AlfalfaGEDB | MS.gene052115

M. sativa cultivar XinJiangDaYe / MS.gene052115

KEGG: -
GO: -
PFAM: PF02466.22

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene052115.t1	XP_013465402.1	97.9	146	3	0	1	146	1	146	1.50E-73	285.4

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene052115.t1	Q41050	87.0	146	19	0	1	146	1	146	2.3e-67	256.1

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene052115.t1	I3SSC7	97.9	146	3	0	1	146	1	146	1.1e-73	285.4

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049758	MS.gene052115	0.810961	8.88E-51	-1.69E-46
MS.gene050763	MS.gene052115	0.800994	1.11E-48	-1.69E-46
MS.gene052115	MS.gene058182	0.836531	8.86E-57	-1.69E-46
MS.gene052115	MS.gene060084	0.81756	3.09E-52	-1.69E-46
MS.gene052115	MS.gene064863	0.822828	1.92E-53	-1.69E-46
MS.gene052115	MS.gene065382	0.81332	2.72E-51	-1.69E-46
MS.gene052115	MS.gene065408	0.81398	1.95E-51	-1.69E-46
MS.gene052115	MS.gene066716	0.815679	8.17E-52	-1.69E-46
MS.gene052115	MS.gene067029	0.828111	1.08E-54	-1.69E-46
MS.gene052115	MS.gene070176	0.803165	3.97E-49	-1.69E-46
MS.gene052115	MS.gene072564	0.808081	3.69E-50	-1.69E-46
MS.gene052115	MS.gene072565	0.81136	7.28E-51	-1.69E-46
MS.gene052115	MS.gene073340	-0.813193	2.90E-51	-1.69E-46
MS.gene052115	MS.gene07352	-0.832977	6.95E-56	-1.69E-46
MS.gene052115	MS.gene21434	-0.840001	1.13E-57	-1.69E-46
MS.gene052115	MS.gene30964	0.859837	3.14E-63	-1.69E-46
MS.gene052115	MS.gene31148	0.83316	6.26E-56	-1.69E-46
MS.gene052115	MS.gene40106	0.808703	2.72E-50	-1.69E-46
MS.gene052115	MS.gene44007	0.813918	2.01E-51	-1.69E-46
MS.gene052115	MS.gene45498	0.858413	8.38E-63	-1.69E-46
MS.gene052115	MS.gene52386	0.802718	4.91E-49	-1.69E-46
MS.gene052115	MS.gene70819	0.846885	1.64E-59	-1.69E-46
MS.gene052115	MS.gene82624	0.803828	2.89E-49	-1.69E-46
MS.gene052115	MS.gene85898	0.820813	5.62E-53	-1.69E-46
MS.gene052115	MS.gene96284	0.80262	5.15E-49	-1.69E-46
MS.gene052115	MS.gene96331	-0.800712	1.27E-48	-1.69E-46

PPI:

Gene1	Gene2	Type
MS.gene069932	MS.gene052115	PPI
MS.gene028992	MS.gene052115	PPI
MS.gene052115	MS.gene064203	PPI
MS.gene35738	MS.gene052115	PPI
MS.gene052115	MS.gene043354	PPI
MS.gene45331	MS.gene052115	PPI
MS.gene31538	MS.gene052115	PPI
MS.gene046061	MS.gene052115	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene052115.t1	MTR_2g096920	97.945	146	3	0	1	146	1	146	5.84e-103	291
MS.gene052115.t1	MTR_2g096920	95.192	104	5	0	1	104	1	104	3.38e-70	207
MS.gene052115.t1	MTR_2g096900	86.014	143	20	0	1	143	1	143	6.12e-69	205
MS.gene052115.t1	MTR_4g121900	32.680	153	74	3	18	142	24	175	3.52e-20	82.0
MS.gene052115.t1	MTR_2g034550	30.065	153	79	3	18	142	26	178	7.65e-17	73.6

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene052115.t1	AT2G28900	61.111	144	56	0	1	144	1	144	3.44e-65	195
MS.gene052115.t1	AT4G16160	28.758	153	82	3	18	143	21	173	3.31e-17	74.3
MS.gene052115.t1	AT4G16160	28.387	155	82	3	18	143	21	175	6.87e-17	73.6

