Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050629.t1 | XP_003626547.1 | 98.9 | 174 | 2 | 0 | 1 | 174 | 1 | 174 | 1.20E-95 | 359 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050629.t1 | Q8LGI8 | 92.5 | 174 | 13 | 0 | 1 | 174 | 1 | 174 | 6.5e-93 | 341.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050629.t1 | G7L415 | 98.9 | 174 | 2 | 0 | 1 | 174 | 1 | 174 | 9.0e-96 | 359.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene050629.t1 | TR | GNAT |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04915 | MS.gene050629 | -0.80726 | 5.51E-50 | -1.69E-46 |
| MS.gene049178 | MS.gene050629 | -0.806666 | 7.36E-50 | -1.69E-46 |
| MS.gene04917 | MS.gene050629 | -0.804753 | 1.86E-49 | -1.69E-46 |
| MS.gene049382 | MS.gene050629 | -0.800324 | 1.52E-48 | -1.69E-46 |
| MS.gene050629 | MS.gene050762 | -0.847916 | 8.54E-60 | -1.69E-46 |
| MS.gene050629 | MS.gene050763 | -0.848395 | 6.30E-60 | -1.69E-46 |
| MS.gene050629 | MS.gene054379 | -0.853637 | 2.09E-61 | -1.69E-46 |
| MS.gene050629 | MS.gene056522 | 0.819228 | 1.30E-52 | -1.69E-46 |
| MS.gene050629 | MS.gene05761 | -0.82784 | 1.25E-54 | -1.69E-46 |
| MS.gene050629 | MS.gene057721 | -0.805321 | 1.41E-49 | -1.69E-46 |
| MS.gene050629 | MS.gene058182 | -0.804026 | 2.63E-49 | -1.69E-46 |
| MS.gene050629 | MS.gene059713 | -0.821564 | 3.78E-53 | -1.69E-46 |
| MS.gene050629 | MS.gene060683 | -0.825896 | 3.65E-54 | -1.69E-46 |
| MS.gene050629 | MS.gene060685 | -0.823996 | 1.03E-53 | -1.69E-46 |
| MS.gene050629 | MS.gene060869 | -0.826629 | 2.44E-54 | -1.69E-46 |
| MS.gene050629 | MS.gene060870 | -0.808442 | 3.09E-50 | -1.69E-46 |
| MS.gene050629 | MS.gene060998 | -0.806372 | 8.49E-50 | -1.69E-46 |
| MS.gene050629 | MS.gene061958 | -0.81831 | 2.10E-52 | -1.69E-46 |
| MS.gene050629 | MS.gene062255 | -0.813679 | 2.27E-51 | -1.69E-46 |
| MS.gene050629 | MS.gene063370 | 0.804253 | 2.36E-49 | -1.69E-46 |
| MS.gene050629 | MS.gene064336 | -0.803972 | 2.70E-49 | -1.69E-46 |
| MS.gene050629 | MS.gene065382 | -0.806932 | 6.47E-50 | -1.69E-46 |
| MS.gene050629 | MS.gene069571 | 0.828147 | 1.06E-54 | -1.69E-46 |
| MS.gene050629 | MS.gene071699 | -0.81781 | 2.72E-52 | -1.69E-46 |
| MS.gene050629 | MS.gene072087 | 0.816571 | 5.16E-52 | -1.69E-46 |
| MS.gene050629 | MS.gene072285 | 0.806012 | 1.01E-49 | -1.69E-46 |
| MS.gene050629 | MS.gene072564 | -0.838045 | 3.63E-57 | -1.69E-46 |
| MS.gene050629 | MS.gene072565 | -0.835778 | 1.38E-56 | -1.69E-46 |
| MS.gene050629 | MS.gene072907 | -0.83304 | 6.70E-56 | -1.69E-46 |
| MS.gene050629 | MS.gene07352 | 0.844816 | 5.98E-59 | -1.69E-46 |
| MS.gene050629 | MS.gene08797 | 0.813683 | 2.26E-51 | -1.69E-46 |
| MS.gene050629 | MS.gene20392 | -0.803102 | 4.09E-49 | -1.69E-46 |
| MS.gene050629 | MS.gene21200 | -0.800115 | 1.68E-48 | -1.69E-46 |
| MS.gene050629 | MS.gene21434 | 0.838686 | 2.48E-57 | -1.69E-46 |
| MS.gene050629 | MS.gene22119 | -0.801007 | 1.10E-48 | -1.69E-46 |
| MS.gene050629 | MS.gene22311 | 0.822239 | 2.63E-53 | -1.69E-46 |
| MS.gene050629 | MS.gene22769 | 0.807578 | 4.72E-50 | -1.69E-46 |
| MS.gene050629 | MS.gene23963 | -0.80309 | 4.11E-49 | -1.69E-46 |
| MS.gene050629 | MS.gene24417 | -0.835504 | 1.62E-56 | -1.69E-46 |
| MS.gene050629 | MS.gene26288 | -0.816352 | 5.78E-52 | -1.69E-46 |
| MS.gene050629 | MS.gene27008 | -0.808735 | 2.68E-50 | -1.69E-46 |
| MS.gene050629 | MS.gene27393 | -0.801758 | 7.74E-49 | -1.69E-46 |
| MS.gene050629 | MS.gene27501 | -0.801244 | 9.87E-49 | -1.69E-46 |
| MS.gene050629 | MS.gene29361 | -0.816913 | 4.33E-52 | -1.69E-46 |
