Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064960.t1 | XP_013467157.1 | 95.1 | 429 | 19 | 1 | 1 | 429 | 1 | 427 | 1.50E-235 | 825.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064960.t1 | Q9NRX5 | 25.7 | 366 | 219 | 8 | 99 | 413 | 90 | 453 | 3.1e-27 | 124.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064960.t1 | A0A072VIB5 | 95.1 | 429 | 19 | 1 | 1 | 429 | 1 | 427 | 1.1e-235 | 825.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene05930 | MS.gene064960 | PPI |
| MS.gene04773 | MS.gene064960 | PPI |
| MS.gene049133 | MS.gene064960 | PPI |
| MS.gene015739 | MS.gene064960 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064960.t1 | MTR_1g046480 | 95.105 | 429 | 19 | 1 | 1 | 429 | 1 | 427 | 0.0 | 818 |
| MS.gene064960.t1 | MTR_8g103740 | 51.831 | 355 | 168 | 3 | 51 | 404 | 34 | 386 | 2.37e-126 | 372 |
| MS.gene064960.t1 | MTR_6g086060 | 49.202 | 376 | 185 | 5 | 43 | 414 | 28 | 401 | 2.08e-125 | 369 |
| MS.gene064960.t1 | MTR_8g103740 | 51.505 | 299 | 143 | 2 | 113 | 410 | 1 | 298 | 6.16e-112 | 331 |
| MS.gene064960.t1 | MTR_8g103740 | 52.657 | 207 | 98 | 0 | 204 | 410 | 1 | 207 | 8.57e-80 | 246 |
| MS.gene064960.t1 | MTR_2g022060 | 29.843 | 382 | 243 | 5 | 51 | 410 | 28 | 406 | 4.74e-54 | 185 |
| MS.gene064960.t1 | MTR_7g057720 | 28.535 | 389 | 238 | 9 | 51 | 410 | 31 | 408 | 1.73e-45 | 162 |
| MS.gene064960.t1 | MTR_7g057720 | 27.228 | 404 | 241 | 9 | 51 | 410 | 31 | 425 | 3.16e-42 | 154 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064960.t1 | AT2G33205 | 60.859 | 419 | 161 | 3 | 5 | 421 | 2 | 419 | 0.0 | 519 |
| MS.gene064960.t1 | AT2G33205 | 60.570 | 421 | 161 | 4 | 5 | 421 | 2 | 421 | 0.0 | 514 |
| MS.gene064960.t1 | AT2G33205 | 60.570 | 421 | 161 | 4 | 5 | 421 | 2 | 421 | 0.0 | 514 |
| MS.gene064960.t1 | AT2G33205 | 61.713 | 397 | 147 | 4 | 5 | 397 | 2 | 397 | 1.23e-173 | 492 |
| MS.gene064960.t1 | AT2G33205 | 60.322 | 373 | 143 | 4 | 5 | 373 | 2 | 373 | 1.09e-156 | 447 |
| MS.gene064960.t1 | AT2G33205 | 63.467 | 323 | 114 | 3 | 102 | 421 | 5 | 326 | 1.81e-144 | 415 |
| MS.gene064960.t1 | AT2G33205 | 64.103 | 312 | 108 | 3 | 113 | 421 | 1 | 311 | 2.56e-141 | 406 |
| MS.gene064960.t1 | AT2G33205 | 57.784 | 334 | 138 | 3 | 5 | 336 | 2 | 334 | 8.00e-131 | 380 |
| MS.gene064960.t1 | AT2G33205 | 57.784 | 334 | 138 | 3 | 5 | 336 | 2 | 334 | 8.00e-131 | 380 |
| MS.gene064960.t1 | AT3G24460 | 48.901 | 364 | 181 | 2 | 51 | 410 | 40 | 402 | 1.09e-127 | 375 |
| MS.gene064960.t1 | AT3G24460 | 48.901 | 364 | 181 | 2 | 51 | 410 | 40 | 402 | 1.09e-127 | 375 |
| MS.gene064960.t1 | AT4G13345 | 48.889 | 360 | 183 | 1 | 51 | 410 | 33 | 391 | 1.83e-124 | 366 |
| MS.gene064960.t1 | AT4G13345 | 48.333 | 360 | 185 | 1 | 51 | 410 | 33 | 391 | 2.68e-123 | 363 |
| MS.gene064960.t1 | AT4G13345 | 48.333 | 360 | 185 | 1 | 51 | 410 | 33 | 391 | 2.68e-123 | 363 |
| MS.gene064960.t1 | AT4G13345 | 48.991 | 347 | 176 | 1 | 51 | 397 | 33 | 378 | 7.08e-118 | 350 |
| MS.gene064960.t1 | AT4G13345 | 47.368 | 323 | 169 | 1 | 51 | 373 | 33 | 354 | 1.41e-102 | 309 |
| MS.gene064960.t1 | AT4G13345 | 45.669 | 254 | 137 | 1 | 51 | 304 | 33 | 285 | 5.73e-69 | 221 |
| MS.gene064960.t1 | AT4G13345 | 45.669 | 254 | 137 | 1 | 51 | 304 | 33 | 285 | 5.73e-69 | 221 |
| MS.gene064960.t1 | AT3G06170 | 29.659 | 381 | 244 | 5 | 51 | 410 | 29 | 406 | 1.85e-50 | 176 |
| MS.gene064960.t1 | AT1G16180 | 28.571 | 385 | 245 | 8 | 51 | 410 | 31 | 410 | 1.58e-41 | 152 |
| MS.gene064960.t1 | AT1G16180 | 28.571 | 385 | 245 | 8 | 51 | 410 | 31 | 410 | 1.58e-41 | 152 |
