Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene065080.t1 | KEH44277.1 | 75.4 | 463 | 25 | 1 | 1 | 463 | 64 | 437 | 7.40E-188 | 666.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene065080.t1 | A0A072VR65 | 75.4 | 463 | 25 | 1 | 1 | 463 | 64 | 437 | 5.4e-188 | 666.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050156 | MS.gene065080 | 0.805998 | 1.02E-49 | -1.69E-46 |
MS.gene061091 | MS.gene065080 | 0.806787 | 6.94E-50 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene065080.t1 | MTR_1g111630 | 93.354 | 316 | 21 | 0 | 148 | 463 | 122 | 437 | 0.0 | 577 |
MS.gene065080.t1 | MTR_1g111630 | 94.737 | 57 | 3 | 0 | 1 | 57 | 64 | 120 | 1.15e-27 | 115 |
MS.gene065080.t1 | MTR_7g116580 | 56.568 | 472 | 191 | 7 | 1 | 461 | 19 | 487 | 1.28e-169 | 486 |
MS.gene065080.t1 | MTR_7g114090 | 55.365 | 466 | 194 | 7 | 1 | 463 | 19 | 473 | 9.65e-159 | 458 |
MS.gene065080.t1 | MTR_7g116250 | 63.717 | 226 | 77 | 3 | 2 | 222 | 20 | 245 | 4.23e-87 | 267 |
MS.gene065080.t1 | MTR_5g090500 | 47.899 | 238 | 100 | 4 | 71 | 307 | 5 | 219 | 6.34e-55 | 183 |
MS.gene065080.t1 | MTR_7g116260 | 54.783 | 115 | 50 | 1 | 307 | 419 | 3 | 117 | 4.59e-35 | 127 |
MS.gene065080.t1 | MTR_2g064400 | 29.952 | 414 | 247 | 13 | 2 | 393 | 31 | 423 | 1.32e-34 | 135 |
MS.gene065080.t1 | MTR_7g105510 | 36.402 | 239 | 131 | 8 | 4 | 242 | 51 | 268 | 2.26e-30 | 120 |
MS.gene065080.t1 | MTR_6g471290 | 29.224 | 438 | 257 | 14 | 2 | 417 | 510 | 916 | 4.70e-30 | 124 |
MS.gene065080.t1 | MTR_6g471290 | 27.548 | 363 | 204 | 12 | 2 | 343 | 42 | 366 | 5.78e-16 | 81.3 |
MS.gene065080.t1 | MTR_7g117735 | 55.556 | 90 | 39 | 1 | 374 | 463 | 1 | 89 | 2.12e-29 | 110 |
MS.gene065080.t1 | MTR_6g013380 | 36.667 | 240 | 130 | 6 | 2 | 239 | 84 | 303 | 6.83e-29 | 120 |
MS.gene065080.t1 | MTR_6g013240 | 36.667 | 240 | 130 | 6 | 2 | 239 | 89 | 308 | 7.84e-29 | 120 |
MS.gene065080.t1 | MTR_7g095350 | 35.338 | 266 | 151 | 8 | 2 | 267 | 33 | 277 | 1.85e-28 | 117 |
MS.gene065080.t1 | MTR_7g095350 | 35.338 | 266 | 151 | 8 | 2 | 267 | 25 | 269 | 1.88e-28 | 117 |
MS.gene065080.t1 | MTR_7g095350 | 35.338 | 266 | 151 | 8 | 2 | 267 | 25 | 269 | 1.90e-28 | 117 |
MS.gene065080.t1 | MTR_7g095350 | 35.338 | 266 | 151 | 8 | 2 | 267 | 33 | 277 | 9.09e-28 | 116 |
MS.gene065080.t1 | MTR_7g095350 | 35.714 | 266 | 150 | 8 | 2 | 267 | 25 | 269 | 1.06e-27 | 116 |
MS.gene065080.t1 | MTR_7g092650 | 35.938 | 256 | 141 | 10 | 2 | 256 | 51 | 284 | 7.10e-27 | 112 |
MS.gene065080.t1 | MTR_7g095560 | 32.472 | 271 | 154 | 8 | 2 | 267 | 28 | 274 | 1.82e-26 | 112 |
