Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061091.t1 | XP_024628382.1 | 75.3 | 231 | 4 | 1 | 3 | 180 | 269 | 499 | 4.40E-83 | 317.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061091.t1 | F4I507 | 62.3 | 231 | 34 | 1 | 3 | 180 | 247 | 477 | 2.3e-69 | 263.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061091.t1 | A0A396JZN0 | 75.3 | 231 | 4 | 1 | 3 | 180 | 269 | 499 | 3.1e-83 | 317.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050026 | MS.gene061091 | 0.803355 | 3.63E-49 | -1.69E-46 |
| MS.gene052208 | MS.gene061091 | 0.800382 | 1.48E-48 | -1.69E-46 |
| MS.gene055818 | MS.gene061091 | 0.807848 | 4.14E-50 | -1.69E-46 |
| MS.gene057026 | MS.gene061091 | 0.801359 | 9.35E-49 | -1.69E-46 |
| MS.gene061091 | MS.gene06269 | 0.807722 | 4.40E-50 | -1.69E-46 |
| MS.gene061091 | MS.gene065039 | 0.804873 | 1.75E-49 | -1.69E-46 |
| MS.gene061091 | MS.gene065080 | 0.806787 | 6.94E-50 | -1.69E-46 |
| MS.gene061091 | MS.gene070818 | 0.802655 | 5.06E-49 | -1.69E-46 |
| MS.gene061091 | MS.gene072397 | -0.809377 | 1.95E-50 | -1.69E-46 |
| MS.gene061091 | MS.gene073008 | 0.803373 | 3.60E-49 | -1.69E-46 |
| MS.gene061091 | MS.gene23190 | 0.804631 | 1.97E-49 | -1.69E-46 |
| MS.gene061091 | MS.gene25151 | 0.821381 | 4.16E-53 | -1.69E-46 |
| MS.gene061091 | MS.gene25778 | 0.805008 | 1.64E-49 | -1.69E-46 |
| MS.gene061091 | MS.gene26647 | 0.815373 | 9.56E-52 | -1.69E-46 |
| MS.gene061091 | MS.gene31142 | 0.812402 | 4.32E-51 | -1.69E-46 |
| MS.gene061091 | MS.gene31283 | 0.800635 | 1.31E-48 | -1.69E-46 |
| MS.gene061091 | MS.gene37053 | 0.805685 | 1.18E-49 | -1.69E-46 |
| MS.gene061091 | MS.gene37612 | 0.800133 | 1.66E-48 | -1.69E-46 |
| MS.gene061091 | MS.gene41347 | 0.804912 | 1.72E-49 | -1.69E-46 |
| MS.gene061091 | MS.gene41424 | 0.803076 | 4.14E-49 | -1.69E-46 |
| MS.gene061091 | MS.gene43372 | 0.812944 | 3.29E-51 | -1.69E-46 |
| MS.gene061091 | MS.gene44510 | 0.805613 | 1.23E-49 | -1.69E-46 |
| MS.gene061091 | MS.gene45507 | 0.803749 | 3.00E-49 | -1.69E-46 |
| MS.gene061091 | MS.gene53704 | 0.800039 | 1.74E-48 | -1.69E-46 |
| MS.gene061091 | MS.gene54195 | 0.805882 | 1.08E-49 | -1.69E-46 |
| MS.gene061091 | MS.gene54858 | 0.823342 | 1.46E-53 | -1.69E-46 |
| MS.gene061091 | MS.gene58638 | 0.817032 | 4.07E-52 | -1.69E-46 |
| MS.gene061091 | MS.gene70231 | 0.814732 | 1.33E-51 | -1.69E-46 |
| MS.gene061091 | MS.gene75184 | 0.800257 | 1.57E-48 | -1.69E-46 |
| MS.gene061091 | MS.gene76153 | 0.804935 | 1.70E-49 | -1.69E-46 |
