Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064858.t1 | XP_003603846.1 | 95.4 | 585 | 25 | 2 | 1 | 585 | 1 | 583 | 0.00E+00 | 1140.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064858.t1 | Q9FII2 | 57.5 | 588 | 221 | 12 | 1 | 585 | 2 | 563 | 9.8e-194 | 677.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064858.t1 | G7J5X9 | 95.4 | 585 | 25 | 2 | 1 | 585 | 1 | 583 | 0.0e+00 | 1140.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051720 | MS.gene064858 | 0.804959 | 1.68E-49 | -1.69E-46 |
| MS.gene052516 | MS.gene064858 | 0.814846 | 1.25E-51 | -1.69E-46 |
| MS.gene053144 | MS.gene064858 | 0.832743 | 7.94E-56 | -1.69E-46 |
| MS.gene054584 | MS.gene064858 | 0.820556 | 6.44E-53 | -1.69E-46 |
| MS.gene056308 | MS.gene064858 | 0.807866 | 4.10E-50 | -1.69E-46 |
| MS.gene05894 | MS.gene064858 | 0.816598 | 5.09E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064858.t1 | MTR_3g115870 | 97.607 | 585 | 12 | 2 | 1 | 585 | 1 | 583 | 0.0 | 1177 |
| MS.gene064858.t1 | MTR_3g032780 | 46.111 | 180 | 82 | 7 | 337 | 509 | 134 | 305 | 3.13e-32 | 127 |
| MS.gene064858.t1 | MTR_3g032780 | 31.217 | 189 | 67 | 6 | 109 | 287 | 23 | 158 | 6.10e-14 | 73.6 |
| MS.gene064858.t1 | MTR_1g096890 | 49.000 | 100 | 42 | 4 | 104 | 200 | 66 | 159 | 4.25e-20 | 87.8 |
| MS.gene064858.t1 | MTR_3g032830 | 41.481 | 135 | 49 | 4 | 144 | 278 | 31 | 135 | 2.89e-19 | 84.7 |
| MS.gene064858.t1 | MTR_2g019230 | 25.836 | 329 | 183 | 13 | 145 | 459 | 56 | 337 | 2.50e-13 | 72.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064858.t1 | AT5G42350 | 57.823 | 588 | 219 | 12 | 1 | 585 | 2 | 563 | 0.0 | 694 |
| MS.gene064858.t1 | AT5G42360 | 57.555 | 589 | 219 | 14 | 1 | 585 | 2 | 563 | 0.0 | 683 |
Find 135 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGACATAGAACGAGGTTTC+TGG | 0.203043 | 3.3:-94512126 | MS.gene064858:CDS |
| ACAAGGCTGTTAGAAAATTA+TGG | 0.209106 | 3.3:-94511973 | MS.gene064858:CDS |
| TGGGATTTCAGTCCATTTAT+TGG | 0.210827 | 3.3:+94512240 | None:intergenic |
| AAGAATAATAACAGAAGTTT+AGG | 0.215193 | 3.3:-94513333 | MS.gene064858:CDS |
| TGAAGCTTCTGTCTCATTAA+AGG | 0.220103 | 3.3:+94512414 | None:intergenic |
| GTCGAGATGTTCAAAATATT+TGG | 0.220382 | 3.3:-94511845 | MS.gene064858:CDS |
| TATTCTTCTTCCTCAACTTC+TGG | 0.240058 | 3.3:+94513349 | None:intergenic |
| CTCTGATGGCTTTGAGAACT+TGG | 0.265795 | 3.3:+94512535 | None:intergenic |
| ATGATTCTATCTCCAATAAA+TGG | 0.276427 | 3.3:-94512252 | MS.gene064858:CDS |
| TGCTAGATCAATTCCTATAC+TGG | 0.280796 | 3.3:-94512584 | MS.gene064858:CDS |
| ATGGGGTGAGAGATAGGTTT+TGG | 0.284109 | 3.3:-94513104 | MS.gene064858:CDS |
| GTGATAGCTGTTGGAGGTCT+TGG | 0.313867 | 3.3:-94512310 | MS.gene064858:CDS |
| CCAAAATCAAAAGGCAATCT+TGG | 0.323718 | 3.3:+94512220 | None:intergenic |
| AGAATAATAACAGAAGTTTA+GGG | 0.334053 | 3.3:-94513332 | MS.gene064858:CDS |
| GAAGATGATGATGATGTAAA+TGG | 0.345095 | 3.3:-94513306 | MS.gene064858:CDS |
| TGCGAAGGTGATGGTCAAAT+TGG | 0.346582 | 3.3:-94512004 | MS.gene064858:CDS |
| GTGCATTACTGCCACAGATT+TGG | 0.346897 | 3.3:+94511715 | None:intergenic |
| ATATCCCTTGCCTTCTTCAC+TGG | 0.349807 | 3.3:+94513176 | None:intergenic |
| CTGTTGGAGGTCTTGGATCT+TGG | 0.351613 | 3.3:-94512303 | MS.gene064858:CDS |
| TGTTCTAGCTTGACTAACTT+TGG | 0.359425 | 3.3:-94512700 | MS.gene064858:CDS |
| TGGATCTTGGGATGAGCCTC+TGG | 0.359515 | 3.3:-94512290 | MS.gene064858:CDS |
| GTCTACAACAGCAGTATCTT+GGG | 0.364959 | 3.3:+94513137 | None:intergenic |
