Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064814.t1 | XP_013462245.1 | 99.4 | 544 | 3 | 0 | 1 | 544 | 1 | 544 | 0.00E+00 | 1118.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064814.t1 | Q00624 | 53.6 | 541 | 238 | 5 | 3 | 534 | 4 | 540 | 4.6e-169 | 595.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064814.t1 | A0A072VDP0 | 99.4 | 544 | 3 | 0 | 1 | 544 | 1 | 544 | 0.0e+00 | 1118.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052774 | MS.gene064814 | 0.825869 | 3.71E-54 | -1.69E-46 |
| MS.gene05929 | MS.gene064814 | 0.8175 | 3.19E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene064814 | MS.gene28548 | PPI |
| MS.gene064814 | MS.gene44958 | PPI |
| MS.gene064814 | MS.gene87346 | PPI |
| MS.gene011879 | MS.gene064814 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064814.t1 | MTR_3g115050 | 99.449 | 544 | 3 | 0 | 1 | 544 | 1 | 544 | 0.0 | 1112 |
| MS.gene064814.t1 | MTR_1g026410 | 84.871 | 542 | 78 | 1 | 7 | 544 | 2 | 543 | 0.0 | 941 |
| MS.gene064814.t1 | MTR_4g075690 | 74.719 | 534 | 134 | 1 | 11 | 544 | 11 | 543 | 0.0 | 848 |
| MS.gene064814.t1 | MTR_4g049390 | 70.849 | 518 | 151 | 0 | 23 | 540 | 20 | 537 | 0.0 | 791 |
| MS.gene064814.t1 | MTR_2g088080 | 72.727 | 517 | 141 | 0 | 23 | 539 | 23 | 539 | 0.0 | 783 |
| MS.gene064814.t1 | MTR_4g048350 | 69.305 | 518 | 158 | 1 | 23 | 540 | 20 | 536 | 0.0 | 769 |
| MS.gene064814.t1 | MTR_4g132320 | 70.686 | 539 | 157 | 1 | 7 | 544 | 7 | 545 | 0.0 | 762 |
| MS.gene064814.t1 | MTR_4g075690 | 73.744 | 438 | 114 | 1 | 11 | 448 | 11 | 447 | 0.0 | 682 |
| MS.gene064814.t1 | MTR_2g088080 | 71.179 | 458 | 132 | 0 | 82 | 539 | 1 | 458 | 0.0 | 673 |
| MS.gene064814.t1 | MTR_8g479390 | 60.735 | 517 | 200 | 2 | 25 | 540 | 26 | 540 | 0.0 | 642 |
| MS.gene064814.t1 | MTR_5g018270 | 59.730 | 519 | 205 | 2 | 22 | 540 | 23 | 537 | 0.0 | 626 |
| MS.gene064814.t1 | MTR_8g479380 | 56.615 | 514 | 220 | 3 | 24 | 536 | 23 | 534 | 0.0 | 607 |
| MS.gene064814.t1 | MTR_4g083190 | 52.820 | 532 | 242 | 4 | 11 | 534 | 8 | 538 | 0.0 | 560 |
| MS.gene064814.t1 | MTR_4g083210 | 51.866 | 536 | 250 | 5 | 3 | 534 | 1 | 532 | 0.0 | 559 |
| MS.gene064814.t1 | MTR_3g083440 | 51.296 | 540 | 251 | 5 | 3 | 534 | 1 | 536 | 0.0 | 548 |
| MS.gene064814.t1 | MTR_3g083390 | 51.296 | 540 | 251 | 5 | 3 | 534 | 1 | 536 | 0.0 | 548 |
| MS.gene064814.t1 | MTR_3g083430 | 51.111 | 540 | 252 | 5 | 3 | 534 | 1 | 536 | 0.0 | 546 |
| MS.gene064814.t1 | MTR_3g083400 | 51.111 | 540 | 252 | 5 | 3 | 534 | 1 | 536 | 0.0 | 545 |
| MS.gene064814.t1 | MTR_3g083450 | 52.510 | 518 | 237 | 4 | 25 | 534 | 21 | 537 | 0.0 | 541 |
| MS.gene064814.t1 | MTR_4g101650 | 52.110 | 545 | 240 | 7 | 11 | 535 | 8 | 551 | 0.0 | 532 |
| MS.gene064814.t1 | MTR_3g008580 | 51.515 | 528 | 235 | 7 | 27 | 534 | 26 | 552 | 4.09e-180 | 520 |
| MS.gene064814.t1 | MTR_7g051440 | 52.444 | 532 | 227 | 9 | 27 | 537 | 26 | 552 | 2.73e-178 | 515 |
| MS.gene064814.t1 | MTR_3g083410 | 51.829 | 492 | 228 | 4 | 51 | 534 | 10 | 500 | 2.21e-175 | 505 |
| MS.gene064814.t1 | MTR_1g090707 | 47.917 | 528 | 263 | 7 | 19 | 535 | 12 | 538 | 3.07e-161 | 472 |
| MS.gene064814.t1 | MTR_4g133150 | 58.654 | 208 | 67 | 2 | 134 | 339 | 21 | 211 | 1.25e-71 | 228 |
| MS.gene064814.t1 | MTR_5g020620 | 30.175 | 570 | 348 | 18 | 5 | 533 | 1 | 561 | 2.98e-60 | 209 |