| MS.gene050629 | MS.gene30964 | -0.818338 | 2.06E-52 | -1.69E-46 |
| MS.gene050629 | MS.gene31148 | -0.815154 | 1.07E-51 | -1.69E-46 |
| MS.gene050629 | MS.gene32863 | -0.809668 | 1.69E-50 | -1.69E-46 |
| MS.gene050629 | MS.gene35503 | 0.822322 | 2.52E-53 | -1.69E-46 |
| MS.gene050629 | MS.gene35822 | -0.814375 | 1.59E-51 | -1.69E-46 |
| MS.gene050629 | MS.gene35824 | -0.803847 | 2.87E-49 | -1.69E-46 |
| MS.gene050629 | MS.gene35867 | -0.805623 | 1.22E-49 | -1.69E-46 |
| MS.gene050629 | MS.gene35930 | -0.802298 | 6.00E-49 | -1.69E-46 |
| MS.gene050629 | MS.gene36290 | -0.81452 | 1.48E-51 | -1.69E-46 |
| MS.gene050629 | MS.gene37468 | -0.827722 | 1.34E-54 | -1.69E-46 |
| MS.gene050629 | MS.gene37653 | -0.827084 | 1.90E-54 | -1.69E-46 |
| MS.gene050629 | MS.gene37988 | -0.804785 | 1.83E-49 | -1.69E-46 |
| MS.gene050629 | MS.gene37989 | -0.816827 | 4.52E-52 | -1.69E-46 |
| MS.gene050629 | MS.gene38261 | -0.813651 | 2.30E-51 | -1.69E-46 |
| MS.gene050629 | MS.gene41427 | -0.803083 | 4.13E-49 | -1.69E-46 |
| MS.gene050629 | MS.gene41630 | -0.81438 | 1.59E-51 | -1.69E-46 |
| MS.gene050629 | MS.gene44001 | -0.809859 | 1.54E-50 | -1.69E-46 |
| MS.gene050629 | MS.gene44007 | -0.834633 | 2.68E-56 | -1.69E-46 |
| MS.gene050629 | MS.gene44135 | 0.847511 | 1.10E-59 | -1.69E-46 |
| MS.gene050629 | MS.gene45193 | -0.816192 | 6.28E-52 | -1.69E-46 |
| MS.gene050629 | MS.gene45194 | -0.808905 | 2.46E-50 | -1.69E-46 |
| MS.gene050629 | MS.gene45407 | 0.853859 | 1.81E-61 | -1.69E-46 |
| MS.gene050629 | MS.gene45498 | -0.818755 | 1.66E-52 | -1.69E-46 |
| MS.gene050629 | MS.gene46069 | 0.826734 | 2.31E-54 | -1.69E-46 |
| MS.gene050629 | MS.gene47516 | -0.801779 | 7.66E-49 | -1.69E-46 |
| MS.gene050629 | MS.gene48054 | -0.830584 | 2.71E-55 | -1.69E-46 |
| MS.gene050629 | MS.gene49486 | -0.812464 | 4.19E-51 | -1.69E-46 |
| MS.gene050629 | MS.gene49665 | -0.823004 | 1.75E-53 | -1.69E-46 |
| MS.gene050629 | MS.gene52610 | -0.818511 | 1.89E-52 | -1.69E-46 |
| MS.gene050629 | MS.gene57160 | 0.817735 | 2.83E-52 | -1.69E-46 |
| MS.gene050629 | MS.gene57162 | 0.837965 | 3.81E-57 | -1.69E-46 |
| MS.gene050629 | MS.gene57217 | 0.815317 | 9.84E-52 | -1.69E-46 |
| MS.gene050629 | MS.gene57725 | -0.815775 | 7.78E-52 | -1.69E-46 |
| MS.gene050629 | MS.gene58092 | -0.818224 | 2.19E-52 | -1.69E-46 |
| MS.gene050629 | MS.gene58486 | 0.81665 | 4.96E-52 | -1.69E-46 |
| MS.gene050629 | MS.gene60144 | -0.814321 | 1.64E-51 | -1.69E-46 |
| MS.gene050629 | MS.gene60565 | -0.808212 | 3.46E-50 | -1.69E-46 |
| MS.gene050629 | MS.gene62394 | -0.819798 | 9.61E-53 | -1.69E-46 |
| MS.gene050629 | MS.gene62587 | -0.802246 | 6.15E-49 | -1.69E-46 |
| MS.gene050629 | MS.gene62847 | 0.802153 | 6.42E-49 | -1.69E-46 |
| MS.gene050629 | MS.gene63058 | -0.802054 | 6.73E-49 | -1.69E-46 |
| MS.gene050629 | MS.gene63281 | -0.808801 | 2.59E-50 | -1.69E-46 |
| MS.gene050629 | MS.gene63887 | -0.83837 | 2.99E-57 | -1.69E-46 |
| MS.gene050629 | MS.gene67141 | -0.806228 | 9.11E-50 | -1.69E-46 |
| MS.gene050629 | MS.gene68773 | -0.808825 | 2.56E-50 | -1.69E-46 |
| MS.gene050629 | MS.gene69935 | -0.809408 | 1.92E-50 | -1.69E-46 |
| MS.gene050629 | MS.gene70237 | -0.81514 | 1.08E-51 | -1.69E-46 |
| MS.gene050629 | MS.gene70331 | -0.818261 | 2.15E-52 | -1.69E-46 |
| MS.gene050629 | MS.gene70819 | -0.856702 | 2.69E-62 | -1.69E-46 |
| MS.gene050629 | MS.gene70989 | 0.858165 | 9.93E-63 | -1.69E-46 |
| MS.gene050629 | MS.gene71871 | -0.819565 | 1.09E-52 | -1.69E-46 |
| MS.gene050629 | MS.gene71890 | 0.824522 | 7.71E-54 | -1.69E-46 |
| MS.gene050629 | MS.gene72851 | 0.802435 | 5.62E-49 | -1.69E-46 |
