Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065181.t1 | XP_013464731.1 | 89.4 | 385 | 40 | 1 | 1 | 384 | 1 | 385 | 4.70E-180 | 640.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065181.t1 | Q84WQ5 | 50.9 | 393 | 177 | 7 | 1 | 382 | 1 | 388 | 2.4e-95 | 350.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065181.t1 | A0A072VAY1 | 89.4 | 385 | 40 | 1 | 1 | 384 | 1 | 385 | 3.4e-180 | 640.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056266 | MS.gene065181 | -0.801245 | 9.86E-49 | -1.69E-46 |
| MS.gene059855 | MS.gene065181 | 0.917947 | 2.85E-86 | -1.69E-46 |
| MS.gene061044 | MS.gene065181 | 0.801299 | 9.62E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065181.t1 | MTR_2g079650 | 91.688 | 385 | 31 | 1 | 1 | 384 | 1 | 385 | 0.0 | 681 |
| MS.gene065181.t1 | MTR_2g079630 | 80.977 | 389 | 69 | 2 | 1 | 384 | 1 | 389 | 0.0 | 610 |
| MS.gene065181.t1 | MTR_2g013110 | 47.146 | 403 | 182 | 7 | 1 | 382 | 1 | 393 | 9.73e-115 | 340 |
| MS.gene065181.t1 | MTR_7g079680 | 28.979 | 421 | 227 | 13 | 1 | 374 | 1 | 396 | 1.35e-33 | 129 |
| MS.gene065181.t1 | MTR_7g079680 | 32.500 | 240 | 119 | 9 | 154 | 374 | 61 | 276 | 1.73e-21 | 94.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065181.t1 | AT4G27460 | 52.030 | 394 | 171 | 9 | 1 | 382 | 1 | 388 | 5.80e-119 | 350 |
| MS.gene065181.t1 | AT5G53750 | 50.367 | 409 | 172 | 9 | 1 | 382 | 1 | 405 | 5.81e-117 | 346 |
| MS.gene065181.t1 | AT1G65320 | 27.869 | 427 | 227 | 13 | 1 | 374 | 1 | 399 | 3.33e-29 | 117 |
Find 87 sgRNAs with CRISPR-Local
Find 118 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAGCTTGAATCTTCTTCT+AGG | 0.311891 | 2.4:+17994459 | MS.gene065181:CDS |
| ACGAAACTTTCGTCAGTGTT+TGG | 0.318070 | 2.4:+17994276 | MS.gene065181:CDS |
| TTACTATTCCCCTGCGTCTT+CGG | 0.340419 | 2.4:+17994990 | MS.gene065181:CDS |
| TTCTAAAGCTCTTAAAGCTT+TGG | 0.341556 | 2.4:+17994400 | MS.gene065181:CDS |
| TAATCAATGGCGAGCACATC+GGG | 0.342837 | 2.4:-17994970 | None:intergenic |
| AAGGATGAAGGAGAAGAATT+TGG | 0.349350 | 2.4:+17995224 | MS.gene065181:CDS |
| TTTGTCCGCAGGGGACTTGA+TGG | 0.380969 | 2.4:+17995149 | MS.gene065181:CDS |
| ACGTTGAAATAGACTTCAAC+GGG | 0.384466 | 2.4:-17994211 | None:intergenic |
| GACAGCAATCAAAGAGCTCT+TGG | 0.386944 | 2.4:-17995409 | None:intergenic |
| AGATAACTCATGTGTCAAAA+AGG | 0.390942 | 2.4:-17994168 | None:intergenic |
| AGGTTCTTGCTTGGTTCCAT+TGG | 0.395496 | 2.4:+17994895 | MS.gene065181:CDS |
