Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064719.t1 | XP_013462189.1 | 91.5 | 294 | 8 | 2 | 1 | 277 | 1 | 294 | 1.00E-152 | 549.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064719.t1 | Q9FXH7 | 41.8 | 347 | 119 | 16 | 1 | 271 | 1 | 340 | 3.4e-51 | 203.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064719.t1 | A0A072V2G0 | 91.5 | 294 | 8 | 2 | 1 | 277 | 1 | 294 | 7.5e-153 | 549.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene064719.t1 | TF | SRS |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050563 | MS.gene064719 | 0.813224 | 2.85E-51 | -1.69E-46 |
| MS.gene053383 | MS.gene064719 | 0.810997 | 8.72E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064719.t1 | MTR_3g112510 | 90.136 | 294 | 12 | 2 | 1 | 277 | 1 | 294 | 0.0 | 516 |
| MS.gene064719.t1 | MTR_8g076620 | 53.191 | 235 | 85 | 8 | 57 | 271 | 97 | 326 | 1.88e-64 | 205 |
| MS.gene064719.t1 | MTR_5g021130 | 40.673 | 327 | 136 | 14 | 1 | 274 | 1 | 322 | 9.51e-54 | 177 |
| MS.gene064719.t1 | MTR_4g071110 | 49.650 | 143 | 64 | 4 | 81 | 221 | 14 | 150 | 3.64e-39 | 137 |
| MS.gene064719.t1 | MTR_1g023230 | 48.241 | 199 | 48 | 7 | 25 | 169 | 32 | 229 | 1.27e-37 | 133 |
| MS.gene064719.t1 | MTR_5g089750 | 44.242 | 165 | 47 | 6 | 84 | 212 | 249 | 404 | 1.01e-30 | 119 |
| MS.gene064719.t1 | MTR_3g014660 | 40.127 | 157 | 59 | 6 | 84 | 209 | 134 | 286 | 1.31e-26 | 106 |
| MS.gene064719.t1 | MTR_8g039110 | 35.266 | 207 | 87 | 7 | 84 | 250 | 124 | 323 | 1.98e-26 | 105 |
| MS.gene064719.t1 | MTR_0363s0040 | 75.556 | 45 | 11 | 0 | 84 | 128 | 124 | 168 | 3.21e-19 | 84.7 |
| MS.gene064719.t1 | MTR_0105s0070 | 63.636 | 33 | 12 | 0 | 86 | 118 | 44 | 76 | 2.05e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064719.t1 | AT1G19790 | 43.228 | 347 | 114 | 17 | 1 | 271 | 1 | 340 | 3.52e-68 | 215 |
| MS.gene064719.t1 | AT1G19790 | 43.228 | 347 | 114 | 17 | 1 | 271 | 1 | 340 | 3.52e-68 | 215 |
| MS.gene064719.t1 | AT1G75520 | 42.577 | 357 | 107 | 17 | 1 | 273 | 1 | 343 | 3.46e-63 | 202 |
| MS.gene064719.t1 | AT5G66350 | 50.679 | 221 | 62 | 10 | 84 | 271 | 120 | 326 | 1.15e-54 | 180 |
| MS.gene064719.t1 | AT5G66350 | 50.000 | 216 | 62 | 9 | 84 | 266 | 120 | 322 | 3.51e-53 | 176 |
| MS.gene064719.t1 | AT5G66350 | 50.233 | 215 | 61 | 9 | 84 | 265 | 120 | 321 | 4.74e-53 | 176 |
| MS.gene064719.t1 | AT3G51060 | 49.780 | 227 | 74 | 10 | 82 | 271 | 142 | 365 | 6.73e-52 | 174 |