| MS.gene061091 | MS.gene76750 | 0.803737 | 3.02E-49 | -1.69E-46 |
| MS.gene061091 | MS.gene77015 | 0.815607 | 8.48E-52 | -1.69E-46 |
| MS.gene061091 | MS.gene77715 | 0.821973 | 3.04E-53 | -1.69E-46 |
| MS.gene061091 | MS.gene82750 | 0.801438 | 9.00E-49 | -1.69E-46 |
| MS.gene061091 | MS.gene85071 | 0.802501 | 5.44E-49 | -1.69E-46 |
| MS.gene061091 | MS.gene86806 | 0.803086 | 4.12E-49 | -1.69E-46 |
| MS.gene061091 | MS.gene88832 | 0.803361 | 3.62E-49 | -1.69E-46 |
| MS.gene061091 | MS.gene98087 | 0.807405 | 5.14E-50 | -1.69E-46 |
| MS.gene061091 | MS.gene98088 | 0.81041 | 1.17E-50 | -1.69E-46 |
| MS.gene061091 | MS.gene98611 | 0.801087 | 1.06E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061091.t1 | MTR_1g114540 | 67.672 | 232 | 5 | 2 | 3 | 181 | 269 | 483 | 3.62e-91 | 288 |
| MS.gene061091.t1 | MTR_1g038793 | 64.224 | 232 | 30 | 2 | 3 | 181 | 263 | 494 | 1.63e-87 | 278 |
| MS.gene061091.t1 | MTR_2g081070 | 51.073 | 233 | 60 | 3 | 3 | 181 | 283 | 515 | 1.05e-62 | 209 |
| MS.gene061091.t1 | MTR_8g464480 | 43.348 | 233 | 78 | 3 | 3 | 181 | 264 | 496 | 2.81e-50 | 174 |
| MS.gene061091.t1 | MTR_7g115430 | 36.864 | 236 | 89 | 4 | 1 | 176 | 153 | 388 | 1.30e-39 | 143 |
| MS.gene061091.t1 | MTR_4g125690 | 38.397 | 237 | 84 | 5 | 1 | 176 | 153 | 388 | 7.71e-39 | 141 |
| MS.gene061091.t1 | MTR_1g015620 | 35.745 | 235 | 92 | 4 | 1 | 176 | 150 | 384 | 7.03e-37 | 135 |
| MS.gene061091.t1 | MTR_1g070280 | 35.865 | 237 | 91 | 4 | 1 | 176 | 153 | 389 | 1.31e-36 | 134 |
| MS.gene061091.t1 | MTR_1g070280 | 35.865 | 237 | 91 | 4 | 1 | 176 | 153 | 389 | 1.69e-36 | 134 |
| MS.gene061091.t1 | MTR_1g070280 | 35.865 | 237 | 91 | 4 | 1 | 176 | 153 | 389 | 2.31e-36 | 134 |
| MS.gene061091.t1 | MTR_1g080600 | 36.017 | 236 | 91 | 4 | 1 | 176 | 152 | 387 | 4.13e-36 | 133 |
| MS.gene061091.t1 | MTR_2g062660 | 33.475 | 236 | 97 | 4 | 1 | 176 | 153 | 388 | 1.00e-35 | 132 |
| MS.gene061091.t1 | MTR_7g099290 | 34.177 | 237 | 95 | 4 | 1 | 176 | 153 | 389 | 1.82e-35 | 131 |
| MS.gene061091.t1 | MTR_1g070400 | 34.894 | 235 | 94 | 4 | 1 | 176 | 151 | 385 | 4.15e-35 | 130 |
| MS.gene061091.t1 | MTR_3g105200 | 35.593 | 236 | 91 | 5 | 1 | 176 | 151 | 385 | 4.61e-35 | 130 |
| MS.gene061091.t1 | MTR_3g105200 | 35.593 | 236 | 91 | 5 | 1 | 176 | 151 | 385 | 4.79e-35 | 130 |
| MS.gene061091.t1 | MTR_1g037500 | 34.454 | 238 | 94 | 4 | 1 | 176 | 153 | 390 | 6.51e-35 | 129 |