Find 46 sgRNAs with CRISPR-Local

Find 128 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TTCCTTAATCTAGCTGTTGA+TGG	0.254458	2.3:+5790246	MS.gene052115:CDS
ATGCCTTGGAGCAGAATTTC+CGG	0.262488	2.3:+5790174	MS.gene052115:CDS
AACCATCAACAGCTAGATTA+AGG	0.310083	2.3:-5790248	None:intergenic
GTTGATGGTTTCTTGAAGAT+TGG	0.371740	2.3:+5790261	MS.gene052115:CDS
TGTGCAAGGAAGGTGCATAC+TGG	0.379148	2.3:+5791479	MS.gene052115:CDS
ATGATCGGAGGTGCGGTGAC+AGG	0.380411	2.3:+5791990	MS.gene052115:CDS
ATTGCAGTAGATGCCATTAC+AGG	0.382089	2.3:+5792053	MS.gene052115:CDS
GGATCCGTGGCACCAGAGAC+TGG	0.423846	2.3:+5791638	MS.gene052115:CDS
TCTACGCTCACAGGAGCTAT+AGG	0.430170	2.3:+5791580	MS.gene052115:intron
TGCCTTGGAGCAGAATTTCC+GGG	0.441939	2.3:+5790175	MS.gene052115:CDS
GTATATGTTGGAACAGAATA+CGG	0.442517	2.3:+5791607	MS.gene052115:CDS
CGGGTCAGTGTCTTCTCCAC+AGG	0.444117	2.3:+5790194	MS.gene052115:CDS
GTCTTCTCCACAGGTGGATG+TGG	0.456927	2.3:+5790203	MS.gene052115:CDS
TGATCGGAGGTGCGGTGACA+GGG	0.467838	2.3:+5791991	MS.gene052115:CDS
TGTCACCGCACCTCCGATCA+TGG	0.470776	2.3:-5791988	None:intergenic
GTGCAAGGAAGGTGCATACT+GGG	0.476518	2.3:+5791480	MS.gene052115:CDS
TTCAGTTCATTCAGGTAAAG+TGG	0.477368	2.3:-5792109	None:intergenic
TGAGAGAATTACCCAGTCTC+TGG	0.488901	2.3:-5791650	None:intergenic
GGCAATTGCAGCCCCTGTAA+TGG	0.494547	2.3:-5792066	None:intergenic
CTGAAGAAGATGTGCAAGGA+AGG	0.520056	2.3:+5791469	MS.gene052115:CDS
GCTATAGGTGGCGTATATGT+TGG	0.523978	2.3:+5791595	MS.gene052115:CDS
TATATGTTGGAACAGAATAC+GGG	0.532988	2.3:+5791608	MS.gene052115:CDS
GTCAGTGTCTTCTCCACAGG+TGG	0.548058	2.3:+5790197	MS.gene052115:CDS
TTGCAGTAGATGCCATTACA+GGG	0.565602	2.3:+5792054	MS.gene052115:CDS
CTGCAGAAGAATGCCATGAT+CGG	0.581201	2.3:+5791975	MS.gene052115:intron
GATCGGAGGTGCGGTGACAG+GGG	0.583014	2.3:+5791992	MS.gene052115:CDS
ACTCTTTCTGACAATATGAA+AGG	0.589407	2.3:-5790401	None:intergenic
GTTTATGAATTCTGCAGCAG+TGG	0.590673	2.3:-5792087	None:intergenic
TTACCCAGTCTCTGGTGCCA+CGG	0.593471	2.3:-5791642	None:intergenic
GATCCGTGGCACCAGAGACT+GGG	0.594640	2.3:+5791639	MS.gene052115:CDS
AGCTACAAGGGCACTTGCAG+AGG	0.594831	2.3:+5790375	MS.gene052115:CDS
GGTGGATGTGGTTATAGACA+TGG	0.611761	2.3:+5790215	MS.gene052115:CDS
GAACAGAATACGGGGTAGAG+AGG	0.617900	2.3:+5791617	MS.gene052115:CDS
CTGTGGAGAAGACACTGACC+CGG	0.631326	2.3:-5790193	None:intergenic
GACCCGGAAATTCTGCTCCA+AGG	0.633432	2.3:-5790177	None:intergenic
