Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065382.t1 | XP_003624490.2 | 96.8 | 557 | 18 | 0 | 1 | 557 | 1 | 557 | 1.80E-297 | 1031.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065382.t1 | Q9LYU8 | 79.6 | 486 | 98 | 1 | 72 | 556 | 80 | 565 | 5.1e-208 | 725.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065382.t1 | G7KX84 | 96.8 | 557 | 18 | 0 | 1 | 557 | 1 | 557 | 1.3e-297 | 1031.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050629 | MS.gene065382 | -0.806932 | 6.47E-50 | -1.69E-46 |
| MS.gene052115 | MS.gene065382 | 0.81332 | 2.72E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065382.t1 | MTR_7g083920 | 98.205 | 557 | 10 | 0 | 1 | 557 | 1 | 557 | 0.0 | 1122 |
| MS.gene065382.t1 | MTR_7g083920 | 98.144 | 431 | 8 | 0 | 127 | 557 | 20 | 450 | 0.0 | 866 |
| MS.gene065382.t1 | MTR_6g033260 | 81.139 | 509 | 89 | 2 | 51 | 553 | 47 | 554 | 0.0 | 825 |
| MS.gene065382.t1 | MTR_6g033260 | 80.822 | 511 | 89 | 3 | 51 | 553 | 47 | 556 | 0.0 | 820 |
| MS.gene065382.t1 | MTR_6g033260 | 83.120 | 468 | 73 | 1 | 51 | 512 | 47 | 514 | 0.0 | 786 |
| MS.gene065382.t1 | MTR_3g084500 | 28.216 | 482 | 300 | 12 | 81 | 534 | 79 | 542 | 7.59e-50 | 185 |
| MS.gene065382.t1 | MTR_8g083210 | 25.142 | 529 | 373 | 11 | 21 | 534 | 32 | 552 | 2.34e-48 | 181 |
| MS.gene065382.t1 | MTR_8g083210 | 26.501 | 483 | 330 | 12 | 71 | 534 | 69 | 545 | 5.40e-48 | 179 |
| MS.gene065382.t1 | MTR_3g084500 | 28.297 | 364 | 226 | 9 | 192 | 534 | 23 | 372 | 9.54e-38 | 148 |
| MS.gene065382.t1 | MTR_3g084500 | 28.882 | 322 | 197 | 8 | 234 | 534 | 12 | 322 | 2.24e-34 | 138 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065382.t1 | AT5G13280 | 81.070 | 486 | 91 | 1 | 72 | 556 | 80 | 565 | 0.0 | 789 |
| MS.gene065382.t1 | AT5G14060 | 80.388 | 464 | 89 | 1 | 74 | 535 | 78 | 541 | 0.0 | 754 |
| MS.gene065382.t1 | AT5G14060 | 80.388 | 464 | 89 | 1 | 74 | 535 | 78 | 541 | 0.0 | 754 |
| MS.gene065382.t1 | AT3G02020 | 74.950 | 499 | 118 | 2 | 46 | 541 | 55 | 549 | 0.0 | 754 |
| MS.gene065382.t1 | AT5G14060 | 81.167 | 377 | 71 | 0 | 74 | 450 | 78 | 454 | 0.0 | 632 |
| MS.gene065382.t1 | AT4G19710 | 27.140 | 479 | 307 | 11 | 81 | 534 | 91 | 552 | 7.94e-49 | 182 |
| MS.gene065382.t1 | AT4G19710 | 27.140 | 479 | 307 | 11 | 81 | 534 | 91 | 552 | 1.62e-48 | 181 |
| MS.gene065382.t1 | AT1G31230 | 27.801 | 482 | 300 | 12 | 81 | 534 | 86 | 547 | 1.79e-48 | 181 |