| AAAGCTTTAAGAGCTTTAGA+AGG | 0.397669 | 2.4:-17994398 | None:intergenic |
| GAGGAGAGTCCGACGAGGTC+AGG | 0.420723 | 2.4:+17995318 | MS.gene065181:CDS |
| GAGGATGATTGCAGCTTAGT+TGG | 0.425795 | 2.4:+17995477 | MS.gene065181:CDS |
| CGCAAGGTCATCGAGCTATT+CGG | 0.427267 | 2.4:+17995347 | MS.gene065181:CDS |
| CTCATAGAGTGAACTACTTG+TGG | 0.452341 | 2.4:+17995448 | MS.gene065181:CDS |
| GATGATGTCAAGAGCATCAA+TGG | 0.458076 | 2.4:-17994944 | None:intergenic |
| TCATAGAGTGAACTACTTGT+GGG | 0.462004 | 2.4:+17995449 | MS.gene065181:CDS |
| AGCCATTGATCTTATACTCC+AGG | 0.463049 | 2.4:+17994735 | MS.gene065181:CDS |
| TTCTTTGACCGGTGATGTGT+TGG | 0.469146 | 2.4:+17995278 | MS.gene065181:CDS |
| TTCAGCACCATTGTGGTTGT+TGG | 0.483724 | 2.4:-17994842 | None:intergenic |
| GATGTGATCAGGTTCTTGCT+TGG | 0.488754 | 2.4:+17994886 | MS.gene065181:CDS |
| GAACTACTTGTGGGTTATTG+AGG | 0.502090 | 2.4:+17995458 | MS.gene065181:CDS |
| ACAAGTCTCACAAGATCCTC+TGG | 0.503032 | 2.4:-17995195 | None:intergenic |
| GACAGTGATGGGACATTCAT+CGG | 0.505323 | 2.4:+17995066 | MS.gene065181:CDS |
| AAGTTTCGTCGGAGCTTCTG+AGG | 0.513062 | 2.4:-17994262 | None:intergenic |
| TCCCTGGAGTATAAGATCAA+TGG | 0.516231 | 2.4:-17994737 | None:intergenic |
| GCGATCACAACTTTGTCCGC+AGG | 0.523015 | 2.4:+17995138 | MS.gene065181:CDS |
| ACAGCAATCAAAGAGCTCTT+GGG | 0.523505 | 2.4:-17995408 | None:intergenic |
| ACTTGTAAAGGCAAGGATGA+AGG | 0.531207 | 2.4:+17995212 | MS.gene065181:CDS |
| CTTCAACAGCCGAAGACGCA+GGG | 0.535193 | 2.4:-17994999 | None:intergenic |
| GACTTCAATTGCCTCGGCAA+CGG | 0.536075 | 2.4:-17994240 | None:intergenic |
| TCTGAGGACTTCAATTGCCT+CGG | 0.537513 | 2.4:-17994246 | None:intergenic |
| TGCGGTCGTTGTCAATGTGT+TGG | 0.538310 | 2.4:+17994317 | MS.gene065181:CDS |
| TTGCAATTGTCGACAGTGAT+GGG | 0.541246 | 2.4:+17995055 | MS.gene065181:CDS |
| GTTGCAATTGTCGACAGTGA+TGG | 0.542326 | 2.4:+17995054 | MS.gene065181:CDS |
| CGCAGGGGAATAGTAATCAA+TGG | 0.542783 | 2.4:-17994983 | None:intergenic |
| GCTTCAACAGCCGAAGACGC+AGG | 0.544746 | 2.4:-17995000 | None:intergenic |
| TAACACAAGAGGATGTGATC+AGG | 0.550433 | 2.4:+17994875 | MS.gene065181:CDS |
| GCGGTCGTTGTCAATGTGTT+GGG | 0.553823 | 2.4:+17994318 | MS.gene065181:CDS |
| AACGTTGGCTACCGTTGCCG+AGG | 0.562278 | 2.4:+17994229 | MS.gene065181:CDS |
| ACAACAAGACCATCAACCTT+AGG | 0.565226 | 2.4:-17994437 | None:intergenic |
| TCACAACATGCAAGCGTGAA+AGG | 0.565398 | 2.4:-17995099 | None:intergenic |
| CGAGGTCAGGAAAGCACGCA+AGG | 0.570009 | 2.4:+17995331 | MS.gene065181:CDS |