| GTTGTAGACTGCTTCTCATA+TGG | 0.371643 | 3.3:-94513123 | MS.gene064858:CDS |
| TCTCATATGGGGTGAGAGAT+AGG | 0.373731 | 3.3:-94513110 | MS.gene064858:CDS |
| GTTCTAGCTTGACTAACTTT+GGG | 0.374792 | 3.3:-94512699 | MS.gene064858:CDS |
| AATCCATGGTTATTTCTGTT+TGG | 0.374857 | 3.3:-94512871 | MS.gene064858:CDS |
| GGGAGTCTTTGAAGTCAGTT+TGG | 0.376868 | 3.3:-94512563 | MS.gene064858:CDS |
| TGTTGGAGGTCTTGGATCTT+GGG | 0.387164 | 3.3:-94512302 | MS.gene064858:CDS |
| TTCCAGTCCATTGGGGCATC+AGG | 0.390853 | 3.3:+94511905 | None:intergenic |
| TTGTAGACTGCTTCTCATAT+GGG | 0.396000 | 3.3:-94513122 | MS.gene064858:CDS |
| AGTCTACAACAGCAGTATCT+TGG | 0.397671 | 3.3:+94513136 | None:intergenic |
| CAAGATGATATCTTCATTGT+TGG | 0.400840 | 3.3:-94512727 | MS.gene064858:CDS |
| CAAGGCTGTTAGAAAATTAT+GGG | 0.403762 | 3.3:-94511972 | MS.gene064858:CDS |
| ATACAGCATTCCAGTCCATT+GGG | 0.409548 | 3.3:+94511897 | None:intergenic |
| TTGGGATGAGCCTCTGGACT+CGG | 0.410836 | 3.3:-94512284 | MS.gene064858:CDS |
| GCTGACACTAGTGAAGAATT+AGG | 0.411961 | 3.3:-94513228 | MS.gene064858:CDS |
| AGAGCAAAAGCCATCTTTAA+CGG | 0.413452 | 3.3:+94512846 | None:intergenic |
| TTAGCCCCTTGACAAAATCT+TGG | 0.413630 | 3.3:-94512630 | MS.gene064858:CDS |
| ACCCCACCAATCTTCGATCT+TGG | 0.416311 | 3.3:+94512493 | None:intergenic |
| CTTCTCAGCTGGAGGAATCT+AGG | 0.424773 | 3.3:+94512910 | None:intergenic |
| CTGTTTGGTACCGTTAAAGA+TGG | 0.431191 | 3.3:-94512856 | MS.gene064858:CDS |
| GTGTGTCGAAACGTCTTGTT+AGG | 0.436949 | 3.3:-94513380 | MS.gene064858:CDS |
| CAAAATCAAAAGGCAATCTT+GGG | 0.439993 | 3.3:+94512221 | None:intergenic |
| TGATATTCTTGAAATGTGTT+TGG | 0.442464 | 3.3:-94513004 | MS.gene064858:CDS |
| CCCAAACTTGTATCTTCAAA+AGG | 0.445947 | 3.3:-94512055 | MS.gene064858:CDS |
| ATGTCTAAGTCTGTATGGTC+GGG | 0.446356 | 3.3:-94513271 | MS.gene064858:CDS |
| CGGGGTGGAGGTTGCAAGGT+AGG | 0.447498 | 3.3:-94513252 | MS.gene064858:CDS |
| CGTCTCATCGAAAGCTTATG+AGG | 0.451222 | 3.3:+94512451 | None:intergenic |
| CACATTTCAAGAATATCATC+TGG | 0.462231 | 3.3:+94513009 | None:intergenic |
| TTAAAATGTCTAAGTCTGTA+TGG | 0.463105 | 3.3:-94513276 | MS.gene064858:CDS |
| ATCCTGATGCCCCAATGGAC+TGG | 0.466397 | 3.3:-94511907 | MS.gene064858:CDS |
| GCTTGTTCTGGGGTTGTATG+TGG | 0.472247 | 3.3:-94512193 | MS.gene064858:CDS |
| CTAGATTCCTCCAGCTGAGA+AGG | 0.479024 | 3.3:-94512909 | MS.gene064858:CDS |
| CAAAATATTTGGCCAGGTGT+TGG | 0.480058 | 3.3:-94511834 | MS.gene064858:CDS |
| CTTGACTAACTTTGGGAATG+TGG | 0.480411 | 3.3:-94512692 | MS.gene064858:CDS |
| ACAAGCCCTCCCTTCTCAGC+TGG | 0.484387 | 3.3:+94512899 | None:intergenic |
| AGATCTAGTTCCAGTGAAGA+AGG | 0.484722 | 3.3:-94513186 | MS.gene064858:CDS |
| AGTCTGTATGGTCGGGGTGG+AGG | 0.485366 | 3.3:-94513264 | MS.gene064858:CDS |
| TTCATCATTGTCTAGTAGAA+AGG | 0.486255 | 3.3:-94512395 | MS.gene064858:CDS |
| CAAACTGGAATCATATTTCA+AGG | 0.495507 | 3.3:-94511778 | MS.gene064858:CDS |
| ACTTCAAAGACTCCCAGTAT+AGG | 0.496120 | 3.3:+94512571 | None:intergenic |
| ATGTGACTGATATGTCAAAC+TGG | 0.499848 | 3.3:-94511793 | MS.gene064858:CDS |
| CTCTGGTGAGATACATGCAT+TGG | 0.502521 | 3.3:-94512827 | MS.gene064858:CDS |
| CAAGCAATCCCAAAATCAAA+AGG | 0.504738 | 3.3:+94512211 | None:intergenic |
| AATGTCTAAGTCTGTATGGT+CGG | 0.505704 | 3.3:-94513272 | MS.gene064858:CDS |
| GATGTTCAAAATATTTGGCC+AGG | 0.508249 | 3.3:-94511840 | MS.gene064858:CDS |
| GTCTGTCCTGCCGACTCTGA+TGG | 0.511999 | 3.3:+94512521 | None:intergenic |