Find 72 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCATGCCCGTTATTATTT+TGG | 0.113799 | 1.4:+31074248 | MS.gene064960:CDS |
| CATTGATTCCAAATGCTTTC+AGG | 0.181911 | 1.4:+31076644 | MS.gene064960:CDS |
| AACCACTATTTCCAATTTCT+TGG | 0.209768 | 1.4:-31076471 | None:intergenic |
| GTTATTTGTCTCACATCTTA+TGG | 0.217842 | 1.4:-31076449 | None:intergenic |
| CTCTTCTTCGTTTCTTCGTC+TGG | 0.247468 | 1.4:-31075557 | None:intergenic |
| AGCCAAAACAATTGCAAATA+TGG | 0.258542 | 1.4:-31076607 | None:intergenic |
| TGCCATATTTGCAATTGTTT+TGG | 0.262932 | 1.4:+31076605 | MS.gene064960:CDS |
| TATTCCACCAAATGATAAAA+TGG | 0.276054 | 1.4:-31075523 | None:intergenic |
| GAGACAAATAACCAAGAAAT+TGG | 0.290791 | 1.4:+31076460 | MS.gene064960:CDS |
| TCACAAATTGTACAAATATA+TGG | 0.296408 | 1.4:+31075176 | MS.gene064960:CDS |
| AATTCTTCTTGCTGTAATTC+TGG | 0.335471 | 1.4:+31075839 | MS.gene064960:CDS |
| GTGATTCACCTGAAAGCATT+TGG | 0.339391 | 1.4:-31076652 | None:intergenic |
| AACCAAGAAATTGGAAATAG+TGG | 0.389373 | 1.4:+31076469 | MS.gene064960:CDS |
| GTCTCACATCTTATGGTGGC+AGG | 0.390074 | 1.4:-31076442 | None:intergenic |
| TCATTTGGTGGAATAAGTAT+TGG | 0.392219 | 1.4:+31075531 | MS.gene064960:CDS |
| GGGGTTCTCCGTGTGAGTTT+AGG | 0.395668 | 1.4:+31074719 | MS.gene064960:CDS |
| ACTTTGTTCTGTCTCACAAT+TGG | 0.398300 | 1.4:-31077392 | None:intergenic |
| TGCAATGTTATTCATCAGTT+GGG | 0.405258 | 1.4:+31077016 | MS.gene064960:CDS |
| TTTACAGATATCAAAGTTTG+TGG | 0.407120 | 1.4:+31074665 | MS.gene064960:intron |
| CAATTGCAAATATGGCAATA+AGG | 0.413383 | 1.4:-31076599 | None:intergenic |
| GGAATCAATGCCTGTGGAAA+AGG | 0.414630 | 1.4:-31076631 | None:intergenic |
| GGAAGAAGTAATATCTTCAT+TGG | 0.428110 | 1.4:+31074184 | MS.gene064960:CDS |
| TTGCAATGTTATTCATCAGT+TGG | 0.429589 | 1.4:+31077015 | MS.gene064960:CDS |
| GAAATTCATGGCATTCTAGA+TGG | 0.439114 | 1.4:+31075096 | MS.gene064960:CDS |
| TATAATGCCAAAATAATAAC+GGG | 0.453850 | 1.4:-31074255 | None:intergenic |
| ATAGTATACCTTTGAATGTA+AGG | 0.456135 | 1.4:-31075868 | None:intergenic |
| ATCAAAGTTTGTGGAAATGA+AGG | 0.457821 | 1.4:+31074674 | MS.gene064960:CDS |
| GATGATATTCCTTACAGCTA+TGG | 0.466935 | 1.4:+31076954 | MS.gene064960:CDS |
| GAAATAGCTCGTATTGGTGC+AGG | 0.472544 | 1.4:+31075379 | MS.gene064960:CDS |
| ATATAATGCCAAAATAATAA+CGG | 0.477224 | 1.4:-31074256 | None:intergenic |
| GCAGGTGAAATAGCTCGTAT+TGG | 0.478741 | 1.4:+31075373 | MS.gene064960:intron |
| TGTGAGACAGAACAAAGTTA+TGG | 0.485662 | 1.4:+31077397 | MS.gene064960:CDS |
| TGATAGGCAGAGTGTTCCTC+TGG | 0.490976 | 1.4:+31074163 | MS.gene064960:CDS |
| TATGTGAAGGTAGAAATTCA+TGG | 0.501497 | 1.4:+31075084 | MS.gene064960:CDS |
| GGTCATCTCCTTACATTCAA+AGG | 0.504823 | 1.4:+31075860 | MS.gene064960:CDS |
| AAGAAATTGGAAATAGTGGT+TGG | 0.507471 | 1.4:+31076473 | MS.gene064960:CDS |
| ATGGACAAAGTGTTCTACCT+TGG | 0.514469 | 1.4:+31074318 | MS.gene064960:CDS |
| TATATTTGTACAATTTGTGA+AGG | 0.530511 | 1.4:-31075173 | None:intergenic |
| TTAGGTGGAGCATTGATGTT+GGG | 0.537476 | 1.4:+31077150 | MS.gene064960:intron |
| TATGTTGGTGTGCAATCAGA+AGG | 0.545171 | 1.4:+31076009 | MS.gene064960:CDS |
| GAACACTTTGTCCATAATCT+CGG | 0.548664 | 1.4:-31074310 | None:intergenic |
| ATTTGTGAAGGGATGAAGAA+TGG | 0.557041 | 1.4:-31075161 | None:intergenic |
| TGCAAAGTACATTGCTCCCA+AGG | 0.558340 | 1.4:-31076997 | None:intergenic |
| TTCATGGCATTCTAGATGGT+GGG | 0.561987 | 1.4:+31075100 | MS.gene064960:CDS |
| ATATTTGTACAATTTGTGAA+GGG | 0.572172 | 1.4:-31075172 | None:intergenic |
| ATTCATGGCATTCTAGATGG+TGG | 0.575183 | 1.4:+31075099 | MS.gene064960:CDS |
| ATTTGTCTCACATCTTATGG+TGG | 0.581422 | 1.4:-31076446 | None:intergenic |