| GCGTGCTTTCCTGACCTCGT+CGG | 0.575337 | 2.4:-17995327 | None:intergenic |
| GGATCTTGTGAGACTTGTAA+AGG | 0.582402 | 2.4:+17995200 | MS.gene065181:CDS |
| TTGTGCAAGCGACTTTGAGA+TGG | 0.582874 | 2.4:-17995022 | None:intergenic |
| GTTGAAGTCTATTTCAACGT+TGG | 0.583473 | 2.4:+17994214 | MS.gene065181:CDS |
| GTCGCTTGCACAACAAACTT+CGG | 0.584024 | 2.4:+17995032 | MS.gene065181:CDS |
| GCCATTGATCTTATACTCCA+GGG | 0.586242 | 2.4:+17994736 | MS.gene065181:CDS |
| TTGTGAGACTTGTAAAGGCA+AGG | 0.586500 | 2.4:+17995205 | MS.gene065181:CDS |
| GAGTGGAGTGAAGAGGCCAA+TGG | 0.588041 | 2.4:-17994911 | None:intergenic |
| GACAACGACCGCATTCAGAA+TGG | 0.588165 | 2.4:-17994307 | None:intergenic |
| GAGTTATCTGAACTCTGTCT+CGG | 0.589665 | 2.4:+17994182 | MS.gene065181:CDS |
| GTCTCACAAGATCCTCTGGT+GGG | 0.595536 | 2.4:-17995191 | None:intergenic |
| ATGCAGAGAGTGGAGTGAAG+AGG | 0.601482 | 2.4:-17994918 | None:intergenic |
| ATTCTGTTGGTTAACACAAG+AGG | 0.602333 | 2.4:+17994864 | MS.gene065181:CDS |
| CGATCACAACTTTGTCCGCA+GGG | 0.602716 | 2.4:+17995139 | MS.gene065181:CDS |
| AGACGAGGCCAACACATCAC+CGG | 0.605949 | 2.4:-17995286 | None:intergenic |
| TCAATGGAGTATGCAGAGAG+TGG | 0.607007 | 2.4:-17994928 | None:intergenic |
| TGGGTCACCACATTCAATGT+AGG | 0.612788 | 2.4:-17995172 | None:intergenic |
| AACACTGACGAAAGTTTCGT+CGG | 0.613598 | 2.4:-17994273 | None:intergenic |
| CGTCGGACTCTCCTCGTCAG+AGG | 0.614308 | 2.4:-17995310 | None:intergenic |
| AACAGAATTCAGCACCATTG+TGG | 0.615037 | 2.4:-17994849 | None:intergenic |
| AACGTTGAAATAGACTTCAA+CGG | 0.620008 | 2.4:-17994212 | None:intergenic |
| ATGTGTTGGGAAAGTTTGCA+TGG | 0.628591 | 2.4:+17994331 | MS.gene065181:CDS |
| GTAATCAATGGCGAGCACAT+CGG | 0.628862 | 2.4:-17994971 | None:intergenic |
| CTCCTCGTCAGAGGAAGACG+AGG | 0.630235 | 2.4:-17995301 | None:intergenic |
| TGCGGACAAAGTTGTGATCG+CGG | 0.639568 | 2.4:-17995136 | None:intergenic |
| ACAATGGTGCTGAATTCTGT+TGG | 0.643018 | 2.4:+17994851 | MS.gene065181:CDS |
| CCAGGGAGCACAAAATCTTG+TGG | 0.643896 | 2.4:+17994753 | MS.gene065181:CDS |
| TCAACAACCAACAACCACAA+TGG | 0.661007 | 2.4:+17994835 | MS.gene065181:CDS |
| AGTCTCACAAGATCCTCTGG+TGG | 0.661172 | 2.4:-17995192 | None:intergenic |
| TTCAACAGCCGAAGACGCAG+GGG | 0.666030 | 2.4:-17994998 | None:intergenic |
| AGCTGTGACCATTCTGAATG+CGG | 0.668057 | 2.4:+17994299 | MS.gene065181:CDS |
| GCTATTCGGCAAGATTTGTG+AGG | 0.668957 | 2.4:+17995361 | MS.gene065181:CDS |
