AlfalfaGEDB | MS.gene050629

M. sativa cultivar XinJiangDaYe / MS.gene050629

KEGG: K17972
GO: GO:0003674 GO:0003824 GO:0008080 GO:0016407 GO:0016410 GO:0016740 GO:0016746 GO:0016747
PFAM: PF00583.28

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050629.t1	XP_003626547.1	98.9	174	2	0	1	174	1	174	1.20E-95	359

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050629.t1	Q8LGI8	92.5	174	13	0	1	174	1	174	6.5e-93	341.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050629.t1	G7L415	98.9	174	2	0	1	174	1	174	9.0e-96	359.0

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene050629.t1	TR	GNAT

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene04915	MS.gene050629	-0.80726	5.51E-50	-1.69E-46
MS.gene04917	MS.gene050629	-0.804753	1.86E-49	-1.69E-46
MS.gene049178	MS.gene050629	-0.806666	7.36E-50	-1.69E-46
MS.gene049382	MS.gene050629	-0.800324	1.52E-48	-1.69E-46
MS.gene050629	MS.gene050762	-0.847916	8.54E-60	-1.69E-46
MS.gene050629	MS.gene050763	-0.848395	6.30E-60	-1.69E-46
MS.gene050629	MS.gene054379	-0.853637	2.09E-61	-1.69E-46
MS.gene050629	MS.gene056522	0.819228	1.30E-52	-1.69E-46
MS.gene050629	MS.gene05761	-0.82784	1.25E-54	-1.69E-46
MS.gene050629	MS.gene057721	-0.805321	1.41E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene050629	MS.gene51964	PPI
MS.gene050629	MS.gene019081	PPI
MS.gene050629	MS.gene009509	PPI
MS.gene050629	MS.gene92650	PPI
MS.gene050629	MS.gene51967	PPI
MS.gene51687	MS.gene050629	PPI
MS.gene63427	MS.gene050629	PPI
MS.gene95934	MS.gene050629	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050629.t1	MTR_7g117040	98.851	174	2	0	1	174	1	174	3.23e-131	364
MS.gene050629.t1	MTR_7g117040	96.552	174	2	1	1	174	1	170	1.18e-125	350
MS.gene050629.t1	MTR_7g117040	94.253	174	3	1	1	174	1	167	4.40e-122	341
MS.gene050629.t1	MTR_3g034200	35.762	151	96	1	1	150	1	151	3.41e-28	103
MS.gene050629.t1	MTR_3g030055	27.679	112	76	2	39	150	42	148	3.84e-11	58.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050629.t1	AT1G03150	92.529	174	13	0	1	174	1	174	1.68e-124	347
MS.gene050629.t1	AT5G13780	36.424	151	95	1	1	150	1	151	1.24e-27	102

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Find 44 sgRNAs with CRISPR-Local