| MS.gene050629 | MS.gene73273 | -0.808207 | 3.47E-50 | -1.69E-46 |
| MS.gene050629 | MS.gene74967 | -0.817897 | 2.60E-52 | -1.69E-46 |
| MS.gene050629 | MS.gene78247 | -0.816075 | 6.67E-52 | -1.69E-46 |
| MS.gene050629 | MS.gene80298 | -0.812933 | 3.30E-51 | -1.69E-46 |
| MS.gene050629 | MS.gene81285 | -0.820895 | 5.39E-53 | -1.69E-46 |
| MS.gene050629 | MS.gene81381 | -0.84172 | 4.00E-58 | -1.69E-46 |
| MS.gene050629 | MS.gene81745 | -0.806315 | 8.73E-50 | -1.69E-46 |
| MS.gene050629 | MS.gene82350 | -0.808952 | 2.41E-50 | -1.69E-46 |
| MS.gene050629 | MS.gene82352 | -0.801712 | 7.91E-49 | -1.69E-46 |
| MS.gene050629 | MS.gene82978 | -0.802853 | 4.61E-49 | -1.69E-46 |
| MS.gene050629 | MS.gene84981 | 0.82071 | 5.94E-53 | -1.69E-46 |
| MS.gene050629 | MS.gene89434 | -0.805171 | 1.52E-49 | -1.69E-46 |
| MS.gene050629 | MS.gene89581 | -0.803264 | 3.79E-49 | -1.69E-46 |
| MS.gene050629 | MS.gene89657 | 0.807629 | 4.60E-50 | -1.69E-46 |
| MS.gene050629 | MS.gene93457 | -0.807901 | 4.03E-50 | -1.69E-46 |
| MS.gene050629 | MS.gene95208 | -0.806255 | 8.99E-50 | -1.69E-46 |
| MS.gene050629 | MS.gene96598 | -0.829795 | 4.21E-55 | -1.69E-46 |
| MS.gene050629 | MS.gene97270 | -0.800727 | 1.26E-48 | -1.69E-46 |
| MS.gene050629 | MS.gene97782 | -0.813968 | 1.96E-51 | -1.69E-46 |
| MS.gene050629 | MS.gene97896 | -0.807022 | 6.19E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene050629 | MS.gene51964 | PPI |
| MS.gene63427 | MS.gene050629 | PPI |
| MS.gene050629 | MS.gene019081 | PPI |
| MS.gene95934 | MS.gene050629 | PPI |
| MS.gene51687 | MS.gene050629 | PPI |
| MS.gene050629 | MS.gene009509 | PPI |
| MS.gene050629 | MS.gene92650 | PPI |
| MS.gene050629 | MS.gene51967 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050629.t1 | MTR_7g117040 | 98.851 | 174 | 2 | 0 | 1 | 174 | 1 | 174 | 3.23e-131 | 364 |
| MS.gene050629.t1 | MTR_7g117040 | 96.552 | 174 | 2 | 1 | 1 | 174 | 1 | 170 | 1.18e-125 | 350 |
| MS.gene050629.t1 | MTR_7g117040 | 94.253 | 174 | 3 | 1 | 1 | 174 | 1 | 167 | 4.40e-122 | 341 |
| MS.gene050629.t1 | MTR_3g034200 | 35.762 | 151 | 96 | 1 | 1 | 150 | 1 | 151 | 3.41e-28 | 103 |
| MS.gene050629.t1 | MTR_3g030055 | 27.679 | 112 | 76 | 2 | 39 | 150 | 42 | 148 | 3.84e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050629.t1 | AT1G03150 | 92.529 | 174 | 13 | 0 | 1 | 174 | 1 | 174 | 1.68e-124 | 347 |
| MS.gene050629.t1 | AT5G13780 | 36.424 | 151 | 95 | 1 | 1 | 150 | 1 | 151 | 1.24e-27 | 102 |
Find 44 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGAAGATTCATTAGTTTCT+TGG | 0.211108 | 7.3:-1145577 | None:intergenic |
| CGAGTGCTACGCTATTATTC+TGG | 0.267608 | 7.3:+1147444 | MS.gene050629:CDS |
| TGATATGGTTACCGGGGCCT+TGG | 0.305955 | 7.3:-1145376 | None:intergenic |
| CACAAATAGATCAACAAAAT+AGG | 0.329063 | 7.3:-1145708 | None:intergenic |
| ACTTACTGTAACCCATGATA+TGG | 0.371450 | 7.3:-1145391 | None:intergenic |
| TAATTGTTGCCTGCGATACT+CGG | 0.380713 | 7.3:-1145553 | None:intergenic |
| GTAACCCATGATATGGTTAC+CGG | 0.405860 | 7.3:-1145384 | None:intergenic |
| TTCTGGGGAAGAAGATGGAT+TGG | 0.420903 | 7.3:+1147461 | MS.gene050629:CDS |
| GATATGGTTACCGGGGCCTT+GGG | 0.427052 | 7.3:-1145375 | None:intergenic |
| GGTTACCGGGGCCTTGGGCG+AGG | 0.434572 | 7.3:-1145370 | None:intergenic |
| TAGTCGTACTCTAACTCATC+AGG | 0.466585 | 7.3:-1147652 | None:intergenic |
| GAGTGCTACGCTATTATTCT+GGG | 0.472245 | 7.3:+1147445 | MS.gene050629:CDS |
| TTGGGCGAGGTGGAAATAGT+CGG | 0.473599 | 7.3:-1145357 | None:intergenic |
| TCTGGGGAAGAAGATGGATT+GGG | 0.475034 | 7.3:+1147462 | MS.gene050629:CDS |