MS.gene065080.t1 | MTR_3g009910 | 32.852 | 277 | 143 | 9 | 2 | 267 | 28 | 272 | 8.74e-24 | 103 |
MS.gene065080.t1 | MTR_3g009910 | 32.852 | 277 | 143 | 9 | 2 | 267 | 28 | 272 | 1.06e-23 | 104 |
MS.gene065080.t1 | MTR_7g087040 | 34.050 | 279 | 157 | 10 | 2 | 280 | 23 | 274 | 2.63e-23 | 103 |
MS.gene065080.t1 | MTR_7g089620 | 36.820 | 239 | 123 | 10 | 2 | 232 | 36 | 254 | 2.23e-22 | 99.8 |
MS.gene065080.t1 | MTR_7g095390 | 38.650 | 163 | 84 | 5 | 2 | 161 | 24 | 173 | 3.96e-22 | 93.6 |
MS.gene065080.t1 | MTR_7g087840 | 35.526 | 228 | 131 | 6 | 2 | 229 | 23 | 234 | 2.44e-21 | 97.4 |
MS.gene065080.t1 | MTR_7g089570 | 36.441 | 236 | 123 | 10 | 2 | 232 | 61 | 274 | 5.40e-21 | 95.9 |
MS.gene065080.t1 | MTR_7g089610 | 34.599 | 237 | 126 | 9 | 2 | 232 | 59 | 272 | 3.65e-20 | 93.6 |
MS.gene065080.t1 | MTR_7g095340 | 36.416 | 173 | 87 | 6 | 2 | 169 | 24 | 178 | 6.94e-17 | 82.0 |
MS.gene065080.t1 | MTR_6g071510 | 27.778 | 360 | 207 | 11 | 2 | 343 | 23 | 347 | 8.97e-16 | 80.5 |
MS.gene065080.t1 | MTR_8g468470 | 24.790 | 476 | 298 | 16 | 4 | 463 | 33 | 464 | 1.51e-14 | 75.9 |
MS.gene065080.t1 | MTR_2g032920 | 30.568 | 229 | 104 | 8 | 47 | 267 | 8 | 189 | 1.20e-13 | 72.4 |
MS.gene065080.t1 | MTR_7g105980 | 24.033 | 362 | 208 | 12 | 66 | 419 | 36 | 338 | 9.04e-11 | 63.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 76 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAACTATTCGCTCAAGTTTC+TGG | 0.108556 | 1.2:-82644008 | None:intergenic |
GGTGCAGGCTATGGGCTTTA+AGG | 0.216097 | 1.2:+82636190 | MS.gene065080:CDS |
ACTCCAATGAAGTGAGTTTA+AGG | 0.216391 | 1.2:-82636884 | None:intergenic |
TTTGATATCCACAATGTTCT+TGG | 0.239020 | 1.2:+82636225 | MS.gene065080:CDS |
CGTATCCAACAACATCAAAA+AGG | 0.242880 | 1.2:+82636836 | MS.gene065080:CDS |
GAGATCAGAGTTATTGAATT+AGG | 0.290784 | 1.2:+82643928 | MS.gene065080:CDS |
CTGGGACATCTTAAGTGATT+TGG | 0.307332 | 1.2:+82637229 | MS.gene065080:CDS |
AAAGGAAAACTTGTAACGTT+TGG | 0.330760 | 1.2:-82636538 | None:intergenic |
TGAACTTGATATTCTGCAAT+TGG | 0.342964 | 1.2:+82637022 | MS.gene065080:CDS |
GAGATGGAACTACTAGAAAC+TGG | 0.344032 | 1.2:+82636252 | MS.gene065080:CDS |
TTGCCTTAAACTCACTTCAT+TGG | 0.356028 | 1.2:+82636881 | MS.gene065080:CDS |
CTAGAAGGTGGTGCAGGCTA+TGG | 0.362796 | 1.2:+82636181 | MS.gene065080:CDS |
GGAGTACTTTGGTCCTGGTT+TGG | 0.368315 | 1.2:+82636902 | MS.gene065080:CDS |
CCTCCTGTGTGGTCTCAAAA+TGG | 0.369197 | 1.2:+82644078 | MS.gene065080:CDS |
AAGGATGAACTCACTATCTT+TGG | 0.371593 | 1.2:-82636783 | None:intergenic |
AACTATTCGCTCAAGTTTCT+GGG | 0.377227 | 1.2:-82644007 | None:intergenic |
ATACGAATTCTCTTTAACAT+AGG | 0.389409 | 1.2:-82636945 | None:intergenic |