Find 117 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATGCGAGGGAAAGTGATTT+TGG | 0.193404 | 7.1:-21169783 | MS.gene065382:CDS |
| GCTGCATATCTTAATAAAAT+AGG | 0.208899 | 7.1:-21167745 | MS.gene065382:CDS |
| TACAGTGTTGTTATGAAATT+TGG | 0.211688 | 7.1:-21169729 | MS.gene065382:CDS |
| TTTGCTTGTGGGCATATATT+TGG | 0.219591 | 7.1:+21165316 | None:intergenic |
| TTGCAGGCCTTTCAAGTTCT+TGG | 0.229855 | 7.1:-21163707 | MS.gene065382:intron |
| CTTGCTCATGTCTCTTGTTT+TGG | 0.231285 | 7.1:+21164983 | None:intergenic |
| CTTCACAAATGCGGACATTT+TGG | 0.242277 | 7.1:-21167532 | MS.gene065382:CDS |
| CCTGCAATTCCAATTGTTAC+AGG | 0.246978 | 7.1:-21167456 | MS.gene065382:CDS |
| GTTTCCAATAAGAGAGATTA+TGG | 0.267691 | 7.1:+21164068 | None:intergenic |
| ATAAGGGTACCCGAAGCTTT+AGG | 0.282438 | 7.1:+21165008 | None:intergenic |
| AGATCCATAATCTCTCTTAT+TGG | 0.284492 | 7.1:-21164072 | MS.gene065382:CDS |
| CAAGATTACTTGGTTTCATT+TGG | 0.286947 | 7.1:-21167793 | MS.gene065382:CDS |
| ATCAGAACATCTAGAAGAAT+TGG | 0.321161 | 7.1:-21167866 | MS.gene065382:intron |
| AATGAATCCATACCTGAAAA+TGG | 0.329910 | 7.1:-21162162 | MS.gene065382:CDS |
| GATTTCTCAGGGTGCATCTA+AGG | 0.330625 | 7.1:-21163660 | MS.gene065382:intron |
| ACTAGGACTGCGAGAGATTC+AGG | 0.335705 | 7.1:-21167216 | MS.gene065382:intron |
| TTTAGGCATATCAATTGATA+TGG | 0.338260 | 7.1:-21164679 | MS.gene065382:CDS |
| TATCATTGTTCTTTCTGCTA+TGG | 0.342008 | 7.1:-21169631 | MS.gene065382:CDS |
| CCTGTAACAATTGGAATTGC+AGG | 0.347455 | 7.1:+21167456 | None:intergenic |
| GAGAAGTTGATATTCCTGTT+AGG | 0.349283 | 7.1:-21165049 | MS.gene065382:CDS |
| CGAAGAGGTTACATAGTGAT+TGG | 0.349771 | 7.1:-21167488 | MS.gene065382:CDS |
| TAAGGGTACCCGAAGCTTTA+GGG | 0.355181 | 7.1:+21165009 | None:intergenic |
| TCAGATGTCGTCACTGATAC+TGG | 0.365559 | 7.1:-21164043 | MS.gene065382:CDS |
| TTTCAAGTTCTTGGATCCCT+TGG | 0.372283 | 7.1:-21163698 | MS.gene065382:CDS |
| CCCGCATGCTTGGTGCGGTT+GGG | 0.373066 | 7.1:-21164814 | MS.gene065382:CDS |
| TTCCTACAACCCTAAAGCTT+CGG | 0.373093 | 7.1:-21165018 | MS.gene065382:CDS |
| CCAAGGAAGCCTGTAACAAT+TGG | 0.375737 | 7.1:+21167447 | None:intergenic |
| GATTTGACAGCTACAACAAT+TGG | 0.381611 | 7.1:-21167245 | MS.gene065382:CDS |
| CCAATTGTTACAGGCTTCCT+TGG | 0.388858 | 7.1:-21167447 | MS.gene065382:CDS |
| ATCATTGTTCTTTCTGCTAT+GGG | 0.389637 | 7.1:-21169630 | MS.gene065382:CDS |