| AGCCATCAAAATGTATGAAA+AGG | 0.478370 | 7.3:+1145748 | MS.gene050629:CDS |
| GTAGTTATGGGTAAAGTTGA+GGG | 0.481119 | 7.3:+1145483 | MS.gene050629:intron |
| AGGCCCCGGTAACCATATCA+TGG | 0.483412 | 7.3:+1145379 | MS.gene050629:CDS |
| TTCCACCTCGCCCAAGGCCC+CGG | 0.488885 | 7.3:+1145365 | MS.gene050629:CDS |
| TATTATTCTGGGGAAGAAGA+TGG | 0.493124 | 7.3:+1147456 | MS.gene050629:CDS |
| GACTATTTCCACCTCGCCCA+AGG | 0.493150 | 7.3:+1145359 | MS.gene050629:CDS |
| GGAGTGACAGGTCGTTTAAG+AGG | 0.494138 | 7.3:-1147631 | None:intergenic |
| TTGAGGGGCAAGGAGAATCT+TGG | 0.494281 | 7.3:+1145499 | MS.gene050629:CDS |
| TGCTAGGTAGGTCATGTAGA+AGG | 0.496038 | 7.3:-1145327 | None:intergenic |
| TGACATTTGTAAAACGAAGA+AGG | 0.498914 | 7.3:-1145199 | None:intergenic |
| TGGGCGAGGTGGAAATAGTC+GGG | 0.499600 | 7.3:-1145356 | None:intergenic |
| TGTAGTTATGGGTAAAGTTG+AGG | 0.505774 | 7.3:+1145482 | MS.gene050629:intron |
| TACCGGGGCCTTGGGCGAGG+TGG | 0.518879 | 7.3:-1145367 | None:intergenic |
| CTGTTGCTCCCGAGTATCGC+AGG | 0.521448 | 7.3:+1145544 | MS.gene050629:CDS |
| TACATACAGTTTCAGTGAGA+TGG | 0.523499 | 7.3:-1145229 | None:intergenic |
| AATAGTCGGGCCATCGTGCT+AGG | 0.528873 | 7.3:-1145343 | None:intergenic |
| ATGGGTAAAGTTGAGGGGCA+AGG | 0.534565 | 7.3:+1145489 | MS.gene050629:CDS |
| AATTGTTGCCTGCGATACTC+GGG | 0.536449 | 7.3:-1145552 | None:intergenic |
| TCTAACTCATCAGGAGTGAC+AGG | 0.539202 | 7.3:-1147643 | None:intergenic |
| TAACCCATGATATGGTTACC+GGG | 0.568371 | 7.3:-1145383 | None:intergenic |
| GAGTGACAGGTCGTTTAAGA+GGG | 0.595531 | 7.3:-1147630 | None:intergenic |
| GGCCCCGGTAACCATATCAT+GGG | 0.604498 | 7.3:+1145380 | MS.gene050629:CDS |
| AGGTCGTTTAAGAGGGATGA+CGG | 0.617126 | 7.3:-1147623 | None:intergenic |
| TAGTTATGGGTAAAGTTGAG+GGG | 0.650869 | 7.3:+1145484 | MS.gene050629:intron |
| GGGCAAGGAGAATCTTGGCA+TGG | 0.658826 | 7.3:+1145504 | MS.gene050629:CDS |
| GTCGGGCCATCGTGCTAGGT+AGG | 0.658913 | 7.3:-1145339 | None:intergenic |
| TGAAGATGACAACAATACGT+AGG | 0.673340 | 7.3:+1145162 | None:intergenic |
| AACCCATGATATGGTTACCG+GGG | 0.702997 | 7.3:-1145382 | None:intergenic |
| AGTGCTACGCTATTATTCTG+GGG | 0.705031 | 7.3:+1147446 | MS.gene050629:CDS |
| ACATGACCTACCTAGCACGA+TGG | 0.757874 | 7.3:+1145333 | MS.gene050629:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TACAACTTTATAAGTTAAAA+CGG | - | chr7.3:1147012-1147031 | None:intergenic | 15.0% |
| !! | TTAACTTATAAAGTTGTAAT+TGG | + | chr7.3:1147014-1147033 | MS.gene050629:intron | 15.0% |
| !!! | CATTTTTAATCTTTTAGAAT+TGG | + | chr7.3:1145643-1145662 | MS.gene050629:intron | 15.0% |
| !! | AAATCAAACCTATGTTTAAT+AGG | - | chr7.3:1146870-1146889 | None:intergenic | 20.0% |
| !! | AGCTAAAAAGTGAAATAAAT+TGG | - | chr7.3:1146270-1146289 | None:intergenic | 20.0% |
| !! | ATGAAGTAAAAACAAAAACA+TGG | - | chr7.3:1147495-1147514 | None:intergenic | 20.0% |
| !! | CATTAATGTAATGTAGTTAT+GGG | + | chr7.3:1145471-1145490 | MS.gene050629:intron | 20.0% |
| !! | GCTAAAAAGTGAAATAAATT+GGG | - | chr7.3:1146269-1146288 | None:intergenic | 20.0% |
| !! | GTCTTGATATAAGTTATAAT+TGG | + | chr7.3:1145668-1145687 | MS.gene050629:intron | 20.0% |
| !! | TCATTAATGTAATGTAGTTA+TGG | + | chr7.3:1145470-1145489 | MS.gene050629:intron | 20.0% |
| !! | TTCTCATATCTGAAAATAAA+GGG | - | chr7.3:1147573-1147592 | None:intergenic | 20.0% |
| !! | TTTCTCATATCTGAAAATAA+AGG | - | chr7.3:1147574-1147593 | None:intergenic | 20.0% |
| !!! | AAAACAAAATTTTCAGATTG+TGG | + | chr7.3:1147111-1147130 | MS.gene050629:intron | 20.0% |
| !!! | TATGTTTTCTTCATTAGATT+AGG | + | chr7.3:1147342-1147361 | MS.gene050629:intron | 20.0% |