| ATGTACAGAGACTTCAGTCC+AGG | 0.516456 | 3.3:+94511928 | None:intergenic |
| TGGGATGAGCCTCTGGACTC+GGG | 0.518314 | 3.3:-94512283 | MS.gene064858:CDS |
| TTCCAAGATCGAAGATTGGT+GGG | 0.519154 | 3.3:-94512495 | MS.gene064858:CDS |
| AGAAGGCAAGGGATATAAAC+CGG | 0.520228 | 3.3:-94513169 | MS.gene064858:CDS |
| AATACAGCATTCCAGTCCAT+TGG | 0.520453 | 3.3:+94511896 | None:intergenic |
| GATGATATCTTCATTGTTGG+AGG | 0.522513 | 3.3:-94512724 | MS.gene064858:CDS |
| ACAACGAGATTCTTCTGCCC+CGG | 0.522690 | 3.3:+94513428 | None:intergenic |
| GAACCATGTCACTCATGAGC+TGG | 0.523197 | 3.3:-94511756 | MS.gene064858:CDS |
| TGGATGTGTCTCAGAATCAA+TGG | 0.525881 | 3.3:-94512807 | MS.gene064858:CDS |
| GAATCTAGGTGTGGTGGTCA+AGG | 0.526973 | 3.3:+94512924 | None:intergenic |
| GCGAAGGTGATGGTCAAATT+GGG | 0.531631 | 3.3:-94512003 | MS.gene064858:CDS |
| TTCCTCCAGCTGAGAAGGGA+GGG | 0.533740 | 3.3:-94512904 | MS.gene064858:CDS |
| TGTTCATGCTCTCCGTGTCA+TGG | 0.534966 | 3.3:-94512027 | MS.gene064858:CDS |
| GTATCTTGGGGACCACAAAC+CGG | 0.535061 | 3.3:+94513150 | None:intergenic |
| GGACTGGAATGCTGTATTTG+TGG | 0.537265 | 3.3:-94511891 | MS.gene064858:CDS |
| AAGGGATATAAACCGGTTTG+TGG | 0.541362 | 3.3:-94513162 | MS.gene064858:CDS |
| TGGTCGGGGTGGAGGTTGCA+AGG | 0.541770 | 3.3:-94513256 | MS.gene064858:CDS |
| CAAGTTCAGAATTCTTTCTG+TGG | 0.549015 | 3.3:+94513073 | None:intergenic |
| TCATGTACACGAGGTGGGAT+CGG | 0.551178 | 3.3:+94512085 | None:intergenic |
| TCAAATTGGGCGCCGAAACA+AGG | 0.554063 | 3.3:-94511990 | MS.gene064858:CDS |
| TGTACATCCTGATGCCCCAA+TGG | 0.556992 | 3.3:-94511912 | MS.gene064858:CDS |
| GTGTCATGGTGCGAAGGTGA+TGG | 0.563001 | 3.3:-94512013 | MS.gene064858:CDS |
| TAGATCTCATGTATCTTACC+TGG | 0.568444 | 3.3:-94511946 | MS.gene064858:CDS |
| TCAAAGCCATCAGAGTCGGC+AGG | 0.570392 | 3.3:-94512527 | MS.gene064858:CDS |
| GGAGTGTCAGCCAGAAGTTG+AGG | 0.573267 | 3.3:-94513359 | MS.gene064858:CDS |
| TAGTTCCAGTGAAGAAGGCA+AGG | 0.575434 | 3.3:-94513181 | MS.gene064858:CDS |
| TGTCTCAGAATCAATGGCAT+AGG | 0.576749 | 3.3:-94512801 | MS.gene064858:CDS |
| CAATGGCATAGGATCGAGGC+TGG | 0.578406 | 3.3:-94512790 | MS.gene064858:CDS |
| GCTCATTCAAGACGCACAGA+GGG | 0.579808 | 3.3:-94512663 | MS.gene064858:CDS |
| TTTCCAAGATCGAAGATTGG+TGG | 0.582976 | 3.3:-94512496 | MS.gene064858:CDS |
| GCTAGATCAATTCCTATACT+GGG | 0.584021 | 3.3:-94512583 | MS.gene064858:CDS |
| CTAACTTTGGGAATGTGGAT+CGG | 0.584910 | 3.3:-94512687 | MS.gene064858:CDS |
| TAGATTCCTCCAGCTGAGAA+GGG | 0.585115 | 3.3:-94512908 | MS.gene064858:CDS |
| TAGGAGATTCGAGCACGAGA+AGG | 0.595412 | 3.3:-94513209 | MS.gene064858:CDS |
| GTTCTCAAAGCCATCAGAGT+CGG | 0.597147 | 3.3:-94512531 | MS.gene064858:CDS |
| TTCTTGAAATGTGTTTGGTG+AGG | 0.598539 | 3.3:-94512999 | MS.gene064858:CDS |
| ATCATCTTGTACACTAGCAA+CGG | 0.599730 | 3.3:+94512741 | None:intergenic |
| CTCTCCGTGTCATGGTGCGA+AGG | 0.600634 | 3.3:-94512019 | MS.gene064858:CDS |
| CAGCTGGAGGAATCTAGGTG+TGG | 0.604486 | 3.3:+94512915 | None:intergenic |
| ATTCCTCCAGCTGAGAAGGG+AGG | 0.604833 | 3.3:-94512905 | MS.gene064858:CDS |
| ATGATATCTTCATTGTTGGA+GGG | 0.604868 | 3.3:-94512723 | MS.gene064858:CDS |
| CATGTCACTCATGAGCTGGA+TGG | 0.605014 | 3.3:-94511752 | MS.gene064858:CDS |
| AGCCCTCCCTTCTCAGCTGG+AGG | 0.607915 | 3.3:+94512902 | None:intergenic |
| CTGGAGGAATCTAGGTGTGG+TGG | 0.609056 | 3.3:+94512918 | None:intergenic |