| MS.gene064719.t1 | AT4G36260 | 52.830 | 159 | 48 | 4 | 78 | 210 | 88 | 245 | 1.29e-43 | 151 |
| MS.gene064719.t1 | AT2G18120 | 41.629 | 221 | 101 | 7 | 1 | 212 | 6 | 207 | 1.80e-43 | 147 |
| MS.gene064719.t1 | AT2G18120 | 41.096 | 219 | 103 | 7 | 1 | 212 | 6 | 205 | 8.01e-42 | 143 |
| MS.gene064719.t1 | AT2G21400 | 42.000 | 200 | 81 | 8 | 75 | 270 | 1 | 169 | 5.51e-40 | 137 |
| MS.gene064719.t1 | AT2G21400 | 42.784 | 194 | 76 | 8 | 81 | 270 | 6 | 168 | 8.97e-40 | 137 |
| MS.gene064719.t1 | AT2G21400 | 42.574 | 202 | 92 | 9 | 75 | 270 | 1 | 184 | 5.39e-39 | 135 |
| MS.gene064719.t1 | AT2G21400 | 43.367 | 196 | 87 | 9 | 81 | 270 | 6 | 183 | 8.86e-39 | 134 |
| MS.gene064719.t1 | AT5G12330 | 46.250 | 160 | 50 | 7 | 84 | 209 | 112 | 269 | 1.93e-29 | 114 |
| MS.gene064719.t1 | AT5G12330 | 46.250 | 160 | 50 | 7 | 84 | 209 | 112 | 269 | 1.93e-29 | 114 |
| MS.gene064719.t1 | AT5G12330 | 46.250 | 160 | 50 | 7 | 84 | 209 | 199 | 356 | 2.00e-29 | 115 |
| MS.gene064719.t1 | AT5G33210 | 65.278 | 72 | 23 | 2 | 82 | 151 | 15 | 86 | 4.37e-25 | 96.7 |
| MS.gene064719.t1 | AT5G33210 | 65.278 | 72 | 23 | 2 | 82 | 151 | 50 | 121 | 2.71e-24 | 96.7 |
| MS.gene064719.t1 | AT3G54430 | 37.500 | 136 | 77 | 3 | 80 | 209 | 37 | 170 | 3.98e-23 | 93.6 |
| MS.gene064719.t1 | AT5G12330 | 82.609 | 46 | 8 | 0 | 84 | 129 | 112 | 157 | 8.77e-21 | 88.6 |
Find 68 sgRNAs with CRISPR-Local
Find 102 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACACACCGTATTAATTAATT+AGG | 0.252373 | 3.4:+97507142 | None:intergenic |
| GCACCTATTGAAGGTTCTTC+TGG | 0.278915 | 3.4:-97507316 | MS.gene064719:CDS |
| TATTAATTAATTAGGATGTT+GGG | 0.323138 | 3.4:+97507150 | None:intergenic |
| GCAATACTGGTGTAAAGATT+TGG | 0.352201 | 3.4:+97507337 | None:intergenic |
| AGCTCCGCTCAATGCTTTCA+TGG | 0.372783 | 3.4:-97507197 | MS.gene064719:CDS |
| GATGAGTGTGAAAGAAGATT+TGG | 0.383103 | 3.4:-97508365 | MS.gene064719:CDS |
| ACCTTCAATAGGTGCAATAC+TGG | 0.385502 | 3.4:+97507324 | None:intergenic |
| TTGAACATTTACAATGCGTT+TGG | 0.402855 | 3.4:-97508425 | MS.gene064719:CDS |
| CCGTTTCGTCGTCGAGATCA+TGG | 0.410173 | 3.4:-97508158 | MS.gene064719:CDS |
| AGAGATGTTGTTGTCGTTCA+CGG | 0.410405 | 3.4:+97508189 | None:intergenic |
| CGTTCACGGCGTTTAGCAGC+TGG | 0.414213 | 3.4:+97508203 | None:intergenic |
| CCACCAGAGGTGAGTTCTCC+AGG | 0.416959 | 3.4:-97507484 | MS.gene064719:CDS |