| !!! | TTTATTTTCAGATATGAGAA+AGG | + | chr7.3:1147573-1147592 | MS.gene050629:intron | 20.0% |
| !!! | TTTCATATTCAGATTTTGTT+AGG | - | chr7.3:1146771-1146790 | None:intergenic | 20.0% |
| !!! | TTTTAATCTTTTAGAATTGG+AGG | + | chr7.3:1145646-1145665 | MS.gene050629:intron | 20.0% |
| ! | AAAGAATTAGTTAGCAATTC+AGG | - | chr7.3:1147385-1147404 | None:intergenic | 25.0% |
| ! | AAATGAAAGAAAGATATGCA+AGG | - | chr7.3:1145628-1145647 | None:intergenic | 25.0% |
| ! | ACATGTTGAAAAATCATAAG+TGG | + | chr7.3:1146080-1146099 | MS.gene050629:intron | 25.0% |
| ! | ACTTTACAAATAGCATCAAA+TGG | + | chr7.3:1146817-1146836 | MS.gene050629:intron | 25.0% |
| ! | AGAAACATAATATGGAAAAG+AGG | - | chr7.3:1146518-1146537 | None:intergenic | 25.0% |
| ! | ATATAATCGAGAGAGAAAAA+AGG | - | chr7.3:1145431-1145450 | None:intergenic | 25.0% |
| ! | CACAAATAGATCAACAAAAT+AGG | - | chr7.3:1145711-1145730 | None:intergenic | 25.0% |
| ! | CAGTACATAGAAACATAATA+TGG | - | chr7.3:1146526-1146545 | None:intergenic | 25.0% |
| ! | GAAACATAATATGGAAAAGA+GGG | - | chr7.3:1146517-1146536 | None:intergenic | 25.0% |
| ! | GTTGTATAATGTACACAAAA+TGG | - | chr7.3:1146305-1146324 | None:intergenic | 25.0% |
| ! | TATAATCGAGAGAGAAAAAA+GGG | - | chr7.3:1145430-1145449 | None:intergenic | 25.0% |
| ! | TATTATTATCCAACTGATGT+GGG | - | chr7.3:1147161-1147180 | None:intergenic | 25.0% |
| ! | TGTAAATTGAATGTTGGATT+AGG | + | chr7.3:1147318-1147337 | MS.gene050629:intron | 25.0% |
| ! | TGTCATTGTAAATTGAATGT+TGG | + | chr7.3:1147312-1147331 | MS.gene050629:intron | 25.0% |
| ! | TTGAAAATAGAGTTCTTTCA+TGG | - | chr7.3:1146049-1146068 | None:intergenic | 25.0% |
| !! | AAATATTGTCTCAATGGATT+GGG | + | chr7.3:1146963-1146982 | MS.gene050629:intron | 25.0% |
| !! | ATTTTCAGATTGTGGTTTTT+TGG | + | chr7.3:1147119-1147138 | MS.gene050629:intron | 25.0% |
| !! | TAATGAGAAGTTAGATTTTG+TGG | - | chr7.3:1146120-1146139 | None:intergenic | 25.0% |
| !! | TACCTTTTCATACATTTTGA+TGG | - | chr7.3:1145753-1145772 | None:intergenic | 25.0% |
| !! | TATAAAGTTGTAATTGGTTC+AGG | + | chr7.3:1147020-1147039 | MS.gene050629:intron | 25.0% |
| !!! | ATTGTAAAAGCACTAATAAG+AGG | - | chr7.3:1146464-1146483 | None:intergenic | 25.0% |
| !!! | TTGTAAAAGCACTAATAAGA+GGG | - | chr7.3:1146463-1146482 | None:intergenic | 25.0% |
| AAAATAGAGTTCTTTCATGG+TGG | - | chr7.3:1146046-1146065 | None:intergenic | 30.0% | |
| ACAAACAACATTAAGAACGA+AGG | - | chr7.3:1145292-1145311 | None:intergenic | 30.0% | |
| ACATACAGAATCATCAAGTA+GGG | + | chr7.3:1145824-1145843 | MS.gene050629:intron | 30.0% | |
| AGCCATCAAAATGTATGAAA+AGG | + | chr7.3:1145748-1145767 | MS.gene050629:CDS | 30.0% | |
| ATAATCGAGAGAGAAAAAAG+GGG | - | chr7.3:1145429-1145448 | None:intergenic | 30.0% | |
| ATGCCTTCTGTTTAAAAACT+TGG | + | chr7.3:1146230-1146249 | MS.gene050629:intron | 30.0% | |
| CACTTAATGACTTTCTCAAT+GGG | - | chr7.3:1146357-1146376 | None:intergenic | 30.0% | |
| GAAATATTGTCTCAATGGAT+TGG | + | chr7.3:1146962-1146981 | MS.gene050629:intron | 30.0% | |
| GAGATGAAATATTGTCTCAA+TGG | + | chr7.3:1146957-1146976 | MS.gene050629:intron | 30.0% | |
| GTATTATTATCCAACTGATG+TGG | - | chr7.3:1147162-1147181 | None:intergenic | 30.0% | |
| TAAGAATTAGCATGAAGATG+AGG | - | chr7.3:1145855-1145874 | None:intergenic | 30.0% | |
| TACCAGTTAGAGAAGAAAAA+AGG | + | chr7.3:1145890-1145909 | MS.gene050629:intron | 30.0% | |
| TGACATTTGTAAAACGAAGA+AGG | - | chr7.3:1145202-1145221 | None:intergenic | 30.0% | |
| TGCCTTCTGTTTAAAAACTT+GGG | + | chr7.3:1146231-1146250 | MS.gene050629:intron | 30.0% | |
| TGTTATCTAAAAAACACCGT+AGG | - | chr7.3:1146403-1146422 | None:intergenic | 30.0% | |