| CAATGTTCAAATGATTTCTC+AGG | 0.391517 | 7.1:-21163672 | MS.gene065382:CDS |
| TGACTATGTTGTTGAAGAAC+TGG | 0.392763 | 7.1:-21164127 | MS.gene065382:CDS |
| TCCACGGACTCAAGATTACT+TGG | 0.393753 | 7.1:-21167803 | MS.gene065382:CDS |
| ACCCGCATGCTTGGTGCGGT+TGG | 0.395178 | 7.1:-21164815 | MS.gene065382:CDS |
| ACAATGATAGGCCTCTCTTC+AGG | 0.405492 | 7.1:+21169645 | None:intergenic |
| CTTTGTTACCGTGTCGAATC+GGG | 0.405814 | 7.1:-21169884 | MS.gene065382:CDS |
| TCTTTGTTACCGTGTCGAAT+CGG | 0.407129 | 7.1:-21169885 | MS.gene065382:CDS |
| TCCTACAACCCTAAAGCTTC+GGG | 0.420383 | 7.1:-21165017 | MS.gene065382:CDS |
| TCTTAATAAAATAGGTGTTA+AGG | 0.422364 | 7.1:-21167737 | MS.gene065382:CDS |
| AGAAGTTGATATTCCTGTTA+GGG | 0.422980 | 7.1:-21165048 | MS.gene065382:CDS |
| TCTGTTCGTACATTATCTTA+AGG | 0.426617 | 7.1:-21162138 | None:intergenic |
| ATATAAAAGACTTGCATCTC+AGG | 0.437550 | 7.1:-21168603 | MS.gene065382:intron |
| CAGTATGATGCATTCGAGAT+TGG | 0.438747 | 7.1:-21167573 | MS.gene065382:CDS |
| CTCTTTCATCCTCACAGCAT+TGG | 0.439923 | 7.1:+21169692 | None:intergenic |
| AAATACCAGTAAAAGTTTGT+TGG | 0.449301 | 7.1:+21169599 | None:intergenic |
| ATAGCAGAAAGAACAATGAT+AGG | 0.458776 | 7.1:+21169633 | None:intergenic |
| TCAAATGTCAAATACGGAAC+AGG | 0.467011 | 7.1:+21165292 | None:intergenic |
| TGGGCATATATTTGGATCAC+AGG | 0.467793 | 7.1:+21165324 | None:intergenic |
| TGCGGTTGGGTTCCTTGCTA+AGG | 0.471236 | 7.1:-21164801 | MS.gene065382:intron |
| TTCAGGACAGTGGAGGAACT+TGG | 0.473654 | 7.1:-21168463 | MS.gene065382:intron |
| TGTAACCTCTTCGCAACAGC+TGG | 0.480027 | 7.1:+21167498 | None:intergenic |
| AGCACCGAAGTATGCAAGTT+CGG | 0.480996 | 7.1:+21165261 | None:intergenic |
| ACCCGAAGCTTTAGGGTTGT+AGG | 0.482694 | 7.1:+21165016 | None:intergenic |
| GAAGAGGTTACATAGTGATT+GGG | 0.482865 | 7.1:-21167487 | MS.gene065382:CDS |
| GCCTCGTCAAATGTCAAATA+CGG | 0.487587 | 7.1:+21165286 | None:intergenic |
| CACTCGACACTTTCTTCACA+AGG | 0.494686 | 7.1:+21169835 | None:intergenic |
| ATTGTAAGCACCCGCATGCT+TGG | 0.497902 | 7.1:-21164824 | MS.gene065382:CDS |
| ATTTGACAGCTACAACAATT+GGG | 0.500909 | 7.1:-21167244 | MS.gene065382:CDS |
| CAAGGACAACATTGGGTAGA+GGG | 0.503097 | 7.1:-21167274 | MS.gene065382:CDS |
| ACTTGCATACTTCGGTGCTC+AGG | 0.503358 | 7.1:-21165257 | MS.gene065382:intron |
| GTCTCATAGACTGTGGATGC+AGG | 0.505639 | 7.1:+21165078 | None:intergenic |