| TAATTATTGCAGGTTCATAG+AGG | 0.585126 | 1.4:+31075945 | MS.gene064960:intron |
| ATGTTGGGTGGATAAGTACA+TGG | 0.588146 | 1.4:+31077165 | MS.gene064960:CDS |
| GATACAAATACAACTATGCA+AGG | 0.590595 | 1.4:+31077425 | MS.gene064960:CDS |
| TGATAATGAATCTTGTTGCA+TGG | 0.591995 | 1.4:+31074282 | MS.gene064960:CDS |
| ATTAGGTGGAGCATTGATGT+TGG | 0.592264 | 1.4:+31077149 | MS.gene064960:intron |
| ATAGACTTACAATGAATCCA+AGG | 0.596259 | 1.4:-31074335 | None:intergenic |
| TGCATCTGAGGGATCAGCTG+AGG | 0.596273 | 1.4:+31074109 | MS.gene064960:CDS |
| CAGACGAAGAAACGAAGAAG+AGG | 0.599144 | 1.4:+31075558 | MS.gene064960:CDS |
| GGGTGAAGGTTCTCAATGAG+TGG | 0.600602 | 1.4:+31077186 | MS.gene064960:CDS |
| GGTGGAGCATTGATGTTGGG+TGG | 0.602838 | 1.4:+31077153 | MS.gene064960:intron |
| ATCTTCATTGGAGTTAAACA+AGG | 0.603902 | 1.4:+31074196 | MS.gene064960:CDS |
| TTGAAGAATGAGTGCATCTG+AGG | 0.608542 | 1.4:+31074097 | None:intergenic |
| GCATCTGAGGGATCAGCTGA+GGG | 0.618559 | 1.4:+31074110 | MS.gene064960:CDS |
| GAAGATATTACTTCTTCCAG+AGG | 0.621633 | 1.4:-31074179 | None:intergenic |
| GTGGATAAGTACATGGGTGA+AGG | 0.624583 | 1.4:+31077172 | MS.gene064960:CDS |
| AAAACAAGGAAATTATGTGA+AGG | 0.627242 | 1.4:+31075071 | MS.gene064960:CDS |
| GCATTTGGAATCAATGCCTG+TGG | 0.632063 | 1.4:-31076637 | None:intergenic |
| CAAAGCATCCTAAACTCACA+CGG | 0.641175 | 1.4:-31074727 | None:intergenic |
| AAATAGCTCGTATTGGTGCA+GGG | 0.645847 | 1.4:+31075380 | MS.gene064960:CDS |
| TGAAGAATGAGTGCATCTGA+GGG | 0.655575 | 1.4:+31074098 | None:intergenic |
| CTCCCAAGGAAAACACCATG+TGG | 0.661953 | 1.4:-31076983 | None:intergenic |
| TGTTGACACAAGTAGTCCAA+AGG | 0.670225 | 1.4:-31075715 | None:intergenic |
| GTAAGAAGCCATAATTCCTG+AGG | 0.670534 | 1.4:-31075976 | None:intergenic |
| AATTACAGCAAGAAGAATTG+CGG | 0.675218 | 1.4:-31075835 | None:intergenic |
| TGTTGGGTGGATAAGTACAT+GGG | 0.695839 | 1.4:+31077166 | MS.gene064960:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATTAAGAAAAAAATACA+AGG | - | chr1.4:31075932-31075951 | None:intergenic | 10.0% |
| !! | CAATGAAAAAAATATATTTA+TGG | + | chr1.4:31075261-31075280 | MS.gene064960:intron | 10.0% |
| !! | ATATAATGCCAAAATAATAA+CGG | - | chr1.4:31074259-31074278 | None:intergenic | 15.0% |
| !! | TGTAAATTGTATTAATTAGA+AGG | + | chr1.4:31076195-31076214 | MS.gene064960:intron | 15.0% |
| !! | TTATATTTGATTAAACAGTA+TGG | + | chr1.4:31077357-31077376 | MS.gene064960:intron | 15.0% |
| !!! | ATATTATTCATTTTAGTGAT+AGG | + | chr1.4:31074147-31074166 | MS.gene064960:CDS | 15.0% |
| !!! | ATTTTTTTCTTAATTATTGC+AGG | + | chr1.4:31075935-31075954 | MS.gene064960:intron | 15.0% |
| !!! | CTACAATATAAAAGTTTTAA+AGG | - | chr1.4:31074515-31074534 | None:intergenic | 15.0% |
| !!! | TTCATTTTCAACTTTATTTT+TGG | - | chr1.4:31076934-31076953 | None:intergenic | 15.0% |
| !! | AAAAATCATCACATCTTAAA+AGG | - | chr1.4:31077091-31077110 | None:intergenic | 20.0% |
| !! | AAAACAATGAAAATGAGTTA+GGG | - | chr1.4:31077335-31077354 | None:intergenic | 20.0% |
| !! | AAATTGTACAAATATATGGT+TGG | + | chr1.4:31075180-31075199 | MS.gene064960:intron | 20.0% |
| !! | AACTAATTATTTCAACATGT+AGG | - | chr1.4:31076893-31076912 | None:intergenic | 20.0% |
| !! | ACTAATTATTTCAACATGTA+GGG | - | chr1.4:31076892-31076911 | None:intergenic | 20.0% |
| !! | AGGAATAATCATAAAATCTA+AGG | + | chr1.4:31075601-31075620 | MS.gene064960:intron | 20.0% |
| !! | ATATTTGTACAATTTGTGAA+GGG | - | chr1.4:31075175-31075194 | None:intergenic | 20.0% |
| !! | TACATAATCTCATACTATAA+AGG | + | chr1.4:31076552-31076571 | MS.gene064960:intron | 20.0% |
| !! | TACATATTATTATTGCTTCA+AGG | + | chr1.4:31075581-31075600 | MS.gene064960:intron | 20.0% |