| AGGGCTTGTATCAAAATCCA+TGG | 0.610481 | 3.3:-94512885 | MS.gene064858:CDS |
| TGTAGACTGCTTCTCATATG+GGG | 0.611271 | 3.3:-94513121 | MS.gene064858:CDS |
| TGTCTAAGTCTGTATGGTCG+GGG | 0.611593 | 3.3:-94513270 | MS.gene064858:CDS |
| ATCACCTTCGCACCATGACA+CGG | 0.615387 | 3.3:+94512015 | None:intergenic |
| GAATAATAACAGAAGTTTAG+GGG | 0.615388 | 3.3:-94513331 | MS.gene064858:CDS |
| TCCAAGATCGAAGATTGGTG+GGG | 0.617033 | 3.3:-94512494 | MS.gene064858:CDS |
| TGGGGTATCAGACGTCTATG+AGG | 0.619349 | 3.3:-94512476 | MS.gene064858:CDS |
| CTAAGTCTGTATGGTCGGGG+TGG | 0.623244 | 3.3:-94513267 | MS.gene064858:CDS |
| CATCCAGCTCATGAGTGACA+TGG | 0.631026 | 3.3:+94511753 | None:intergenic |
| AGTACTCATGTACACGAGGT+GGG | 0.635968 | 3.3:+94512080 | None:intergenic |
| GCATTCATCAAACTTGTCAA+CGG | 0.641767 | 3.3:+94512973 | None:intergenic |
| GAATCAATGGCATAGGATCG+AGG | 0.652526 | 3.3:-94512794 | MS.gene064858:CDS |
| TACAGCATTCCAGTCCATTG+GGG | 0.663088 | 3.3:+94511898 | None:intergenic |
| TAGTACTCATGTACACGAGG+TGG | 0.667289 | 3.3:+94512079 | None:intergenic |
| TATATTTCTCCCGAGTCCAG+AGG | 0.671151 | 3.3:+94512274 | None:intergenic |
| GTACCAAACAGAAATAACCA+TGG | 0.672413 | 3.3:+94512868 | None:intergenic |
| AGTTCCAGTGAAGAAGGCAA+GGG | 0.675538 | 3.3:-94513180 | MS.gene064858:CDS |
| TCTACAACAGCAGTATCTTG+GGG | 0.685630 | 3.3:+94513138 | None:intergenic |
| AGCTCATTCAAGACGCACAG+AGG | 0.685959 | 3.3:-94512664 | MS.gene064858:CDS |
| TACACGAGGTGGGATCGGAG+TGG | 0.686719 | 3.3:+94512090 | None:intergenic |
| ATCGTGTGTGACCAAATCTG+TGG | 0.695110 | 3.3:-94511726 | MS.gene064858:CDS |
| CTCATTCAAGACGCACAGAG+GGG | 0.717390 | 3.3:-94512662 | MS.gene064858:CDS |
| GGGTAGTACTCATGTACACG+AGG | 0.729419 | 3.3:+94512076 | None:intergenic |
| GCTGCATATGACATAGAACG+AGG | 0.730980 | 3.3:-94512133 | MS.gene064858:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGAATAATAACAGAAGTTT+AGG | - | chr3.3:94511820-94511839 | MS.gene064858:CDS | 20.0% |
| !! | AGAATAATAACAGAAGTTTA+GGG | - | chr3.3:94511821-94511840 | MS.gene064858:CDS | 20.0% |
| !!! | TCCAAAAATCAAGTTTTTAT+CGG | + | chr3.3:94513288-94513307 | None:intergenic | 20.0% |
| ! | ATGATTCTATCTCCAATAAA+TGG | - | chr3.3:94512901-94512920 | MS.gene064858:CDS | 25.0% |
| ! | GAATAATAACAGAAGTTTAG+GGG | - | chr3.3:94511822-94511841 | MS.gene064858:CDS | 25.0% |
| ! | TGATATTCTTGAAATGTGTT+TGG | - | chr3.3:94512149-94512168 | MS.gene064858:CDS | 25.0% |
| ! | TTAAAATGTCTAAGTCTGTA+TGG | - | chr3.3:94511877-94511896 | MS.gene064858:CDS | 25.0% |
| ACAAGGCTGTTAGAAAATTA+TGG | - | chr3.3:94513180-94513199 | MS.gene064858:CDS | 30.0% | |
| ATGATATCTTCATTGTTGGA+GGG | - | chr3.3:94512430-94512449 | MS.gene064858:CDS | 30.0% | |
| CAAAATCAAAAGGCAATCTT+GGG | + | chr3.3:94512935-94512954 | None:intergenic | 30.0% | |
| CAAACTGGAATCATATTTCA+AGG | - | chr3.3:94513375-94513394 | MS.gene064858:CDS | 30.0% | |
| CAAGATGATATCTTCATTGT+TGG | - | chr3.3:94512426-94512445 | MS.gene064858:CDS | 30.0% | |
| CAAGGCTGTTAGAAAATTAT+GGG | - | chr3.3:94513181-94513200 | MS.gene064858:CDS | 30.0% | |
| CACATTTCAAGAATATCATC+TGG | + | chr3.3:94512147-94512166 | None:intergenic | 30.0% | |
| GTCGAGATGTTCAAAATATT+TGG | - | chr3.3:94513308-94513327 | MS.gene064858:CDS | 30.0% | |
| TTCATCATTGTCTAGTAGAA+AGG | - | chr3.3:94512758-94512777 | MS.gene064858:CDS | 30.0% | |
| ! | AAAGAGTAGTCGAAGATTTT+TGG | - | chr3.3:94512821-94512840 | MS.gene064858:CDS | 30.0% |