GAATGCCATGATCGGAGGTG+CGG	0.635353	2.3:+5791983	MS.gene052115:CDS
CAGAAGAATGCCATGATCGG+AGG	0.646513	2.3:+5791978	MS.gene052115:intron
TCAACAGCTAGATTAAGGAA+AGG	0.647866	2.3:-5790243	None:intergenic
GTGGATGTGGTTATAGACAT+GGG	0.649742	2.3:+5790216	MS.gene052115:CDS
TCTATAACCACATCCACCTG+TGG	0.679735	2.3:-5790210	None:intergenic
TACGGGGTAGAGAGGATCCG+TGG	0.679908	2.3:+5791625	MS.gene052115:CDS
TGCAAGGAAGGTGCATACTG+GGG	0.686067	2.3:+5791481	MS.gene052115:CDS
ACGCTCACAGGAGCTATAGG+TGG	0.692992	2.3:+5791583	MS.gene052115:intron
TGCAGTAGATGCCATTACAG+GGG	0.693597	2.3:+5792055	MS.gene052115:CDS
GCAGCTGAAGAAGATGTGCA+AGG	0.725846	2.3:+5791465	MS.gene052115:intron
ATATGTTGGAACAGAATACG+GGG	0.766118	2.3:+5791609	MS.gene052115:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	ATTGAAATTCATTAATTAAA+GGG	-	chr2.3:5791182-5791201	None:intergenic	10.0%
!!	GATTGAAATTCATTAATTAA+AGG	-	chr2.3:5791183-5791202	None:intergenic	15.0%
!!!	TTTTGACAATTTTAACAAAA+GGG	-	chr2.3:5790452-5790471	None:intergenic	15.0%
!!	AAAGATGAAAAATTTGATTC+TGG	+	chr2.3:5790469-5790488	MS.gene052115:intron	20.0%
!!	ACAATACTTCAAAAAGAAAA+AGG	-	chr2.3:5790565-5790584	None:intergenic	20.0%
!!	CAATTAGAAATGTATAAAAC+TGG	-	chr2.3:5790761-5790780	None:intergenic	20.0%
!!	GAAATTTAACACATTGATAT+TGG	-	chr2.3:5790535-5790554	None:intergenic	20.0%
!!	TAATAACACAAATCTAAACA+AGG	-	chr2.3:5790508-5790527	None:intergenic	20.0%
!!!	ATTTAACATTGTTGTTATCA+TGG	+	chr2.3:5790686-5790705	MS.gene052115:intron	20.0%
!!!	CTTTTGACAATTTTAACAAA+AGG	-	chr2.3:5790453-5790472	None:intergenic	20.0%
!!!	TAGAGAAAACACTTTATTTT+TGG	+	chr2.3:5791737-5791756	MS.gene052115:intron	20.0%
!	AAGATTATCTCTCATTAACA+AGG	-	chr2.3:5791442-5791461	None:intergenic	25.0%
!	ATTTCTGTTTCGTAAATTTG+AGG	+	chr2.3:5791333-5791352	MS.gene052115:intron	25.0%
!	GAAATGAATTTGTAAAAGCT+GGG	+	chr2.3:5791828-5791847	MS.gene052115:intron	25.0%
!	GAGAATCTAAATTCTCAAAA+GGG	+	chr2.3:5791091-5791110	MS.gene052115:intron	25.0%
!	TAGATAAGCTATGATGAAAA+AGG	-	chr2.3:5790820-5790839	None:intergenic	25.0%
!	TGAGAATCTAAATTCTCAAA+AGG	+	chr2.3:5791090-5791109	MS.gene052115:intron	25.0%
!	TGTGAGTAAAATAAGCATTT+CGG	+	chr2.3:5791124-5791143	MS.gene052115:intron	25.0%
!	TTATTAACAAGCATCATGTT+TGG	+	chr2.3:5791806-5791825	MS.gene052115:intron	25.0%
!	TTGTGTTGCATTATGTAATA+TGG	+	chr2.3:5791510-5791529	MS.gene052115:intron	25.0%
