Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065066.t1 | XP_013470260.1 | 98.5 | 331 | 5 | 0 | 1 | 331 | 1 | 331 | 1.80E-183 | 651.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065066.t1 | A0A072VS93 | 98.5 | 331 | 5 | 0 | 1 | 331 | 1 | 331 | 1.3e-183 | 651.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052239 | MS.gene065066 | -0.817997 | 2.47E-52 | -1.69E-46 |
| MS.gene05985 | MS.gene065066 | -0.804442 | 2.16E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065066.t1 | MTR_1g111960 | 98.489 | 331 | 5 | 0 | 1 | 331 | 1 | 331 | 0.0 | 671 |
| MS.gene065066.t1 | MTR_1g050385 | 59.483 | 348 | 125 | 2 | 1 | 332 | 1 | 348 | 8.45e-151 | 427 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065066.t1 | AT3G54290 | 48.603 | 358 | 139 | 5 | 1 | 327 | 1 | 344 | 2.54e-112 | 330 |
Find 91 sgRNAs with CRISPR-Local
Find 145 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAGGCGCGGTTTCCGAATT+TGG | 0.161837 | 1.2:+82863854 | MS.gene065066:CDS |
| CATCAAATCTGTTGGTGTTT+TGG | 0.169536 | 1.2:+82864874 | MS.gene065066:CDS |
| GGAGAAGGTGTTGCGGTTTA+TGG | 0.195686 | 1.2:+82863833 | MS.gene065066:CDS |
| TATCCAACCGTCCGTTTATA+CGG | 0.262754 | 1.2:+82863645 | MS.gene065066:CDS |
| TACAAGGCCTCTTGAAAATC+AGG | 0.294709 | 1.2:-82864908 | None:intergenic |
| TTGGTGACGGTGGGCGGCGG+TGG | 0.301202 | 1.2:+82863873 | MS.gene065066:CDS |
| CGGCGGTGGTGGTGTGGAGG+AGG | 0.308518 | 1.2:+82863887 | MS.gene065066:CDS |
| TCTTCACAAATCAGTTTCAT+TGG | 0.312944 | 1.2:+82863710 | MS.gene065066:CDS |
| TCTTTCACTTAACTATCATT+TGG | 0.331758 | 1.2:-82865552 | None:intergenic |
| CCGCCCACCGTCACCAAATT+CGG | 0.342200 | 1.2:-82863867 | None:intergenic |
| AGTTGATTTACTTCCACTAA+TGG | 0.356284 | 1.2:+82865348 | MS.gene065066:CDS |
| TGCTCGCCTCAAGTTATTGC+TGG | 0.359822 | 1.2:+82864940 | MS.gene065066:CDS |
| GGTGGGCGGCGGTGGTGGTG+TGG | 0.365661 | 1.2:+82863881 | MS.gene065066:CDS |
| TGTGAAACGTGGAGGGAAAA+AGG | 0.368154 | 1.2:+82864001 | MS.gene065066:CDS |
| GTGACGGTGGGCGGCGGTGG+TGG | 0.381919 | 1.2:+82863876 | MS.gene065066:CDS |
| AACTCCAATGCCTCCATTAG+TGG | 0.389254 | 1.2:-82865361 | None:intergenic |
| GGGCGGCGGTGGTGGTGTGG+AGG | 0.415226 | 1.2:+82863884 | MS.gene065066:CDS |
| GAAATTCGCGAGAAGCTATT+CGG | 0.416829 | 1.2:+82864064 | MS.gene065066:CDS |
| GTTGGATCCGAAAGTGTTAC+GGG | 0.417848 | 1.2:+82863804 | MS.gene065066:CDS |
| CCGCGAACCCGTAACACTTT+CGG | 0.423723 | 1.2:-82863811 | None:intergenic |
| AATTTCCTTATCTCCATCTT+CGG | 0.441143 | 1.2:-82864047 | None:intergenic |
| AGTTGGATCCGAAAGTGTTA+CGG | 0.443569 | 1.2:+82863803 | MS.gene065066:CDS |
| TGAAGAGTGACGTGTCCATC+CGG | 0.447849 | 1.2:-82863780 | None:intergenic |
| CCGAATTTGGTGACGGTGGG+CGG | 0.455678 | 1.2:+82863867 | MS.gene065066:CDS |