| ! | GAAGATGATGATGATGTAAA+TGG | - | chr3.3:94511847-94511866 | MS.gene064858:CDS | 30.0% |
| ! | GCCGATAAAAACTTGATTTT+TGG | - | chr3.3:94513284-94513303 | MS.gene064858:CDS | 30.0% |
| !! | AATCCATGGTTATTTCTGTT+TGG | - | chr3.3:94512282-94512301 | MS.gene064858:CDS | 30.0% |
| !! | ACCTTTTGAAGATACAAGTT+TGG | + | chr3.3:94513102-94513121 | None:intergenic | 30.0% |
| !! | CCTTTTGAAGATACAAGTTT+GGG | + | chr3.3:94513101-94513120 | None:intergenic | 30.0% |
| !! | CTTTTGAAGATACAAGTTTG+GGG | + | chr3.3:94513100-94513119 | None:intergenic | 30.0% |
| !!! | ATTTTCTAACAGCCTTGTTT+CGG | + | chr3.3:94513178-94513197 | None:intergenic | 30.0% |
| !!! | CAAGATTGCCTTTTGATTTT+GGG | - | chr3.3:94512934-94512953 | MS.gene064858:CDS | 30.0% |
| !!! | TCCATTTTTTGCAAACAAGT+CGG | + | chr3.3:94512206-94512225 | None:intergenic | 30.0% |
| AATGTCTAAGTCTGTATGGT+CGG | - | chr3.3:94511881-94511900 | MS.gene064858:CDS | 35.0% | |
| AGAGCAAAAGCCATCTTTAA+CGG | + | chr3.3:94512310-94512329 | None:intergenic | 35.0% | |
| ATCATCTTGTACACTAGCAA+CGG | + | chr3.3:94512415-94512434 | None:intergenic | 35.0% | |
| ATGTGACTGATATGTCAAAC+TGG | - | chr3.3:94513360-94513379 | MS.gene064858:CDS | 35.0% | |
| CAAGCAATCCCAAAATCAAA+AGG | + | chr3.3:94512945-94512964 | None:intergenic | 35.0% | |
| CAAGTTCAGAATTCTTTCTG+TGG | + | chr3.3:94512083-94512102 | None:intergenic | 35.0% | |
| CCAAAATCAAAAGGCAATCT+TGG | + | chr3.3:94512936-94512955 | None:intergenic | 35.0% | |
| CCCAAACTTGTATCTTCAAA+AGG | - | chr3.3:94513098-94513117 | MS.gene064858:CDS | 35.0% | |
| GATGATATCTTCATTGTTGG+AGG | - | chr3.3:94512429-94512448 | MS.gene064858:CDS | 35.0% | |
| GATGTTCAAAATATTTGGCC+AGG | - | chr3.3:94513313-94513332 | MS.gene064858:CDS | 35.0% | |
| GCATTCATCAAACTTGTCAA+CGG | + | chr3.3:94512183-94512202 | None:intergenic | 35.0% | |
| GCTAGATCAATTCCTATACT+GGG | - | chr3.3:94512570-94512589 | MS.gene064858:CDS | 35.0% | |
| GTACCAAACAGAAATAACCA+TGG | + | chr3.3:94512288-94512307 | None:intergenic | 35.0% | |
| TAGATCTCATGTATCTTACC+TGG | - | chr3.3:94513207-94513226 | MS.gene064858:CDS | 35.0% | |
| TATTCTTCTTCCTCAACTTC+TGG | + | chr3.3:94511807-94511826 | None:intergenic | 35.0% | |
| TGAAGCTTCTGTCTCATTAA+AGG | + | chr3.3:94512742-94512761 | None:intergenic | 35.0% | |
| TGCTAGATCAATTCCTATAC+TGG | - | chr3.3:94512569-94512588 | MS.gene064858:CDS | 35.0% | |
| TGGGATTTCAGTCCATTTAT+TGG | + | chr3.3:94512916-94512935 | None:intergenic | 35.0% | |
| TTGTAGACTGCTTCTCATAT+GGG | - | chr3.3:94512031-94512050 | MS.gene064858:CDS | 35.0% | |
| ! | CGTTGTCAACAAGATTTTCA+CGG | - | chr3.3:94511742-94511761 | MS.gene064858:CDS | 35.0% |
| ! | GACTTGTTTGCAAAAAATGG+AGG | - | chr3.3:94512205-94512224 | MS.gene064858:CDS | 35.0% |
| ! | TTACGCCAAGATTTTGTCAA+GGG | + | chr3.3:94512531-94512550 | None:intergenic | 35.0% |
| ! | TTCTTGAAATGTGTTTGGTG+AGG | - | chr3.3:94512154-94512173 | MS.gene064858:CDS | 35.0% |
| ! | TTTACGCCAAGATTTTGTCA+AGG | + | chr3.3:94512532-94512551 | None:intergenic | 35.0% |
| !! | GTTCTAGCTTGACTAACTTT+GGG | - | chr3.3:94512454-94512473 | MS.gene064858:CDS | 35.0% |
| !! | TGTTCTAGCTTGACTAACTT+TGG | - | chr3.3:94512453-94512472 | MS.gene064858:CDS | 35.0% |
| !!! | AGATTTTTGGTGATAGCTGT+TGG | - | chr3.3:94512834-94512853 | MS.gene064858:CDS | 35.0% |
| !!! | ATTTTGGGATTGCTTGTTCT+GGG | - | chr3.3:94512949-94512968 | MS.gene064858:CDS | 35.0% |
| !!! | CCAAGATTGCCTTTTGATTT+TGG | - | chr3.3:94512933-94512952 | MS.gene064858:CDS | 35.0% |