| MS.gene061091.t1 | MTR_1g070280 | 31.658 | 199 | 80 | 3 | 34 | 176 | 1 | 199 | 6.77e-24 | 98.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061091.t1 | AT3G19960 | 62.771 | 231 | 33 | 1 | 3 | 180 | 255 | 485 | 1.18e-87 | 275 |
| MS.gene061091.t1 | AT3G19960 | 62.500 | 232 | 34 | 1 | 3 | 181 | 255 | 486 | 1.11e-86 | 276 |
| MS.gene061091.t1 | AT3G19960 | 62.500 | 232 | 34 | 1 | 3 | 181 | 255 | 486 | 1.11e-86 | 276 |
| MS.gene061091.t1 | AT3G19960 | 62.500 | 232 | 34 | 1 | 3 | 181 | 255 | 486 | 1.11e-86 | 276 |
| MS.gene061091.t1 | AT1G50360 | 62.069 | 232 | 35 | 1 | 3 | 181 | 247 | 478 | 1.71e-86 | 275 |
| MS.gene061091.t1 | AT3G19960 | 56.098 | 246 | 34 | 2 | 10 | 181 | 278 | 523 | 4.46e-77 | 249 |
| MS.gene061091.t1 | AT5G54280 | 50.215 | 233 | 62 | 3 | 3 | 181 | 303 | 535 | 5.79e-63 | 210 |
| MS.gene061091.t1 | AT5G54280 | 50.215 | 233 | 62 | 3 | 3 | 181 | 113 | 345 | 7.25e-63 | 209 |
| MS.gene061091.t1 | AT4G27370 | 47.210 | 233 | 69 | 2 | 3 | 181 | 254 | 486 | 2.62e-59 | 199 |
| MS.gene061091.t1 | AT4G27370 | 47.210 | 233 | 69 | 2 | 3 | 181 | 256 | 488 | 2.76e-59 | 199 |
| MS.gene061091.t1 | AT4G27370 | 47.414 | 232 | 68 | 2 | 3 | 180 | 256 | 487 | 3.42e-59 | 199 |
| MS.gene061091.t1 | AT4G27370 | 47.414 | 232 | 68 | 2 | 3 | 180 | 256 | 487 | 3.42e-59 | 199 |
| MS.gene061091.t1 | AT1G42680 | 66.957 | 115 | 34 | 1 | 3 | 117 | 56 | 166 | 8.05e-43 | 141 |
| MS.gene061091.t1 | AT2G33240 | 34.746 | 236 | 94 | 4 | 1 | 176 | 169 | 404 | 2.30e-38 | 139 |
| MS.gene061091.t1 | AT2G33240 | 34.746 | 236 | 94 | 4 | 1 | 176 | 151 | 386 | 2.34e-38 | 139 |
| MS.gene061091.t1 | AT2G33240 | 34.746 | 236 | 94 | 4 | 1 | 176 | 169 | 404 | 2.41e-38 | 139 |
| MS.gene061091.t1 | AT2G33240 | 34.746 | 236 | 94 | 4 | 1 | 176 | 174 | 409 | 2.55e-38 | 139 |
| MS.gene061091.t1 | AT2G33240 | 34.746 | 236 | 94 | 4 | 1 | 176 | 169 | 404 | 2.63e-38 | 139 |
| MS.gene061091.t1 | AT2G33240 | 34.746 | 236 | 94 | 4 | 1 | 176 | 169 | 404 | 2.81e-38 | 139 |
| MS.gene061091.t1 | AT2G33240 | 34.746 | 236 | 94 | 4 | 1 | 176 | 169 | 404 | 2.81e-38 | 139 |
| MS.gene061091.t1 | AT5G43900 | 34.322 | 236 | 95 | 3 | 1 | 176 | 153 | 388 | 2.83e-37 | 136 |
| MS.gene061091.t1 | AT5G43900 | 34.322 | 236 | 95 | 3 | 1 | 176 | 213 | 448 | 2.86e-37 | 136 |
| MS.gene061091.t1 | AT3G58160 | 32.627 | 236 | 99 | 3 | 1 | 176 | 151 | 386 | 7.15e-37 | 135 |
| MS.gene061091.t1 | AT1G04600 | 34.322 | 236 | 95 | 4 | 1 | 176 | 152 | 387 | 7.66e-37 | 135 |
| MS.gene061091.t1 | AT3G58160 | 32.627 | 236 | 99 | 3 | 1 | 176 | 151 | 386 | 8.60e-37 | 135 |