| GGCCTCGTCTTCCTCTGACG+AGG | 0.669844 | 2.4:+17995299 | MS.gene065181:CDS |
| AAGATTTGTGAGGAATGTAG+AGG | 0.675720 | 2.4:+17995371 | MS.gene065181:CDS |
| GCTTGCATGTTGTGATGAGA+CGG | 0.686166 | 2.4:+17995107 | MS.gene065181:CDS |
| GTTGAAATAGACTTCAACGG+GGG | 0.695337 | 2.4:-17994209 | None:intergenic |
| TTGATGGCCTACATTGAATG+TGG | 0.705015 | 2.4:+17995165 | MS.gene065181:CDS |
| TGAATGTGGTGACCCACCAG+AGG | 0.705333 | 2.4:+17995179 | MS.gene065181:CDS |
| CTGACGAGGAGAGTCCGACG+AGG | 0.740341 | 2.4:+17995313 | MS.gene065181:CDS |
| GATCACAACTTTGTCCGCAG+GGG | 0.750662 | 2.4:+17995140 | MS.gene065181:CDS |
| AATCAATGGCGAGCACATCG+GGG | 0.755270 | 2.4:-17994969 | None:intergenic |
| GTAGGCCATCAAGTCCCCTG+CGG | 0.766683 | 2.4:-17995154 | None:intergenic |
| CGTTGAAATAGACTTCAACG+GGG | 0.770457 | 2.4:-17994210 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GATTAAGAATTTTAATTAAT+TGG | + | chr2.4:17994554-17994573 | MS.gene065181:intron | 10.0% |
| !!! | TAAGAATTTTAATTAATTGG+TGG | + | chr2.4:17994557-17994576 | MS.gene065181:intron | 15.0% |
| !!! | TTTTAATTAATTGGTGGTAT+TGG | + | chr2.4:17994563-17994582 | MS.gene065181:intron | 20.0% |
| ! | ACATCAAAATAACAAGAATG+AGG | - | chr2.4:17994701-17994720 | None:intergenic | 25.0% |
| ! | CATCAAAATAACAAGAATGA+GGG | - | chr2.4:17994700-17994719 | None:intergenic | 25.0% |
| !! | TACGTTTTCTAATATCTTGA+AGG | + | chr2.4:17995506-17995525 | MS.gene065181:CDS | 25.0% |
| !!! | ATAATTTTGACTTCTTTGAC+CGG | + | chr2.4:17995267-17995286 | MS.gene065181:CDS | 25.0% |
| AACGTTGAAATAGACTTCAA+CGG | - | chr2.4:17994215-17994234 | None:intergenic | 30.0% | |
| AGATAACTCATGTGTCAAAA+AGG | - | chr2.4:17994171-17994190 | None:intergenic | 30.0% | |
| ! | ATTTTGCAAACAAAAAGAGG+TGG | + | chr2.4:17994781-17994800 | MS.gene065181:CDS | 30.0% |
| ! | CCAATTTTGCAAACAAAAAG+AGG | + | chr2.4:17994778-17994797 | MS.gene065181:CDS | 30.0% |
| ! | GAAGGACATAAAAGATTTTC+TGG | - | chr2.4:17994383-17994402 | None:intergenic | 30.0% |
| !! | AAAGCTTTAAGAGCTTTAGA+AGG | - | chr2.4:17994401-17994420 | None:intergenic | 30.0% |
| !! | CCTCTTTTTGTTTGCAAAAT+TGG | - | chr2.4:17994781-17994800 | None:intergenic | 30.0% |
| !! | TTCTAAAGCTCTTAAAGCTT+TGG | + | chr2.4:17994400-17994419 | MS.gene065181:CDS | 30.0% |
| !!! | AAAGATTTTCTGGTTTGCAA+AGG | - | chr2.4:17994373-17994392 | None:intergenic | 30.0% |
| AAGATTTGTGAGGAATGTAG+AGG | + | chr2.4:17995371-17995390 | MS.gene065181:CDS | 35.0% | |