| TCATGTGCAAGGACAACATT+GGG | 0.510884 | 7.1:-21167281 | MS.gene065382:CDS |
| ACGAAGCAGAGCAGTCTGTC+AGG | 0.511744 | 7.1:-21162233 | MS.gene065382:CDS |
| CACAAAATCTTCTTTGAGTG+TGG | 0.514746 | 7.1:-21162204 | MS.gene065382:CDS |
| TAGCTCTCTGCTCCACAGCT+TGG | 0.525311 | 7.1:+21164614 | None:intergenic |
| ACAATCATGGCAACGCAAGT+TGG | 0.536528 | 7.1:-21169966 | None:intergenic |
| AGAATTGGAGCAACTTCTGA+AGG | 0.538970 | 7.1:-21167851 | MS.gene065382:CDS |
| GGAATATCAACTTCTCGAGC+AGG | 0.541819 | 7.1:+21165056 | None:intergenic |
| CTCGACACTTTCTTCACAAG+GGG | 0.544534 | 7.1:+21169837 | None:intergenic |
| CAGGTATGGAAAGATGTTGA+TGG | 0.545348 | 7.1:-21165355 | MS.gene065382:CDS |
| GGTTAGTATTTCCTTGACGT+TGG | 0.549960 | 7.1:-21164643 | MS.gene065382:CDS |
| AGTGTTGTTATGAAATTTGG+TGG | 0.553672 | 7.1:-21169726 | MS.gene065382:CDS |
| CTTTCTTCACAAGGGGAACG+TGG | 0.553771 | 7.1:+21169844 | None:intergenic |
| TGTTACAGGCTTCCTTGGAA+AGG | 0.555752 | 7.1:-21167442 | MS.gene065382:intron |
| CCCAACCGCACCAAGCATGC+GGG | 0.559440 | 7.1:+21164814 | None:intergenic |
| TTGCTTTGTATTCAGGACAG+TGG | 0.559449 | 7.1:-21168473 | MS.gene065382:intron |
| GCAAGGACAACATTGGGTAG+AGG | 0.560908 | 7.1:-21167275 | MS.gene065382:CDS |
| TTGGAGAGTGCATGTCCACT+AGG | 0.565887 | 7.1:-21167774 | MS.gene065382:CDS |
| CGTTGGATCCGTCCAAGCTG+TGG | 0.567000 | 7.1:-21164626 | MS.gene065382:CDS |
| ACAACAATTGGGAAAGCACT+AGG | 0.567209 | 7.1:-21167233 | MS.gene065382:CDS |
| GTTGTTGCAGCAACAATGCG+AGG | 0.567594 | 7.1:-21169797 | MS.gene065382:CDS |
| ACCCAACCGCACCAAGCATG+CGG | 0.572715 | 7.1:+21164813 | None:intergenic |
| AATGTTCAAATGATTTCTCA+GGG | 0.575084 | 7.1:-21163671 | MS.gene065382:CDS |
| AAGGGATCCAAGAACTTGAA+AGG | 0.580115 | 7.1:+21163700 | None:intergenic |
| TCTCTGCTCCACAGCTTGGA+CGG | 0.582859 | 7.1:+21164618 | None:intergenic |
| GCCGCCGAACTTGCATACTT+CGG | 0.588568 | 7.1:-21165265 | MS.gene065382:CDS |
| ACCAAGTAATCTTGAGTCCG+TGG | 0.593123 | 7.1:+21167802 | None:intergenic |
| ACTGAGCTCGTCGATACTAT+CGG | 0.597616 | 7.1:+21168627 | None:intergenic |
| AATTGGAGCAACTTCTGAAG+GGG | 0.602670 | 7.1:-21167849 | MS.gene065382:CDS |
| CATATCCAGCTGTTGCGAAG+AGG | 0.603370 | 7.1:-21167503 | MS.gene065382:CDS |
| ATCATGTGCAAGGACAACAT+TGG | 0.605197 | 7.1:-21167282 | MS.gene065382:CDS |
| GAATTGGAGCAACTTCTGAA+GGG | 0.606271 | 7.1:-21167850 | MS.gene065382:CDS |
