | - | chr3.4:97043502-97043521 | None:intergenic | 35.0% |
| ! | AGAAAAAGGGGTATACATAC+AGG | - | chr3.4:97042100-97042119 | None:intergenic | 35.0% |
| ! | CGAAAAAACTTTTCTTCCAG+AGG | + | chr3.4:97043360-97043379 | MS.gene064675:CDS | 35.0% |
| ! | GAAAAAGGGGTATACATACA+GGG | - | chr3.4:97042099-97042118 | None:intergenic | 35.0% |
| ! | TATCAATTAGGGGCATGTTT+AGG | + | chr3.4:97042231-97042250 | MS.gene064675:intron | 35.0% |
| ! | TTCAATAGCACGTCGAATTT+TGG | - | chr3.4:97042868-97042887 | None:intergenic | 35.0% |
| ! | TTGTGATTGAGCCATCTTTT+GGG | + | chr3.4:97043566-97043585 | MS.gene064675:CDS | 35.0% |
| ! | TTTGTGATTGAGCCATCTTT+TGG | + | chr3.4:97043565-97043584 | MS.gene064675:CDS | 35.0% |
| !! | ATTATTGAGGAGATTAGCCT+TGG | - | chr3.4:97041466-97041485 | None:intergenic | 35.0% |
| !! | GCTGGTAGGAATTTTAACAT+TGG | + | chr3.4:97042739-97042758 | MS.gene064675:intron | 35.0% |
| AAAGTCGTCATATATGGCGA+TGG | + | chr3.4:97042993-97043012 | MS.gene064675:CDS | 40.0% | |
| AAAGTGGACAGTCACAATCA+TGG | + | chr3.4:97042401-97042420 | MS.gene064675:intron | 40.0% | |
| AACATTCACCATTAGAGCTG+TGG | + | chr3.4:97043231-97043250 | MS.gene064675:CDS | 40.0% | |
| ACAAACTAACATGTTGGCAC+CGG | + | chr3.4:97043030-97043049 | MS.gene064675:intron | 40.0% | |
| ACAGTTGTGTACTTGACATC+TGG | - | chr3.4:97043613-97043632 | None:intergenic | 40.0% | |
| AGATGTCAAGTACACAACTG+TGG | + | chr3.4:97043612-97043631 | MS.gene064675:CDS | 40.0% | |
| AGTAATCAAGCAGGTAGATG+TGG | + | chr3.4:97041743-97041762 | MS.gene064675:CDS | 40.0% | |
| ATAGGAGCCTCTGCAATAAA+AGG | - | chr3.4:97043484-97043503 | None:intergenic | 40.0% | |
| CAGTTGTGTACTTGACATCT+GGG | - | chr3.4:97043612-97043631 | None:intergenic | 40.0% | |
| CCAGCAAAATCTGCATTTGA+AGG | + | chr3.4:97042837-97042856 | MS.gene064675:CDS | 40.0% | |
| CTTGGTGAAAGTAATCAAGC+AGG | + | chr3.4:97041734-97041753 | MS.gene064675:CDS | 40.0% | |
| GATTATCGCTGCAATTAAGG+AGG | + | chr3.4:97041809-97041828 | MS.gene064675:CDS | 40.0% | |
| GGTAGATGTGGTCATATCTA+CGG | + | chr3.4:97041755-97041774 | MS.gene064675:CDS | 40.0% | |
| GTTGCTAGACACATATGTGT+AGG | - | chr3.4:97042904-97042923 | None:intergenic | 40.0% | |
| TAGGAGCCTCTGCAATAAAA+GGG | - | chr3.4:97043483-97043502 | None:intergenic | 40.0% | |
| TCATGTACACCACACAAAAG+TGG | + | chr3.4:97042385-97042404 | MS.gene064675:intron | 40.0% | |
| TCCAGAGGATAAACTTCTCA+AGG | + | chr3.4:97043375-97043394 | MS.gene064675:CDS | 40.0% | |
| TCCGAAGGAAAAAATCTCTG+CGG | - | chr3.4:97042780-97042799 | None:intergenic | 40.0% | |