| MS.gene064814.t1 | MTR_5g020600 | 29.369 | 555 | 336 | 19 | 20 | 533 | 27 | 566 | 1.25e-56 | 199 |
| MS.gene064814.t1 | MTR_3g462760 | 27.837 | 564 | 364 | 13 | 5 | 533 | 1 | 556 | 4.13e-54 | 192 |
| MS.gene064814.t1 | MTR_5g069680 | 27.690 | 567 | 365 | 16 | 3 | 533 | 1 | 558 | 4.93e-53 | 189 |
| MS.gene064814.t1 | MTR_5g081810 | 28.839 | 534 | 337 | 13 | 35 | 533 | 4 | 529 | 1.34e-52 | 187 |
| MS.gene064814.t1 | MTR_4g015120 | 27.256 | 554 | 366 | 12 | 11 | 533 | 10 | 557 | 2.80e-49 | 179 |
| MS.gene064814.t1 | MTR_3g078740 | 25.581 | 602 | 352 | 20 | 11 | 537 | 8 | 588 | 4.11e-46 | 171 |
| MS.gene064814.t1 | MTR_3g078700 | 26.496 | 585 | 329 | 20 | 5 | 537 | 4 | 539 | 2.17e-45 | 168 |
| MS.gene064814.t1 | MTR_8g091390 | 25.818 | 581 | 335 | 18 | 20 | 538 | 26 | 572 | 2.41e-43 | 162 |
| MS.gene064814.t1 | MTR_2g008330 | 27.533 | 523 | 337 | 15 | 51 | 533 | 59 | 579 | 9.51e-42 | 158 |
| MS.gene064814.t1 | MTR_5g073210 | 28.671 | 572 | 343 | 21 | 12 | 533 | 4 | 560 | 1.02e-41 | 158 |
| MS.gene064814.t1 | MTR_3g101640 | 28.884 | 502 | 303 | 16 | 44 | 499 | 44 | 537 | 8.06e-40 | 152 |
| MS.gene064814.t1 | MTR_7g458880 | 24.324 | 555 | 362 | 15 | 30 | 533 | 33 | 580 | 2.31e-39 | 151 |
| MS.gene064814.t1 | MTR_3g101635 | 28.803 | 493 | 299 | 15 | 51 | 499 | 48 | 532 | 7.35e-39 | 150 |
| MS.gene064814.t1 | MTR_3g071890 | 27.545 | 501 | 315 | 14 | 51 | 510 | 54 | 547 | 2.13e-38 | 149 |
| MS.gene064814.t1 | MTR_8g027375 | 25.926 | 513 | 342 | 11 | 30 | 506 | 34 | 544 | 4.36e-38 | 147 |
| MS.gene064814.t1 | MTR_7g065980 | 28.827 | 503 | 299 | 20 | 47 | 498 | 42 | 536 | 5.78e-38 | 147 |
| MS.gene064814.t1 | MTR_3g078730 | 24.826 | 576 | 341 | 16 | 10 | 537 | 7 | 538 | 8.79e-38 | 146 |
| MS.gene064814.t1 | MTR_7g060460 | 23.646 | 554 | 368 | 15 | 30 | 533 | 33 | 581 | 3.81e-36 | 142 |
| MS.gene064814.t1 | MTR_7g058690 | 24.007 | 554 | 365 | 16 | 30 | 533 | 33 | 580 | 9.64e-36 | 141 |
| MS.gene064814.t1 | MTR_5g083360 | 25.794 | 504 | 310 | 15 | 48 | 499 | 42 | 533 | 6.60e-35 | 139 |
| MS.gene064814.t1 | MTR_7g062250 | 24.501 | 551 | 363 | 16 | 30 | 533 | 34 | 578 | 1.68e-34 | 137 |
| MS.gene064814.t1 | MTR_7g062310 | 24.905 | 526 | 340 | 16 | 21 | 499 | 42 | 559 | 3.63e-33 | 134 |
| MS.gene064814.t1 | MTR_7g065970 | 25.824 | 546 | 336 | 18 | 1 | 493 | 1 | 530 | 4.47e-33 | 133 |
| MS.gene064814.t1 | MTR_4g064530 | 25.191 | 524 | 321 | 18 | 29 | 499 | 46 | 551 | 1.76e-32 | 132 |
| MS.gene064814.t1 | MTR_4g019225 | 26.316 | 551 | 347 | 16 | 34 | 533 | 30 | 572 | 2.21e-31 | 128 |
| MS.gene064814.t1 | MTR_4g064530 | 24.663 | 519 | 321 | 18 | 30 | 493 | 44 | 547 | 4.32e-30 | 124 |
| MS.gene064814.t1 | MTR_4g133160 | 50.459 | 109 | 40 | 1 | 415 | 523 | 1 | 95 | 2.65e-28 | 108 |
| MS.gene064814.t1 | MTR_5g018290 | 62.121 | 66 | 25 | 0 | 475 | 540 | 5 | 70 | 4.45e-23 | 93.2 |
| MS.gene064814.t1 | MTR_5g081790 | 28.077 | 260 | 154 | 8 | 258 | 491 | 168 | 420 | 1.00e-11 | 67.4 |
| MS.gene064814.t1 | MTR_5g081790 | 24.868 | 189 | 126 | 5 | 8 | 188 | 6 | 186 | 9.23e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064814.t1 | AT1G76160 | 79.592 | 539 | 109 | 1 | 6 | 544 | 4 | 541 | 0.0 | 906 |
| MS.gene064814.t1 | AT1G41830 | 78.918 | 536 | 112 | 1 | 9 | 544 | 8 | 542 | 0.0 | 892 |