| !! | TATAATGCCAAAATAATAAC+GGG | - | chr1.4:31074258-31074277 | None:intergenic | 20.0% |
| !! | TATATTTGTACAATTTGTGA+AGG | - | chr1.4:31075176-31075195 | None:intergenic | 20.0% |
| !! | TCACAAATTGTACAAATATA+TGG | + | chr1.4:31075176-31075195 | MS.gene064960:CDS | 20.0% |
| !! | TGCATTATTAAGATACTATA+AGG | - | chr1.4:31077118-31077137 | None:intergenic | 20.0% |
| !! | TGTATACATTCTAATTCATA+TGG | - | chr1.4:31076536-31076555 | None:intergenic | 20.0% |
| !! | TTACAAATATTAACATGAGA+AGG | - | chr1.4:31076354-31076373 | None:intergenic | 20.0% |
| !!! | AATTTTGAGCTATTAAATCA+AGG | - | chr1.4:31077276-31077295 | None:intergenic | 20.0% |
| !!! | AGAATCATAGTTCTAAATTT+TGG | - | chr1.4:31074538-31074557 | None:intergenic | 20.0% |
| !!! | ATACTTTACATGCTTTAAAT+GGG | - | chr1.4:31076712-31076731 | None:intergenic | 20.0% |
| !!! | ATTTTGAGCTATTAAATCAA+GGG | - | chr1.4:31077275-31077294 | None:intergenic | 20.0% |
| !!! | TATACTTTACATGCTTTAAA+TGG | - | chr1.4:31076713-31076732 | None:intergenic | 20.0% |
| !!! | TCAAAAGTGACAATATTTTT+AGG | + | chr1.4:31076255-31076274 | MS.gene064960:intron | 20.0% |
| !!! | TCCATTTTTCATAATATTAC+CGG | - | chr1.4:31074858-31074877 | None:intergenic | 20.0% |
| !!! | TGTTTTATTGCTTTTATCAA+TGG | + | chr1.4:31075133-31075152 | MS.gene064960:CDS | 20.0% |
| !!! | TTTTATTAATCTGTGTGAAA+TGG | - | chr1.4:31076117-31076136 | None:intergenic | 20.0% |
| ! | AAAACAAGGAAATTATGTGA+AGG | + | chr1.4:31075071-31075090 | MS.gene064960:CDS | 25.0% |
| ! | AAACAATGAAAATGAGTTAG+GGG | - | chr1.4:31077334-31077353 | None:intergenic | 25.0% |
| ! | AAATGGTTCTTACATAGAAA+TGG | + | chr1.4:31075331-31075350 | MS.gene064960:intron | 25.0% |
| ! | AAGGAATGATGTGATAAATT+AGG | - | chr1.4:31077072-31077091 | None:intergenic | 25.0% |
| ! | AATATCTGACTTCATTGTTA+AGG | - | chr1.4:31075023-31075042 | None:intergenic | 25.0% |
| ! | ACCGGTAATATTATGAAAAA+TGG | + | chr1.4:31074854-31074873 | MS.gene064960:intron | 25.0% |
| ! | ATAGTATACCTTTGAATGTA+AGG | - | chr1.4:31075871-31075890 | None:intergenic | 25.0% |
| ! | CAAAACAATGAAAATGAGTT+AGG | - | chr1.4:31077336-31077355 | None:intergenic | 25.0% |
| ! | CTAATTATTTCAACATGTAG+GGG | - | chr1.4:31076891-31076910 | None:intergenic | 25.0% |
| ! | GATAAGTGAAAGAAAGAAAA+TGG | + | chr1.4:31076141-31076160 | MS.gene064960:intron | 25.0% |
| ! | GATATCTGTAAAAAGAGAAA+AGG | - | chr1.4:31074657-31074676 | None:intergenic | 25.0% |
| ! | GTTGTAGTTAATGTTTACAT+AGG | + | chr1.4:31075468-31075487 | MS.gene064960:intron | 25.0% |
| ! | TAACAATTGCTTTCAATAAC+AGG | - | chr1.4:31074956-31074975 | None:intergenic | 25.0% |
| ! | TACATTGACATGAAAAATTC+TGG | + | chr1.4:31075897-31075916 | MS.gene064960:intron | 25.0% |
| ! | TATTCCACCAAATGATAAAA+TGG | - | chr1.4:31075526-31075545 | None:intergenic | 25.0% |
| ! | TGGAAATTGTAAGAATTAAG+AGG | - | chr1.4:31075221-31075240 | None:intergenic | 25.0% |
| ! | TTTACAGATATCAAAGTTTG+TGG | + | chr1.4:31074665-31074684 | MS.gene064960:intron | 25.0% |
| !! | AATATTTTTCACGAATGTGA+CGG | + | chr1.4:31076281-31076300 | MS.gene064960:intron | 25.0% |
| !! | AGATGATTGTTTTCATTCAT+TGG | + | chr1.4:31074697-31074716 | MS.gene064960:CDS | 25.0% |
| !! | ATGATTGTTTTCATTCATTG+GGG | + | chr1.4:31074699-31074718 | MS.gene064960:CDS | 25.0% |
| !! | CTTACATTGTTTTCTTATGT+TGG | + | chr1.4:31075994-31076013 | MS.gene064960:CDS | 25.0% |
| !! | GATGATTGTTTTCATTCATT+GGG | + | chr1.4:31074698-31074717 | MS.gene064960:CDS | 25.0% |
| !! | TCAATATATTTTTCATCGCA+TGG | + | chr1.4:31075811-31075830 | MS.gene064960:CDS | 25.0% |