| GGAGTTGTTGGAGGTTATGA+TGG | 0.459395 | 1.2:+82864085 | MS.gene065066:CDS |
| TGTGAAGTCGGAGAAATTAA+CGG | 0.460050 | 1.2:+82863590 | MS.gene065066:CDS |
| GAAACTCTACGAGATCATTT+CGG | 0.461175 | 1.2:+82863750 | MS.gene065066:CDS |
| GAAATGATCTCGTAGAGTTT+CGG | 0.461770 | 1.2:-82863748 | None:intergenic |
| ACTTCCACTAATGGAGGCAT+TGG | 0.465464 | 1.2:+82865357 | MS.gene065066:CDS |
| TGTGGAGGAGGGAAAATTGC+CGG | 0.467382 | 1.2:+82863899 | MS.gene065066:CDS |
| TTCTGTGGGGAGTCCGAAGA+TGG | 0.470996 | 1.2:+82864034 | MS.gene065066:CDS |
| CGATCAGCACGATCAAAGAA+AGG | 0.475367 | 1.2:-82864140 | None:intergenic |
| GAGAAGCTATTCGGAGTTGT+TGG | 0.486257 | 1.2:+82864073 | MS.gene065066:CDS |
| CAAACAACATTTCAAGGAAG+AGG | 0.495491 | 1.2:+82865324 | MS.gene065066:CDS |
| AATTTGGTGACGGTGGGCGG+CGG | 0.505401 | 1.2:+82863870 | MS.gene065066:CDS |
| CCGAAAGTGTTACGGGTTCG+CGG | 0.512674 | 1.2:+82863811 | MS.gene065066:CDS |
| TTTCCGAATTTGGTGACGGT+GGG | 0.517929 | 1.2:+82863864 | MS.gene065066:CDS |
| GCTCTCTAAAGCTGCAAAAG+AGG | 0.520877 | 1.2:+82864808 | MS.gene065066:CDS |
| GCAGTGCAAACAACATTTCA+AGG | 0.524181 | 1.2:+82865318 | MS.gene065066:CDS |
| CTCGTCACCGTCACCATCAC+CGG | 0.526092 | 1.2:-82863918 | None:intergenic |
| TCTCGTAGAGTTTCGGATGA+AGG | 0.530435 | 1.2:-82863741 | None:intergenic |
| GGCGGTGGTGGTGTGGAGGA+GGG | 0.536524 | 1.2:+82863888 | MS.gene065066:CDS |
| CGAAAGTGTTACGGGTTCGC+GGG | 0.537233 | 1.2:+82863812 | MS.gene065066:CDS |
| TATGTTGTGGCATGTGGAGA+GGG | 0.538481 | 1.2:+82863956 | MS.gene065066:CDS |
| TGCAAAAGAGGAACATGCTA+GGG | 0.539151 | 1.2:+82864820 | MS.gene065066:CDS |
| AAAGAAATCATCAAATCTGT+TGG | 0.539406 | 1.2:+82864866 | MS.gene065066:CDS |
| TTCTTTGATCGTGCTGATCG+AGG | 0.540804 | 1.2:+82864143 | MS.gene065066:CDS |
| CTGCAAAAGAGGAACATGCT+AGG | 0.545050 | 1.2:+82864819 | MS.gene065066:CDS |
| GGAGGGAAAATTGCCGGTGA+TGG | 0.548850 | 1.2:+82863905 | MS.gene065066:CDS |
| AGGGACTTACCTCTCATGAA+TGG | 0.557672 | 1.2:+82864839 | MS.gene065066:CDS |
| TGTTACGGGTTCGCGGGAGA+AGG | 0.558314 | 1.2:+82863818 | MS.gene065066:CDS |
| AAGCTATTCGGAGTTGTTGG+AGG | 0.559085 | 1.2:+82864076 | MS.gene065066:CDS |
| AAGGCTGTTGATCCTTCTGT+GGG | 0.559583 | 1.2:+82864020 | MS.gene065066:CDS |
| GGAGTCCGAAGATGGAGATA+AGG | 0.561789 | 1.2:+82864042 | MS.gene065066:CDS |
| AAAGGCTGTTGATCCTTCTG+TGG | 0.562005 | 1.2:+82864019 | MS.gene065066:CDS |
| AGATCATTTCGGATCCGACC+CGG | 0.564462 | 1.2:+82863761 | MS.gene065066:CDS |
| ACAAGGCCTCTTGAAAATCA+GGG | 0.569588 | 1.2:-82864907 | None:intergenic |
| TGATTTACTTCCACTAATGG+AGG | 0.571191 | 1.2:+82865351 | MS.gene065066:CDS |
| GCGGTTTCCGAATTTGGTGA+CGG | 0.571307 | 1.2:+82863860 | MS.gene065066:CDS |
| GTTTCCGAATTTGGTGACGG+TGG | 0.573026 | 1.2:+82863863 | MS.gene065066:CDS |
| GAAGAGTGACGTGTCCATCC+GGG | 0.576363 | 1.2:-82863779 | None:intergenic |