| MS.gene064814.t1 | AT1G21850 | 73.996 | 523 | 134 | 2 | 19 | 541 | 18 | 538 | 0.0 | 813 |
| MS.gene064814.t1 | AT1G21860 | 69.944 | 539 | 156 | 3 | 2 | 540 | 5 | 537 | 0.0 | 795 |
| MS.gene064814.t1 | AT4G22010 | 69.259 | 540 | 162 | 2 | 6 | 544 | 5 | 541 | 0.0 | 780 |
| MS.gene064814.t1 | AT4G38420 | 67.658 | 538 | 168 | 3 | 12 | 543 | 12 | 549 | 0.0 | 759 |
| MS.gene064814.t1 | AT4G28090 | 61.967 | 539 | 193 | 6 | 9 | 540 | 8 | 541 | 0.0 | 691 |
| MS.gene064814.t1 | AT4G38420 | 66.383 | 470 | 152 | 3 | 12 | 475 | 12 | 481 | 0.0 | 643 |
| MS.gene064814.t1 | AT5G66920 | 57.996 | 519 | 216 | 1 | 22 | 540 | 29 | 545 | 0.0 | 636 |
| MS.gene064814.t1 | AT4G38420 | 66.817 | 443 | 141 | 3 | 12 | 448 | 12 | 454 | 0.0 | 607 |
| MS.gene064814.t1 | AT1G55570 | 54.731 | 539 | 234 | 4 | 10 | 539 | 9 | 546 | 0.0 | 591 |
| MS.gene064814.t1 | AT3G13400 | 54.664 | 536 | 233 | 5 | 11 | 538 | 9 | 542 | 0.0 | 580 |
| MS.gene064814.t1 | AT3G13400 | 54.664 | 536 | 233 | 5 | 11 | 538 | 9 | 542 | 0.0 | 580 |
| MS.gene064814.t1 | AT1G55560 | 53.731 | 536 | 238 | 5 | 11 | 538 | 8 | 541 | 0.0 | 576 |
| MS.gene064814.t1 | AT4G37160 | 53.626 | 524 | 237 | 3 | 22 | 544 | 23 | 541 | 0.0 | 571 |
| MS.gene064814.t1 | AT2G23630 | 54.753 | 526 | 234 | 3 | 17 | 542 | 23 | 544 | 0.0 | 568 |
| MS.gene064814.t1 | AT2G23630 | 54.753 | 526 | 234 | 3 | 17 | 542 | 18 | 539 | 0.0 | 567 |
| MS.gene064814.t1 | AT3G13390 | 55.364 | 522 | 223 | 4 | 26 | 538 | 24 | 544 | 0.0 | 566 |
| MS.gene064814.t1 | AT5G48450 | 52.680 | 541 | 239 | 10 | 12 | 537 | 8 | 546 | 0.0 | 545 |
| MS.gene064814.t1 | AT5G48450 | 52.680 | 541 | 239 | 10 | 12 | 537 | 8 | 546 | 0.0 | 545 |
| MS.gene064814.t1 | AT4G12420 | 51.920 | 547 | 242 | 7 | 11 | 537 | 6 | 551 | 0.0 | 543 |
| MS.gene064814.t1 | AT4G12420 | 51.920 | 547 | 242 | 7 | 11 | 537 | 6 | 551 | 0.0 | 543 |
| MS.gene064814.t1 | AT1G75790 | 49.348 | 537 | 261 | 3 | 11 | 536 | 8 | 544 | 0.0 | 525 |
| MS.gene064814.t1 | AT5G51480 | 49.627 | 536 | 249 | 9 | 19 | 534 | 17 | 551 | 0.0 | 524 |
| MS.gene064814.t1 | AT4G25240 | 50.271 | 553 | 254 | 8 | 1 | 534 | 1 | 551 | 0.0 | 524 |
| MS.gene064814.t1 | AT4G25240 | 50.271 | 553 | 254 | 8 | 1 | 534 | 1 | 551 | 0.0 | 524 |
| MS.gene064814.t1 | AT4G37160 | 54.439 | 428 | 193 | 2 | 22 | 448 | 23 | 449 | 6.99e-165 | 476 |
| MS.gene064814.t1 | AT4G39830 | 28.857 | 551 | 325 | 15 | 11 | 506 | 17 | 555 | 4.56e-55 | 195 |
| MS.gene064814.t1 | AT2G38080 | 27.156 | 545 | 353 | 13 | 25 | 533 | 22 | 558 | 1.65e-53 | 191 |
| MS.gene064814.t1 | AT5G58910 | 28.021 | 571 | 353 | 16 | 11 | 533 | 7 | 567 | 7.02e-52 | 186 |
| MS.gene064814.t1 | AT5G21105 | 27.586 | 551 | 326 | 16 | 12 | 507 | 22 | 554 | 2.26e-51 | 185 |
| MS.gene064814.t1 | AT5G03260 | 28.292 | 562 | 353 | 18 | 11 | 533 | 7 | 557 | 5.39e-51 | 184 |
| MS.gene064814.t1 | AT5G58910 | 28.843 | 527 | 321 | 15 | 51 | 533 | 50 | 566 | 1.72e-50 | 182 |
| MS.gene064814.t1 | AT5G21105 | 28.037 | 535 | 312 | 16 | 12 | 491 | 22 | 538 | 5.43e-50 | 181 |
| MS.gene064814.t1 | AT5G01190 | 27.392 | 533 | 355 | 12 | 32 | 533 | 27 | 558 | 4.55e-49 | 178 |
| MS.gene064814.t1 | AT5G21100 | 26.715 | 554 | 333 | 17 | 34 | 534 | 28 | 561 | 5.77e-49 | 178 |