!	TTTCTGTTTCGTAAATTTGA+GGG	+	chr2.3:5791334-5791353	MS.gene052115:intron	25.0%
!!	AAATATCAGCATAGATTTTC+AGG	-	chr2.3:5790738-5790757	None:intergenic	25.0%
!!	ATTGTGAGTATTTTACAGAT+TGG	+	chr2.3:5790777-5790796	MS.gene052115:intron	25.0%
!!!	ACATATAACCTTTGAAATTG+TGG	+	chr2.3:5791277-5791296	MS.gene052115:intron	25.0%
!!!	TTATCATGGTTGATTCTTTT+GGG	+	chr2.3:5790700-5790719	MS.gene052115:intron	25.0%
	ACACATAACCTTTCAATTCA+AGG	+	chr2.3:5791304-5791323	MS.gene052115:intron	30.0%
	ACTCTTTCTGACAATATGAA+AGG	-	chr2.3:5790404-5790423	None:intergenic	30.0%
	ATTTAGTCCCTTGAATTGAA+AGG	-	chr2.3:5791315-5791334	None:intergenic	30.0%
	CACATAACCTTTCAATTCAA+GGG	+	chr2.3:5791305-5791324	MS.gene052115:intron	30.0%
	CCTAACTGTCAAATCAAAAT+TGG	+	chr2.3:5790953-5790972	MS.gene052115:intron	30.0%
	GGAAATGAATTTGTAAAAGC+TGG	+	chr2.3:5791827-5791846	MS.gene052115:intron	30.0%
	GTATATGTTGGAACAGAATA+CGG	+	chr2.3:5791607-5791626	MS.gene052115:CDS	30.0%
	TATATGTTGGAACAGAATAC+GGG	+	chr2.3:5791608-5791627	MS.gene052115:CDS	30.0%
	TATTTATCAAAGTCTGAACG+CGG	-	chr2.3:5790984-5791003	None:intergenic	30.0%
	TCTTAGCTAGGGAAAAATAA+TGG	+	chr2.3:5790864-5790883	MS.gene052115:intron	30.0%
	TTCTGTTTCGTAAATTTGAG+GGG	+	chr2.3:5791335-5791354	MS.gene052115:intron	30.0%
!	ATCTGGATTCTCTCATTTTA+GGG	+	chr2.3:5790902-5790921	MS.gene052115:intron	30.0%
!	GTATCATCATCTTTGCATTT+TGG	-	chr2.3:5791010-5791029	None:intergenic	30.0%
!	TGTGTACACTTTCTTTTAGA+CGG	+	chr2.3:5791860-5791879	MS.gene052115:intron	30.0%
!	TTATCTAAGAGTAGAGTGTT+GGG	+	chr2.3:5790833-5790852	MS.gene052115:intron	30.0%
!!	AGTCTTTCATTGACTTTGAT+AGG	-	chr2.3:5791218-5791237	None:intergenic	30.0%
!!	CTTGATTTGTCAGTATAGAT+CGG	+	chr2.3:5791044-5791063	MS.gene052115:intron	30.0%
!!	GACTAAAATGCTGATTTACT+TGG	+	chr2.3:5791388-5791407	MS.gene052115:intron	30.0%
!!	GTTATCATGGTTGATTCTTT+TGG	+	chr2.3:5790699-5790718	MS.gene052115:intron	30.0%
!!	TATCATGGTTGATTCTTTTG+GGG	+	chr2.3:5790701-5790720	MS.gene052115:intron	30.0%
!!	TTTCATTGACTTTGATAGGA+GGG	-	chr2.3:5791214-5791233	None:intergenic	30.0%
!!!	CCAATTTTGATTTGACAGTT+AGG	-	chr2.3:5790956-5790975	None:intergenic	30.0%
	AACCATCAACAGCTAGATTA+AGG	-	chr2.3:5790251-5790270	None:intergenic	35.0%
	AACCTGAAAAAGAAGAAGGT+TGG	-	chr2.3:5790353-5790372	None:intergenic	35.0%
	ACTGGGTAATTCTCTCAATA+GGG	+	chr2.3:5791656-5791675	MS.gene052115:intron	35.0%
	ATATGTTGGAACAGAATACG+GGG	+	chr2.3:5791609-5791628	MS.gene052115:CDS	35.0%