| CTTTGTATTCAGGACAGTGG+AGG | 0.607780 | 7.1:-21168470 | MS.gene065382:intron |
| AAGGACAACATTGGGTAGAG+GGG | 0.613013 | 7.1:-21167273 | MS.gene065382:CDS |
| GTCGTCACTGATACTGGAGA+AGG | 0.617116 | 7.1:-21164037 | MS.gene065382:intron |
| GTGTTGTTATGAAATTTGGT+GGG | 0.620539 | 7.1:-21169725 | MS.gene065382:CDS |
| CTTCTGTTGCCAATGCTGTG+AGG | 0.626415 | 7.1:-21169701 | MS.gene065382:CDS |
| GAAACGTAATGTTACCACGT+TGG | 0.628216 | 7.1:-21164849 | MS.gene065382:CDS |
| TTTCTTCACAAGGGGAACGT+GGG | 0.633560 | 7.1:+21169845 | None:intergenic |
| AACTGATGACTTCACAAATG+CGG | 0.637078 | 7.1:-21167541 | MS.gene065382:CDS |
| TCCGTATTTGACATTTGACG+AGG | 0.644289 | 7.1:-21165287 | MS.gene065382:CDS |
| AGGCTCGGAAATCATGTGCA+AGG | 0.645724 | 7.1:-21167292 | MS.gene065382:CDS |
| AAGCACCCGCATGCTTGGTG+CGG | 0.646180 | 7.1:-21164819 | MS.gene065382:CDS |
| AGGACAACATTGGGTAGAGG+GGG | 0.646851 | 7.1:-21167272 | MS.gene065382:CDS |
| ACTCGACACTTTCTTCACAA+GGG | 0.646854 | 7.1:+21169836 | None:intergenic |
| CGAGCAGGTCTCATAGACTG+TGG | 0.649718 | 7.1:+21165071 | None:intergenic |
| TCATTTGAACATTGACACCA+AGG | 0.650137 | 7.1:+21163681 | None:intergenic |
| TGATGAAAGAACTGACTCCA+CGG | 0.656783 | 7.1:-21167819 | MS.gene065382:CDS |
| CATTTGAACATTGACACCAA+GGG | 0.662883 | 7.1:+21163682 | None:intergenic |
| TTGTTGCAGCAACAATGCGA+GGG | 0.676152 | 7.1:-21169796 | MS.gene065382:CDS |
| GCTGTGTACCCGATTCGACA+CGG | 0.676916 | 7.1:+21169876 | None:intergenic |
| ATATGCAGCAAAGATCCTAG+TGG | 0.678193 | 7.1:+21167759 | None:intergenic |
| CTTGGACGGATCCAACGTCA+AGG | 0.680723 | 7.1:+21164632 | None:intergenic |
| ACCGAAGTATGCAAGTTCGG+CGG | 0.683245 | 7.1:+21165264 | None:intergenic |
| CAAAACAAGAGACATGAGCA+AGG | 0.697597 | 7.1:-21164982 | MS.gene065382:intron |
| TGATATGGTAGCTACAAGTG+AGG | 0.705689 | 7.1:-21164664 | MS.gene065382:CDS |
| GGTGCTTACAATATCCAACG+TGG | 0.806316 | 7.1:+21164835 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 21162140 | 21169982 | 21162140 | ID=MS.gene065382 |
| chr7.1 | mRNA | 21162140 | 21169982 | 21162140 | ID=MS.gene065382.t1;Parent=MS.gene065382 |
| chr7.1 | exon | 21169605 | 21169982 | 21169605 | ID=MS.gene065382.t1.exon1;Parent=MS.gene065382.t1 |
| chr7.1 | CDS | 21169605 | 21169982 | 21169605 | ID=cds.MS.gene065382.t1;Parent=MS.gene065382.t1 |
| chr7.1 | exon | 21168604 | 21168686 | 21168604 | ID=MS.gene065382.t1.exon2;Parent=MS.gene065382.t1 |