| AAGGATGAAGGAGAAGAATT+TGG | + | chr2.4:17995224-17995243 | MS.gene065181:CDS | 35.0% | |
| ACGTTGAAATAGACTTCAAC+GGG | - | chr2.4:17994214-17994233 | None:intergenic | 35.0% | |
| CAAAAAGAGGTGGTATTTCA+AGG | + | chr2.4:17994791-17994810 | MS.gene065181:CDS | 35.0% | |
| GTTGAAGTCTATTTCAACGT+TGG | + | chr2.4:17994214-17994233 | MS.gene065181:CDS | 35.0% | |
| TCATAGAGTGAACTACTTGT+GGG | + | chr2.4:17995449-17995468 | MS.gene065181:CDS | 35.0% | |
| TTCAGCTTGAATCTTCTTCT+AGG | + | chr2.4:17994459-17994478 | MS.gene065181:CDS | 35.0% | |
| ! | ATTCTGTTGGTTAACACAAG+AGG | + | chr2.4:17994864-17994883 | MS.gene065181:CDS | 35.0% |
| !! | ATTAATTGGTGGTATTGGCT+TGG | + | chr2.4:17994568-17994587 | MS.gene065181:intron | 35.0% |
| !! | TTAATTGGTGGTATTGGCTT+GGG | + | chr2.4:17994569-17994588 | MS.gene065181:intron | 35.0% |
| AACACTGACGAAAGTTTCGT+CGG | - | chr2.4:17994276-17994295 | None:intergenic | 40.0% | |
| AACAGAATTCAGCACCATTG+TGG | - | chr2.4:17994852-17994871 | None:intergenic | 40.0% | |
| ACAACAAGACCATCAACCTT+AGG | - | chr2.4:17994440-17994459 | None:intergenic | 40.0% | |
| ACAGCAATCAAAGAGCTCTT+GGG | - | chr2.4:17995411-17995430 | None:intergenic | 40.0% | |
| ACGAAACTTTCGTCAGTGTT+TGG | + | chr2.4:17994276-17994295 | MS.gene065181:CDS | 40.0% | |
| ACTTGTAAAGGCAAGGATGA+AGG | + | chr2.4:17995212-17995231 | MS.gene065181:CDS | 40.0% | |
| AGCCATTGATCTTATACTCC+AGG | + | chr2.4:17994735-17994754 | MS.gene065181:CDS | 40.0% | |
| ATGTGTTGGGAAAGTTTGCA+TGG | + | chr2.4:17994331-17994350 | MS.gene065181:CDS | 40.0% | |
| CGTTGAAATAGACTTCAACG+GGG | - | chr2.4:17994213-17994232 | None:intergenic | 40.0% | |
| CTCATAGAGTGAACTACTTG+TGG | + | chr2.4:17995448-17995467 | MS.gene065181:CDS | 40.0% | |
| GAGTTATCTGAACTCTGTCT+CGG | + | chr2.4:17994182-17994201 | MS.gene065181:CDS | 40.0% | |
| GCCATTGATCTTATACTCCA+GGG | + | chr2.4:17994736-17994755 | MS.gene065181:CDS | 40.0% | |
| GGATCTTGTGAGACTTGTAA+AGG | + | chr2.4:17995200-17995219 | MS.gene065181:CDS | 40.0% | |
| GTTGAAATAGACTTCAACGG+GGG | - | chr2.4:17994212-17994231 | None:intergenic | 40.0% | |
| TAACACAAGAGGATGTGATC+AGG | + | chr2.4:17994875-17994894 | MS.gene065181:CDS | 40.0% | |
| TCAACAACCAACAACCACAA+TGG | + | chr2.4:17994835-17994854 | MS.gene065181:CDS | 40.0% | |
| TCCCTGGAGTATAAGATCAA+TGG | - | chr2.4:17994740-17994759 | None:intergenic | 40.0% | |
| TTGCAATTGTCGACAGTGAT+GGG | + | chr2.4:17995055-17995074 | MS.gene065181:CDS | 40.0% | |