| GATCAGCACGATCAAAGAAA+GGG | 0.577300 | 1.2:-82864139 | None:intergenic |
| TCGTGATGCTATGAAGTACC+TGG | 0.580547 | 1.2:+82865483 | MS.gene065066:CDS |
| GAACCGTATAAACGGACGGT+TGG | 0.580668 | 1.2:-82863648 | None:intergenic |
| ATCTTCGGACTCCCCACAGA+AGG | 0.580779 | 1.2:-82864032 | None:intergenic |
| GAAGGTGTTGCGGTTTATGG+AGG | 0.583239 | 1.2:+82863836 | MS.gene065066:CDS |
| GGACACGTCACTCTTCAAGT+TGG | 0.588350 | 1.2:+82863786 | MS.gene065066:CDS |
| TAAGAGTATGTTGTGGCATG+TGG | 0.595830 | 1.2:+82863950 | MS.gene065066:CDS |
| TACACATGCTAATCAAGTCC+AGG | 0.596922 | 1.2:-82865501 | None:intergenic |
| TATGATGGAACATGCTCGGA+TGG | 0.599363 | 1.2:+82864100 | MS.gene065066:CDS |
| GCGAGCAGAAAGATTATACA+AGG | 0.601678 | 1.2:-82864924 | None:intergenic |
| GATCTGATGCATGGAACACA+CGG | 0.611566 | 1.2:+82865424 | MS.gene065066:CDS |
| TCTTTGATGCCATTCATGAG+AGG | 0.624433 | 1.2:-82864848 | None:intergenic |
| CATTTCGGATCCGACCCGGA+TGG | 0.625020 | 1.2:+82863765 | MS.gene065066:CDS |
| AGGATCTTGTGAAACGTGGA+GGG | 0.632842 | 1.2:+82863994 | MS.gene065066:CDS |
| GAGGATCTTGTGAAACGTGG+AGG | 0.639878 | 1.2:+82863993 | MS.gene065066:CDS |
| CGGTGATGGTGACGGTGACG+AGG | 0.640427 | 1.2:+82863919 | MS.gene065066:CDS |
| GTATGTTGTGGCATGTGGAG+AGG | 0.640566 | 1.2:+82863955 | MS.gene065066:CDS |
| TAGACTTTAGCTACGTCGCG+AGG | 0.645767 | 1.2:-82863624 | None:intergenic |
| TGGTGAACCGTATAAACGGA+CGG | 0.648385 | 1.2:-82863652 | None:intergenic |
| AACTTACCAGCAATAACTTG+AGG | 0.649400 | 1.2:-82864946 | None:intergenic |
| AGGTTATGATGGAACATGCT+CGG | 0.651869 | 1.2:+82864096 | MS.gene065066:CDS |
| AAAATTGCCGGTGATGGTGA+CGG | 0.654372 | 1.2:+82863911 | MS.gene065066:CDS |
| GTTCGCGGGAGAAGGTGTTG+CGG | 0.658726 | 1.2:+82863826 | MS.gene065066:CDS |
| GCGGAGGATCTTGTGAAACG+TGG | 0.670820 | 1.2:+82863990 | MS.gene065066:CDS |
| TGCAGCATAAGAGTATGTTG+TGG | 0.678190 | 1.2:+82863943 | MS.gene065066:CDS |
| AGTGACGTGTCCATCCGGGT+CGG | 0.687526 | 1.2:-82863775 | None:intergenic |
| TGTTGCGGTTTATGGAGGCG+CGG | 0.691904 | 1.2:+82863841 | MS.gene065066:CDS |
| AGGTACTTCATAGCATCACG+AGG | 0.741978 | 1.2:-82865481 | None:intergenic |
| AGGCTGTTGATCCTTCTGTG+GGG | 0.744546 | 1.2:+82864021 | MS.gene065066:CDS |
| GAAGTCGGAGAAATTAACGG+CGG | 0.794619 | 1.2:+82863593 | MS.gene065066:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTATGTGTTTTTTAATA+TGG | + | chr1.2:82865263-82865282 | MS.gene065066:intron | 10.0% |
| !!! | TTTTATGTGTTTTTTAATAT+GGG | + | chr1.2:82865264-82865283 | MS.gene065066:intron | 10.0% |
| !!! | CATGTATTTATTTATCTTTT+GGG | + | chr1.2:82864773-82864792 | MS.gene065066:intron | 15.0% |
| !!! | GTAAGTAATTTTTTCATTTT+GGG | + | chr1.2:82864680-82864699 | MS.gene065066:intron | 15.0% |