| chr7.1 | CDS | 21168604 | 21168686 | 21168604 | ID=cds.MS.gene065382.t1;Parent=MS.gene065382.t1 |
| chr7.1 | exon | 21168440 | 21168480 | 21168440 | ID=MS.gene065382.t1.exon3;Parent=MS.gene065382.t1 |
| chr7.1 | CDS | 21168440 | 21168480 | 21168440 | ID=cds.MS.gene065382.t1;Parent=MS.gene065382.t1 |
| chr7.1 | exon | 21167729 | 21167883 | 21167729 | ID=MS.gene065382.t1.exon4;Parent=MS.gene065382.t1 |
| chr7.1 | CDS | 21167729 | 21167883 | 21167729 | ID=cds.MS.gene065382.t1;Parent=MS.gene065382.t1 |
| chr7.1 | exon | 21167443 | 21167592 | 21167443 | ID=MS.gene065382.t1.exon5;Parent=MS.gene065382.t1 |
| chr7.1 | CDS | 21167443 | 21167592 | 21167443 | ID=cds.MS.gene065382.t1;Parent=MS.gene065382.t1 |
| chr7.1 | exon | 21167217 | 21167312 | 21167217 | ID=MS.gene065382.t1.exon6;Parent=MS.gene065382.t1 |
| chr7.1 | CDS | 21167217 | 21167312 | 21167217 | ID=cds.MS.gene065382.t1;Parent=MS.gene065382.t1 |
| chr7.1 | exon | 21165258 | 21165374 | 21165258 | ID=MS.gene065382.t1.exon7;Parent=MS.gene065382.t1 |
| chr7.1 | CDS | 21165258 | 21165374 | 21165258 | ID=cds.MS.gene065382.t1;Parent=MS.gene065382.t1 |
| chr7.1 | exon | 21164983 | 21165102 | 21164983 | ID=MS.gene065382.t1.exon8;Parent=MS.gene065382.t1 |
| chr7.1 | CDS | 21164983 | 21165102 | 21164983 | ID=cds.MS.gene065382.t1;Parent=MS.gene065382.t1 |
| chr7.1 | exon | 21164802 | 21164894 | 21164802 | ID=MS.gene065382.t1.exon9;Parent=MS.gene065382.t1 |
| chr7.1 | CDS | 21164802 | 21164894 | 21164802 | ID=cds.MS.gene065382.t1;Parent=MS.gene065382.t1 |
| chr7.1 | exon | 21164605 | 21164721 | 21164605 | ID=MS.gene065382.t1.exon10;Parent=MS.gene065382.t1 |
| chr7.1 | CDS | 21164605 | 21164721 | 21164605 | ID=cds.MS.gene065382.t1;Parent=MS.gene065382.t1 |
| chr7.1 | exon | 21164038 | 21164154 | 21164038 | ID=MS.gene065382.t1.exon11;Parent=MS.gene065382.t1 |
| chr7.1 | CDS | 21164038 | 21164154 | 21164038 | ID=cds.MS.gene065382.t1;Parent=MS.gene065382.t1 |
| chr7.1 | exon | 21163661 | 21163723 | 21163661 | ID=MS.gene065382.t1.exon12;Parent=MS.gene065382.t1 |
| chr7.1 | CDS | 21163661 | 21163723 | 21163661 | ID=cds.MS.gene065382.t1;Parent=MS.gene065382.t1 |
| chr7.1 | exon | 21162140 | 21162283 | 21162140 | ID=MS.gene065382.t1.exon13;Parent=MS.gene065382.t1 |
| chr7.1 | CDS | 21162140 | 21162283 | 21162140 | ID=cds.MS.gene065382.t1;Parent=MS.gene065382.t1 |
| Gene Sequence |
| Protein sequence |