| MS.gene064814.t1 | AT5G01190 | 28.016 | 514 | 338 | 12 | 51 | 533 | 32 | 544 | 1.59e-48 | 176 |
| MS.gene064814.t1 | AT5G58910 | 28.273 | 527 | 317 | 16 | 51 | 533 | 14 | 523 | 5.69e-46 | 169 |
| MS.gene064814.t1 | AT2G46570 | 25.603 | 539 | 352 | 13 | 30 | 527 | 32 | 562 | 7.10e-41 | 155 |
| MS.gene064814.t1 | AT4G39830 | 28.942 | 463 | 263 | 14 | 98 | 506 | 8 | 458 | 9.58e-41 | 154 |
| MS.gene064814.t1 | AT4G39830 | 28.942 | 463 | 263 | 14 | 98 | 506 | 10 | 460 | 1.13e-40 | 154 |
| MS.gene064814.t1 | AT2G30210 | 27.599 | 529 | 332 | 16 | 10 | 493 | 8 | 530 | 4.02e-40 | 154 |
| MS.gene064814.t1 | AT5G05390 | 27.935 | 494 | 315 | 13 | 44 | 499 | 41 | 531 | 3.14e-39 | 151 |
| MS.gene064814.t1 | AT5G09360 | 28.512 | 484 | 304 | 13 | 51 | 498 | 57 | 534 | 3.73e-39 | 150 |
| MS.gene064814.t1 | AT5G01050 | 25.508 | 541 | 348 | 13 | 41 | 535 | 39 | 570 | 1.71e-38 | 149 |
| MS.gene064814.t1 | AT5G01040 | 26.257 | 537 | 347 | 14 | 41 | 535 | 39 | 568 | 1.23e-37 | 147 |
| MS.gene064814.t1 | AT2G29130 | 25.319 | 549 | 360 | 17 | 30 | 533 | 30 | 573 | 3.13e-37 | 145 |
| MS.gene064814.t1 | AT3G09220 | 26.769 | 523 | 338 | 13 | 10 | 493 | 11 | 527 | 6.29e-37 | 144 |
| MS.gene064814.t1 | AT5G48100 | 26.946 | 501 | 316 | 16 | 51 | 507 | 43 | 537 | 7.77e-37 | 144 |
| MS.gene064814.t1 | AT4G39830 | 28.078 | 463 | 254 | 14 | 98 | 506 | 10 | 447 | 2.07e-36 | 141 |
| MS.gene064814.t1 | AT5G07130 | 27.866 | 506 | 307 | 16 | 51 | 506 | 45 | 542 | 4.52e-36 | 142 |
| MS.gene064814.t1 | AT1G18140 | 26.538 | 520 | 315 | 19 | 32 | 493 | 31 | 541 | 1.02e-34 | 138 |
| MS.gene064814.t1 | AT2G40370 | 25.174 | 576 | 375 | 15 | 12 | 533 | 7 | 580 | 1.27e-33 | 135 |
| MS.gene064814.t1 | AT2G46570 | 25.519 | 482 | 310 | 13 | 87 | 527 | 4 | 477 | 8.27e-33 | 131 |
| MS.gene064814.t1 | AT5G21105 | 28.746 | 327 | 194 | 9 | 206 | 507 | 51 | 363 | 2.20e-31 | 125 |
| MS.gene064814.t1 | AT5G60020 | 23.090 | 589 | 376 | 19 | 5 | 533 | 6 | 577 | 1.86e-30 | 125 |
| MS.gene064814.t1 | AT3G09220 | 26.107 | 429 | 278 | 11 | 103 | 493 | 3 | 430 | 4.51e-26 | 111 |
| MS.gene064814.t1 | AT5G07130 | 26.940 | 464 | 281 | 16 | 93 | 506 | 2 | 457 | 3.13e-25 | 109 |
| MS.gene064814.t1 | AT5G07130 | 26.940 | 464 | 281 | 16 | 93 | 506 | 2 | 457 | 3.13e-25 | 109 |
| MS.gene064814.t1 | AT5G60020 | 25.784 | 287 | 194 | 7 | 5 | 279 | 6 | 285 | 3.37e-24 | 106 |
| MS.gene064814.t1 | AT5G60020 | 27.386 | 241 | 162 | 6 | 51 | 279 | 14 | 253 | 1.22e-23 | 105 |
Find 158 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCTACTCTTTCTTTGTTGC+TGG | 0.183841 | 3.4:-98451554 | MS.gene064814:CDS |
| CAGAAAGCAGCTGGCGGTTT+TGG | 0.198928 | 3.4:-98456515 | MS.gene064814:CDS |
| CCACAAAGACGTGCATTCTT+TGG | 0.246333 | 3.4:+98450770 | None:intergenic |
| GGAGATTACACTGTCCTTAT+TGG | 0.249934 | 3.4:-98456437 | MS.gene064814:CDS |
| TTCCAGTTGAAGAATTTATA+TGG | 0.264147 | 3.4:+98458578 | None:intergenic |
| GAACAATGTTCTCGTTGTTT+TGG | 0.267342 | 3.4:+98451594 | None:intergenic |
| TGTTGAAGACATTGATAATA+AGG | 0.272968 | 3.4:+98458327 | None:intergenic |
| GGAACTTGAGGACCGAGTTT+TGG | 0.289721 | 3.4:-98450871 | MS.gene064814:CDS |
| AGCTCTCCTGGTCAGGTTAA+TGG | 0.304843 | 3.4:-98451806 | MS.gene064814:CDS |
| TCATTCGAAGATGGTGTTTC+GGG | 0.308208 | 3.4:-98456635 | MS.gene064814:CDS |