| TGCTACTCAGGGTTGGAGTT+GGG | 0.418590 | 3.4:-97507514 | MS.gene064719:intron |
| ACAACAAAGGGTTAGAGATA+TGG | 0.425274 | 3.4:-97508460 | MS.gene064719:CDS |
| GTATTAATTAATTAGGATGT+TGG | 0.434180 | 3.4:+97507149 | None:intergenic |
| ACCAGTATTGCACCTATTGA+AGG | 0.434447 | 3.4:-97507325 | MS.gene064719:CDS |
| CTGCTACTCAGGGTTGGAGT+TGG | 0.435308 | 3.4:-97507515 | MS.gene064719:intron |
| AAACACATGTTAAGAGTACT+TGG | 0.440077 | 3.4:-97508229 | MS.gene064719:CDS |
| ATTGAGCGGAGCTGAGTAAA+GGG | 0.455523 | 3.4:+97507207 | None:intergenic |
| GTTCTCCAGGAGTAACCTTT+CGG | 0.458523 | 3.4:-97507471 | MS.gene064719:CDS |
| AAAGGAATTCTCTATGATCA+AGG | 0.458943 | 3.4:-97507364 | MS.gene064719:CDS |
| TGTTCAATGCGCGTATCAAA+CGG | 0.468547 | 3.4:-97507413 | MS.gene064719:CDS |
| CTCAATGCTTTCATGGCAGC+TGG | 0.470851 | 3.4:-97507190 | MS.gene064719:CDS |
| TACGCGCATTGAACATGATC+TGG | 0.473149 | 3.4:+97507421 | None:intergenic |
| CCACCAGAAGAACCTTCAAT+AGG | 0.475713 | 3.4:+97507313 | None:intergenic |
| ATTTACAATGCGTTTGGAGC+GGG | 0.476042 | 3.4:-97508419 | MS.gene064719:CDS |
| ATTAATTAATTAGGATGTTG+GGG | 0.494474 | 3.4:+97507151 | None:intergenic |
| CCATGATCTCGACGACGAAA+CGG | 0.500595 | 3.4:+97508158 | None:intergenic |
| TGAGTACTGCAACAAATGGC+TGG | 0.507692 | 3.4:-97508578 | None:intergenic |
| AGGAGATCTATAACAACAAA+GGG | 0.518436 | 3.4:-97508472 | MS.gene064719:CDS |
| ACACACCGAAAGGTTACTCC+TGG | 0.521457 | 3.4:+97507466 | None:intergenic |
| CCTATTGAAGGTTCTTCTGG+TGG | 0.522897 | 3.4:-97507313 | MS.gene064719:CDS |
| TATCAAACGGCTGTGAACAT+AGG | 0.523500 | 3.4:-97507400 | MS.gene064719:CDS |
| CATTGAGCGGAGCTGAGTAA+AGG | 0.525999 | 3.4:+97507206 | None:intergenic |
| TAGTGGAGGAATGAATTGTC+AGG | 0.528718 | 3.4:-97508330 | MS.gene064719:CDS |
| AAAGAAGATTTGGTATAATG+AGG | 0.534847 | 3.4:-97508355 | MS.gene064719:CDS |
| GAACTTGTTGTAAGAGTCGA+GGG | 0.537704 | 3.4:-97508262 | MS.gene064719:CDS |
| ATTGAAGGTTCTTCTGGTGG+AGG | 0.544276 | 3.4:-97507310 | MS.gene064719:CDS |
| ACTCCTGGAGAACTCACCTC+TGG | 0.545749 | 3.4:+97507481 | None:intergenic |
| CGACACACAGAAATTAATCA+AGG | 0.547183 | 3.4:-97508122 | MS.gene064719:intron |
| CCTGGAGAACTCACCTCTGG+TGG | 0.547209 | 3.4:+97507484 | None:intergenic |
| AGTAAAGGGAAGGGTCGAAT+GGG | 0.547906 | 3.4:+97507221 | None:intergenic |
| GAGTAAAGGGAAGGGTCGAA+TGG | 0.551923 | 3.4:+97507220 | None:intergenic |