	ATTTATCAAAGTCTGAACGC+GGG	-	chr2.3:5790983-5791002	None:intergenic	35.0%
	CTTATCTAAGAGTAGAGTGT+TGG	+	chr2.3:5790832-5790851	MS.gene052115:intron	35.0%
	GCAGTACATCAAAAGACAAA+GGG	-	chr2.3:5791959-5791978	None:intergenic	35.0%
	GCGTTCAGACTTTGATAAAT+AGG	+	chr2.3:5790983-5791002	MS.gene052115:intron	35.0%
	TAACAAAACATGTCTGTTCC+AGG	+	chr2.3:5790612-5790631	MS.gene052115:intron	35.0%
	TCAACAGCTAGATTAAGGAA+AGG	-	chr2.3:5790246-5790265	None:intergenic	35.0%
	TCATTACTTGAAACACTTCC+TGG	-	chr2.3:5790633-5790652	None:intergenic	35.0%
	TCTAAATTCTCAAAAGGGCA+TGG	+	chr2.3:5791096-5791115	MS.gene052115:intron	35.0%
	TGCAGTACATCAAAAGACAA+AGG	-	chr2.3:5791960-5791979	None:intergenic	35.0%
	TTCCTTAATCTAGCTGTTGA+TGG	+	chr2.3:5790246-5790265	MS.gene052115:CDS	35.0%
!	AACCAACCTTCTTCTTTTTC+AGG	+	chr2.3:5790348-5790367	MS.gene052115:intron	35.0%
!	AACCAGCTTGTACAATTTTG+AGG	+	chr2.3:5791366-5791385	MS.gene052115:intron	35.0%
!	CTAAATTCTCAAAAGGGCAT+GGG	+	chr2.3:5791097-5791116	MS.gene052115:intron	35.0%
!	GATCTGGATTCTCTCATTTT+AGG	+	chr2.3:5790901-5790920	MS.gene052115:intron	35.0%
!	TGAAAAAGAAGAAGGTTGGT+TGG	-	chr2.3:5790349-5790368	None:intergenic	35.0%
!!	CTTTCATTGACTTTGATAGG+AGG	-	chr2.3:5791215-5791234	None:intergenic	35.0%
!!	GTTGATGGTTTCTTGAAGAT+TGG	+	chr2.3:5790261-5790280	MS.gene052115:CDS	35.0%
!!!	CTTGTCTTTTTTGTTGTTGC+TGG	-	chr2.3:5792033-5792052	None:intergenic	35.0%
	AAAAGACAAAGGGAACAGAG+TGG	-	chr2.3:5791949-5791968	None:intergenic	40.0%
	AGCTAGGGAAAAATAATGGC+AGG	+	chr2.3:5790868-5790887	MS.gene052115:intron	40.0%
	ATGAGAGAATCCAGATCTAG+AGG	-	chr2.3:5790898-5790917	None:intergenic	40.0%
	ATTGCAGTAGATGCCATTAC+AGG	+	chr2.3:5792053-5792072	MS.gene052115:CDS	40.0%
	CAAAAGGGCTATAGCAAAAG+TGG	-	chr2.3:5790437-5790456	None:intergenic	40.0%
	CTGCAACCTGAAAAAGAAGA+AGG	-	chr2.3:5790357-5790376	None:intergenic	40.0%
	GACTGGGTAATTCTCTCAAT+AGG	+	chr2.3:5791655-5791674	MS.gene052115:intron	40.0%
	GCTAGGGAAAAATAATGGCA+GGG	+	chr2.3:5790869-5790888	MS.gene052115:intron	40.0%
	GTCCTCAAAATTGTACAAGC+TGG	-	chr2.3:5791371-5791390	None:intergenic	40.0%
	GTGGATGTGGTTATAGACAT+GGG	+	chr2.3:5790216-5790235	MS.gene052115:CDS	40.0%
	GTGTAGCACCACAATTTCAA+AGG	-	chr2.3:5791288-5791307	None:intergenic	40.0%
	GTTTATGAATTCTGCAGCAG+TGG	-	chr2.3:5792090-5792109	None:intergenic	40.0%
	TCAGTTGAGAGTCTTACCTA+AGG	+	chr2.3:5791922-5791941	MS.gene052115:intron	40.0%