| !! | TTTTGAGCTATTAAATCAAG+GGG | - | chr1.4:31077274-31077293 | None:intergenic | 25.0% |
| !!! | GTCAATTTTGTTTTGAGAAA+TGG | + | chr1.4:31075314-31075333 | MS.gene064960:intron | 25.0% |
| !!! | GTGTCAACATTGTTTTTTAT+TGG | + | chr1.4:31075729-31075748 | MS.gene064960:CDS | 25.0% |
| !!! | TTTTTATTGGTGCTATATGT+GGG | + | chr1.4:31075742-31075761 | MS.gene064960:CDS | 25.0% |
| !!! | TTTTTTATTGGTGCTATATG+TGG | + | chr1.4:31075741-31075760 | MS.gene064960:CDS | 25.0% |
| AACCAAGAAATTGGAAATAG+TGG | + | chr1.4:31076469-31076488 | MS.gene064960:CDS | 30.0% | |
| AACCACTATTTCCAATTTCT+TGG | - | chr1.4:31076474-31076493 | None:intergenic | 30.0% | |
| AAGAAATTGGAAATAGTGGT+TGG | + | chr1.4:31076473-31076492 | MS.gene064960:CDS | 30.0% | |
| AATAACTCAGCTAGAAAGTA+AGG | + | chr1.4:31077044-31077063 | MS.gene064960:intron | 30.0% | |
| AATGCACATTTCATACCATT+AGG | + | chr1.4:31077132-31077151 | MS.gene064960:intron | 30.0% | |
| AATTACAGCAAGAAGAATTG+CGG | - | chr1.4:31075838-31075857 | None:intergenic | 30.0% | |
| AGCCAAAACAATTGCAAATA+TGG | - | chr1.4:31076610-31076629 | None:intergenic | 30.0% | |
| ATAGACTTACAATGAATCCA+AGG | - | chr1.4:31074338-31074357 | None:intergenic | 30.0% | |
| ATCAAAGTTTGTGGAAATGA+AGG | + | chr1.4:31074674-31074693 | MS.gene064960:CDS | 30.0% | |
| ATCTTCATTGGAGTTAAACA+AGG | + | chr1.4:31074196-31074215 | MS.gene064960:CDS | 30.0% | |
| ATGTATACCAGTAACATGTT+TGG | - | chr1.4:31074826-31074845 | None:intergenic | 30.0% | |
| CAACTGATTAAAAGGATACA+AGG | - | chr1.4:31076053-31076072 | None:intergenic | 30.0% | |
| CAATTGCAAATATGGCAATA+AGG | - | chr1.4:31076602-31076621 | None:intergenic | 30.0% | |
| CTATTGAAGGGATAACAAAA+TGG | - | chr1.4:31075659-31075678 | None:intergenic | 30.0% | |
| CTTTCATTCACTTGAAGTTA+TGG | + | chr1.4:31075425-31075444 | MS.gene064960:intron | 30.0% | |
| GAGACAAATAACCAAGAAAT+TGG | + | chr1.4:31076460-31076479 | MS.gene064960:CDS | 30.0% | |
| GATACAAATACAACTATGCA+AGG | + | chr1.4:31077425-31077444 | MS.gene064960:CDS | 30.0% | |
| GGAAGAAGTAATATCTTCAT+TGG | + | chr1.4:31074184-31074203 | MS.gene064960:CDS | 30.0% | |
| GTTATTTGTCTCACATCTTA+TGG | - | chr1.4:31076452-31076471 | None:intergenic | 30.0% | |
| GTTGACTACAACTGATTAAA+AGG | - | chr1.4:31076061-31076080 | None:intergenic | 30.0% | |
| TAATTATTGCAGGTTCATAG+AGG | + | chr1.4:31075945-31075964 | MS.gene064960:intron | 30.0% | |
| TATGTGAAGGTAGAAATTCA+TGG | + | chr1.4:31075084-31075103 | MS.gene064960:CDS | 30.0% | |
| TGCAATGTTATTCATCAGTT+GGG | + | chr1.4:31077016-31077035 | MS.gene064960:CDS | 30.0% | |
| TTAAAAGGATACAAGGATGA+AGG | - | chr1.4:31076046-31076065 | None:intergenic | 30.0% | |
| TTGCAATGTTATTCATCAGT+TGG | + | chr1.4:31077015-31077034 | MS.gene064960:CDS | 30.0% | |
| ! | AAAATGCTAGTCTCTCAAAT+TGG | - | chr1.4:31074374-31074393 | None:intergenic | 30.0% |
| ! | AAAGAATAATAACTTGCGAG+TGG | + | chr1.4:31076172-31076191 | MS.gene064960:intron | 30.0% |
| ! | AATTCTTCTTGCTGTAATTC+TGG | + | chr1.4:31075839-31075858 | MS.gene064960:CDS | 30.0% |
| ! | AGAATGCTAAGATTAGTCAT+TGG | + | chr1.4:31074620-31074639 | MS.gene064960:intron | 30.0% |
| ! | GTGTGATCCATTTTATCATT+TGG | + | chr1.4:31075516-31075535 | MS.gene064960:CDS | 30.0% |
| ! | TCATTTGGTGGAATAAGTAT+TGG | + | chr1.4:31075531-31075550 | MS.gene064960:CDS | 30.0% |
| ! | TCTTTTATCCTCAGGAATTA+TGG | + | chr1.4:31075968-31075987 | MS.gene064960:CDS | 30.0% |
| ! | TGATAATGAATCTTGTTGCA+TGG | + | chr1.4:31074282-31074301 | MS.gene064960:CDS | 30.0% |
| ! | TGATCCATTTTATCATTTGG+TGG | + | chr1.4:31075519-31075538 | MS.gene064960:CDS | 30.0% |
| ! | TGATTGTTTTCATTCATTGG+GGG | + | chr1.4:31074700-31074719 | MS.gene064960:CDS | 30.0% |