| MS.gene061091.t1 | AT3G58160 | 32.627 | 236 | 99 | 3 | 1 | 176 | 151 | 386 | 8.60e-37 | 135 |
| MS.gene061091.t1 | AT1G17580 | 36.475 | 244 | 79 | 6 | 1 | 176 | 150 | 385 | 8.85e-37 | 135 |
| MS.gene061091.t1 | AT3G58160 | 32.627 | 236 | 99 | 3 | 1 | 176 | 151 | 386 | 1.13e-36 | 134 |
| MS.gene061091.t1 | AT3G58160 | 32.627 | 236 | 99 | 3 | 1 | 176 | 151 | 386 | 1.13e-36 | 134 |
| MS.gene061091.t1 | AT5G20490 | 35.443 | 237 | 91 | 5 | 1 | 176 | 87 | 322 | 2.84e-36 | 134 |
| MS.gene061091.t1 | AT5G20490 | 35.443 | 237 | 91 | 5 | 1 | 176 | 153 | 388 | 3.43e-36 | 133 |
| MS.gene061091.t1 | AT5G20490 | 35.443 | 237 | 91 | 5 | 1 | 176 | 152 | 387 | 3.56e-36 | 133 |
| MS.gene061091.t1 | AT1G54560 | 33.898 | 236 | 96 | 4 | 1 | 176 | 153 | 388 | 1.10e-35 | 132 |
| MS.gene061091.t1 | AT1G54560 | 33.898 | 236 | 96 | 4 | 1 | 176 | 156 | 391 | 1.21e-35 | 132 |
| MS.gene061091.t1 | AT1G08730 | 35.443 | 237 | 91 | 5 | 1 | 176 | 161 | 396 | 1.81e-35 | 131 |
| MS.gene061091.t1 | AT1G08730 | 35.443 | 237 | 91 | 5 | 1 | 176 | 153 | 388 | 1.89e-35 | 131 |
| MS.gene061091.t1 | AT5G43900 | 34.335 | 233 | 96 | 3 | 1 | 176 | 213 | 445 | 3.23e-35 | 130 |
| MS.gene061091.t1 | AT4G28710 | 35.169 | 236 | 93 | 4 | 1 | 176 | 152 | 387 | 1.80e-34 | 128 |
| MS.gene061091.t1 | AT4G33200 | 35.593 | 236 | 91 | 5 | 1 | 176 | 158 | 392 | 3.86e-34 | 127 |
| MS.gene061091.t1 | AT4G33200 | 35.593 | 236 | 91 | 5 | 1 | 176 | 158 | 392 | 3.93e-34 | 127 |
| MS.gene061091.t1 | AT4G33200 | 35.593 | 236 | 91 | 5 | 1 | 176 | 158 | 392 | 4.04e-34 | 127 |
| MS.gene061091.t1 | AT4G33200 | 35.593 | 236 | 91 | 5 | 1 | 176 | 158 | 392 | 4.05e-34 | 127 |
| MS.gene061091.t1 | AT2G31900 | 32.735 | 223 | 90 | 4 | 1 | 163 | 38 | 260 | 2.04e-33 | 125 |
| MS.gene061091.t1 | AT2G31900 | 31.780 | 236 | 101 | 4 | 1 | 176 | 153 | 388 | 2.10e-33 | 125 |
| MS.gene061091.t1 | AT2G20290 | 34.746 | 236 | 93 | 5 | 1 | 176 | 163 | 397 | 2.19e-33 | 125 |
| MS.gene061091.t1 | AT2G20290 | 34.746 | 236 | 93 | 5 | 1 | 176 | 152 | 386 | 2.25e-33 | 125 |
| MS.gene061091.t1 | AT2G20290 | 34.746 | 236 | 93 | 5 | 1 | 176 | 152 | 386 | 2.27e-33 | 125 |
| MS.gene061091.t1 | AT2G31900 | 31.780 | 236 | 101 | 4 | 1 | 176 | 153 | 388 | 2.33e-33 | 125 |
| MS.gene061091.t1 | AT2G31900 | 31.780 | 236 | 101 | 4 | 1 | 176 | 153 | 388 | 2.33e-33 | 125 |
| MS.gene061091.t1 | AT2G20290 | 34.746 | 236 | 93 | 5 | 1 | 176 | 152 | 386 | 2.37e-33 | 125 |
| MS.gene061091.t1 | AT1G04160 | 34.599 | 237 | 94 | 4 | 1 | 176 | 153 | 389 | 4.86e-33 | 124 |