| !!! | TATTAAAGTTTTTTCTAGAA+GGG | + | chr1.2:82865452-82865471 | MS.gene065066:CDS | 15.0% |
| !!! | TGTAAGTAATTTTTTCATTT+TGG | + | chr1.2:82864679-82864698 | MS.gene065066:intron | 15.0% |
| !!! | TTATTAAAGTTTTTTCTAGA+AGG | + | chr1.2:82865451-82865470 | MS.gene065066:CDS | 15.0% |
| !! | AATGTTCAACAAAATCAATA+TGG | - | chr1.2:82864595-82864614 | None:intergenic | 20.0% |
| !!! | GCATGTATTTATTTATCTTT+TGG | + | chr1.2:82864772-82864791 | MS.gene065066:intron | 20.0% |
| ! | AAAGAAATCATCAAATCTGT+TGG | + | chr1.2:82864866-82864885 | MS.gene065066:CDS | 25.0% |
| ! | ACAGATTAACAAAGAAATCA+AGG | - | chr1.2:82865290-82865309 | None:intergenic | 25.0% |
| ! | TACTAGTTCAACTAAATTGA+TGG | - | chr1.2:82864191-82864210 | None:intergenic | 25.0% |
| !! | GACAGATTTTCATATACTTT+TGG | - | chr1.2:82864252-82864271 | None:intergenic | 25.0% |
| !! | TAAGTAGTGAGAATACTTTT+TGG | - | chr1.2:82863675-82863694 | None:intergenic | 25.0% |
| AAACCAAGAACATGAAGAAA+AGG | - | chr1.2:82864561-82864580 | None:intergenic | 30.0% | |
| AATTTCCTTATCTCCATCTT+CGG | - | chr1.2:82864050-82864069 | None:intergenic | 30.0% | |
| CTCTACTCTACTCAATTTAT+AGG | + | chr1.2:82865120-82865139 | MS.gene065066:intron | 30.0% | |
| TAGTTCTTATCATGACTTAG+AGG | + | chr1.2:82864281-82864300 | MS.gene065066:intron | 30.0% | |
| TCTTCACAAATCAGTTTCAT+TGG | + | chr1.2:82863710-82863729 | MS.gene065066:CDS | 30.0% | |
| TCTTTGTTAATCTGTCATCA+GGG | + | chr1.2:82865295-82865314 | MS.gene065066:intron | 30.0% | |
| TTCTTTGTTAATCTGTCATC+AGG | + | chr1.2:82865294-82865313 | MS.gene065066:intron | 30.0% | |
| TTGTATCTCCTTGATTTCAA+TGG | + | chr1.2:82865186-82865205 | MS.gene065066:intron | 30.0% | |
| ! | AGTTGATTTACTTCCACTAA+TGG | + | chr1.2:82865348-82865367 | MS.gene065066:CDS | 30.0% |
| ! | CTCTTAGGAATAACTCATTT+TGG | + | chr1.2:82864972-82864991 | MS.gene065066:intron | 30.0% |
| ! | TCTATCTGTCAAGTTTTCAT+TGG | + | chr1.2:82864492-82864511 | MS.gene065066:intron | 30.0% |
| ! | TTTCCTTTTCTTCATGTTCT+TGG | + | chr1.2:82864555-82864574 | MS.gene065066:intron | 30.0% |
| ! | TTTCTTCATGTTCTTGGTTT+TGG | + | chr1.2:82864561-82864580 | MS.gene065066:intron | 30.0% |
| !! | ATCTTTTGGGAAAAAATGCA+GGG | + | chr1.2:82864786-82864805 | MS.gene065066:intron | 30.0% |
| !! | GTCGAATTTTCATTTTAGAG+TGG | + | chr1.2:82864994-82865013 | MS.gene065066:intron | 30.0% |
| !! | TATCTTTTGGGAAAAAATGC+AGG | + | chr1.2:82864785-82864804 | MS.gene065066:intron | 30.0% |
| !! | TTCTTCATGTTCTTGGTTTT+GGG | + | chr1.2:82864562-82864581 | MS.gene065066:intron | 30.0% |
| !! | TTTTTGGTGAACCGTATAAA+CGG | - | chr1.2:82863659-82863678 | None:intergenic | 30.0% |
| !!! | GCATCGATTCTATTTTATCT+TGG | - | chr1.2:82865531-82865550 | None:intergenic | 30.0% |
| AACTTACCAGCAATAACTTG+AGG | - | chr1.2:82864949-82864968 | None:intergenic | 35.0% | |