| TCCTTGAGAAGTTTATCCTC+TGG | - | chr3.4:97043379-97043398 | None:intergenic | 40.0% | |
| TGTCTAGCAACTACTTTGCT+GGG | + | chr3.4:97042913-97042932 | MS.gene064675:CDS | 40.0% | |
| TGTGTCAAAGTCCAAATTGC+CGG | - | chr3.4:97042439-97042458 | None:intergenic | 40.0% | |
| ! | AATTCGACGTGCTATTGAAG+CGG | + | chr3.4:97042869-97042888 | MS.gene064675:CDS | 40.0% |
| ! | AGCAAGATTTTGTTCATCGG+AGG | + | chr3.4:97041345-97041364 | MS.gene064675:CDS | 40.0% |
| ! | ATGACGACTTTGTCTTTTGG+AGG | - | chr3.4:97042984-97043003 | None:intergenic | 40.0% |
| ! | ATTTTGTTCATCGGAGGAAC+AGG | + | chr3.4:97041351-97041370 | MS.gene064675:CDS | 40.0% |
| ! | CCTTCAAATGCAGATTTTGC+TGG | - | chr3.4:97042840-97042859 | None:intergenic | 40.0% |
| ! | GTGCCTTTTACCCTTTTTTC+TGG | + | chr3.4:97041906-97041925 | MS.gene064675:intron | 40.0% |
| ! | TGTGATTGAGCCATCTTTTG+GGG | + | chr3.4:97043567-97043586 | MS.gene064675:CDS | 40.0% |
| !!! | TCCGCAGAGATTTTTTCCTT+CGG | + | chr3.4:97042776-97042795 | MS.gene064675:intron | 40.0% |
| ACAGAGAGTGATCCTTTAGC+TGG | + | chr3.4:97041608-97041627 | MS.gene064675:intron | 45.0% | |
| ACGTCATTCCCAAATTCCGA+AGG | - | chr3.4:97042795-97042814 | None:intergenic | 45.0% | |
| ATCGGAGGAACAGGTTACAT+CGG | + | chr3.4:97041360-97041379 | MS.gene064675:CDS | 45.0% | |
| ATGTACAGCGGTGTTCAACA+AGG | + | chr3.4:97043195-97043214 | MS.gene064675:intron | 45.0% | |
| CCTTGTGGGAGAAGAAGATT+GGG | + | chr3.4:97043329-97043348 | MS.gene064675:CDS | 45.0% | |
| GATGTGGTCATATCTACGGT+AGG | + | chr3.4:97041759-97041778 | MS.gene064675:CDS | 45.0% | |
| GGTATTATCGATCCACCACT+CGG | + | chr3.4:97043516-97043535 | MS.gene064675:CDS | 45.0% | |
| GTAGAAGCAAGTGCAAAAGC+TGG | + | chr3.4:97041393-97041412 | MS.gene064675:CDS | 45.0% | |
| GTGTCTAGCAACTACTTTGC+TGG | + | chr3.4:97042912-97042931 | MS.gene064675:CDS | 45.0% | |
| TAAGCCTCAACCCCAAAAGA+TGG | - | chr3.4:97043580-97043599 | None:intergenic | 45.0% | |
| TATGGCGATGGAAATCCCAA+AGG | + | chr3.4:97043005-97043024 | MS.gene064675:CDS | 45.0% | |
| TCACGGACCAATGCAAAAGT+GGG | - | chr3.4:97041423-97041442 | None:intergenic | 45.0% | |
| TGGACAGTCACAATCATGGT+GGG | + | chr3.4:97042405-97042424 | MS.gene064675:intron | 45.0% | |
| TGTCAAGTACACAACTGTGG+AGG | + | chr3.4:97043615-97043634 | MS.gene064675:CDS | 45.0% | |
| TTAGAGCTGTGGATGATCCA+AGG | + | chr3.4:97043242-97043261 | MS.gene064675:CDS | 45.0% | |
| TTCACGGACCAATGCAAAAG+TGG | - | chr3.4:97041424-97041443 | None:intergenic | 45.0% | |
| ! | AAGGGGTATACATACAGGGA+CGG | - | chr3.4:97042095-97042114 | None:intergenic | 45.0% |