| GTGTGTGAGAGTGAGTTCAT+TGG | 0.567712 | 3.4:-97507449 | MS.gene064719:CDS |
| CAAACGGCTGTGAACATAGG+AGG | 0.569957 | 3.4:-97507397 | MS.gene064719:CDS |
| AGCGGAGCTGAGTAAAGGGA+AGG | 0.586546 | 3.4:+97507211 | None:intergenic |
| CATTTACAATGCGTTTGGAG+CGG | 0.587822 | 3.4:-97508420 | MS.gene064719:CDS |
| TTTGGTATAATGAGGCGTAG+TGG | 0.591379 | 3.4:-97508347 | MS.gene064719:CDS |
| ATACTGGTGTAAAGATTTGG+AGG | 0.592879 | 3.4:+97507340 | None:intergenic |
| GAGGAGATCTATAACAACAA+AGG | 0.594462 | 3.4:-97508473 | MS.gene064719:CDS |
| AGAATTATTGTTAAGAAACG+AGG | 0.601425 | 3.4:-97508492 | MS.gene064719:CDS |
| AGAACTTGTTGTAAGAGTCG+AGG | 0.607559 | 3.4:-97508263 | MS.gene064719:CDS |
| GTCATGAAATCAAGTTGTTG+AGG | 0.608390 | 3.4:+97507277 | None:intergenic |
| AGGGTCGAATGGGATACCGC+TGG | 0.611002 | 3.4:+97507231 | None:intergenic |
| TAAATGTTCAAGCTTTGTTG+TGG | 0.618391 | 3.4:+97508437 | None:intergenic |
| CTGGAGAACTCACCTCTGGT+GGG | 0.629708 | 3.4:+97507485 | None:intergenic |
| ACTCACTCTCACACACCGAA+AGG | 0.630422 | 3.4:+97507456 | None:intergenic |
| GGTATAATGAGGCGTAGTGG+AGG | 0.645542 | 3.4:-97508344 | MS.gene064719:CDS |
| TTAATTAATTAGGATGTTGG+GGG | 0.645627 | 3.4:+97507152 | None:intergenic |
| AACACATGTTAAGAGTACTT+GGG | 0.648062 | 3.4:-97508228 | MS.gene064719:CDS |
| AAACGGCTGTGAACATAGGA+GGG | 0.648226 | 3.4:-97507396 | MS.gene064719:CDS |
| GAGTACTGCAACAAATGGCT+GGG | 0.651398 | 3.4:-97508577 | None:intergenic |
| GCGGAGCTGAGTAAAGGGAA+GGG | 0.669522 | 3.4:+97507212 | None:intergenic |
| GCAACTACAGCTACAACCAG+CGG | 0.670400 | 3.4:-97507247 | MS.gene064719:CDS |
| GTTGGGACAATTCCCACCAG+AGG | 0.679398 | 3.4:-97507497 | MS.gene064719:CDS |
| GCTGCCATGAAAGCATTGAG+CGG | 0.695869 | 3.4:+97507193 | None:intergenic |
| GTGAGAGTGAGTTCATTGGA+CGG | 0.712874 | 3.4:-97507445 | MS.gene064719:CDS |
| GGAATGAATTGTCAGGACTG+TGG | 0.748727 | 3.4:-97508323 | MS.gene064719:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTATAGTTATAATGA+TGG | - | chr3.4:97508111-97508130 | MS.gene064719:intron | 10.0% |
| !! | CTATACATACATACATATAT+AGG | - | chr3.4:97507710-97507729 | MS.gene064719:intron | 20.0% |
| !! | TTACAATAATTATATACCTG+TGG | + | chr3.4:97507661-97507680 | None:intergenic | 20.0% |
| !! | TTCATGATTGATGTATATAT+AGG | - | chr3.4:97507812-97507831 | MS.gene064719:intron | 20.0% |