| TTGTGAGACTTGTAAAGGCA+AGG | + | chr2.4:17995205-17995224 | MS.gene065181:CDS | 40.0% | |
| ! | ACAATGGTGCTGAATTCTGT+TGG | + | chr2.4:17994851-17994870 | MS.gene065181:CDS | 40.0% |
| ! | GAACTACTTGTGGGTTATTG+AGG | + | chr2.4:17995458-17995477 | MS.gene065181:CDS | 40.0% |
| ! | TTGATGGCCTACATTGAATG+TGG | + | chr2.4:17995165-17995184 | MS.gene065181:CDS | 40.0% |
| !! | GATGATGTCAAGAGCATCAA+TGG | - | chr2.4:17994947-17994966 | None:intergenic | 40.0% |
| !! | GGTTTCTGTAGTTTTGCCTA+AGG | + | chr2.4:17994421-17994440 | MS.gene065181:CDS | 40.0% |
| !! | GTAGTTTTGCCTAAGGTTGA+TGG | + | chr2.4:17994428-17994447 | MS.gene065181:CDS | 40.0% |
| ACAAGTCTCACAAGATCCTC+TGG | - | chr2.4:17995198-17995217 | None:intergenic | 45.0% | |
| AGCTGTGACCATTCTGAATG+CGG | + | chr2.4:17994299-17994318 | MS.gene065181:CDS | 45.0% | |
| AGGTTCTTGCTTGGTTCCAT+TGG | + | chr2.4:17994895-17994914 | MS.gene065181:CDS | 45.0% | |
| CGCAGGGGAATAGTAATCAA+TGG | - | chr2.4:17994986-17995005 | None:intergenic | 45.0% | |
| GACAGCAATCAAAGAGCTCT+TGG | - | chr2.4:17995412-17995431 | None:intergenic | 45.0% | |
| GAGGATGATTGCAGCTTAGT+TGG | + | chr2.4:17995477-17995496 | MS.gene065181:CDS | 45.0% | |
| GATGTGATCAGGTTCTTGCT+TGG | + | chr2.4:17994886-17994905 | MS.gene065181:CDS | 45.0% | |
| GCTAAATAGCCCACCCAAAT+TGG | - | chr2.4:17994645-17994664 | None:intergenic | 45.0% | |
| GCTATTCGGCAAGATTTGTG+AGG | + | chr2.4:17995361-17995380 | MS.gene065181:CDS | 45.0% | |
| GCTTGCATGTTGTGATGAGA+CGG | + | chr2.4:17995107-17995126 | MS.gene065181:CDS | 45.0% | |
| GTAATCAATGGCGAGCACAT+CGG | - | chr2.4:17994974-17994993 | None:intergenic | 45.0% | |
| GTCGCTTGCACAACAAACTT+CGG | + | chr2.4:17995032-17995051 | MS.gene065181:CDS | 45.0% | |
| GTTGCAATTGTCGACAGTGA+TGG | + | chr2.4:17995054-17995073 | MS.gene065181:CDS | 45.0% | |
| TAATCAATGGCGAGCACATC+GGG | - | chr2.4:17994973-17994992 | None:intergenic | 45.0% | |
| TCAATGGAGTATGCAGAGAG+TGG | - | chr2.4:17994931-17994950 | None:intergenic | 45.0% | |
| TCACAACATGCAAGCGTGAA+AGG | - | chr2.4:17995102-17995121 | None:intergenic | 45.0% | |
| TCTGAGGACTTCAATTGCCT+CGG | - | chr2.4:17994249-17994268 | None:intergenic | 45.0% | |
| TGGGTCACCACATTCAATGT+AGG | - | chr2.4:17995175-17995194 | None:intergenic | 45.0% | |
| TTACTATTCCCCTGCGTCTT+CGG | + | chr2.4:17994990-17995009 | MS.gene065181:CDS | 45.0% | |
| TTCAGCACCATTGTGGTTGT+TGG | - | chr2.4:17994845-17994864 | None:intergenic | 45.0% | |