	TTGCAGTAGATGCCATTACA+GGG	+	chr2.3:5792054-5792073	MS.gene052115:CDS	40.0%
	TTTCGGTCTTCGAAATTGCA+AGG	+	chr2.3:5791141-5791160	MS.gene052115:intron	40.0%
!	ATTTTCCTTTCTACGCTCAC+AGG	+	chr2.3:5791571-5791590	MS.gene052115:intron	40.0%
!!!	TTTTCAGGTTGCAGCTACAA+GGG	+	chr2.3:5790363-5790382	MS.gene052115:intron	40.0%
!!!	TTTTTCAGGTTGCAGCTACA+AGG	+	chr2.3:5790362-5790381	MS.gene052115:intron	40.0%
	ATGCCTTGGAGCAGAATTTC+CGG	+	chr2.3:5790174-5790193	MS.gene052115:CDS	45.0%
	CTGAAGAAGATGTGCAAGGA+AGG	+	chr2.3:5791469-5791488	MS.gene052115:CDS	45.0%
	CTGCAGAAGAATGCCATGAT+CGG	+	chr2.3:5791975-5791994	MS.gene052115:intron	45.0%
	GCTATAGGTGGCGTATATGT+TGG	+	chr2.3:5791595-5791614	MS.gene052115:CDS	45.0%
	GGGTAATTCTCTCAATAGGG+TGG	+	chr2.3:5791659-5791678	MS.gene052115:intron	45.0%
	GGTGGATGTGGTTATAGACA+TGG	+	chr2.3:5790215-5790234	MS.gene052115:CDS	45.0%
	TCTATAACCACATCCACCTG+TGG	-	chr2.3:5790213-5790232	None:intergenic	45.0%
	TGAGAGAATTACCCAGTCTC+TGG	-	chr2.3:5791653-5791672	None:intergenic	45.0%
	TGCAGTAGATGCCATTACAG+GGG	+	chr2.3:5792055-5792074	MS.gene052115:CDS	45.0%
!!	GGGAGGTTTAGTCTTAGCTA+GGG	+	chr2.3:5790853-5790872	MS.gene052115:intron	45.0%
!!	TCTAAGAGTAGAGTGTTGGG+AGG	+	chr2.3:5790836-5790855	MS.gene052115:intron	45.0%
!!	TGGGAGGTTTAGTCTTAGCT+AGG	+	chr2.3:5790852-5790871	MS.gene052115:intron	45.0%
	AAGGGAACAGAGTGGTCCTT+AGG	-	chr2.3:5791941-5791960	None:intergenic	50.0%
	CAGAAGAATGCCATGATCGG+AGG	+	chr2.3:5791978-5791997	MS.gene052115:intron	50.0%
	GAACAGAATACGGGGTAGAG+AGG	+	chr2.3:5791617-5791636	MS.gene052115:CDS	50.0%
	GCAGCTGAAGAAGATGTGCA+AGG	+	chr2.3:5791465-5791484	MS.gene052115:intron	50.0%
	TAGCTCCTGTGAGCGTAGAA+AGG	-	chr2.3:5791579-5791598	None:intergenic	50.0%
	TCTACGCTCACAGGAGCTAT+AGG	+	chr2.3:5791580-5791599	MS.gene052115:intron	50.0%
	TGCCTTGGAGCAGAATTTCC+GGG	+	chr2.3:5790175-5790194	MS.gene052115:CDS	50.0%
	TGGACTTGTCGTCAACGTGA+TGG	+	chr2.3:5791757-5791776	MS.gene052115:intron	50.0%
!	GTGCAAGGAAGGTGCATACT+GGG	+	chr2.3:5791480-5791499	MS.gene052115:CDS	50.0%
!	TGCAAGGAAGGTGCATACTG+GGG	+	chr2.3:5791481-5791500	MS.gene052115:CDS	50.0%
!	TGTGCAAGGAAGGTGCATAC+TGG	+	chr2.3:5791479-5791498	MS.gene052115:CDS	50.0%
	ACGCTCACAGGAGCTATAGG+TGG	+	chr2.3:5791583-5791602	MS.gene052115:intron	55.0%
	CTGTGGAGAAGACACTGACC+CGG	-	chr2.3:5790196-5790215	None:intergenic	55.0%
	GAATGCCATGATCGGAGGTG+CGG	+	chr2.3:5791983-5792002	MS.gene052115:CDS	55.0%