| CAAACAACATTTCAAGGAAG+AGG | + | chr1.2:82865324-82865343 | MS.gene065066:CDS | 35.0% | |
| CATAGCATTACTTCAAAGAC+AGG | - | chr1.2:82864749-82864768 | None:intergenic | 35.0% | |
| CATTGAAAATGTGTGCTAGA+AGG | + | chr1.2:82864611-82864630 | MS.gene065066:intron | 35.0% | |
| CTTTGTTAATCTGTCATCAG+GGG | + | chr1.2:82865296-82865315 | MS.gene065066:intron | 35.0% | |
| GAAACTCTACGAGATCATTT+CGG | + | chr1.2:82863750-82863769 | MS.gene065066:CDS | 35.0% | |
| GAAATGATCTCGTAGAGTTT+CGG | - | chr1.2:82863751-82863770 | None:intergenic | 35.0% | |
| TCTAAGAGCCATTGAAATCA+AGG | - | chr1.2:82865197-82865216 | None:intergenic | 35.0% | |
| TGATTTACTTCCACTAATGG+AGG | + | chr1.2:82865351-82865370 | MS.gene065066:CDS | 35.0% | |
| TGTGAAGTCGGAGAAATTAA+CGG | + | chr1.2:82863590-82863609 | MS.gene065066:CDS | 35.0% | |
| !! | CATCAAATCTGTTGGTGTTT+TGG | + | chr1.2:82864874-82864893 | MS.gene065066:CDS | 35.0% |
| !! | CTGTCTTTGAAGTAATGCTA+TGG | + | chr1.2:82864747-82864766 | MS.gene065066:intron | 35.0% |
| !! | TTCATTTTGGGTACCTTGTT+TGG | + | chr1.2:82864692-82864711 | MS.gene065066:intron | 35.0% |
| !!! | CAATGTTTTGATCTGATGCA+TGG | + | chr1.2:82865415-82865434 | MS.gene065066:CDS | 35.0% |
| AAAATGTGTGCTAGAAGGTC+GGG | + | chr1.2:82864616-82864635 | MS.gene065066:intron | 40.0% | |
| ACAAGGCCTCTTGAAAATCA+GGG | - | chr1.2:82864910-82864929 | None:intergenic | 40.0% | |
| GAAAATGTGTGCTAGAAGGT+CGG | + | chr1.2:82864615-82864634 | MS.gene065066:intron | 40.0% | |
| GAAATTCGCGAGAAGCTATT+CGG | + | chr1.2:82864064-82864083 | MS.gene065066:CDS | 40.0% | |
| GATCAGCACGATCAAAGAAA+GGG | - | chr1.2:82864142-82864161 | None:intergenic | 40.0% | |
| GCAGTGCAAACAACATTTCA+AGG | + | chr1.2:82865318-82865337 | MS.gene065066:CDS | 40.0% | |
| GCGAGCAGAAAGATTATACA+AGG | - | chr1.2:82864927-82864946 | None:intergenic | 40.0% | |
| TACAAGGCCTCTTGAAAATC+AGG | - | chr1.2:82864911-82864930 | None:intergenic | 40.0% | |
| TACACATGCTAATCAAGTCC+AGG | - | chr1.2:82865504-82865523 | None:intergenic | 40.0% | |
| TATCCAACCGTCCGTTTATA+CGG | + | chr1.2:82863645-82863664 | MS.gene065066:CDS | 40.0% | |
| TCTTTGATGCCATTCATGAG+AGG | - | chr1.2:82864851-82864870 | None:intergenic | 40.0% | |
| TGCAAAAGAGGAACATGCTA+GGG | + | chr1.2:82864820-82864839 | MS.gene065066:CDS | 40.0% | |
| ! | AGGTTATGATGGAACATGCT+CGG | + | chr1.2:82864096-82864115 | MS.gene065066:CDS | 40.0% |
| ! | GGAGTTTGATGTCATCGATT+TGG | + | chr1.2:82865141-82865160 | MS.gene065066:intron | 40.0% |
| ! | GGGAAACTGTTTTGTGAAGT+CGG | + | chr1.2:82863578-82863597 | MS.gene065066:CDS | 40.0% |
| ! | TAAGAGTATGTTGTGGCATG+TGG | + | chr1.2:82863950-82863969 | MS.gene065066:CDS | 40.0% |
| ! | TGCAGCATAAGAGTATGTTG+TGG | + | chr1.2:82863943-82863962 | MS.gene065066:CDS | 40.0% |