| !!! | CCATTTTTTGCAAACAAGTC+GGG | + | chr3.3:94512205-94512224 | None:intergenic | 35.0% |
| AATACAGCATTCCAGTCCAT+TGG | + | chr3.3:94513260-94513279 | None:intergenic | 40.0% | |
| ACTTCAAAGACTCCCAGTAT+AGG | + | chr3.3:94512585-94512604 | None:intergenic | 40.0% | |
| AGAAGGCAAGGGATATAAAC+CGG | - | chr3.3:94511984-94512003 | MS.gene064858:CDS | 40.0% | |
| AGGGCTTGTATCAAAATCCA+TGG | - | chr3.3:94512268-94512287 | MS.gene064858:CDS | 40.0% | |
| AGTCTACAACAGCAGTATCT+TGG | + | chr3.3:94512020-94512039 | None:intergenic | 40.0% | |
| ATACAGCATTCCAGTCCATT+GGG | + | chr3.3:94513259-94513278 | None:intergenic | 40.0% | |
| ATGACATAGAACGAGGTTTC+TGG | - | chr3.3:94513027-94513046 | MS.gene064858:CDS | 40.0% | |
| ATGTCTAAGTCTGTATGGTC+GGG | - | chr3.3:94511882-94511901 | MS.gene064858:CDS | 40.0% | |
| CAAAATATTTGGCCAGGTGT+TGG | - | chr3.3:94513319-94513338 | MS.gene064858:CDS | 40.0% | |
| CAGTGAAAAAATCCAACACC+TGG | + | chr3.3:94513334-94513353 | None:intergenic | 40.0% | |
| CTGTTTGGTACCGTTAAAGA+TGG | - | chr3.3:94512297-94512316 | MS.gene064858:CDS | 40.0% | |
| GCTGACACTAGTGAAGAATT+AGG | - | chr3.3:94511925-94511944 | MS.gene064858:CDS | 40.0% | |
| GTCTACAACAGCAGTATCTT+GGG | + | chr3.3:94512019-94512038 | None:intergenic | 40.0% | |
| GTTGTAGACTGCTTCTCATA+TGG | - | chr3.3:94512030-94512049 | MS.gene064858:CDS | 40.0% | |
| TCTACAACAGCAGTATCTTG+GGG | + | chr3.3:94512018-94512037 | None:intergenic | 40.0% | |
| TGGATGTGTCTCAGAATCAA+TGG | - | chr3.3:94512346-94512365 | MS.gene064858:CDS | 40.0% | |
| TGTAGACTGCTTCTCATATG+GGG | - | chr3.3:94512032-94512051 | MS.gene064858:CDS | 40.0% | |
| TGTCTCAGAATCAATGGCAT+AGG | - | chr3.3:94512352-94512371 | MS.gene064858:CDS | 40.0% | |
| TTAGCCCCTTGACAAAATCT+TGG | - | chr3.3:94512523-94512542 | MS.gene064858:CDS | 40.0% | |
| TTCCAAGATCGAAGATTGGT+GGG | - | chr3.3:94512658-94512677 | MS.gene064858:CDS | 40.0% | |
| TTTCCAAGATCGAAGATTGG+TGG | - | chr3.3:94512657-94512676 | MS.gene064858:CDS | 40.0% | |
| ! | AGATCTAGTTCCAGTGAAGA+AGG | - | chr3.3:94511967-94511986 | MS.gene064858:CDS | 40.0% |
| ! | CCCGACTTGTTTGCAAAAAA+TGG | - | chr3.3:94512202-94512221 | MS.gene064858:CDS | 40.0% |
| ! | CGTTTTCCAAGATCGAAGAT+TGG | - | chr3.3:94512654-94512673 | MS.gene064858:CDS | 40.0% |
| ! | CTAACTTTGGGAATGTGGAT+CGG | - | chr3.3:94512466-94512485 | MS.gene064858:CDS | 40.0% |
| ! | CTTGACTAACTTTGGGAATG+TGG | - | chr3.3:94512461-94512480 | MS.gene064858:CDS | 40.0% |
| ! | GTTAAAGATGGCTTTTGCTC+TGG | - | chr3.3:94512309-94512328 | MS.gene064858:CDS | 40.0% |
| ! | TACGCCAAGATTTTGTCAAG+GGG | + | chr3.3:94512530-94512549 | None:intergenic | 40.0% |
| !! | AAGGGATATAAACCGGTTTG+TGG | - | chr3.3:94511991-94512010 | MS.gene064858:CDS | 40.0% |
| !! | TTTTTGGTGATAGCTGTTGG+AGG | - | chr3.3:94512837-94512856 | MS.gene064858:CDS | 40.0% |
| !!! | GATTTTGGGATTGCTTGTTC+TGG | - | chr3.3:94512948-94512967 | MS.gene064858:CDS | 40.0% |
| !!! | TTTTGGGATTGCTTGTTCTG+GGG | - | chr3.3:94512950-94512969 | MS.gene064858:CDS | 40.0% |
| AGTACTCATGTACACGAGGT+GGG | + | chr3.3:94513076-94513095 | None:intergenic | 45.0% | |
| AGTTCCAGTGAAGAAGGCAA+GGG | - | chr3.3:94511973-94511992 | MS.gene064858:CDS | 45.0% | |
| ATATCCCTTGCCTTCTTCAC+TGG | + | chr3.3:94511980-94511999 | None:intergenic | 45.0% | |
| ATCGTGTGTGACCAAATCTG+TGG | - | chr3.3:94513427-94513446 | MS.gene064858:CDS | 45.0% | |