| CTCATTCGAAGATGGTGTTT+CGG | 0.314795 | 3.4:-98456636 | MS.gene064814:CDS |
| AACTCTGCAGGCGCAGTATC+AGG | 0.316792 | 3.4:-98452318 | MS.gene064814:CDS |
| GTGTAATCTCCAGCTGGTTC+AGG | 0.327562 | 3.4:+98456449 | None:intergenic |
| CTTCAAGTGAAGGATCAAAT+TGG | 0.340873 | 3.4:-98456569 | MS.gene064814:CDS |
| TGGTAGGATCCTTGTGGGTT+AGG | 0.342056 | 3.4:+98451869 | None:intergenic |
| GTTCAGAGCTATCATCTTGA+TGG | 0.346311 | 3.4:-98451575 | MS.gene064814:CDS |
| TAAAGGTATATCCCTATTCA+TGG | 0.349134 | 3.4:-98450931 | MS.gene064814:intron |
| TTGATCAATGGGCAATTTCC+TGG | 0.354638 | 3.4:-98458380 | MS.gene064814:CDS |
| ATCAATGGTCGTGGACCTAA+TGG | 0.358266 | 3.4:-98452720 | MS.gene064814:CDS |
| ATAAATAGCCGTCCATGAAT+AGG | 0.359487 | 3.4:+98450919 | None:intergenic |
| ATCCATATAAATTCTTCAAC+TGG | 0.363390 | 3.4:-98458580 | MS.gene064814:CDS |
| GCGAGCTTAAGAGGCGTGTC+TGG | 0.366650 | 3.4:+98451743 | None:intergenic |
| CACAACAAAGACAATCATTC+TGG | 0.374461 | 3.4:-98451831 | MS.gene064814:CDS |
| GATCCTTGTGGGTTAGGCCT+TGG | 0.380517 | 3.4:+98451875 | None:intergenic |
| TAGGTCCACGACCATTGATT+AGG | 0.384593 | 3.4:+98452724 | None:intergenic |
| ACGTTGAATGATAATCCATT+AGG | 0.386904 | 3.4:+98452705 | None:intergenic |
| TAAACCTTTGCTAGCTCAAA+GGG | 0.388940 | 3.4:+98450721 | None:intergenic |
| GGGAAAGGGACTGGAATTCT+AGG | 0.390793 | 3.4:+98456470 | None:intergenic |
| CCAAAGAATGCACGTCTTTG+TGG | 0.391415 | 3.4:-98450770 | MS.gene064814:CDS |
| AAGTTCCTCCCTGGTGGAAT+GGG | 0.392613 | 3.4:+98456602 | None:intergenic |
| GTTAATGGCAAGCAAAGATA+TGG | 0.394297 | 3.4:-98451791 | MS.gene064814:CDS |
| ACACTGTCCTTATTGGTGAT+TGG | 0.395975 | 3.4:-98456430 | MS.gene064814:CDS |
| GCTACTCTTTCTTTGTTGCT+GGG | 0.396075 | 3.4:-98451553 | MS.gene064814:intron |
| TACAGGGTATATTGATCAAT+GGG | 0.402058 | 3.4:-98458391 | MS.gene064814:intron |
| CGAATGAGTTCCTTCTCTGC+TGG | 0.403249 | 3.4:+98456651 | None:intergenic |
| AAGTAATCAGCGAGCTTAAG+AGG | 0.406604 | 3.4:+98451734 | None:intergenic |
| AGACGTGCATTCTTTGGAAT+AGG | 0.410783 | 3.4:+98450776 | None:intergenic |
| ACTTGTACCAATCACCAATA+AGG | 0.411862 | 3.4:+98456423 | None:intergenic |
| ATCATTCTGGCTAGCTCTCC+TGG | 0.412395 | 3.4:-98451818 | MS.gene064814:CDS |
| TAAATAGCCGTCCATGAATA+GGG | 0.412871 | 3.4:+98450920 | None:intergenic |
| CTTCTACCAACTTCAGTTTG+TGG | 0.415762 | 3.4:+98452511 | None:intergenic |
| AATACCTGATTGAGCGGGCT+TGG | 0.429385 | 3.4:+98452250 | None:intergenic |
| TCTGGCTAGCTCTCCTGGTC+AGG | 0.435795 | 3.4:-98451813 | MS.gene064814:CDS |
| GCCTTGGTCCACTTGCTGTA+AGG | 0.436164 | 3.4:+98451891 | None:intergenic |
| TTACAGGGTATATTGATCAA+TGG | 0.440666 | 3.4:-98458392 | MS.gene064814:intron |
| TGAACCAAGCCCGCTCAATC+AGG | 0.441372 | 3.4:-98452254 | MS.gene064814:intron |
| ATTGAAAGCCCATCTTGATA+AGG | 0.446007 | 3.4:-98452775 | MS.gene064814:CDS |
| AACTGCTGATCAACCTTCTC+AGG | 0.451706 | 3.4:-98452412 | MS.gene064814:CDS |
| GACCAATCAACTTGGATTGT+AGG | 0.454328 | 3.4:+98452279 | None:intergenic |
| TTGAAAGCCCATCTTGATAA+GGG | 0.458638 | 3.4:-98452774 | MS.gene064814:CDS |
| TGGACAACTTCTAGCAGAAA+CGG | 0.460958 | 3.4:-98451275 | MS.gene064814:CDS |
| CTCCAGCTGGTTCAGGGAAA+GGG | 0.465016 | 3.4:+98456456 | None:intergenic |
| ATTAGGACTCCATCAGGTAT+AGG | 0.466437 | 3.4:+98452741 | None:intergenic |