| ! | AAAACAGTAACAAGTTATGA+TGG | + | chr3.4:97507992-97508011 | None:intergenic | 25.0% |
| ! | AAATCATCGTATACTAGTTA+AGG | + | chr3.4:97507931-97507950 | None:intergenic | 25.0% |
| ! | AATAATTATATACCTGTGGT+AGG | + | chr3.4:97507657-97507676 | None:intergenic | 25.0% |
| ! | AGAATTATTGTTAAGAAACG+AGG | - | chr3.4:97507227-97507246 | MS.gene064719:CDS | 25.0% |
| ! | ATAATTATATACCTGTGGTA+GGG | + | chr3.4:97507656-97507675 | None:intergenic | 25.0% |
| !! | AAAGAAGATTTGGTATAATG+AGG | - | chr3.4:97507364-97507383 | MS.gene064719:CDS | 25.0% |
| !! | AATGATGGAAATACTAATAG+AGG | - | chr3.4:97508126-97508145 | MS.gene064719:CDS | 25.0% |
| !! | GTATACGATGATTTTGAATA+TGG | - | chr3.4:97507937-97507956 | MS.gene064719:intron | 25.0% |
| !! | GTTTTACTTAAAAACAGTGA+TGG | + | chr3.4:97508046-97508065 | None:intergenic | 25.0% |
| AAAGGAATTCTCTATGATCA+AGG | - | chr3.4:97508355-97508374 | MS.gene064719:CDS | 30.0% | |
| AGGAGATCTATAACAACAAA+GGG | - | chr3.4:97507247-97507266 | MS.gene064719:CDS | 30.0% | |
| GTATAGCTGAAAATTCTTCA+TGG | + | chr3.4:97507839-97507858 | None:intergenic | 30.0% | |
| TATGTATGTATAGCTAGCTA+GGG | + | chr3.4:97507703-97507722 | None:intergenic | 30.0% | |
| TGACGAACTCATCAAATTAT+TGG | - | chr3.4:97508066-97508085 | MS.gene064719:intron | 30.0% | |
| TTGAACATTTACAATGCGTT+TGG | - | chr3.4:97507294-97507313 | MS.gene064719:CDS | 30.0% | |
| ! | TTAAAAACAGTGATGGAGAA+TGG | + | chr3.4:97508039-97508058 | None:intergenic | 30.0% |
| !! | AAACACATGTTAAGAGTACT+TGG | - | chr3.4:97507490-97507509 | MS.gene064719:CDS | 30.0% |
| !! | AACACATGTTAAGAGTACTT+GGG | - | chr3.4:97507491-97507510 | MS.gene064719:CDS | 30.0% |
| !! | GTTATTTTGTCTAGGTAGAA+AGG | - | chr3.4:97507164-97507183 | MS.gene064719:CDS | 30.0% |
| !! | TAAATGTTCAAGCTTTGTTG+TGG | + | chr3.4:97507285-97507304 | None:intergenic | 30.0% |
| !!! | CAATGCATTTTTTCATTAGC+AGG | + | chr3.4:97507875-97507894 | None:intergenic | 30.0% |
| AATGGAAAAGAAGATAGCGA+GGG | + | chr3.4:97508021-97508040 | None:intergenic | 35.0% | |
| ACAACAAAGGGTTAGAGATA+TGG | - | chr3.4:97507259-97507278 | MS.gene064719:CDS | 35.0% | |
| ATACTGGTGTAAAGATTTGG+AGG | + | chr3.4:97508382-97508401 | None:intergenic | 35.0% | |
| CGACACACAGAAATTAATCA+AGG | - | chr3.4:97507597-97507616 | MS.gene064719:intron | 35.0% | |
| GAGGAGATCTATAACAACAA+AGG | - | chr3.4:97507246-97507265 | MS.gene064719:CDS | 35.0% | |