| ATGTACAGAGACTTCAGTCC+AGG | + | chr3.3:94513228-94513247 | None:intergenic | 45.0% | |
| CGTCTCATCGAAAGCTTATG+AGG | + | chr3.3:94512705-94512724 | None:intergenic | 45.0% | |
| CTCTGGTGAGATACATGCAT+TGG | - | chr3.3:94512326-94512345 | MS.gene064858:CDS | 45.0% | |
| GAATCAATGGCATAGGATCG+AGG | - | chr3.3:94512359-94512378 | MS.gene064858:CDS | 45.0% | |
| GCTGCATATGACATAGAACG+AGG | - | chr3.3:94513020-94513039 | MS.gene064858:CDS | 45.0% | |
| GGACTGGAATGCTGTATTTG+TGG | - | chr3.3:94513262-94513281 | MS.gene064858:CDS | 45.0% | |
| GTGCATTACTGCCACAGATT+TGG | + | chr3.3:94513441-94513460 | None:intergenic | 45.0% | |
| GTTCTCAAAGCCATCAGAGT+CGG | - | chr3.3:94512622-94512641 | MS.gene064858:CDS | 45.0% | |
| TACAGCATTCCAGTCCATTG+GGG | + | chr3.3:94513258-94513277 | None:intergenic | 45.0% | |
| TAGATTCCTCCAGCTGAGAA+GGG | - | chr3.3:94512245-94512264 | MS.gene064858:CDS | 45.0% | |
| TAGTACTCATGTACACGAGG+TGG | + | chr3.3:94513077-94513096 | None:intergenic | 45.0% | |
| TAGTTCCAGTGAAGAAGGCA+AGG | - | chr3.3:94511972-94511991 | MS.gene064858:CDS | 45.0% | |
| TATATTTCTCCCGAGTCCAG+AGG | + | chr3.3:94512882-94512901 | None:intergenic | 45.0% | |
| TCCAAGATCGAAGATTGGTG+GGG | - | chr3.3:94512659-94512678 | MS.gene064858:CDS | 45.0% | |
| TCTCATATGGGGTGAGAGAT+AGG | - | chr3.3:94512043-94512062 | MS.gene064858:CDS | 45.0% | |
| TGTCTAAGTCTGTATGGTCG+GGG | - | chr3.3:94511883-94511902 | MS.gene064858:CDS | 45.0% | |
| TGTTGGAGGTCTTGGATCTT+GGG | - | chr3.3:94512851-94512870 | MS.gene064858:CDS | 45.0% | |
| ! | ATGGGGTGAGAGATAGGTTT+TGG | - | chr3.3:94512049-94512068 | MS.gene064858:CDS | 45.0% |
| ! | GCGAAGGTGATGGTCAAATT+GGG | - | chr3.3:94513150-94513169 | MS.gene064858:CDS | 45.0% |
| ! | GTGTGTCGAAACGTCTTGTT+AGG | - | chr3.3:94511773-94511792 | MS.gene064858:CDS | 45.0% |
| ! | TGCGAAGGTGATGGTCAAAT+TGG | - | chr3.3:94513149-94513168 | MS.gene064858:CDS | 45.0% |
| !! | CTCTGATGGCTTTGAGAACT+TGG | + | chr3.3:94512621-94512640 | None:intergenic | 45.0% |
| !! | GGGAGTCTTTGAAGTCAGTT+TGG | - | chr3.3:94512590-94512609 | MS.gene064858:CDS | 45.0% |
| ACAACGAGATTCTTCTGCCC+CGG | + | chr3.3:94511728-94511747 | None:intergenic | 50.0% | |
| ACCCCACCAATCTTCGATCT+TGG | + | chr3.3:94512663-94512682 | None:intergenic | 50.0% | |
| AGCTCATTCAAGACGCACAG+AGG | - | chr3.3:94512489-94512508 | MS.gene064858:CDS | 50.0% | |
| ATCACCTTCGCACCATGACA+CGG | + | chr3.3:94513141-94513160 | None:intergenic | 50.0% | |
| CATCCAGCTCATGAGTGACA+TGG | + | chr3.3:94513403-94513422 | None:intergenic | 50.0% | |
| CATGTCACTCATGAGCTGGA+TGG | - | chr3.3:94513401-94513420 | MS.gene064858:CDS | 50.0% | |
| CTAGATTCCTCCAGCTGAGA+AGG | - | chr3.3:94512244-94512263 | MS.gene064858:CDS | 50.0% | |
| CTCATTCAAGACGCACAGAG+GGG | - | chr3.3:94512491-94512510 | MS.gene064858:CDS | 50.0% | |
| CTGTTGGAGGTCTTGGATCT+TGG | - | chr3.3:94512850-94512869 | MS.gene064858:CDS | 50.0% | |
| CTTCTCAGCTGGAGGAATCT+AGG | + | chr3.3:94512246-94512265 | None:intergenic | 50.0% | |
| GAACCATGTCACTCATGAGC+TGG | - | chr3.3:94513397-94513416 | MS.gene064858:CDS | 50.0% | |
| GAATCTAGGTGTGGTGGTCA+AGG | + | chr3.3:94512232-94512251 | None:intergenic | 50.0% | |
| GCTCATTCAAGACGCACAGA+GGG | - | chr3.3:94512490-94512509 | MS.gene064858:CDS | 50.0% | |
| GGGTAGTACTCATGTACACG+AGG | + | chr3.3:94513080-94513099 | None:intergenic | 50.0% | |
| GTATCTTGGGGACCACAAAC+CGG | + | chr3.3:94512006-94512025 | None:intergenic | 50.0% | |