| TTCTGTTTAAAAACTTGGGT+AGG | + | chr7.3:1146235-1146254 | MS.gene050629:intron | 30.0% | |
| ! | AAGTCTGTGTCACTATTTAT+TGG | + | chr7.3:1147535-1147554 | MS.gene050629:intron | 30.0% |
| ! | GAGAAGATTCATTAGTTTCT+TGG | - | chr7.3:1145580-1145599 | None:intergenic | 30.0% |
| ! | GCTTTGAACCTATTAAACAT+AGG | + | chr7.3:1146859-1146878 | MS.gene050629:intron | 30.0% |
| ! | TACCCAAGTTTTTAAACAGA+AGG | - | chr7.3:1146236-1146255 | None:intergenic | 30.0% |
| ! | TGAGATATGAATGAAAGCAT+TGG | - | chr7.3:1146562-1146581 | None:intergenic | 30.0% |
| ! | TGCTATTTAAGCTTACTTTC+TGG | + | chr7.3:1146626-1146645 | MS.gene050629:intron | 30.0% |
| !! | AATACCATTGAGTTGAGAAA+CGG | - | chr7.3:1145259-1145278 | None:intergenic | 30.0% |
| !! | AGATATGAATGAAAGCATTG+GGG | - | chr7.3:1146560-1146579 | None:intergenic | 30.0% |
| !! | GAGATATGAATGAAAGCATT+GGG | - | chr7.3:1146561-1146580 | None:intergenic | 30.0% |
| !! | GATTTTTCAACATGTTAGCT+TGG | - | chr7.3:1146075-1146094 | None:intergenic | 30.0% |
| !! | TTTTCATACATTTTGATGGC+TGG | - | chr7.3:1145749-1145768 | None:intergenic | 30.0% |
| !!! | ACTTTTTAGCTTATTTCTGC+TGG | + | chr7.3:1146279-1146298 | MS.gene050629:intron | 30.0% |
| !!! | TACCTTTTTTCTTCTCTAAC+TGG | - | chr7.3:1145895-1145914 | None:intergenic | 30.0% |
| ACTTACTGTAACCCATGATA+TGG | - | chr7.3:1145394-1145413 | None:intergenic | 35.0% | |
| AGCACTAATAAGAGGGTAAA+AGG | - | chr7.3:1146456-1146475 | None:intergenic | 35.0% | |
| ATACAGAATCATCAAGTAGG+GGG | + | chr7.3:1145826-1145845 | MS.gene050629:intron | 35.0% | |
| ATGACTTTCTCAATGGGATA+AGG | - | chr7.3:1146351-1146370 | None:intergenic | 35.0% | |
| CATACAGAATCATCAAGTAG+GGG | + | chr7.3:1145825-1145844 | MS.gene050629:intron | 35.0% | |
| CATTTCAGATTCTGTCAGAA+AGG | + | chr7.3:1145789-1145808 | MS.gene050629:intron | 35.0% | |
| GACATACAGAATCATCAAGT+AGG | + | chr7.3:1145823-1145842 | MS.gene050629:intron | 35.0% | |
| GCACTTAATGACTTTCTCAA+TGG | - | chr7.3:1146358-1146377 | None:intergenic | 35.0% | |
| GTAGTTATGGGTAAAGTTGA+GGG | + | chr7.3:1145483-1145502 | MS.gene050629:intron | 35.0% | |
| TAATCGAGAGAGAAAAAAGG+GGG | - | chr7.3:1145428-1145447 | None:intergenic | 35.0% | |
| TACATACAGTTTCAGTGAGA+TGG | - | chr7.3:1145232-1145251 | None:intergenic | 35.0% | |
| TAGTTATGGGTAAAGTTGAG+GGG | + | chr7.3:1145484-1145503 | MS.gene050629:intron | 35.0% | |
| TCCTATTTGACATCTTAGCT+TGG | + | chr7.3:1147405-1147424 | MS.gene050629:intron | 35.0% | |
| TGAGAGGAATCTCAATCAAA+CGG | + | chr7.3:1145967-1145986 | MS.gene050629:intron | 35.0% | |
| TGTAGTTATGGGTAAAGTTG+AGG | + | chr7.3:1145482-1145501 | MS.gene050629:intron | 35.0% | |
| ! | TATTATTCTGGGGAAGAAGA+TGG | + | chr7.3:1147456-1147475 | MS.gene050629:CDS | 35.0% |
| ! | TGGTCTGATTTTGCAAACAA+CGG | + | chr7.3:1147086-1147105 | MS.gene050629:intron | 35.0% |
| ! | TGTAATTGGTTCAGGTGATT+TGG | + | chr7.3:1147028-1147047 | MS.gene050629:intron | 35.0% |
| !! | CTTCACTTTTCACAAGAAGT+CGG | + | chr7.3:1146907-1146926 | MS.gene050629:intron | 35.0% |
| ACTACCGTTTCTCAACTCAA+TGG | + | chr7.3:1145252-1145271 | MS.gene050629:intron | 40.0% | |
| AGTGCTACGCTATTATTCTG+GGG | + | chr7.3:1147446-1147465 | MS.gene050629:CDS | 40.0% | |
| ATAGAGTTCTTTCATGGTGG+AGG | - | chr7.3:1146043-1146062 | None:intergenic | 40.0% | |
| CGACTTCTTGTGAAAAGTGA+AGG | - | chr7.3:1146909-1146928 | None:intergenic | 40.0% | |
| CTAAAAAACACCGTAGGACA+AGG | - | chr7.3:1146397-1146416 | None:intergenic | 40.0% | |
| CTTAGTCAGATAAGGCTTGA+TGG | + | chr7.3:1146717-1146736 | MS.gene050629:intron | 40.0% | |