| ! | TGCCATATTTGCAATTGTTT+TGG | + | chr1.4:31076605-31076624 | MS.gene064960:CDS | 30.0% |
| ! | TTTGAGAGATTAACTTGAGA+TGG | - | chr1.4:31076803-31076822 | None:intergenic | 30.0% |
| !! | ATGAAGTATTGACACAAACA+CGG | + | chr1.4:31074797-31074816 | MS.gene064960:intron | 30.0% |
| !! | TCTAACTTCTATGTTTTTGC+AGG | + | chr1.4:31075355-31075374 | MS.gene064960:intron | 30.0% |
| !!! | AGTTTTAAAGGTCTCTTTGA+AGG | - | chr1.4:31074503-31074522 | None:intergenic | 30.0% |
| AAATGCAGACATTTCTGTGA+AGG | - | chr1.4:31075682-31075701 | None:intergenic | 35.0% | |
| AAGTGATTGAATGCAAGTAC+TGG | + | chr1.4:31074877-31074896 | MS.gene064960:intron | 35.0% | |
| AATAAGGAAGCCCTATTAAG+AGG | - | chr1.4:31076586-31076605 | None:intergenic | 35.0% | |
| AATGAAAATGAGTTAGGGGT+GGG | - | chr1.4:31077330-31077349 | None:intergenic | 35.0% | |
| ACAGTTGTTTAACTGTGGTT+GGG | + | chr1.4:31074404-31074423 | MS.gene064960:intron | 35.0% | |
| ACTTTGTTCTGTCTCACAAT+TGG | - | chr1.4:31077395-31077414 | None:intergenic | 35.0% | |
| AGGTCTCTTATCCTCTTAAT+AGG | + | chr1.4:31076572-31076591 | MS.gene064960:intron | 35.0% | |
| ATAATTTCTCGTGAAGCATG+TGG | - | chr1.4:31074768-31074787 | None:intergenic | 35.0% | |
| ATTAGGATCTTGGTTATAGC+TGG | + | chr1.4:31075292-31075311 | MS.gene064960:intron | 35.0% | |
| ATTTCTGTGAAGGCTATTGA+AGG | - | chr1.4:31075672-31075691 | None:intergenic | 35.0% | |
| ATTTGTCTCACATCTTATGG+TGG | - | chr1.4:31076449-31076468 | None:intergenic | 35.0% | |
| ATTTGTGAAGGGATGAAGAA+TGG | - | chr1.4:31075164-31075183 | None:intergenic | 35.0% | |
| CATTAACTACAACAGTTAGC+TGG | - | chr1.4:31075461-31075480 | None:intergenic | 35.0% | |
| GAAATTCATGGCATTCTAGA+TGG | + | chr1.4:31075096-31075115 | MS.gene064960:CDS | 35.0% | |
| GAACACTTTGTCCATAATCT+CGG | - | chr1.4:31074313-31074332 | None:intergenic | 35.0% | |
| GAAGATATTACTTCTTCCAG+AGG | - | chr1.4:31074182-31074201 | None:intergenic | 35.0% | |
| GATGATATTCCTTACAGCTA+TGG | + | chr1.4:31076954-31076973 | MS.gene064960:CDS | 35.0% | |
| GGTCTCTTATCCTCTTAATA+GGG | + | chr1.4:31076573-31076592 | MS.gene064960:intron | 35.0% | |
| TATTTATGGCACAGTGCATT+AGG | + | chr1.4:31075275-31075294 | MS.gene064960:intron | 35.0% | |
| TGGAAAAATCCATAGCTGTA+AGG | - | chr1.4:31076966-31076985 | None:intergenic | 35.0% | |
| TGGTATACATACATAGACAC+CGG | + | chr1.4:31074836-31074855 | MS.gene064960:intron | 35.0% | |
| TGTGAGACAGAACAAAGTTA+TGG | + | chr1.4:31077397-31077416 | MS.gene064960:CDS | 35.0% | |
| TTCTCAGCACAGTAAAAACA+AGG | + | chr1.4:31075057-31075076 | MS.gene064960:CDS | 35.0% | |
| TTTCTGTGAAGGCTATTGAA+GGG | - | chr1.4:31075671-31075690 | None:intergenic | 35.0% | |
| ! | CTTCATGCCCGTTATTATTT+TGG | + | chr1.4:31074248-31074267 | MS.gene064960:CDS | 35.0% |
| ! | TCACAGAAATGTCTGCATTT+TGG | + | chr1.4:31075682-31075701 | MS.gene064960:intron | 35.0% |
| !! | AAATGTCTGCATTTTGGTAC+AGG | + | chr1.4:31075688-31075707 | MS.gene064960:intron | 35.0% |
| !! | CATTGATTCCAAATGCTTTC+AGG | + | chr1.4:31076644-31076663 | MS.gene064960:CDS | 35.0% |
| AACATCAATGCTCCACCTAA+TGG | - | chr1.4:31077150-31077169 | None:intergenic | 40.0% | |
| AAGGATACAAGGATGAAGGA+AGG | - | chr1.4:31076042-31076061 | None:intergenic | 40.0% | |
| AGCTAGATTAGACGTGTGTT+TGG | - | chr1.4:31074580-31074599 | None:intergenic | 40.0% | |
| ATGTTGGGTGGATAAGTACA+TGG | + | chr1.4:31077165-31077184 | MS.gene064960:CDS | 40.0% | |
| ATTCATGGCATTCTAGATGG+TGG | + | chr1.4:31075099-31075118 | MS.gene064960:CDS | 40.0% | |
| CAATGAAAATGAGTTAGGGG+TGG | - | chr1.4:31077331-31077350 | None:intergenic | 40.0% | |