| GATGAGTGTGAAAGAAGATT+TGG | - | chr3.4:97507354-97507373 | MS.gene064719:CDS | 35.0% | |
| GCAATACTGGTGTAAAGATT+TGG | + | chr3.4:97508385-97508404 | None:intergenic | 35.0% | |
| GTATGTATGTATAGCTAGCT+AGG | + | chr3.4:97507704-97507723 | None:intergenic | 35.0% | |
| GTTAAGGTCTAGTCATATAG+AGG | + | chr3.4:97507915-97507934 | None:intergenic | 35.0% | |
| ! | AATTTTCTTGACTGCTACTC+AGG | - | chr3.4:97508193-97508212 | MS.gene064719:CDS | 35.0% |
| ! | ATTTTCTTGACTGCTACTCA+GGG | - | chr3.4:97508194-97508213 | MS.gene064719:CDS | 35.0% |
| ! | GTCATGAAATCAAGTTGTTG+AGG | + | chr3.4:97508445-97508464 | None:intergenic | 35.0% |
| ACCAGTATTGCACCTATTGA+AGG | - | chr3.4:97508394-97508413 | MS.gene064719:CDS | 40.0% | |
| ACCTTCAATAGGTGCAATAC+TGG | + | chr3.4:97508398-97508417 | None:intergenic | 40.0% | |
| AGAGATGTTGTTGTCGTTCA+CGG | + | chr3.4:97507533-97507552 | None:intergenic | 40.0% | |
| CATTTACAATGCGTTTGGAG+CGG | - | chr3.4:97507299-97507318 | MS.gene064719:CDS | 40.0% | |
| GAATGGAAAAGAAGATAGCG+AGG | + | chr3.4:97508022-97508041 | None:intergenic | 40.0% | |
| TAGTGGAGGAATGAATTGTC+AGG | - | chr3.4:97507389-97507408 | MS.gene064719:CDS | 40.0% | |
| TATATACCTGTGGTAGGGAT+GGG | + | chr3.4:97507651-97507670 | None:intergenic | 40.0% | |
| TATCAAACGGCTGTGAACAT+AGG | - | chr3.4:97508319-97508338 | MS.gene064719:CDS | 40.0% | |
| TGTTCAATGCGCGTATCAAA+CGG | - | chr3.4:97508306-97508325 | MS.gene064719:CDS | 40.0% | |
| TTATATACCTGTGGTAGGGA+TGG | + | chr3.4:97507652-97507671 | None:intergenic | 40.0% | |
| TTTGAATATGGAACCCCACT+TGG | - | chr3.4:97507949-97507968 | MS.gene064719:intron | 40.0% | |
| TTTGGTATAATGAGGCGTAG+TGG | - | chr3.4:97507372-97507391 | MS.gene064719:CDS | 40.0% | |
| ! | ATTTACAATGCGTTTGGAGC+GGG | - | chr3.4:97507300-97507319 | MS.gene064719:CDS | 40.0% |
| !! | AGAACTTGTTGTAAGAGTCG+AGG | - | chr3.4:97507456-97507475 | MS.gene064719:CDS | 40.0% |
| !! | ATAGGAGGGCATGTTTTCAA+AGG | - | chr3.4:97508337-97508356 | MS.gene064719:CDS | 40.0% |
| !! | ATGGCTGGGTTATTTTGTCT+AGG | - | chr3.4:97507156-97507175 | MS.gene064719:CDS | 40.0% |
| !! | CAAGTTATGATGGATAACCG+TGG | + | chr3.4:97507982-97508001 | None:intergenic | 40.0% |
| !! | GAACTTGTTGTAAGAGTCGA+GGG | - | chr3.4:97507457-97507476 | MS.gene064719:CDS | 40.0% |
| AAACGGCTGTGAACATAGGA+GGG | - | chr3.4:97508323-97508342 | MS.gene064719:CDS | 45.0% | |