| GTCCCTTTCCCTGAACCAGC+TGG | 0.467887 | 3.4:-98456458 | MS.gene064814:CDS |
| ACTCTCAATTTAGCTGCTGT+TGG | 0.471199 | 3.4:-98458656 | MS.gene064814:CDS |
| GCTTCTTTCCCTTATCAAGA+TGG | 0.472069 | 3.4:+98452766 | None:intergenic |
| CTTCTTTCCCTTATCAAGAT+GGG | 0.472616 | 3.4:+98452767 | None:intergenic |
| GAAGTTCCTCCCTGGTGGAA+TGG | 0.473761 | 3.4:+98456601 | None:intergenic |
| ATTAATACATACCGTATGGT+TGG | 0.474732 | 3.4:+98456400 | None:intergenic |
| AAACGCGTAAATAAAATTGT+TGG | 0.475981 | 3.4:+98450831 | None:intergenic |
| TTTGTAACAGAATGAATGTC+TGG | 0.477062 | 3.4:+98458356 | None:intergenic |
| TACGGTGACATTTACCCACT+TGG | 0.481704 | 3.4:-98458548 | MS.gene064814:CDS |
| TGTAATCTCCAGCTGGTTCA+GGG | 0.488077 | 3.4:+98456450 | None:intergenic |
| CCACAAGGATCCTACCATTA+CGG | 0.488883 | 3.4:-98451863 | MS.gene064814:CDS |
| TTCAACTGGAATGTTACTTA+CGG | 0.490501 | 3.4:-98458566 | MS.gene064814:CDS |
| CGTCTTTGTGGTAGGGCAAG+TGG | 0.492438 | 3.4:-98450758 | MS.gene064814:CDS |
| TGCTTGCCATTAACCTGACC+AGG | 0.497002 | 3.4:+98451800 | None:intergenic |
| TCTCCAGCTGGTTCAGGGAA+AGG | 0.497253 | 3.4:+98456455 | None:intergenic |
| CCCACTTGGAGTTCGTCAAA+GGG | 0.500885 | 3.4:-98458534 | MS.gene064814:intron |
| GACCTACAATCCAAGTTGAT+TGG | 0.501737 | 3.4:-98452281 | MS.gene064814:CDS |
| CAGGAAAGACTTATAGACTT+AGG | 0.506224 | 3.4:-98452581 | MS.gene064814:CDS |
| CTCCTCACTTGATGTTCATG+TGG | 0.506285 | 3.4:-98452457 | MS.gene064814:CDS |
| GTCTTTGTGGTAGGGCAAGT+GGG | 0.508618 | 3.4:-98450757 | MS.gene064814:CDS |
| ACCCACTTGGAGTTCGTCAA+AGG | 0.514899 | 3.4:-98458535 | MS.gene064814:CDS |
| CTTCGCTATAGCAACTCTGC+AGG | 0.516465 | 3.4:-98452330 | MS.gene064814:CDS |
| TCAAAACCACAAACTGAAGT+TGG | 0.517789 | 3.4:-98452517 | MS.gene064814:CDS |
| GCCACCACCAGTGGGTCTCT+CGG | 0.518068 | 3.4:+98451676 | None:intergenic |
| GGACAACTTCTAGCAGAAAC+GGG | 0.518926 | 3.4:-98451274 | MS.gene064814:CDS |
| TCCGAGAGACCCACTGGTGG+TGG | 0.520583 | 3.4:-98451677 | MS.gene064814:CDS |
| AGTGGTGGTGAGAATCTTAG+AGG | 0.523161 | 3.4:+98452359 | None:intergenic |
| ACTTGGATTGTAGGTCCACC+AGG | 0.525149 | 3.4:+98452288 | None:intergenic |
| ATGAACCCTTTCTCATCTCA+TGG | 0.525350 | 3.4:-98458298 | MS.gene064814:intron |
| CAAACTGAAGTTGGTAGAAG+TGG | 0.526063 | 3.4:-98452508 | MS.gene064814:CDS |
| AGGACTAACCTTACAGCAAG+TGG | 0.527132 | 3.4:-98451899 | MS.gene064814:CDS |
| CCTGATGGAGTCCTAATCAA+TGG | 0.528672 | 3.4:-98452735 | MS.gene064814:CDS |
| TCACAGATGTGTCAAGGTAA+AGG | 0.529173 | 3.4:+98451654 | None:intergenic |
| GCTGGTTCAGGGAAAGGGAC+TGG | 0.529643 | 3.4:+98456461 | None:intergenic |
| CTAGCATTTCAGAAAGCAGC+TGG | 0.529779 | 3.4:-98456524 | MS.gene064814:CDS |
| GGTTCAAAGACCAATCAACT+TGG | 0.532843 | 3.4:+98452271 | None:intergenic |
| CTTGTACCATGAGATGAGAA+AGG | 0.533419 | 3.4:+98458292 | None:intergenic |
| GCTGATTACTTCAAAATCTC+CGG | 0.535779 | 3.4:-98451722 | MS.gene064814:CDS |
| CGAGCTTAAGAGGCGTGTCT+GGG | 0.536643 | 3.4:+98451744 | None:intergenic |
| ATTTCAATGTGTAGTATGGA+TGG | 0.541372 | 3.4:-98451305 | MS.gene064814:intron |
| AGAATGCACGTCTTTGTGGT+AGG | 0.541610 | 3.4:-98450766 | MS.gene064814:CDS |
| AAGAAGCTTCCTATACCTGA+TGG | 0.542552 | 3.4:-98452750 | MS.gene064814:CDS |
| AAGGTAAAGGCCACCACCAG+TGG | 0.545521 | 3.4:+98451667 | None:intergenic |