CTTCAAAATTCATAACAAAC+TGG | 0.391209 | 1.2:-82636362 | None:intergenic |
CATAGGGGTATTGATGTAAA+AGG | 0.391592 | 1.2:-82636928 | None:intergenic |
AAGGAAAACTTGTAACGTTT+GGG | 0.394349 | 1.2:-82636537 | None:intergenic |
TTTAACCTCAAGATGACATA+AGG | 0.405654 | 1.2:-82636802 | None:intergenic |
TAAAGTCACAGTTGGTGAAA+TGG | 0.406619 | 1.2:-82636626 | None:intergenic |
TTTGCAGAAACTTTCAATCA+TGG | 0.409293 | 1.2:+82637298 | MS.gene065080:CDS |
TGTGAACATAGTAACAATAT+TGG | 0.414415 | 1.2:+82636426 | MS.gene065080:CDS |
GCAATTGGACATCTATTCAA+TGG | 0.420756 | 1.2:+82637037 | MS.gene065080:CDS |
CTCACTTCATTGGAGTACTT+TGG | 0.422195 | 1.2:+82636891 | MS.gene065080:CDS |
ACATATTCGTCGGATATAAC+TGG | 0.425159 | 1.2:-82636969 | None:intergenic |
ATCCCTACTCAGATCAAAAT+CGG | 0.428670 | 1.2:-82636319 | None:intergenic |
TAGGAGGCTGTGTTGGCAAT+TGG | 0.435357 | 1.2:+82643947 | MS.gene065080:CDS |
TCATTGGAGTACTTTGGTCC+TGG | 0.441126 | 1.2:+82636897 | MS.gene065080:CDS |
ATTGAAAGTTTCTGCAAATG+AGG | 0.441234 | 1.2:-82637293 | None:intergenic |
TACGAATTCTCTTTAACATA+GGG | 0.446550 | 1.2:-82636944 | None:intergenic |
TAGAAGGTGGTGCAGGCTAT+GGG | 0.447712 | 1.2:+82636182 | MS.gene065080:CDS |
GAGAACACGACTCGGTGGAT+TGG | 0.450224 | 1.2:+82644046 | MS.gene065080:CDS |
AAACCAGCATACTGTCTAGA+AGG | 0.465967 | 1.2:+82636166 | MS.gene065080:CDS |
TGAACTGTTTATTACAAGTC+TGG | 0.472241 | 1.2:+82636698 | MS.gene065080:CDS |
GCAAATGAGGAAAAGTTTGA+AGG | 0.479088 | 1.2:-82637280 | None:intergenic |
TACTGTCTAGAAGGTGGTGC+AGG | 0.496881 | 1.2:+82636175 | MS.gene065080:CDS |
CAAACCACAGTAGAATCTCT+AGG | 0.508160 | 1.2:-82636291 | None:intergenic |
AACTTGTAACGTTTGGGTGA+AGG | 0.525690 | 1.2:-82636531 | None:intergenic |
ATAGTAACAATATTGGTCAA+TGG | 0.525820 | 1.2:+82636433 | MS.gene065080:CDS |
GAACAGAATAAAGTCACAGT+TGG | 0.528023 | 1.2:-82636634 | None:intergenic |
CTTCGAGGTGAAGATGTAGT+TGG | 0.535087 | 1.2:+82644123 | MS.gene065080:CDS |
TCATCATACAGTGGTCGCCC+TGG | 0.536037 | 1.2:+82637210 | MS.gene065080:CDS |
GAGTCGTGTTCTCCACGATA+AGG | 0.541060 | 1.2:-82644036 | None:intergenic |
TTCATCCTTATGTCATCTTG+AGG | 0.541581 | 1.2:+82636797 | MS.gene065080:CDS |
TACACTTGGAAGTACAAAAG+TGG | 0.541689 | 1.2:+82636674 | MS.gene065080:CDS |
ATGTAAAAGGTCTCCAAACC+AGG | 0.542950 | 1.2:-82636915 | None:intergenic |
GATCTTCGAAAATAAGTCAA+AGG | 0.545510 | 1.2:-82636556 | None:intergenic |
GAAGGACCGAGATGTGCATA+AGG | 0.550308 | 1.2:-82636513 | None:intergenic |
CAAATCACTTAAGATGTCCC+AGG | 0.551190 | 1.2:-82637228 | None:intergenic |
ATTGAATTAGGAGGCTGTGT+TGG | 0.553961 | 1.2:+82643940 | MS.gene065080:CDS |