| ! | ATTTTGCTGGATCTACCGCA+TGG | - | chr3.4:97042827-97042846 | None:intergenic | 45.0% |
| ! | TAAGGAGGCTGGTAACGTTA+AGG | + | chr3.4:97041824-97041843 | MS.gene064675:CDS | 45.0% |
| ! | TGGATCATCCACAGCTCTAA+TGG | - | chr3.4:97043242-97043261 | None:intergenic | 45.0% |
| !! | ACGACTTTGTCTTTTGGAGG+AGG | - | chr3.4:97042981-97043000 | None:intergenic | 45.0% |
| !! | ACTTTGTCTTTTGGAGGAGG+TGG | - | chr3.4:97042978-97042997 | None:intergenic | 45.0% |
| !! | CTTTGTCTTTTGGAGGAGGT+GGG | - | chr3.4:97042977-97042996 | None:intergenic | 45.0% |
| !! | TGGACATCCCACTTTTGCAT+TGG | + | chr3.4:97041413-97041432 | MS.gene064675:CDS | 45.0% |
| !! | TGTGACTGTCCACTTTTGTG+TGG | - | chr3.4:97042397-97042416 | None:intergenic | 45.0% |
| !! | TTTGTCTTTTGGAGGAGGTG+GGG | - | chr3.4:97042976-97042995 | None:intergenic | 45.0% |
| !! | ATAAATAAATATTTATCATT+TGG | - | chr3.4:97041989-97042008 | None:intergenic | 5.0% |
| !!! | ATTTAAATATTTTTTATTTG+AGG | + | chr3.4:97042341-97042360 | MS.gene064675:intron | 5.0% |
| ATCGCTGCAATTAAGGAGGC+TGG | + | chr3.4:97041813-97041832 | MS.gene064675:CDS | 50.0% | |
| CACCTTTCACAAACACCGAG+TGG | - | chr3.4:97043534-97043553 | None:intergenic | 50.0% | |
| CCCAATCTTCTTCTCCCACA+AGG | - | chr3.4:97043332-97043351 | None:intergenic | 50.0% | |
| CTTGATCCTCAATCAGAGCG+TGG | - | chr3.4:97041785-97041804 | None:intergenic | 50.0% | |
| CTTTCACAAACACCGAGTGG+TGG | - | chr3.4:97043531-97043550 | None:intergenic | 50.0% | |
| GCCTTGTGGGAGAAGAAGAT+TGG | + | chr3.4:97043328-97043347 | MS.gene064675:CDS | 50.0% | |
| GGCTCCTATTCCAATCAACG+TGG | + | chr3.4:97043495-97043514 | MS.gene064675:CDS | 50.0% | |
| GGTATACATACAGGGACGGA+GGG | - | chr3.4:97042091-97042110 | None:intergenic | 50.0% | |
| GTGGACAGTCACAATCATGG+TGG | + | chr3.4:97042404-97042423 | MS.gene064675:intron | 50.0% | |
| TGACGTTGATCGTGTCCATG+CGG | + | chr3.4:97042809-97042828 | MS.gene064675:CDS | 50.0% | |
| TGTCCTGGCTGAGCTAATGT+GGG | - | chr3.4:97042948-97042967 | None:intergenic | 50.0% | |
| TTGTCCTGGCTGAGCTAATG+TGG | - | chr3.4:97042949-97042968 | None:intergenic | 50.0% | |
| ! | AGTCACAATCATGGTGGGAG+TGG | + | chr3.4:97042410-97042429 | MS.gene064675:intron | 50.0% |
| ! | GTCACAATCATGGTGGGAGT+GGG | + | chr3.4:97042411-97042430 | MS.gene064675:intron | 50.0% |
| ! | TCAACGAGCTTGTAGCCTTG+TGG | + | chr3.4:97043314-97043333 | MS.gene064675:CDS | 50.0% |
| !! | CAACGAGCTTGTAGCCTTGT+GGG | + | chr3.4:97043315-97043334 | MS.gene064675:CDS | 50.0% |
| !! | CACCACTCGGTGTTTGTGAA+AGG | + | chr3.4:97043529-97043548 | MS.gene064675:CDS | 50.0% |