| TTCTTTGACCGGTGATGTGT+TGG | + | chr2.4:17995278-17995297 | MS.gene065181:CDS | 45.0% | |
| ! | ATTCTCTCCGGTGCCAATTT+GGG | + | chr2.4:17994629-17994648 | MS.gene065181:intron | 45.0% |
| ! | GACAGTGATGGGACATTCAT+CGG | + | chr2.4:17995066-17995085 | MS.gene065181:CDS | 45.0% |
| ! | TTGTGCAAGCGACTTTGAGA+TGG | - | chr2.4:17995025-17995044 | None:intergenic | 45.0% |
| AAGTTTCGTCGGAGCTTCTG+AGG | - | chr2.4:17994265-17994284 | None:intergenic | 50.0% | |
| AATCAATGGCGAGCACATCG+GGG | - | chr2.4:17994972-17994991 | None:intergenic | 50.0% | |
| AGTCTCACAAGATCCTCTGG+TGG | - | chr2.4:17995195-17995214 | None:intergenic | 50.0% | |
| ATGCAGAGAGTGGAGTGAAG+AGG | - | chr2.4:17994921-17994940 | None:intergenic | 50.0% | |
| CGATCACAACTTTGTCCGCA+GGG | + | chr2.4:17995139-17995158 | MS.gene065181:CDS | 50.0% | |
| CGCAAGGTCATCGAGCTATT+CGG | + | chr2.4:17995347-17995366 | MS.gene065181:CDS | 50.0% | |
| GAATCGAACCTGAGACCTTG+CGG | - | chr2.4:17994613-17994632 | None:intergenic | 50.0% | |
| GACAACGACCGCATTCAGAA+TGG | - | chr2.4:17994310-17994329 | None:intergenic | 50.0% | |
| GACTTCAATTGCCTCGGCAA+CGG | - | chr2.4:17994243-17994262 | None:intergenic | 50.0% | |
| GATCACAACTTTGTCCGCAG+GGG | + | chr2.4:17995140-17995159 | MS.gene065181:CDS | 50.0% | |
| GCGGTCGTTGTCAATGTGTT+GGG | + | chr2.4:17994318-17994337 | MS.gene065181:CDS | 50.0% | |
| GTCTCACAAGATCCTCTGGT+GGG | - | chr2.4:17995194-17995213 | None:intergenic | 50.0% | |
| GTCTCAGGTTCGATTCTCTC+CGG | + | chr2.4:17994617-17994636 | MS.gene065181:intron | 50.0% | |
| TGCGGACAAAGTTGTGATCG+CGG | - | chr2.4:17995139-17995158 | None:intergenic | 50.0% | |
| TGCGGTCGTTGTCAATGTGT+TGG | + | chr2.4:17994317-17994336 | MS.gene065181:CDS | 50.0% | |
| ! | CCACAAGATTTTGTGCTCCC+TGG | - | chr2.4:17994756-17994775 | None:intergenic | 50.0% |
| ! | CCAGGGAGCACAAAATCTTG+TGG | + | chr2.4:17994753-17994772 | MS.gene065181:CDS | 50.0% |
| ! | GATTCTCTCCGGTGCCAATT+TGG | + | chr2.4:17994628-17994647 | MS.gene065181:intron | 50.0% |
| !! | GTGGTATTGGCTTGGGTCTT+GGG | + | chr2.4:17994576-17994595 | MS.gene065181:intron | 50.0% |
| AGACGAGGCCAACACATCAC+CGG | - | chr2.4:17995289-17995308 | None:intergenic | 55.0% | |
| CTTCAACAGCCGAAGACGCA+GGG | - | chr2.4:17995002-17995021 | None:intergenic | 55.0% | |
| GAGTGGAGTGAAGAGGCCAA+TGG | - | chr2.4:17994914-17994933 | None:intergenic | 55.0% | |
| GCGATCACAACTTTGTCCGC+AGG | + | chr2.4:17995138-17995157 | MS.gene065181:CDS | 55.0% | |