| GAGAGGAATCTCAATCAAAC+GGG | + | chr7.3:1145968-1145987 | MS.gene050629:intron | 40.0% | |
| GAGTGCTACGCTATTATTCT+GGG | + | chr7.3:1147445-1147464 | MS.gene050629:CDS | 40.0% | |
| GCCAAGCTAAGATGTCAAAT+AGG | - | chr7.3:1147409-1147428 | None:intergenic | 40.0% | |
| GGTTGTAGTGTTCTACTTCA+TGG | + | chr7.3:1145989-1146008 | MS.gene050629:intron | 40.0% | |
| GTAACCCATGATATGGTTAC+CGG | - | chr7.3:1145387-1145406 | None:intergenic | 40.0% | |
| GTTATCTCGATTGCATTGAG+AGG | + | chr7.3:1145951-1145970 | MS.gene050629:intron | 40.0% | |
| TAACCCATGATATGGTTACC+GGG | - | chr7.3:1145386-1145405 | None:intergenic | 40.0% | |
| TAATTGTTGCCTGCGATACT+CGG | - | chr7.3:1145556-1145575 | None:intergenic | 40.0% | |
| TAGTCGTACTCTAACTCATC+AGG | - | chr7.3:1147655-1147674 | None:intergenic | 40.0% | |
| TTACTTTGTCCCACATCAGT+TGG | + | chr7.3:1147149-1147168 | MS.gene050629:intron | 40.0% | |
| TTTCTCAATGGGATAAGGCT+TGG | - | chr7.3:1146346-1146365 | None:intergenic | 40.0% | |
| ! | AAGCCTTATCTGACTAAGTG+GGG | - | chr7.3:1146715-1146734 | None:intergenic | 40.0% |
| ! | ACAAACAAAGCCTTGTCCTA+CGG | + | chr7.3:1146384-1146403 | MS.gene050629:intron | 40.0% |
| ! | CAAGCCTTATCTGACTAAGT+GGG | - | chr7.3:1146716-1146735 | None:intergenic | 40.0% |
| ! | TAGAGTTCTTTCATGGTGGA+GGG | - | chr7.3:1146042-1146061 | None:intergenic | 40.0% |
| ! | TCAAGCCTTATCTGACTAAG+TGG | - | chr7.3:1146717-1146736 | None:intergenic | 40.0% |
| !! | AAAGCATTGGGGACATAGTT+AGG | - | chr7.3:1146549-1146568 | None:intergenic | 40.0% |
| AACCCATGATATGGTTACCG+GGG | - | chr7.3:1145385-1145404 | None:intergenic | 45.0% | |
| AATTGTTGCCTGCGATACTC+GGG | - | chr7.3:1145555-1145574 | None:intergenic | 45.0% | |
| AGGTCGTTTAAGAGGGATGA+CGG | - | chr7.3:1147626-1147645 | None:intergenic | 45.0% | |
| CGAGTGCTACGCTATTATTC+TGG | + | chr7.3:1147444-1147463 | MS.gene050629:CDS | 45.0% | |
| GAGTGACAGGTCGTTTAAGA+GGG | - | chr7.3:1147633-1147652 | None:intergenic | 45.0% | |
| TCTAACTCATCAGGAGTGAC+AGG | - | chr7.3:1147646-1147665 | None:intergenic | 45.0% | |
| TGCTAGGTAGGTCATGTAGA+AGG | - | chr7.3:1145330-1145349 | None:intergenic | 45.0% | |
| ! | CGTAATCTGGAATTGCAAGC+TGG | + | chr7.3:1147061-1147080 | MS.gene050629:intron | 45.0% |
| ! | TCTGGAATTGCAAGCTGGTT+TGG | + | chr7.3:1147066-1147085 | MS.gene050629:intron | 45.0% |
| ! | TCTGGGGAAGAAGATGGATT+GGG | + | chr7.3:1147462-1147481 | MS.gene050629:CDS | 45.0% |
| ! | TGGCTAGTTCATGCGTAATC+TGG | + | chr7.3:1147048-1147067 | MS.gene050629:intron | 45.0% |
| ! | TTCTGGGGAAGAAGATGGAT+TGG | + | chr7.3:1147461-1147480 | MS.gene050629:CDS | 45.0% |
| !! | GGAAGAAGATGGATTGGGTA+TGG | + | chr7.3:1147467-1147486 | MS.gene050629:intron | 45.0% |
| !! | GTAGGACAAGGCTTTGTTTG+TGG | - | chr7.3:1146385-1146404 | None:intergenic | 45.0% |
| !! | ATAATAATACAATTAAATTA+AGG | + | chr7.3:1147172-1147191 | MS.gene050629:intron | 5.0% |
| !! | TAATAATACAATTAAATTAA+GGG | + | chr7.3:1147173-1147192 | MS.gene050629:intron | 5.0% |
| !! | TAATAATACAATTAAATTAA+GGG | - | chr7.3:1147192-1147173 | None:intergenic | 5.0% |
| !! | TAATTGTATTATTAAATTAA+GGG | + | chr7.3:1147245-1147264 | MS.gene050629:intron | 5.0% |
| !! | TTAATAATACAATTAAATTA+AGG | - | chr7.3:1147240-1147259 | None:intergenic | 5.0% |
| !! | TTAATTGTATTATTAAATTA+AGG | + | chr7.3:1147244-1147263 | MS.gene050629:intron | 5.0% |
| ACATGACCTACCTAGCACGA+TGG | + | chr7.3:1145333-1145352 | MS.gene050629:CDS | 50.0% | |
| AGAGGGCAGAGTCTCAACTT+AGG | - | chr7.3:1146500-1146519 | None:intergenic | 50.0% | |
| ATGGGTAAAGTTGAGGGGCA+AGG | + | chr7.3:1145489-1145508 | MS.gene050629:CDS | 50.0% | |