| AGGAAACTCGTCTCTGATTG+AGG | 0.545951 | 3.4:+98450796 | None:intergenic |
| CCATTGATTAGGACTCCATC+AGG | 0.546662 | 3.4:+98452735 | None:intergenic |
| ACAACATGCCCCATTCCACC+AGG | 0.552266 | 3.4:-98456611 | MS.gene064814:CDS |
| GGAATGGGATCCAGCAGAGA+AGG | 0.552434 | 3.4:-98456661 | MS.gene064814:CDS |
| AGCATATCCGAGAGACCCAC+TGG | 0.553204 | 3.4:-98451683 | MS.gene064814:CDS |
| AGAAGGAACTCATTCGAAGA+TGG | 0.555890 | 3.4:-98456644 | MS.gene064814:CDS |
| CGTAATGGTAGGATCCTTGT+GGG | 0.556156 | 3.4:+98451864 | None:intergenic |
| GCTTTCTGAAATGCTAGAGA+TGG | 0.570090 | 3.4:+98456530 | None:intergenic |
| TTGTACCATGAGATGAGAAA+GGG | 0.571758 | 3.4:+98458293 | None:intergenic |
| GAATGCACGTCTTTGTGGTA+GGG | 0.578512 | 3.4:-98450765 | MS.gene064814:CDS |
| CACTTGACAACGTTGGAATG+TGG | 0.580641 | 3.4:-98450892 | MS.gene064814:CDS |
| CACTTATATACTTCAAGTGA+AGG | 0.581224 | 3.4:-98456579 | MS.gene064814:CDS |
| TATGTTGCACTTGACAACGT+TGG | 0.582455 | 3.4:-98450899 | MS.gene064814:CDS |
| GGAGTCCTAATCAATGGTCG+TGG | 0.582546 | 3.4:-98452729 | MS.gene064814:CDS |
| AGTTCCTCCCTGGTGGAATG+GGG | 0.583323 | 3.4:+98456603 | None:intergenic |
| ATACTGTCGTGCCCAAAACT+CGG | 0.586339 | 3.4:+98450859 | None:intergenic |
| TTATCATTCAACGTTGAACA+AGG | 0.591618 | 3.4:-98452696 | MS.gene064814:intron |
| AATCTTAGAGGAGAATCTTG+TGG | 0.591739 | 3.4:+98452371 | None:intergenic |
| AGGACAGTGTAATCTCCAGC+TGG | 0.591788 | 3.4:+98456443 | None:intergenic |
| GATCTTCAGCTGAAGTAATG+TGG | 0.599045 | 3.4:+98458600 | None:intergenic |
| ACCCTTTGACGAACTCCAAG+TGG | 0.599197 | 3.4:+98458533 | None:intergenic |
| AACCTTTGCTAGCTCAAAGG+GGG | 0.603610 | 3.4:+98450723 | None:intergenic |
| AGTAGCAACACATAGAAGCA+AGG | 0.603929 | 3.4:+98458631 | None:intergenic |
| TTGTGTTTATGAGACCGTAA+TGG | 0.605518 | 3.4:+98451849 | None:intergenic |
| ACAGAATGAATGTCTGGACC+AGG | 0.605888 | 3.4:+98458362 | None:intergenic |
| AGTAGCACGTTGCACCACTC+AGG | 0.606940 | 3.4:-98451234 | MS.gene064814:intron |
| CTGAAGTTGGTAGAAGTGGA+AGG | 0.607607 | 3.4:-98452504 | MS.gene064814:CDS |
| AGTGAAATACCTGATTGAGC+GGG | 0.607815 | 3.4:+98452245 | None:intergenic |
| ATATAAGTGAAGTTCCTCCC+TGG | 0.613485 | 3.4:+98456593 | None:intergenic |
| CCGTAATGGTAGGATCCTTG+TGG | 0.613529 | 3.4:+98451863 | None:intergenic |
| AAGTGAAATACCTGATTGAG+CGG | 0.617943 | 3.4:+98452244 | None:intergenic |
| ACGTTGGAATGTGGAACTTG+AGG | 0.618713 | 3.4:-98450883 | MS.gene064814:CDS |
| ATAGCGAAGCACCGCAGTGG+TGG | 0.618940 | 3.4:+98452344 | None:intergenic |
| ACAATGTAGTAGTCCTGAGA+AGG | 0.622508 | 3.4:+98452399 | None:intergenic |
| GTTTATGAGACCGTAATGGT+AGG | 0.623341 | 3.4:+98451853 | None:intergenic |
| TTGGTACAAGTCCAACCATA+CGG | 0.625373 | 3.4:-98456411 | MS.gene064814:intron |
| TCCTCACTTGATGTTCATGT+GGG | 0.629604 | 3.4:-98452456 | MS.gene064814:CDS |
| CTTGGATTGTAGGTCCACCA+GGG | 0.631318 | 3.4:+98452289 | None:intergenic |
| CTTGCATCACAGATGTGTCA+AGG | 0.635259 | 3.4:+98451648 | None:intergenic |
| GGTATATCCCTATTCATGGA+CGG | 0.635653 | 3.4:-98450927 | MS.gene064814:CDS |
| ACCTTACAGCAAGTGGACCA+AGG | 0.643171 | 3.4:-98451892 | MS.gene064814:CDS |
| TAAGTGAAGTTCCTCCCTGG+TGG | 0.643774 | 3.4:+98456596 | None:intergenic |
| AACATCAAGTGAGGAGTACG+TGG | 0.656057 | 3.4:+98452464 | None:intergenic |
| AGGTAAAGGCCACCACCAGT+GGG | 0.656498 | 3.4:+98451668 | None:intergenic |