	GACCCGGAAATTCTGCTCCA+AGG	-	chr2.3:5790180-5790199	None:intergenic	55.0%
	GGCAATTGCAGCCCCTGTAA+TGG	-	chr2.3:5792069-5792088	None:intergenic	55.0%
	GGCAGGGAAACCTCTAGATC+TGG	+	chr2.3:5790885-5790904	MS.gene052115:intron	55.0%
	GTCAGTGTCTTCTCCACAGG+TGG	+	chr2.3:5790197-5790216	MS.gene052115:CDS	55.0%
	GTCTTCTCCACAGGTGGATG+TGG	+	chr2.3:5790203-5790222	MS.gene052115:CDS	55.0%
!	TTACCCAGTCTCTGGTGCCA+CGG	-	chr2.3:5791645-5791664	None:intergenic	55.0%
!!	AGCTACAAGGGCACTTGCAG+AGG	+	chr2.3:5790375-5790394	MS.gene052115:CDS	55.0%
	CGGGTCAGTGTCTTCTCCAC+AGG	+	chr2.3:5790194-5790213	MS.gene052115:CDS	60.0%
	GATCCGTGGCACCAGAGACT+GGG	+	chr2.3:5791639-5791658	MS.gene052115:CDS	60.0%
	TACGGGGTAGAGAGGATCCG+TGG	+	chr2.3:5791625-5791644	MS.gene052115:CDS	60.0%
	TGTCACCGCACCTCCGATCA+TGG	-	chr2.3:5791991-5792010	None:intergenic	60.0%
!	ATGATCGGAGGTGCGGTGAC+AGG	+	chr2.3:5791990-5792009	MS.gene052115:CDS	60.0%
!	TGATCGGAGGTGCGGTGACA+GGG	+	chr2.3:5791991-5792010	MS.gene052115:CDS	60.0%
	GGATCCGTGGCACCAGAGAC+TGG	+	chr2.3:5791638-5791657	MS.gene052115:CDS	65.0%
!	GATCGGAGGTGCGGTGACAG+GGG	+	chr2.3:5791992-5792011	MS.gene052115:CDS	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr2.3	gene	5790174	5792121	5790174	ID=MS.gene052115
chr2.3	mRNA	5790174	5792121	5790174	ID=MS.gene052115.t1;Parent=MS.gene052115
chr2.3	exon	5790174	5790287	5790174	ID=MS.gene052115.t1.exon1;Parent=MS.gene052115.t1
chr2.3	CDS	5790174	5790287	5790174	ID=cds.MS.gene052115.t1;Parent=MS.gene052115.t1
chr2.3	exon	5790370	5790421	5790370	ID=MS.gene052115.t1.exon2;Parent=MS.gene052115.t1
chr2.3	CDS	5790370	5790421	5790370	ID=cds.MS.gene052115.t1;Parent=MS.gene052115.t1
chr2.3	exon	5790634	5790665	5790634	ID=MS.gene052115.t1.exon3;Parent=MS.gene052115.t1
chr2.3	CDS	5790634	5790665	5790634	ID=cds.MS.gene052115.t1;Parent=MS.gene052115.t1
chr2.3	exon	5791469	5791502	5791469	ID=MS.gene052115.t1.exon4;Parent=MS.gene052115.t1
chr2.3	CDS	5791469	5791502	5791469	ID=cds.MS.gene052115.t1;Parent=MS.gene052115.t1
chr2.3	exon	5791593	5791660	5791593	ID=MS.gene052115.t1.exon5;Parent=MS.gene052115.t1
chr2.3	CDS	5791593	5791660	5791593	ID=cds.MS.gene052115.t1;Parent=MS.gene052115.t1
chr2.3	exon	5791981	5792121	5791981	ID=MS.gene052115.t1.exon6;Parent=MS.gene052115.t1
chr2.3	CDS	5791981	5792121	5791981	ID=cds.MS.gene052115.t1;Parent=MS.gene052115.t1