| CGACCCCACTTAGTCAGATA+AGG | + | chr7.3:1146709-1146728 | MS.gene050629:intron | 50.0% | |
| GAGGGTAACATCACAGGGAA+CGG | - | chr7.3:1146024-1146043 | None:intergenic | 50.0% | |
| GCAGCTACCATACTCCAAGA+TGG | - | chr7.3:1146176-1146195 | None:intergenic | 50.0% | |
| GCTACCATACTCCAAGATGG+TGG | - | chr7.3:1146173-1146192 | None:intergenic | 50.0% | |
| GGAGTGACAGGTCGTTTAAG+AGG | - | chr7.3:1147634-1147653 | None:intergenic | 50.0% | |
| TGGTGGAGGGTAACATCACA+GGG | - | chr7.3:1146029-1146048 | None:intergenic | 50.0% | |
| TTGAGGGGCAAGGAGAATCT+TGG | + | chr7.3:1145499-1145518 | MS.gene050629:CDS | 50.0% | |
| TTGGGCGAGGTGGAAATAGT+CGG | - | chr7.3:1145360-1145379 | None:intergenic | 50.0% | |
| ! | ACCATACTCCAAGATGGTGG+TGG | - | chr7.3:1146170-1146189 | None:intergenic | 50.0% |
| ! | ATGGTGGAGGGTAACATCAC+AGG | - | chr7.3:1146030-1146049 | None:intergenic | 50.0% |
| AATAGTCGGGCCATCGTGCT+AGG | - | chr7.3:1145346-1145365 | None:intergenic | 55.0% | |
| AGGCCCCGGTAACCATATCA+TGG | + | chr7.3:1145379-1145398 | MS.gene050629:CDS | 55.0% | |
| GACTATTTCCACCTCGCCCA+AGG | + | chr7.3:1145359-1145378 | MS.gene050629:CDS | 55.0% | |
| GAGAACTGCCACCACCATCT+TGG | + | chr7.3:1146159-1146178 | MS.gene050629:intron | 55.0% | |
| GATATGGTTACCGGGGCCTT+GGG | - | chr7.3:1145378-1145397 | None:intergenic | 55.0% | |
| GCCACCACCATCTTGGAGTA+TGG | + | chr7.3:1146166-1146185 | MS.gene050629:intron | 55.0% | |
| GGCCCCGGTAACCATATCAT+GGG | + | chr7.3:1145380-1145399 | MS.gene050629:CDS | 55.0% | |
| GGGCAAGGAGAATCTTGGCA+TGG | + | chr7.3:1145504-1145523 | MS.gene050629:CDS | 55.0% | |
| TGATATGGTTACCGGGGCCT+TGG | - | chr7.3:1145379-1145398 | None:intergenic | 55.0% | |
| TGGGCGAGGTGGAAATAGTC+GGG | - | chr7.3:1145359-1145378 | None:intergenic | 55.0% | |
| ! | CTGTTGCTCCCGAGTATCGC+AGG | + | chr7.3:1145544-1145563 | MS.gene050629:CDS | 60.0% |
| GTCGGGCCATCGTGCTAGGT+AGG | - | chr7.3:1145342-1145361 | None:intergenic | 65.0% | |
| TTCCACCTCGCCCAAGGCCC+CGG | + | chr7.3:1145365-1145384 | MS.gene050629:CDS | 70.0% | |
| GGTTACCGGGGCCTTGGGCG+AGG | - | chr7.3:1145373-1145392 | None:intergenic | 75.0% | |
| TACCGGGGCCTTGGGCGAGG+TGG | - | chr7.3:1145370-1145389 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 1145167 | 1147675 | 1145167 | ID=MS.gene050629 |
| chr7.3 | mRNA | 1145167 | 1147675 | 1145167 | ID=MS.gene050629.t1;Parent=MS.gene050629 |
| chr7.3 | exon | 1145167 | 1145244 | 1145167 | ID=MS.gene050629.t1.exon1;Parent=MS.gene050629.t1 |
| chr7.3 | CDS | 1145167 | 1145244 | 1145167 | ID=cds.MS.gene050629.t1;Parent=MS.gene050629.t1 |
| chr7.3 | exon | 1145317 | 1145407 | 1145317 | ID=MS.gene050629.t1.exon2;Parent=MS.gene050629.t1 |
| chr7.3 | CDS | 1145317 | 1145407 | 1145317 | ID=cds.MS.gene050629.t1;Parent=MS.gene050629.t1 |
| chr7.3 | exon | 1145487 | 1145619 | 1145487 | ID=MS.gene050629.t1.exon3;Parent=MS.gene050629.t1 |
| chr7.3 | CDS | 1145487 | 1145619 | 1145487 | ID=cds.MS.gene050629.t1;Parent=MS.gene050629.t1 |
| chr7.3 | exon | 1145700 | 1145769 | 1145700 | ID=MS.gene050629.t1.exon4;Parent=MS.gene050629.t1 |
| chr7.3 | CDS | 1145700 | 1145769 | 1145700 | ID=cds.MS.gene050629.t1;Parent=MS.gene050629.t1 |
| chr7.3 | exon | 1147423 | 1147483 | 1147423 | ID=MS.gene050629.t1.exon5;Parent=MS.gene050629.t1 |
| chr7.3 | CDS | 1147423 | 1147483 | 1147423 | ID=cds.MS.gene050629.t1;Parent=MS.gene050629.t1 |
| chr7.3 | exon | 1147584 | 1147675 | 1147584 | ID=MS.gene050629.t1.exon6;Parent=MS.gene050629.t1 |
| chr7.3 | CDS | 1147584 | 1147675 | 1147584 | ID=cds.MS.gene050629.t1;Parent=MS.gene050629.t1 |
| Gene Sequence |
| Protein sequence |