| CACAGTTGTTTAACTGTGGT+TGG | + | chr1.4:31074403-31074422 | MS.gene064960:intron | 40.0% | |
| CAGCAGAATTCAGACAATTG+TGG | + | chr1.4:31074457-31074476 | MS.gene064960:intron | 40.0% | |
| CCACAGTTAAACAACTGTGA+TGG | - | chr1.4:31074402-31074421 | None:intergenic | 40.0% | |
| CCATCACAGTTGTTTAACTG+TGG | + | chr1.4:31074399-31074418 | MS.gene064960:intron | 40.0% | |
| GAAGCATGTGGCATAATTGA+AGG | - | chr1.4:31074756-31074775 | None:intergenic | 40.0% | |
| GACGGTTATTATGAGACAGA+GGG | + | chr1.4:31076299-31076318 | MS.gene064960:intron | 40.0% | |
| GCACATTTCATACCATTAGG+TGG | + | chr1.4:31077135-31077154 | MS.gene064960:intron | 40.0% | |
| GGTCATCTCCTTACATTCAA+AGG | + | chr1.4:31075860-31075879 | MS.gene064960:CDS | 40.0% | |
| GTAAGAAGCCATAATTCCTG+AGG | - | chr1.4:31075979-31075998 | None:intergenic | 40.0% | |
| TATGTTGGTGTGCAATCAGA+AGG | + | chr1.4:31076009-31076028 | MS.gene064960:CDS | 40.0% | |
| TGAATTCTGCTGCACTATCA+AGG | - | chr1.4:31074449-31074468 | None:intergenic | 40.0% | |
| TGACGGTTATTATGAGACAG+AGG | + | chr1.4:31076298-31076317 | MS.gene064960:intron | 40.0% | |
| TGTTGACACAAGTAGTCCAA+AGG | - | chr1.4:31075718-31075737 | None:intergenic | 40.0% | |
| TGTTGGGTGGATAAGTACAT+GGG | + | chr1.4:31077166-31077185 | MS.gene064960:CDS | 40.0% | |
| TTCATGGCATTCTAGATGGT+GGG | + | chr1.4:31075100-31075119 | MS.gene064960:CDS | 40.0% | |
| TTTAACTGTGGTTGGGATTG+CGG | + | chr1.4:31074411-31074430 | MS.gene064960:intron | 40.0% | |
| ! | AAATAGCTCGTATTGGTGCA+GGG | + | chr1.4:31075380-31075399 | MS.gene064960:CDS | 40.0% |
| ! | ATCTGACTTTTCTCGCTACA+TGG | - | chr1.4:31075241-31075260 | None:intergenic | 40.0% |
| ! | ATGGACAAAGTGTTCTACCT+TGG | + | chr1.4:31074318-31074337 | MS.gene064960:CDS | 40.0% |
| ! | CAAAGCATCCTAAACTCACA+CGG | - | chr1.4:31074730-31074749 | None:intergenic | 40.0% |
| ! | CAGCTATGGATTTTTCCACA+TGG | + | chr1.4:31076968-31076987 | MS.gene064960:CDS | 40.0% |
| ! | CATAGAGGTCTTTTATCCTC+AGG | + | chr1.4:31075960-31075979 | MS.gene064960:CDS | 40.0% |
| ! | GCATGGTTTTTCCGAGATTA+TGG | + | chr1.4:31074299-31074318 | MS.gene064960:CDS | 40.0% |
| ! | TAGACGTGTGTTTGGTTTCA+CGG | - | chr1.4:31074572-31074591 | None:intergenic | 40.0% |
| ! | TTCCACATGGTGTTTTCCTT+GGG | + | chr1.4:31076981-31077000 | MS.gene064960:CDS | 40.0% |
| ! | TTTCCACATGGTGTTTTCCT+TGG | + | chr1.4:31076980-31076999 | MS.gene064960:CDS | 40.0% |
| !! | ATTAGGTGGAGCATTGATGT+TGG | + | chr1.4:31077149-31077168 | MS.gene064960:intron | 40.0% |
| !! | GTGATTCACCTGAAAGCATT+TGG | - | chr1.4:31076655-31076674 | None:intergenic | 40.0% |
| !! | TTAGGTGGAGCATTGATGTT+GGG | + | chr1.4:31077150-31077169 | MS.gene064960:intron | 40.0% |
| ACGGACACCAAACATGTTAC+TGG | + | chr1.4:31074816-31074835 | MS.gene064960:intron | 45.0% | |
| CAGACGAAGAAACGAAGAAG+AGG | + | chr1.4:31075558-31075577 | MS.gene064960:CDS | 45.0% | |
| CTCTTCTTCGTTTCTTCGTC+TGG | - | chr1.4:31075560-31075579 | None:intergenic | 45.0% | |
| GCAGGTGAAATAGCTCGTAT+TGG | + | chr1.4:31075373-31075392 | MS.gene064960:intron | 45.0% | |
| GGAATCAATGCCTGTGGAAA+AGG | - | chr1.4:31076634-31076653 | None:intergenic | 45.0% | |
| GTGGATAAGTACATGGGTGA+AGG | + | chr1.4:31077172-31077191 | MS.gene064960:CDS | 45.0% | |
| TGCAAAGTACATTGCTCCCA+AGG | - | chr1.4:31077000-31077019 | None:intergenic | 45.0% | |
| ! | GAAATAGCTCGTATTGGTGC+AGG | + | chr1.4:31075379-31075398 | MS.gene064960:CDS | 45.0% |
| ! | GCATTTGGAATCAATGCCTG+TGG | - | chr1.4:31076640-31076659 | None:intergenic | 45.0% |
| ! | TTTTGGTACAGGTGCTCCTT+TGG | + | chr1.4:31075699-31075718 | MS.gene064960:intron | 45.0% |