| GTGATAGCTGTTGGAGGTCT+TGG | - | chr3.3:94512843-94512862 | MS.gene064858:CDS | 50.0% | |
| TAGGAGATTCGAGCACGAGA+AGG | - | chr3.3:94511944-94511963 | MS.gene064858:CDS | 50.0% | |
| TCATGTACACGAGGTGGGAT+CGG | + | chr3.3:94513071-94513090 | None:intergenic | 50.0% | |
| TGTACATCCTGATGCCCCAA+TGG | - | chr3.3:94513241-94513260 | MS.gene064858:CDS | 50.0% | |
| TGTTCATGCTCTCCGTGTCA+TGG | - | chr3.3:94513126-94513145 | MS.gene064858:CDS | 50.0% | |
| ! | TGGGGTATCAGACGTCTATG+AGG | - | chr3.3:94512677-94512696 | MS.gene064858:CDS | 50.0% |
| !! | GCTTGTTCTGGGGTTGTATG+TGG | - | chr3.3:94512960-94512979 | MS.gene064858:CDS | 50.0% |
| !! | GGGTGAGAGATAGGTTTTGG+AGG | - | chr3.3:94512052-94512071 | MS.gene064858:CDS | 50.0% |
| !! | TCAAATTGGGCGCCGAAACA+AGG | - | chr3.3:94513163-94513182 | MS.gene064858:CDS | 50.0% |
| !!! | AGGCTGGTTTTCTCAGAGGA+AGG | - | chr3.3:94512379-94512398 | MS.gene064858:CDS | 50.0% |
| !!! | ATCGAGGCTGGTTTTCTCAG+AGG | - | chr3.3:94512375-94512394 | MS.gene064858:CDS | 50.0% |
| ATCCTGATGCCCCAATGGAC+TGG | - | chr3.3:94513246-94513265 | MS.gene064858:CDS | 55.0% | |
| ATTCCTCCAGCTGAGAAGGG+AGG | - | chr3.3:94512248-94512267 | MS.gene064858:CDS | 55.0% | |
| CAATGGCATAGGATCGAGGC+TGG | - | chr3.3:94512363-94512382 | MS.gene064858:CDS | 55.0% | |
| CAGCTGGAGGAATCTAGGTG+TGG | + | chr3.3:94512241-94512260 | None:intergenic | 55.0% | |
| CTAAGTCTGTATGGTCGGGG+TGG | - | chr3.3:94511886-94511905 | MS.gene064858:CDS | 55.0% | |
| CTGGAGGAATCTAGGTGTGG+TGG | + | chr3.3:94512238-94512257 | None:intergenic | 55.0% | |
| GTGTCATGGTGCGAAGGTGA+TGG | - | chr3.3:94513140-94513159 | MS.gene064858:CDS | 55.0% | |
| TCAAAGCCATCAGAGTCGGC+AGG | - | chr3.3:94512626-94512645 | MS.gene064858:CDS | 55.0% | |
| TGGATCTTGGGATGAGCCTC+TGG | - | chr3.3:94512863-94512882 | MS.gene064858:CDS | 55.0% | |
| TTCCTCCAGCTGAGAAGGGA+GGG | - | chr3.3:94512249-94512268 | MS.gene064858:CDS | 55.0% | |
| TTGGGATGAGCCTCTGGACT+CGG | - | chr3.3:94512869-94512888 | MS.gene064858:CDS | 55.0% | |
| ! | GGAGTGTCAGCCAGAAGTTG+AGG | - | chr3.3:94511794-94511813 | MS.gene064858:CDS | 55.0% |
| ! | TTCCAGTCCATTGGGGCATC+AGG | + | chr3.3:94513251-94513270 | None:intergenic | 55.0% |
| ACAAGCCCTCCCTTCTCAGC+TGG | + | chr3.3:94512257-94512276 | None:intergenic | 60.0% | |
| AGTCTGTATGGTCGGGGTGG+AGG | - | chr3.3:94511889-94511908 | MS.gene064858:CDS | 60.0% | |
| CTCTCCGTGTCATGGTGCGA+AGG | - | chr3.3:94513134-94513153 | MS.gene064858:CDS | 60.0% | |
| TACACGAGGTGGGATCGGAG+TGG | + | chr3.3:94513066-94513085 | None:intergenic | 60.0% | |
| TGGGATGAGCCTCTGGACTC+GGG | - | chr3.3:94512870-94512889 | MS.gene064858:CDS | 60.0% | |
| !! | GTCTGTCCTGCCGACTCTGA+TGG | + | chr3.3:94512635-94512654 | None:intergenic | 60.0% |
| AGCCCTCCCTTCTCAGCTGG+AGG | + | chr3.3:94512254-94512273 | None:intergenic | 65.0% | |
| CGGGGTGGAGGTTGCAAGGT+AGG | - | chr3.3:94511901-94511920 | MS.gene064858:CDS | 65.0% | |
| TGGTCGGGGTGGAGGTTGCA+AGG | - | chr3.3:94511897-94511916 | MS.gene064858:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 94511709 | 94513466 | 94511709 | ID=MS.gene064858 |
| chr3.3 | mRNA | 94511709 | 94513466 | 94511709 | ID=MS.gene064858.t1;Parent=MS.gene064858 |
| chr3.3 | exon | 94511709 | 94513466 | 94511709 | ID=MS.gene064858.t1.exon1;Parent=MS.gene064858.t1 |
| chr3.3 | CDS | 94511709 | 94513466 | 94511709 | ID=cds.MS.gene064858.t1;Parent=MS.gene064858.t1 |
| Gene Sequence |
| Protein sequence |