| MS.gene061091.t1 | AT1G04160 | 34.599 | 237 | 94 | 4 | 1 | 176 | 153 | 389 | 5.38e-33 | 124 |
| MS.gene061091.t1 | AT2G31900 | 30.928 | 97 | 64 | 1 | 70 | 163 | 21 | 117 | 1.47e-11 | 62.8 |
Find 32 sgRNAs with CRISPR-Local
Find 67 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTGAGATAGCGTCAACTTC+TGG | 0.296103 | 1.4:+19188599 | None:intergenic |
| CAATGCTTGCTGCAGTATTA+TGG | 0.317251 | 1.4:-19189276 | MS.gene061091:CDS |
| TTACCAAAGGCTTCTAGTAT+TGG | 0.351853 | 1.4:+19189739 | None:intergenic |
| TTCAGCACTGCCAAGTTGAT+TGG | 0.374261 | 1.4:-19188691 | MS.gene061091:CDS |
| GCTGCCCTTGGTGGTGGAAG+TGG | 0.378989 | 1.4:-19189790 | MS.gene061091:CDS |
| CTTGGTCTCCTTTGCTAATG+TGG | 0.384347 | 1.4:+19189311 | None:intergenic |
| TACCTGGCTGCCCTTGGTGG+TGG | 0.421059 | 1.4:-19189796 | MS.gene061091:CDS |
| ATGCAATACCTGGCTGCCCT+TGG | 0.444392 | 1.4:-19189802 | MS.gene061091:CDS |
| ATACTAGAAGCCTTTGGTAA+TGG | 0.447037 | 1.4:-19189736 | MS.gene061091:CDS |
| CAATACCTGGCTGCCCTTGG+TGG | 0.463295 | 1.4:-19189799 | MS.gene061091:CDS |
| CTTATAATCTACATGTATAG+TGG | 0.467176 | 1.4:-19189865 | None:intergenic |
| TATAGTGGTGAGAGTGGAGC+AGG | 0.471356 | 1.4:-19189850 | MS.gene061091:CDS |
| CCAGAAGTTGACGCTATCTC+AGG | 0.480744 | 1.4:-19188599 | MS.gene061091:CDS |
| GCATTGCAAATACATTCTCT+TGG | 0.493269 | 1.4:+19189293 | None:intergenic |
| AATCCAATACTAGAAGCCTT+TGG | 0.493384 | 1.4:-19189742 | MS.gene061091:CDS |
| CATTGAGATTCACTTCATTG+AGG | 0.498407 | 1.4:-19189559 | MS.gene061091:CDS |
| TCAACTCGCAAAATGAAAGT+TGG | 0.513663 | 1.4:-19188637 | MS.gene061091:CDS |
| TGTTCAAGCTGTAGAGGATG+AGG | 0.521445 | 1.4:-19189212 | MS.gene061091:CDS |
| AATGTCACAGCCAATCAACT+TGG | 0.541437 | 1.4:+19188681 | None:intergenic |
| TTCCACCACCAAGGGCAGCC+AGG | 0.542075 | 1.4:+19189794 | None:intergenic |
| CTTGCTGCAGTATTATGGTT+GGG | 0.550850 | 1.4:-19189271 | MS.gene061091:CDS |
| GCTTGCTGCAGTATTATGGT+TGG | 0.579317 | 1.4:-19189272 | MS.gene061091:CDS |
| ATAGTGGTGAGAGTGGAGCA+GGG | 0.585236 | 1.4:-19189849 | MS.gene061091:CDS |
| AAATCATGTTCAAGCTGTAG+AGG | 0.586742 | 1.4:-19189218 | MS.gene061091:CDS |
| TACATGTATAGTGGTGAGAG+TGG | 0.600129 | 1.4:-19189856 | MS.gene061091:CDS |
| AAGGGCAGCCAGGTATTGCA+TGG | 0.617488 | 1.4:+19189804 | None:intergenic |
| TATTCCACTTCCACCACCAA+GGG | 0.629576 | 1.4:+19189786 | None:intergenic |
| GATGTTGTCCACATTAGCAA+AGG | 0.633529 | 1.4:-19189319 | MS.gene061091:CDS |
| TTGAGGACTATAAATATCTG+AGG | 0.638804 | 1.4:-19189542 | MS.gene061091:CDS |