| CTCCCAAGGAAAACACCATG+TGG | - | chr1.4:31076986-31077005 | None:intergenic | 50.0% | |
| GGCACAGTGCATTAGGATCT+TGG | + | chr1.4:31075282-31075301 | MS.gene064960:intron | 50.0% | |
| GGGTGAAGGTTCTCAATGAG+TGG | + | chr1.4:31077186-31077205 | MS.gene064960:CDS | 50.0% | |
| GTCTCACATCTTATGGTGGC+AGG | - | chr1.4:31076445-31076464 | None:intergenic | 50.0% | |
| ! | TGATAGGCAGAGTGTTCCTC+TGG | + | chr1.4:31074163-31074182 | MS.gene064960:CDS | 50.0% |
| !!! | GTTTTGGCTGCCTTTTCCAC+AGG | + | chr1.4:31076621-31076640 | MS.gene064960:CDS | 50.0% |
| GCATCTGAGGGATCAGCTGA+GGG | + | chr1.4:31074110-31074129 | MS.gene064960:CDS | 55.0% | |
| GGGGTTCTCCGTGTGAGTTT+AGG | + | chr1.4:31074719-31074738 | MS.gene064960:CDS | 55.0% | |
| TGCATCTGAGGGATCAGCTG+AGG | + | chr1.4:31074109-31074128 | MS.gene064960:CDS | 55.0% | |
| !! | GGTGGAGCATTGATGTTGGG+TGG | + | chr1.4:31077153-31077172 | MS.gene064960:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 31074104 | 31077472 | 31074104 | ID=MS.gene064960 |
| chr1.4 | mRNA | 31074104 | 31077472 | 31074104 | ID=MS.gene064960.t1;Parent=MS.gene064960 |
| chr1.4 | exon | 31074104 | 31074347 | 31074104 | ID=MS.gene064960.t1.exon1;Parent=MS.gene064960.t1 |
| chr1.4 | CDS | 31074104 | 31074347 | 31074104 | ID=cds.MS.gene064960.t1;Parent=MS.gene064960.t1 |
| chr1.4 | exon | 31074672 | 31074748 | 31074672 | ID=MS.gene064960.t1.exon2;Parent=MS.gene064960.t1 |
| chr1.4 | CDS | 31074672 | 31074748 | 31074672 | ID=cds.MS.gene064960.t1;Parent=MS.gene064960.t1 |
| chr1.4 | exon | 31075038 | 31075197 | 31075038 | ID=MS.gene064960.t1.exon3;Parent=MS.gene064960.t1 |
| chr1.4 | CDS | 31075038 | 31075197 | 31075038 | ID=cds.MS.gene064960.t1;Parent=MS.gene064960.t1 |
| chr1.4 | exon | 31075377 | 31075401 | 31075377 | ID=MS.gene064960.t1.exon4;Parent=MS.gene064960.t1 |
| chr1.4 | CDS | 31075377 | 31075401 | 31075377 | ID=cds.MS.gene064960.t1;Parent=MS.gene064960.t1 |
| chr1.4 | exon | 31075490 | 31075579 | 31075490 | ID=MS.gene064960.t1.exon5;Parent=MS.gene064960.t1 |
| chr1.4 | CDS | 31075490 | 31075579 | 31075490 | ID=cds.MS.gene064960.t1;Parent=MS.gene064960.t1 |
| chr1.4 | exon | 31075710 | 31075881 | 31075710 | ID=MS.gene064960.t1.exon6;Parent=MS.gene064960.t1 |
| chr1.4 | CDS | 31075710 | 31075881 | 31075710 | ID=cds.MS.gene064960.t1;Parent=MS.gene064960.t1 |
| chr1.4 | exon | 31075957 | 31076030 | 31075957 | ID=MS.gene064960.t1.exon7;Parent=MS.gene064960.t1 |
| chr1.4 | CDS | 31075957 | 31076030 | 31075957 | ID=cds.MS.gene064960.t1;Parent=MS.gene064960.t1 |
| chr1.4 | exon | 31076438 | 31076507 | 31076438 | ID=MS.gene064960.t1.exon8;Parent=MS.gene064960.t1 |
| chr1.4 | CDS | 31076438 | 31076507 | 31076438 | ID=cds.MS.gene064960.t1;Parent=MS.gene064960.t1 |
| chr1.4 | exon | 31076594 | 31076665 | 31076594 | ID=MS.gene064960.t1.exon9;Parent=MS.gene064960.t1 |
| chr1.4 | CDS | 31076594 | 31076665 | 31076594 | ID=cds.MS.gene064960.t1;Parent=MS.gene064960.t1 |
| chr1.4 | exon | 31076927 | 31077060 | 31076927 | ID=MS.gene064960.t1.exon10;Parent=MS.gene064960.t1 |
| chr1.4 | CDS | 31076927 | 31077060 | 31076927 | ID=cds.MS.gene064960.t1;Parent=MS.gene064960.t1 |
| chr1.4 | exon | 31077154 | 31077227 | 31077154 | ID=MS.gene064960.t1.exon11;Parent=MS.gene064960.t1 |
| chr1.4 | CDS | 31077154 | 31077227 | 31077154 | ID=cds.MS.gene064960.t1;Parent=MS.gene064960.t1 |
| chr1.4 | exon | 31077375 | 31077472 | 31077375 | ID=MS.gene064960.t1.exon12;Parent=MS.gene064960.t1 |
| chr1.4 | CDS | 31077375 | 31077472 | 31077375 | ID=cds.MS.gene064960.t1;Parent=MS.gene064960.t1 |
| Gene Sequence |
| Protein sequence |