| AGTAAAGGGAAGGGTCGAAT+GGG | + | chr3.4:97508501-97508520 | None:intergenic | 45.0% | |
| ATATGGAACCCCACTTGGAT+TGG | - | chr3.4:97507954-97507973 | MS.gene064719:intron | 45.0% | |
| ATTGAAGGTTCTTCTGGTGG+AGG | - | chr3.4:97508409-97508428 | MS.gene064719:CDS | 45.0% | |
| ATTGAGCGGAGCTGAGTAAA+GGG | + | chr3.4:97508515-97508534 | None:intergenic | 45.0% | |
| CCACCAGAAGAACCTTCAAT+AGG | + | chr3.4:97508409-97508428 | None:intergenic | 45.0% | |
| CCTATTGAAGGTTCTTCTGG+TGG | - | chr3.4:97508406-97508425 | MS.gene064719:CDS | 45.0% | |
| GCACCTATTGAAGGTTCTTC+TGG | - | chr3.4:97508403-97508422 | MS.gene064719:CDS | 45.0% | |
| GGAATGAATTGTCAGGACTG+TGG | - | chr3.4:97507396-97507415 | MS.gene064719:CDS | 45.0% | |
| GTGAGAGTGAGTTCATTGGA+CGG | - | chr3.4:97508274-97508293 | MS.gene064719:CDS | 45.0% | |
| GTGTGTGAGAGTGAGTTCAT+TGG | - | chr3.4:97508270-97508289 | MS.gene064719:CDS | 45.0% | |
| GTTCTCCAGGAGTAACCTTT+CGG | - | chr3.4:97508248-97508267 | MS.gene064719:CDS | 45.0% | |
| TACGCGCATTGAACATGATC+TGG | + | chr3.4:97508301-97508320 | None:intergenic | 45.0% | |
| AACCGTGGATCCAATCCAAG+TGG | + | chr3.4:97507967-97507986 | None:intergenic | 50.0% | |
| ACACACCGAAAGGTTACTCC+TGG | + | chr3.4:97508256-97508275 | None:intergenic | 50.0% | |
| ACCGTGGATCCAATCCAAGT+GGG | + | chr3.4:97507966-97507985 | None:intergenic | 50.0% | |
| ACTCACTCTCACACACCGAA+AGG | + | chr3.4:97508266-97508285 | None:intergenic | 50.0% | |
| AGCTCCGCTCAATGCTTTCA+TGG | - | chr3.4:97508522-97508541 | MS.gene064719:CDS | 50.0% | |
| CAAACGGCTGTGAACATAGG+AGG | - | chr3.4:97508322-97508341 | MS.gene064719:CDS | 50.0% | |
| CATTGAGCGGAGCTGAGTAA+AGG | + | chr3.4:97508516-97508535 | None:intergenic | 50.0% | |
| CCATGATCTCGACGACGAAA+CGG | + | chr3.4:97507564-97507583 | None:intergenic | 50.0% | |
| CTCAATGCTTTCATGGCAGC+TGG | - | chr3.4:97508529-97508548 | MS.gene064719:CDS | 50.0% | |
| GAGTAAAGGGAAGGGTCGAA+TGG | + | chr3.4:97508502-97508521 | None:intergenic | 50.0% | |
| GCAACTACAGCTACAACCAG+CGG | - | chr3.4:97508472-97508491 | MS.gene064719:CDS | 50.0% | |
| GGTATAATGAGGCGTAGTGG+AGG | - | chr3.4:97507375-97507394 | MS.gene064719:CDS | 50.0% | |
| TCTTGACTGCTACTCAGGGT+TGG | - | chr3.4:97508198-97508217 | MS.gene064719:CDS | 50.0% | |
| TGCTACTCAGGGTTGGAGTT+GGG | - | chr3.4:97508205-97508224 | MS.gene064719:CDS | 50.0% | |
| !! | GCTGCCATGAAAGCATTGAG+CGG | + | chr3.4:97508529-97508548 | None:intergenic | 50.0% |