| AGAAGAATTTCGCATAGTCA+AGG | 0.640472 | 1.4:-19189481 | MS.gene061091:intron |
| CTATTCCACTTCCACCACCA+AGG | 0.644612 | 1.4:+19189785 | None:intergenic |
| GTTCAAGCTGTAGAGGATGA+GGG | 0.655939 | 1.4:-19189211 | MS.gene061091:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGTAAGAATCAATACATAT+AGG | + | chr1.4:19188783-19188802 | None:intergenic | 20.0% |
| !! | TAATTTGATTGAACTTTACA+GGG | - | chr1.4:19188856-19188875 | MS.gene061091:intron | 20.0% |
| !!! | TATATGTATTGATTCTTACT+TGG | - | chr1.4:19188782-19188801 | MS.gene061091:intron | 20.0% |
| !!! | TTAATTTGATTGAACTTTAC+AGG | - | chr1.4:19188855-19188874 | MS.gene061091:intron | 20.0% |
| ! | AACTTATACCTCGATTAAAA+AGG | - | chr1.4:19189700-19189719 | MS.gene061091:intron | 25.0% |
| ! | ACATATGTAAGCTATAGTTA+TGG | + | chr1.4:19189619-19189638 | None:intergenic | 25.0% |
| ! | ATAACTATAGCTTACATATG+TGG | - | chr1.4:19189618-19189637 | MS.gene061091:intron | 25.0% |
| ! | CATATGAACGAAAAATAAAG+AGG | + | chr1.4:19189504-19189523 | None:intergenic | 25.0% |
| ! | GAATCAATACATATAGGATT+AGG | + | chr1.4:19188777-19188796 | None:intergenic | 25.0% |
| ! | TAATAAAAAACCTCAAGAAC+AGG | + | chr1.4:19188808-19188827 | None:intergenic | 25.0% |
| ! | TTTCTTGTAAATTAGTGAAG+AGG | - | chr1.4:19189427-19189446 | MS.gene061091:intron | 25.0% |
| !! | ACAAAATTCCTTTTTAATCG+AGG | + | chr1.4:19189711-19189730 | None:intergenic | 25.0% |
| !!! | ATTATTTCTGCTTTGTGTAA+TGG | - | chr1.4:19189062-19189081 | MS.gene061091:intron | 25.0% |
| !!! | CTCTTTATTTTTCGTTCATA+TGG | - | chr1.4:19189502-19189521 | MS.gene061091:CDS | 25.0% |
| !!! | GAAAAAGTTGCAGTTTTTTA+AGG | - | chr1.4:19189475-19189494 | MS.gene061091:intron | 25.0% |
| CTTACATCATAACTTCACAA+GGG | + | chr1.4:19189556-19189575 | None:intergenic | 30.0% | |
| TCTTACATCATAACTTCACA+AGG | + | chr1.4:19189557-19189576 | None:intergenic | 30.0% | |
| TTGAGGACTATAAATATCTG+AGG | - | chr1.4:19188902-19188921 | MS.gene061091:intron | 30.0% | |
| TTGTTCCATGACTTCTTAAA+GGG | - | chr1.4:19189727-19189746 | MS.gene061091:CDS | 30.0% | |
| TTTGTTCCATGACTTCTTAA+AGG | - | chr1.4:19189726-19189745 | MS.gene061091:CDS | 30.0% | |
| ! | CAATGTTTTTCCATTACCAA+AGG | + | chr1.4:19188721-19188740 | None:intergenic | 30.0% |
| ! | CACATGAACTTTTTAATACC+AGG | - | chr1.4:19189094-19189113 | MS.gene061091:intron | 30.0% |
| AAAAATAGCCATGCAATACC+TGG | - | chr1.4:19188632-19188651 | MS.gene061091:CDS | 35.0% | |
| AAATCATGTTCAAGCTGTAG+AGG | - | chr1.4:19189226-19189245 | MS.gene061091:CDS | 35.0% | |