| !! | AGTTGGATCCGAAAGTGTTA+CGG | + | chr1.2:82863803-82863822 | MS.gene065066:CDS | 40.0% |
| !! | TTTTGGGTACCTTGTTTGGT+AGG | + | chr1.2:82864696-82864715 | MS.gene065066:intron | 40.0% |
| !!! | TTCATGTTCTTGGTTTTGGG+TGG | + | chr1.2:82864565-82864584 | MS.gene065066:intron | 40.0% |
| AAAGGCTGTTGATCCTTCTG+TGG | + | chr1.2:82864019-82864038 | MS.gene065066:CDS | 45.0% | |
| AACTCCAATGCCTCCATTAG+TGG | - | chr1.2:82865364-82865383 | None:intergenic | 45.0% | |
| AAGCTATTCGGAGTTGTTGG+AGG | + | chr1.2:82864076-82864095 | MS.gene065066:CDS | 45.0% | |
| AAGGCTGTTGATCCTTCTGT+GGG | + | chr1.2:82864020-82864039 | MS.gene065066:CDS | 45.0% | |
| AGGATCTTGTGAAACGTGGA+GGG | + | chr1.2:82863994-82864013 | MS.gene065066:CDS | 45.0% | |
| AGGGACTTACCTCTCATGAA+TGG | + | chr1.2:82864839-82864858 | MS.gene065066:CDS | 45.0% | |
| AGGTACTTCATAGCATCACG+AGG | - | chr1.2:82865484-82865503 | None:intergenic | 45.0% | |
| CGATCAGCACGATCAAAGAA+AGG | - | chr1.2:82864143-82864162 | None:intergenic | 45.0% | |
| CTGCAAAAGAGGAACATGCT+AGG | + | chr1.2:82864819-82864838 | MS.gene065066:CDS | 45.0% | |
| GAAGTCGGAGAAATTAACGG+CGG | + | chr1.2:82863593-82863612 | MS.gene065066:CDS | 45.0% | |
| GAGAAGCTATTCGGAGTTGT+TGG | + | chr1.2:82864073-82864092 | MS.gene065066:CDS | 45.0% | |
| GATCTGATGCATGGAACACA+CGG | + | chr1.2:82865424-82865443 | MS.gene065066:CDS | 45.0% | |
| GGAGTTGTTGGAGGTTATGA+TGG | + | chr1.2:82864085-82864104 | MS.gene065066:CDS | 45.0% | |
| TATGTTGTGGCATGTGGAGA+GGG | + | chr1.2:82863956-82863975 | MS.gene065066:CDS | 45.0% | |
| TCTCGTAGAGTTTCGGATGA+AGG | - | chr1.2:82863744-82863763 | None:intergenic | 45.0% | |
| TGCTGGTAAGTTCAGCTCTT+AGG | + | chr1.2:82864957-82864976 | MS.gene065066:intron | 45.0% | |
| TGGTGAACCGTATAAACGGA+CGG | - | chr1.2:82863655-82863674 | None:intergenic | 45.0% | |
| TGTGAAACGTGGAGGGAAAA+AGG | + | chr1.2:82864001-82864020 | MS.gene065066:CDS | 45.0% | |
| TTGGTAGGCTACTAGGCTTT+GGG | + | chr1.2:82864711-82864730 | MS.gene065066:intron | 45.0% | |
| TTTGGTAGGCTACTAGGCTT+TGG | + | chr1.2:82864710-82864729 | MS.gene065066:intron | 45.0% | |
| ! | AAAATTGCCGGTGATGGTGA+CGG | + | chr1.2:82863911-82863930 | MS.gene065066:CDS | 45.0% |
| ! | ACCTTGTTTGGTAGGCTACT+AGG | + | chr1.2:82864704-82864723 | MS.gene065066:intron | 45.0% |
| ! | ACTTCCACTAATGGAGGCAT+TGG | + | chr1.2:82865357-82865376 | MS.gene065066:CDS | 45.0% |
| ! | TATGATGGAACATGCTCGGA+TGG | + | chr1.2:82864100-82864119 | MS.gene065066:CDS | 45.0% |
| ! | TCGTGATGCTATGAAGTACC+TGG | + | chr1.2:82865483-82865502 | MS.gene065066:CDS | 45.0% |
| ! | TTCTTTGATCGTGCTGATCG+AGG | + | chr1.2:82864143-82864162 | MS.gene065066:CDS | 45.0% |
| !! | GCTCTCTAAAGCTGCAAAAG+AGG | + | chr1.2:82864808-82864827 | MS.gene065066:CDS | 45.0% |