CATCATACAGTGGTCGCCCT+GGG | 0.556158 | 1.2:+82637211 | MS.gene065080:CDS |
ATCAGAGTTATTGAATTAGG+AGG | 0.556473 | 1.2:+82643931 | MS.gene065080:CDS |
CAATGTTCTTGGAAGCGAGA+TGG | 0.556919 | 1.2:+82636236 | MS.gene065080:CDS |
AAACCACAGTAGAATCTCTA+GGG | 0.580622 | 1.2:-82636290 | None:intergenic |
AATTTGAGATCACTTACACT+TGG | 0.596020 | 1.2:+82636660 | MS.gene065080:CDS |
TAAGGCAATCTAGTGAACAA+AGG | 0.596682 | 1.2:-82636866 | None:intergenic |
GGAAGGCCTTATGCACATCT+CGG | 0.597195 | 1.2:+82636507 | MS.gene065080:CDS |
AGATGGAACTACTAGAAACT+GGG | 0.602469 | 1.2:+82636253 | MS.gene065080:CDS |
CCACCTTCTAGACAGTATGC+TGG | 0.603431 | 1.2:-82636169 | None:intergenic |
AAATGCATTAACATATTCGT+CGG | 0.604532 | 1.2:-82636979 | None:intergenic |
AATCTAAATAGAAGTTCACT+AGG | 0.611146 | 1.2:-82636404 | None:intergenic |
AATTGTTTAAGATGTTTGAG+TGG | 0.613055 | 1.2:-82637182 | None:intergenic |
GGTCTCAAAATGGCTGTCGA+AGG | 0.615882 | 1.2:+82644088 | MS.gene065080:CDS |
ACGAATTCTCTTTAACATAG+GGG | 0.639568 | 1.2:-82636943 | None:intergenic |
AGGATTAGTGAAAAGCTTCG+AGG | 0.642393 | 1.2:+82644108 | MS.gene065080:CDS |
GGAAATCTGATCCTCCTGTG+TGG | 0.644829 | 1.2:+82644067 | MS.gene065080:CDS |
TCGTGGAGAACACGACTCGG+TGG | 0.646236 | 1.2:+82644041 | MS.gene065080:CDS |
AAATCACTTAAGATGTCCCA+GGG | 0.649212 | 1.2:-82637227 | None:intergenic |
TCTCGCTTCCAAGAACATTG+TGG | 0.657652 | 1.2:-82636233 | None:intergenic |
CCAGCATACTGTCTAGAAGG+TGG | 0.674295 | 1.2:+82636169 | MS.gene065080:CDS |
TTATCGTGGAGAACACGACT+CGG | 0.684209 | 1.2:+82644038 | MS.gene065080:CDS |
AATTGAACTTCATCATACAG+TGG | 0.702341 | 1.2:+82637201 | MS.gene065080:CDS |
ACTCCCTAGAGATTCTACTG+TGG | 0.716403 | 1.2:+82636287 | MS.gene065080:CDS |
GATGGAACTACTAGAAACTG+GGG | 0.740906 | 1.2:+82636254 | MS.gene065080:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.2 | gene | 82636141 | 82644170 | 82636141 | ID=MS.gene065080 |
chr1.2 | mRNA | 82636141 | 82644170 | 82636141 | ID=MS.gene065080.t1;Parent=MS.gene065080 |
chr1.2 | exon | 82636141 | 82637058 | 82636141 | ID=MS.gene065080.t1.exon1;Parent=MS.gene065080.t1 |
chr1.2 | CDS | 82636141 | 82637058 | 82636141 | ID=cds.MS.gene065080.t1;Parent=MS.gene065080.t1 |
chr1.2 | exon | 82637155 | 82637319 | 82637155 | ID=MS.gene065080.t1.exon2;Parent=MS.gene065080.t1 |
chr1.2 | CDS | 82637155 | 82637319 | 82637155 | ID=cds.MS.gene065080.t1;Parent=MS.gene065080.t1 |
chr1.2 | exon | 82643862 | 82644170 | 82643862 | ID=MS.gene065080.t1.exon3;Parent=MS.gene065080.t1 |
chr1.2 | CDS | 82643862 | 82644170 | 82643862 | ID=cds.MS.gene065080.t1;Parent=MS.gene065080.t1 |
Gene Sequence |
Protein sequence |