| !! | TTGAGGAGATTAGCCTTGGC+AGG | - | chr3.4:97041462-97041481 | None:intergenic | 50.0% |
| !!! | TGAGCCATCTTTTGGGGTTG+AGG | + | chr3.4:97043573-97043592 | MS.gene064675:CDS | 50.0% |
| GGGTATACATACAGGGACGG+AGG | - | chr3.4:97042092-97042111 | None:intergenic | 55.0% | |
| GTCCTGGCTGAGCTAATGTG+GGG | - | chr3.4:97042947-97042966 | None:intergenic | 55.0% | |
| ! | ATCATGGTGGGAGTGGGATC+CGG | + | chr3.4:97042417-97042436 | MS.gene064675:intron | 55.0% |
| ! | CGACGTGCTATTGAAGCGGA+AGG | + | chr3.4:97042873-97042892 | MS.gene064675:CDS | 55.0% |
| ! | GATCAGCGAGGGTGGATTCA+CGG | - | chr3.4:97041440-97041459 | None:intergenic | 55.0% |
| AGCCTTGGCAGGATCAGCGA+GGG | - | chr3.4:97041451-97041470 | None:intergenic | 60.0% | |
| CTCCCCACATTAGCTCAGCC+AGG | + | chr3.4:97042942-97042961 | MS.gene064675:CDS | 60.0% | |
| GGGAGTGGGATCCGGCAATT+TGG | + | chr3.4:97042425-97042444 | MS.gene064675:intron | 60.0% | |
| GGTAGGCCACGCTCTGATTG+AGG | + | chr3.4:97041776-97041795 | MS.gene064675:CDS | 60.0% | |
| ! | TAGCCTTGGCAGGATCAGCG+AGG | - | chr3.4:97041452-97041471 | None:intergenic | 60.0% |
| CACCCTCGCTGATCCTGCCA+AGG | + | chr3.4:97041446-97041465 | MS.gene064675:CDS | 65.0% | |
| CTTGGCAGGATCAGCGAGGG+TGG | - | chr3.4:97041448-97041467 | None:intergenic | 65.0% | |
| GGAGGTGGGGCGAATTGTCC+TGG | - | chr3.4:97042963-97042982 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 97041333 | 97043660 | 97041333 | ID=MS.gene064675 |
| chr3.4 | mRNA | 97041333 | 97043660 | 97041333 | ID=MS.gene064675.t1;Parent=MS.gene064675 |
| chr3.4 | exon | 97041333 | 97041515 | 97041333 | ID=MS.gene064675.t1.exon1;Parent=MS.gene064675.t1 |
| chr3.4 | CDS | 97041333 | 97041515 | 97041333 | ID=cds.MS.gene064675.t1;Parent=MS.gene064675.t1 |
| chr3.4 | exon | 97041711 | 97041845 | 97041711 | ID=MS.gene064675.t1.exon2;Parent=MS.gene064675.t1 |
| chr3.4 | CDS | 97041711 | 97041845 | 97041711 | ID=cds.MS.gene064675.t1;Parent=MS.gene064675.t1 |
| chr3.4 | exon | 97042783 | 97043026 | 97042783 | ID=MS.gene064675.t1.exon3;Parent=MS.gene064675.t1 |
| chr3.4 | CDS | 97042783 | 97043026 | 97042783 | ID=cds.MS.gene064675.t1;Parent=MS.gene064675.t1 |
| chr3.4 | exon | 97043203 | 97043406 | 97043203 | ID=MS.gene064675.t1.exon4;Parent=MS.gene064675.t1 |
| chr3.4 | CDS | 97043203 | 97043406 | 97043203 | ID=cds.MS.gene064675.t1;Parent=MS.gene064675.t1 |
| chr3.4 | exon | 97043494 | 97043660 | 97043494 | ID=MS.gene064675.t1.exon5;Parent=MS.gene064675.t1 |
| chr3.4 | CDS | 97043494 | 97043660 | 97043494 | ID=cds.MS.gene064675.t1;Parent=MS.gene064675.t1 |
| Gene Sequence |
| Protein sequence |