| !! | GTTGGATCCGAAAGTGTTAC+GGG | + | chr1.2:82863804-82863823 | MS.gene065066:CDS | 45.0% |
| !! | TCTGTTGGTGTTTTGGACTC+TGG | + | chr1.2:82864881-82864900 | MS.gene065066:CDS | 45.0% |
| !! | TGGAAGCCCTGATTTTCAAG+AGG | + | chr1.2:82864901-82864920 | MS.gene065066:CDS | 45.0% |
| !! | TTTCCGAATTTGGTGACGGT+GGG | + | chr1.2:82863864-82863883 | MS.gene065066:CDS | 45.0% |
| AGATCATTTCGGATCCGACC+CGG | + | chr1.2:82863761-82863780 | MS.gene065066:CDS | 50.0% | |
| AGGCTGTTGATCCTTCTGTG+GGG | + | chr1.2:82864021-82864040 | MS.gene065066:CDS | 50.0% | |
| GAACCGTATAAACGGACGGT+TGG | - | chr1.2:82863651-82863670 | None:intergenic | 50.0% | |
| GAGGATCTTGTGAAACGTGG+AGG | + | chr1.2:82863993-82864012 | MS.gene065066:CDS | 50.0% | |
| GCCTAGTAGCCTACCAAACA+AGG | - | chr1.2:82864708-82864727 | None:intergenic | 50.0% | |
| GGACACGTCACTCTTCAAGT+TGG | + | chr1.2:82863786-82863805 | MS.gene065066:CDS | 50.0% | |
| GGAGTCCGAAGATGGAGATA+AGG | + | chr1.2:82864042-82864061 | MS.gene065066:CDS | 50.0% | |
| GTATGTTGTGGCATGTGGAG+AGG | + | chr1.2:82863955-82863974 | MS.gene065066:CDS | 50.0% | |
| TAGACTTTAGCTACGTCGCG+AGG | - | chr1.2:82863627-82863646 | None:intergenic | 50.0% | |
| TGAAGAGTGACGTGTCCATC+CGG | - | chr1.2:82863783-82863802 | None:intergenic | 50.0% | |
| TGCTCGCCTCAAGTTATTGC+TGG | + | chr1.2:82864940-82864959 | MS.gene065066:CDS | 50.0% | |
| TGTGGAGGAGGGAAAATTGC+CGG | + | chr1.2:82863899-82863918 | MS.gene065066:CDS | 50.0% | |
| ! | GCGGTTTCCGAATTTGGTGA+CGG | + | chr1.2:82863860-82863879 | MS.gene065066:CDS | 50.0% |
| !! | AGGCTACTAGGCTTTGGGAA+AGG | + | chr1.2:82864716-82864735 | MS.gene065066:intron | 50.0% |
| !! | GAAGGTGTTGCGGTTTATGG+AGG | + | chr1.2:82863836-82863855 | MS.gene065066:CDS | 50.0% |
| !! | GGAGAAGGTGTTGCGGTTTA+TGG | + | chr1.2:82863833-82863852 | MS.gene065066:CDS | 50.0% |
| !! | GTTTCCGAATTTGGTGACGG+TGG | + | chr1.2:82863863-82863882 | MS.gene065066:CDS | 50.0% |
| !!! | ATGTGGAGAGGGTTTTGAGG+TGG | + | chr1.2:82863967-82863986 | MS.gene065066:CDS | 50.0% |
| !!! | TGTGGAGAGGGTTTTGAGGT+GGG | + | chr1.2:82863968-82863987 | MS.gene065066:CDS | 50.0% |
| ATCTTCGGACTCCCCACAGA+AGG | - | chr1.2:82864035-82864054 | None:intergenic | 55.0% | |
| CCGCGAACCCGTAACACTTT+CGG | - | chr1.2:82863814-82863833 | None:intergenic | 55.0% | |
| GAAGAGTGACGTGTCCATCC+GGG | - | chr1.2:82863782-82863801 | None:intergenic | 55.0% | |
| GCGGAGGATCTTGTGAAACG+TGG | + | chr1.2:82863990-82864009 | MS.gene065066:CDS | 55.0% | |
| GGAGGGAAAATTGCCGGTGA+TGG | + | chr1.2:82863905-82863924 | MS.gene065066:CDS | 55.0% | |
| TGTTGCGGTTTATGGAGGCG+CGG | + | chr1.2:82863841-82863860 | MS.gene065066:CDS | 55.0% | |
| TTCTGTGGGGAGTCCGAAGA+TGG | + | chr1.2:82864034-82864053 | MS.gene065066:CDS | 55.0% | |