| TAGCCCACCCAAATTGGCAC+CGG | - | chr2.4:17994639-17994658 | None:intergenic | 55.0% | |
| TGAATGTGGTGACCCACCAG+AGG | + | chr2.4:17995179-17995198 | MS.gene065181:CDS | 55.0% | |
| TTCAACAGCCGAAGACGCAG+GGG | - | chr2.4:17995001-17995020 | None:intergenic | 55.0% | |
| TTTGTCCGCAGGGGACTTGA+TGG | + | chr2.4:17995149-17995168 | MS.gene065181:CDS | 55.0% | |
| ! | TCTCCGGTGCCAATTTGGGT+GGG | + | chr2.4:17994633-17994652 | MS.gene065181:intron | 55.0% |
| !! | GGTGGTATTGGCTTGGGTCT+TGG | + | chr2.4:17994575-17994594 | MS.gene065181:intron | 55.0% |
| CTCCTCGTCAGAGGAAGACG+AGG | - | chr2.4:17995304-17995323 | None:intergenic | 60.0% | |
| GCGTGCTTTCCTGACCTCGT+CGG | - | chr2.4:17995330-17995349 | None:intergenic | 60.0% | |
| GCTTCAACAGCCGAAGACGC+AGG | - | chr2.4:17995003-17995022 | None:intergenic | 60.0% | |
| GTAGGCCATCAAGTCCCCTG+CGG | - | chr2.4:17995157-17995176 | None:intergenic | 60.0% | |
| TCGAACCTGAGACCTTGCGG+AGG | - | chr2.4:17994610-17994629 | None:intergenic | 60.0% | |
| ! | AACGTTGGCTACCGTTGCCG+AGG | + | chr2.4:17994229-17994248 | MS.gene065181:CDS | 60.0% |
| ! | CGAGGTCAGGAAAGCACGCA+AGG | + | chr2.4:17995331-17995350 | MS.gene065181:CDS | 60.0% |
| ! | CTCTCCGGTGCCAATTTGGG+TGG | + | chr2.4:17994632-17994651 | MS.gene065181:intron | 60.0% |
| CGTCGGACTCTCCTCGTCAG+AGG | - | chr2.4:17995313-17995332 | None:intergenic | 65.0% | |
| CTGACGAGGAGAGTCCGACG+AGG | + | chr2.4:17995313-17995332 | MS.gene065181:CDS | 65.0% | |
| GAGGAGAGTCCGACGAGGTC+AGG | + | chr2.4:17995318-17995337 | MS.gene065181:CDS | 65.0% | |
| GGCCTCGTCTTCCTCTGACG+AGG | + | chr2.4:17995299-17995318 | MS.gene065181:CDS | 65.0% | |
| GTGCTCCTCCGCAAGGTCTC+AGG | + | chr2.4:17994602-17994621 | MS.gene065181:intron | 65.0% | |
| ! | TGGGAGTGTGCTCCTCCGCA+AGG | + | chr2.4:17994595-17994614 | MS.gene065181:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 17994158 | 17995557 | 17994158 | ID=MS.gene065181 |
| chr2.4 | mRNA | 17994158 | 17995557 | 17994158 | ID=MS.gene065181.t1;Parent=MS.gene065181 |
| chr2.4 | exon | 17994158 | 17994480 | 17994158 | ID=MS.gene065181.t1.exon1;Parent=MS.gene065181.t1 |
| chr2.4 | CDS | 17994158 | 17994480 | 17994158 | ID=cds.MS.gene065181.t1;Parent=MS.gene065181.t1 |
| chr2.4 | exon | 17994726 | 17995557 | 17994726 | ID=MS.gene065181.t1.exon2;Parent=MS.gene065181.t1 |
| chr2.4 | CDS | 17994726 | 17995557 | 17994726 | ID=cds.MS.gene065181.t1;Parent=MS.gene065181.t1 |
| Gene Sequence |
| Protein sequence |