Gene Sequence

>MS.gene052115

ATGCCTTGGAGCAGAATTTCCGGGTCAGTGTCTTCTCCACAGGTGGATGTGGTTATAGACATGGGAAATCCTTTCCTTAATCTAGCTGTTGATGGTTTCTTGAAGATTGGAACTGTAATTTCTTAATTTTTTCAATTGTTTATCTTTCTTCTTTTATCTTAAACTATCTGAACCAACCAACCTTCTTCTTTTTCAGGTTGCAGCTACAAGGGCACTTGCAGAGGATACCTTTCATATTGTCAGAAAGAGTTAGTGTTTCTCCACTTTTGCTATAGCCCTTTTGTTAAAATTGTCAAAAGATGAAAAATTTGATTCTGGTTTATTATTGTTTCCTTGTTTAGATTTGTGTTATTATAGACCAATATCAATGTGTTAAATTTCAGTGTTTCCTTTTTCTTTTTGAAGTATTGTTTTGATTTGTGAAGATCTTTGTCTGACTAACAAAACATGTCTGTTCCAGGAAGTGTTTCAAGTAATGATTTTGAGAAAACTGTAAGTTTGTTATTTTAAGTATTTAACATTGTTGTTATCATGGTTGATTCTTTTGGGGTGACTTTAGTTCCTGAAAATCTATGCTGATATTTCCAGTTTTATACATTTCTAATTGTGAGTATTTTACAGATTGGTAATTTTTATGATGCTTCCTTTTTCATCATAGCTTATCTAAGAGTAGAGTGTTGGGAGGTTTAGTCTTAGCTAGGGAAAAATAATGGCAGGGAAACCTCTAGATCTGGATTCTCTCATTTTAGGGAATCACACATTTGACGCAATAACATGATCCTAACTGTCAAATCAAAATTGGATGACCCGCGTTCAGACTTTGATAAATAGGTCCAAAATGCAAAGATGATGATACATGAGTCATCTAATCTTGATTTGTCAGTATAGATCGGCAGCTGTACGAGTGCATGAGCTTTGAGAATCTAAATTCTCAAAAGGGCATGGGATTATGTGAGTAAAATAAGCATTTCGGTCTTCGAAATTGCAAGGATCGAGCAGCTTAGTCCCTTTAATTAATGAATTTCAATCAATTTTGTCCCTCCTATCAAAGTCAATGAAAGACTTACATATTCACTTACATAGTCTTTTGCTACATCAAGACAACATATAACCTTTGAAATTGTGGTGCTACACATAACCTTTCAATTCAAGGGACTAAATTTCTGTTTCGTAAATTTGAGGGGCTAAGTAGAACCAGCTTGTACAATTTTGAGGACTAAAATGCTGATTTACTTGGTATTTTGTTGAGCACAATATGTTTTGTTCCTTGTTAATGAGAGATAATCTTGTTGCAGCTGAAGAAGATGTGCAAGGAAGGTGCATACTGGGGTAAGACTTGTGTTGCATTATGTAATATGGCAAGTTCAACTAGTAAATACATTAGCTCTATTTAATGTATTTTCCTTTCTACGCTCACAGGAGCTATAGGTGGCGTATATGTTGGAACAGAATACGGGGTAGAGAGGATCCGTGGCACCAGAGACTGGGTAATTCTCTCAATAGGGTGGTCATTGAAATTTGAAAATTCTTTAAATAGACTCGATATTATCGTACATTCTGTGCTAGAGAAAACACTTTATTTTTGGACTTGTCGTCAACGTGATGGCATCTAATCTCATAGATTTCAAGCTGTTATTAACAAGCATCATGTTTGGAAATGAATTTGTAAAAGCTGGGTGTTAAATGTGTGTACACTTTCTTTTAGACGGTGCAACATGTATTTTATAGTTCAATTTAAATTTGATTTTTCAGTTGAGAGTCTTACCTAAGGACCACTCTGTTCCCTTTGTCTTTTGATGTACTGCAGAAGAATGCCATGATCGGAGGTGCGGTGACAGGGGCTCTAGTATCTGCAGCCAGCAACAACAAAAAAGACAAGATTGCAGTAGATGCCATTACAGGGGCTGCAATTGCCACTGCTGCAGAATTCATAAACCACTTTACCTGA

Protein sequence

>MS.gene052115.t1

MPWSRISGSVSSPQVDVVIDMGNPFLNLAVDGFLKIGTVAATRALAEDTFHIVRKRSVSSNDFEKTLKKMCKEGAYWGAIGGVYVGTEYGVERIRGTRDWKNAMIGGAVTGALVSAASNNKKDKIAVDAITGAAIATAAEFINHFT