| ACTCCTGGAGAACTCACCTC+TGG | + | chr3.4:97508241-97508260 | None:intergenic | 55.0% | |
| AGCGGAGCTGAGTAAAGGGA+AGG | + | chr3.4:97508511-97508530 | None:intergenic | 55.0% | |
| ATACCTGTGGTAGGGATGGG+TGG | + | chr3.4:97507648-97507667 | None:intergenic | 55.0% | |
| CCGTGGATCCAATCCAAGTG+GGG | + | chr3.4:97507965-97507984 | None:intergenic | 55.0% | |
| CCGTTTCGTCGTCGAGATCA+TGG | - | chr3.4:97507561-97507580 | MS.gene064719:intron | 55.0% | |
| CTGCTACTCAGGGTTGGAGT+TGG | - | chr3.4:97508204-97508223 | MS.gene064719:CDS | 55.0% | |
| CTGGAGAACTCACCTCTGGT+GGG | + | chr3.4:97508237-97508256 | None:intergenic | 55.0% | |
| GCGGAGCTGAGTAAAGGGAA+GGG | + | chr3.4:97508510-97508529 | None:intergenic | 55.0% | |
| GTTGGGACAATTCCCACCAG+AGG | - | chr3.4:97508222-97508241 | MS.gene064719:CDS | 55.0% | |
| TGGTAGGGATGGGTGGTTGA+GGG | + | chr3.4:97507641-97507660 | None:intergenic | 55.0% | |
| TGGTTGAGGGCAAGGAAGAG+AGG | + | chr3.4:97507628-97507647 | None:intergenic | 55.0% | |
| ! | CCCCACTTGGATTGGATCCA+CGG | - | chr3.4:97507962-97507981 | MS.gene064719:intron | 55.0% |
| AGGGTCGAATGGGATACCGC+TGG | + | chr3.4:97508491-97508510 | None:intergenic | 60.0% | |
| CAACCACCCATCCCTACCAC+AGG | - | chr3.4:97507642-97507661 | MS.gene064719:intron | 60.0% | |
| CCACCAGAGGTGAGTTCTCC+AGG | - | chr3.4:97508235-97508254 | MS.gene064719:CDS | 60.0% | |
| CCTGGAGAACTCACCTCTGG+TGG | + | chr3.4:97508238-97508257 | None:intergenic | 60.0% | |
| CGTTCACGGCGTTTAGCAGC+TGG | + | chr3.4:97507519-97507538 | None:intergenic | 60.0% | |
| GTGGTAGGGATGGGTGGTTG+AGG | + | chr3.4:97507642-97507661 | None:intergenic | 60.0% | |
| GGGATGGGTGGTTGAGGGCA+AGG | + | chr3.4:97507636-97507655 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 97507156 | 97508585 | 97507156 | ID=MS.gene064719 |
| chr3.4 | mRNA | 97507156 | 97508585 | 97507156 | ID=MS.gene064719.t1;Parent=MS.gene064719 |
| chr3.4 | exon | 97508123 | 97508585 | 97508123 | ID=MS.gene064719.t1.exon1;Parent=MS.gene064719.t1 |
| chr3.4 | CDS | 97508123 | 97508585 | 97508123 | ID=cds.MS.gene064719.t1;Parent=MS.gene064719.t1 |
| chr3.4 | exon | 97507156 | 97507526 | 97507156 | ID=MS.gene064719.t1.exon2;Parent=MS.gene064719.t1 |
| chr3.4 | CDS | 97507156 | 97507526 | 97507156 | ID=cds.MS.gene064719.t1;Parent=MS.gene064719.t1 |
| Gene Sequence |
| Protein sequence |