| GGACCAAGGCCTAACCCACA+AGG | 0.659246 | 3.4:-98451878 | MS.gene064814:CDS |
| CCCTTTGACGAACTCCAAGT+GGG | 0.661178 | 3.4:+98458534 | None:intergenic |
| TCAATGTGTAGTATGGATGG+AGG | 0.663408 | 3.4:-98451302 | MS.gene064814:intron |
| GCATTTCAGAAAGCAGCTGG+CGG | 0.666254 | 3.4:-98456521 | MS.gene064814:CDS |
| TTCTCAGGACTACTACATTG+TGG | 0.670612 | 3.4:-98452397 | MS.gene064814:CDS |
| TAGACTTAGGATATCAAACG+TGG | 0.675596 | 3.4:-98452568 | MS.gene064814:CDS |
| TCCCACATGAACATCAAGTG+AGG | 0.677217 | 3.4:+98452455 | None:intergenic |
| TAATATGATTCTCACCTGAG+TGG | 0.682067 | 3.4:+98451220 | None:intergenic |
| TTGGATTGTAGGTCCACCAG+GGG | 0.683406 | 3.4:+98452290 | None:intergenic |
| AAACCTTTGCTAGCTCAAAG+GGG | 0.688074 | 3.4:+98450722 | None:intergenic |
| GCTATAGCGAAGCACCGCAG+TGG | 0.699087 | 3.4:+98452341 | None:intergenic |
| AGACTTAGGATATCAAACGT+GGG | 0.700576 | 3.4:-98452567 | MS.gene064814:CDS |
| CAACATGCCCCATTCCACCA+GGG | 0.718024 | 3.4:-98456610 | MS.gene064814:CDS |
| ATATCCGAGAGACCCACTGG+TGG | 0.742368 | 3.4:-98451680 | MS.gene064814:CDS |
| GTAGTATGGATGGAGGACAG+TGG | 0.742907 | 3.4:-98451295 | MS.gene064814:intron |
| TGGATTGTAGGTCCACCAGG+GGG | 0.761885 | 3.4:+98452291 | None:intergenic |
| CATGCCCCATTCCACCAGGG+AGG | 0.762341 | 3.4:-98456607 | MS.gene064814:CDS |
| TAAGATTCTCACCACCACTG+CGG | 0.773633 | 3.4:-98452355 | MS.gene064814:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 98450736 | 98458681 | 98450736 | ID=MS.gene064814 |
| chr3.4 | mRNA | 98450736 | 98458681 | 98450736 | ID=MS.gene064814.t1;Parent=MS.gene064814 |
| chr3.4 | exon | 98458535 | 98458681 | 98458535 | ID=MS.gene064814.t1.exon1;Parent=MS.gene064814.t1 |
| chr3.4 | CDS | 98458535 | 98458681 | 98458535 | ID=cds.MS.gene064814.t1;Parent=MS.gene064814.t1 |
| chr3.4 | exon | 98458299 | 98458408 | 98458299 | ID=MS.gene064814.t1.exon2;Parent=MS.gene064814.t1 |
| chr3.4 | CDS | 98458299 | 98458408 | 98458299 | ID=cds.MS.gene064814.t1;Parent=MS.gene064814.t1 |
| chr3.4 | exon | 98456412 | 98456682 | 98456412 | ID=MS.gene064814.t1.exon3;Parent=MS.gene064814.t1 |
| chr3.4 | CDS | 98456412 | 98456682 | 98456412 | ID=cds.MS.gene064814.t1;Parent=MS.gene064814.t1 |
| chr3.4 | exon | 98452697 | 98452799 | 98452697 | ID=MS.gene064814.t1.exon4;Parent=MS.gene064814.t1 |
| chr3.4 | CDS | 98452697 | 98452799 | 98452697 | ID=cds.MS.gene064814.t1;Parent=MS.gene064814.t1 |
| chr3.4 | exon | 98452255 | 98452600 | 98452255 | ID=MS.gene064814.t1.exon5;Parent=MS.gene064814.t1 |
| chr3.4 | CDS | 98452255 | 98452600 | 98452255 | ID=cds.MS.gene064814.t1;Parent=MS.gene064814.t1 |
| chr3.4 | exon | 98451554 | 98451919 | 98451554 | ID=MS.gene064814.t1.exon6;Parent=MS.gene064814.t1 |
| chr3.4 | CDS | 98451554 | 98451919 | 98451554 | ID=cds.MS.gene064814.t1;Parent=MS.gene064814.t1 |
| chr3.4 | exon | 98451235 | 98451313 | 98451235 | ID=MS.gene064814.t1.exon7;Parent=MS.gene064814.t1 |
| chr3.4 | CDS | 98451235 | 98451313 | 98451235 | ID=cds.MS.gene064814.t1;Parent=MS.gene064814.t1 |
| chr3.4 | exon | 98450736 | 98450948 | 98450736 | ID=MS.gene064814.t1.exon8;Parent=MS.gene064814.t1 |
| chr3.4 | CDS | 98450736 | 98450948 | 98450736 | ID=cds.MS.gene064814.t1;Parent=MS.gene064814.t1 |
| Gene Sequence |
| Protein sequence |