| AATCCAATACTAGAAGCCTT+TGG | - | chr1.4:19188702-19188721 | MS.gene061091:intron | 35.0% | |
| AGAAGAATTTCGCATAGTCA+AGG | - | chr1.4:19188963-19188982 | MS.gene061091:intron | 35.0% | |
| ATACTAGAAGCCTTTGGTAA+TGG | - | chr1.4:19188708-19188727 | MS.gene061091:intron | 35.0% | |
| ATTTCCAGAATCTCTACTGA+TGG | - | chr1.4:19189261-19189280 | MS.gene061091:CDS | 35.0% | |
| CATTGAGATTCACTTCATTG+AGG | - | chr1.4:19188885-19188904 | MS.gene061091:intron | 35.0% | |
| GCATTGCAAATACATTCTCT+TGG | + | chr1.4:19189154-19189173 | None:intergenic | 35.0% | |
| GCTAAAAACTATTCCATCGT+AGG | + | chr1.4:19189387-19189406 | None:intergenic | 35.0% | |
| TCAACTCGCAAAATGAAAGT+TGG | - | chr1.4:19189807-19189826 | MS.gene061091:CDS | 35.0% | |
| TCATTTAGCATATCCTACGA+TGG | - | chr1.4:19189371-19189390 | MS.gene061091:intron | 35.0% | |
| TTACCAAAGGCTTCTAGTAT+TGG | + | chr1.4:19188708-19188727 | None:intergenic | 35.0% | |
| ! | AGCTTTTGCATAACAAGTTG+TGG | + | chr1.4:19189307-19189326 | None:intergenic | 35.0% |
| ! | TTTTTAATACCAGGATGCTC+TGG | - | chr1.4:19189103-19189122 | MS.gene061091:intron | 35.0% |
| AATGTCACAGCCAATCAACT+TGG | + | chr1.4:19189766-19189785 | None:intergenic | 40.0% | |
| CTTGCTGCAGTATTATGGTT+GGG | - | chr1.4:19189173-19189192 | MS.gene061091:intron | 40.0% | |
| GATGTTGTCCACATTAGCAA+AGG | - | chr1.4:19189125-19189144 | MS.gene061091:intron | 40.0% | |
| GATTCCATCAGTAGAGATTC+TGG | + | chr1.4:19189268-19189287 | None:intergenic | 40.0% | |
| TTCTGCTTTGTGTAATGGCT+CGG | - | chr1.4:19189067-19189086 | MS.gene061091:intron | 40.0% | |
| ! | AACAGCCCTTTAAGAAGTCA+TGG | + | chr1.4:19189735-19189754 | None:intergenic | 40.0% |
| ! | CAATGCTTGCTGCAGTATTA+TGG | - | chr1.4:19189168-19189187 | MS.gene061091:intron | 40.0% |
| AAAAGCTCCGTCTAGTGCTT+TGG | - | chr1.4:19189320-19189339 | MS.gene061091:CDS | 45.0% | |
| AAAGCTCCGTCTAGTGCTTT+GGG | - | chr1.4:19189321-19189340 | MS.gene061091:CDS | 45.0% | |
| CATCATAACTTCACAAGGGC+AGG | + | chr1.4:19189552-19189571 | None:intergenic | 45.0% | |
| CTTGGTCTCCTTTGCTAATG+TGG | + | chr1.4:19189136-19189155 | None:intergenic | 45.0% | |
| GTTCAAGCTGTAGAGGATGA+GGG | - | chr1.4:19189233-19189252 | MS.gene061091:CDS | 45.0% | |
| TATTCCACTTCCACCACCAA+GGG | + | chr1.4:19188661-19188680 | None:intergenic | 45.0% | |
| TCTTACTTGGCCTGTTCTTG+AGG | - | chr1.4:19188795-19188814 | MS.gene061091:intron | 45.0% | |
| TGTTCAAGCTGTAGAGGATG+AGG | - | chr1.4:19189232-19189251 | MS.gene061091:CDS | 45.0% | |