| ! | GGCATGTGGAGAGGGTTTTG+AGG | + | chr1.2:82863964-82863983 | MS.gene065066:CDS | 55.0% |
| !! | CCGAAAGTGTTACGGGTTCG+CGG | + | chr1.2:82863811-82863830 | MS.gene065066:CDS | 55.0% |
| !! | CGAAAGTGTTACGGGTTCGC+GGG | + | chr1.2:82863812-82863831 | MS.gene065066:CDS | 55.0% |
| AGTGACGTGTCCATCCGGGT+CGG | - | chr1.2:82863778-82863797 | None:intergenic | 60.0% | |
| CATTTCGGATCCGACCCGGA+TGG | + | chr1.2:82863765-82863784 | MS.gene065066:CDS | 60.0% | |
| CCGCCCACCGTCACCAAATT+CGG | - | chr1.2:82863870-82863889 | None:intergenic | 60.0% | |
| CTCGTCACCGTCACCATCAC+CGG | - | chr1.2:82863921-82863940 | None:intergenic | 60.0% | |
| TGTTACGGGTTCGCGGGAGA+AGG | + | chr1.2:82863818-82863837 | MS.gene065066:CDS | 60.0% | |
| ! | GGAGGCGCGGTTTCCGAATT+TGG | + | chr1.2:82863854-82863873 | MS.gene065066:CDS | 60.0% |
| !! | AATTTGGTGACGGTGGGCGG+CGG | + | chr1.2:82863870-82863889 | MS.gene065066:CDS | 60.0% |
| !! | CCGAATTTGGTGACGGTGGG+CGG | + | chr1.2:82863867-82863886 | MS.gene065066:CDS | 60.0% |
| !! | GTTCGCGGGAGAAGGTGTTG+CGG | + | chr1.2:82863826-82863845 | MS.gene065066:CDS | 60.0% |
| !!! | GGAGAGGGTTTTGAGGTGGG+CGG | + | chr1.2:82863971-82863990 | MS.gene065066:CDS | 60.0% |
| !! | CGGTGATGGTGACGGTGACG+AGG | + | chr1.2:82863919-82863938 | MS.gene065066:CDS | 65.0% |
| !!! | GAGGGTTTTGAGGTGGGCGG+AGG | + | chr1.2:82863974-82863993 | MS.gene065066:CDS | 65.0% |
| ! | GGCGGTGGTGGTGTGGAGGA+GGG | + | chr1.2:82863888-82863907 | MS.gene065066:CDS | 70.0% |
| ! | CGGCGGTGGTGGTGTGGAGG+AGG | + | chr1.2:82863887-82863906 | MS.gene065066:CDS | 75.0% |
| !! | TTGGTGACGGTGGGCGGCGG+TGG | + | chr1.2:82863873-82863892 | MS.gene065066:CDS | 75.0% |
| ! | GTGACGGTGGGCGGCGGTGG+TGG | + | chr1.2:82863876-82863895 | MS.gene065066:CDS | 80.0% |
| !! | GGGCGGCGGTGGTGGTGTGG+AGG | + | chr1.2:82863884-82863903 | MS.gene065066:CDS | 80.0% |
| !! | GGTGGGCGGCGGTGGTGGTG+TGG | + | chr1.2:82863881-82863900 | MS.gene065066:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 82863576 | 82865570 | 82863576 | ID=MS.gene065066 |
| chr1.2 | mRNA | 82863576 | 82865570 | 82863576 | ID=MS.gene065066.t1;Parent=MS.gene065066 |
| chr1.2 | exon | 82863576 | 82864164 | 82863576 | ID=MS.gene065066.t1.exon1;Parent=MS.gene065066.t1 |
| chr1.2 | CDS | 82863576 | 82864164 | 82863576 | ID=cds.MS.gene065066.t1;Parent=MS.gene065066.t1 |
| chr1.2 | exon | 82864807 | 82864961 | 82864807 | ID=MS.gene065066.t1.exon2;Parent=MS.gene065066.t1 |
| chr1.2 | CDS | 82864807 | 82864961 | 82864807 | ID=cds.MS.gene065066.t1;Parent=MS.gene065066.t1 |
| chr1.2 | exon | 82865316 | 82865570 | 82865316 | ID=MS.gene065066.t1.exon3;Parent=MS.gene065066.t1 |
| chr1.2 | CDS | 82865316 | 82865570 | 82865316 | ID=cds.MS.gene065066.t1;Parent=MS.gene065066.t1 |
| Gene Sequence |
| Protein sequence |