| ! | GCTTGCTGCAGTATTATGGT+TGG | - | chr1.4:19189172-19189191 | MS.gene061091:intron | 45.0% |
| !! | TTCAGCACTGCCAAGTTGAT+TGG | - | chr1.4:19189753-19189772 | MS.gene061091:CDS | 45.0% |
| ATAGTGGTGAGAGTGGAGCA+GGG | - | chr1.4:19188595-19188614 | MS.gene061091:CDS | 50.0% | |
| CCAGAAGTTGACGCTATCTC+AGG | - | chr1.4:19189845-19189864 | MS.gene061091:CDS | 50.0% | |
| CCTGAGATAGCGTCAACTTC+TGG | + | chr1.4:19189848-19189867 | None:intergenic | 50.0% | |
| CTATTCCACTTCCACCACCA+AGG | + | chr1.4:19188662-19188681 | None:intergenic | 50.0% | |
| TATAGTGGTGAGAGTGGAGC+AGG | - | chr1.4:19188594-19188613 | MS.gene061091:CDS | 50.0% | |
| ! | ACCAAGCCCAAAGCACTAGA+CGG | + | chr1.4:19189330-19189349 | None:intergenic | 50.0% |
| ATGCAATACCTGGCTGCCCT+TGG | - | chr1.4:19188642-19188661 | MS.gene061091:CDS | 55.0% | |
| ! | AAGGGCAGCCAGGTATTGCA+TGG | + | chr1.4:19188643-19188662 | None:intergenic | 55.0% |
| ! | GGACAACATCCAGAGCATCC+TGG | + | chr1.4:19189115-19189134 | None:intergenic | 55.0% |
| ! | TCCGTCTAGTGCTTTGGGCT+TGG | - | chr1.4:19189326-19189345 | MS.gene061091:CDS | 55.0% |
| CAATACCTGGCTGCCCTTGG+TGG | - | chr1.4:19188645-19188664 | MS.gene061091:CDS | 60.0% | |
| TACCTGGCTGCCCTTGGTGG+TGG | - | chr1.4:19188648-19188667 | MS.gene061091:CDS | 65.0% | |
| TTCCACCACCAAGGGCAGCC+AGG | + | chr1.4:19188653-19188672 | None:intergenic | 65.0% | |
| !! | GCTGCCCTTGGTGGTGGAAG+TGG | - | chr1.4:19188654-19188673 | MS.gene061091:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 19188591 | 19189875 | 19188591 | ID=MS.gene061091 |
| chr1.4 | mRNA | 19188591 | 19189875 | 19188591 | ID=MS.gene061091.t1;Parent=MS.gene061091 |
| chr1.4 | exon | 19189702 | 19189875 | 19189702 | ID=MS.gene061091.t1.exon1;Parent=MS.gene061091.t1 |
| chr1.4 | CDS | 19189702 | 19189875 | 19189702 | ID=cds.MS.gene061091.t1;Parent=MS.gene061091.t1 |
| chr1.4 | exon | 19189482 | 19189589 | 19189482 | ID=MS.gene061091.t1.exon2;Parent=MS.gene061091.t1 |
| chr1.4 | CDS | 19189482 | 19189589 | 19189482 | ID=cds.MS.gene061091.t1;Parent=MS.gene061091.t1 |
| chr1.4 | exon | 19189212 | 19189350 | 19189212 | ID=MS.gene061091.t1.exon3;Parent=MS.gene061091.t1 |
| chr1.4 | CDS | 19189212 | 19189350 | 19189212 | ID=cds.MS.gene061091.t1;Parent=MS.gene061091.t1 |
| chr1.4 | exon | 19188591 | 19188718 | 19188591 | ID=MS.gene061091.t1.exon4;Parent=MS.gene061091.t1 |
| chr1.4 | CDS | 19188591 | 19188718 | 19188591 | ID=cds.MS.gene061091.t1;Parent=MS.gene061091.t1 |
| Gene Sequence |
| Protein sequence |