Find 158 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCCATGATATGGTTACCG+GGG	0.702997	7.3:-1145382	None:intergenic
AATAGTCGGGCCATCGTGCT+AGG	0.528873	7.3:-1145343	None:intergenic
AATTGTTGCCTGCGATACTC+GGG	0.536449	7.3:-1145552	None:intergenic
ACATGACCTACCTAGCACGA+TGG	0.757874	7.3:+1145333	MS.gene050629:CDS
ACTTACTGTAACCCATGATA+TGG	0.371450	7.3:-1145391	None:intergenic
AGCCATCAAAATGTATGAAA+AGG	0.478370	7.3:+1145748	MS.gene050629:CDS
AGGCCCCGGTAACCATATCA+TGG	0.483412	7.3:+1145379	MS.gene050629:CDS
AGGTCGTTTAAGAGGGATGA+CGG	0.617126	7.3:-1147623	None:intergenic
AGTGCTACGCTATTATTCTG+GGG	0.705031	7.3:+1147446	MS.gene050629:CDS
ATGGGTAAAGTTGAGGGGCA+AGG	0.534565	7.3:+1145489	MS.gene050629:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATAGAGTTCTTTCATGG+TGG	-	chr7.3:1146046-1146065	None:intergenic	30.0%
ACAAACAACATTAAGAACGA+AGG	-	chr7.3:1145292-1145311	None:intergenic	30.0%
ACATACAGAATCATCAAGTA+GGG	+	chr7.3:1145824-1145843	MS.gene050629:intron	30.0%
AGCCATCAAAATGTATGAAA+AGG	+	chr7.3:1145748-1145767	MS.gene050629:CDS	30.0%
ATAATCGAGAGAGAAAAAAG+GGG	-	chr7.3:1145429-1145448	None:intergenic	30.0%
ATGCCTTCTGTTTAAAAACT+TGG	+	chr7.3:1146230-1146249	MS.gene050629:intron	30.0%
CACTTAATGACTTTCTCAAT+GGG	-	chr7.3:1146357-1146376	None:intergenic	30.0%
GAAATATTGTCTCAATGGAT+TGG	+	chr7.3:1146962-1146981	MS.gene050629:intron	30.0%
GAGATGAAATATTGTCTCAA+TGG	+	chr7.3:1146957-1146976	MS.gene050629:intron	30.0%
GTATTATTATCCAACTGATG+TGG	-	chr7.3:1147162-1147181	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.3	gene	1145167	1147675	1145167	ID=MS.gene050629
chr7.3	mRNA	1145167	1147675	1145167	ID=MS.gene050629.t1;Parent=MS.gene050629
chr7.3	exon	1145167	1145244	1145167	ID=MS.gene050629.t1.exon1;Parent=MS.gene050629.t1
chr7.3	CDS	1145167	1145244	1145167	ID=cds.MS.gene050629.t1;Parent=MS.gene050629.t1
chr7.3	exon	1145317	1145407	1145317	ID=MS.gene050629.t1.exon2;Parent=MS.gene050629.t1
chr7.3	CDS	1145317	1145407	1145317	ID=cds.MS.gene050629.t1;Parent=MS.gene050629.t1
chr7.3	exon	1145487	1145619	1145487	ID=MS.gene050629.t1.exon3;Parent=MS.gene050629.t1
chr7.3	CDS	1145487	1145619	1145487	ID=cds.MS.gene050629.t1;Parent=MS.gene050629.t1
chr7.3	exon	1145700	1145769	1145700	ID=MS.gene050629.t1.exon4;Parent=MS.gene050629.t1
chr7.3	CDS	1145700	1145769	1145700	ID=cds.MS.gene050629.t1;Parent=MS.gene050629.t1
chr7.3	exon	1147423	1147483	1147423	ID=MS.gene050629.t1.exon5;Parent=MS.gene050629.t1
chr7.3	CDS	1147423	1147483	1147423	ID=cds.MS.gene050629.t1;Parent=MS.gene050629.t1
chr7.3	exon	1147584	1147675	1147584	ID=MS.gene050629.t1.exon6;Parent=MS.gene050629.t1
chr7.3	CDS	1147584	1147675	1147584	ID=cds.MS.gene050629.t1;Parent=MS.gene050629.t1

Gene Sequence

>MS.gene050629

ATGACAACAATACGTAGGTTTTGCTGCAACGACCTTCTTCGTTTTACAAATGTCAATCTTGACCATCTCACTGAAACTGTATGTAACTACCGTTTCTCAACTCAATGGTATTTCACTTTATGCCTTCGTTCTTAATGTTGTTTGTTTCAGTTTAACATGTCCTTCTACATGACCTACCTAGCACGATGGCCCGACTATTTCCACCTCGCCCAAGGCCCCGGTAACCATATCATGGGTTACAGTAAGTATTCTTTCTTTCCCCCTTTTTTCTCTCTCGATTATATCATGTCATAATCAATTATATCATTAATGTAATGTAGTTATGGGTAAAGTTGAGGGGCAAGGAGAATCTTGGCATGGTCATGTTACTGCAGTAACTGTTGCTCCCGAGTATCGCAGGCAACAATTAGCCAAGAAACTAATGAATCTTCTCGAAGACATCAGTGACAACATGTAAGCCTTGCATATCTTTCTTTCATTTTTAATCTTTTAGAATTGGAGGTCTTGATATAAGTTATAATTGGATTTTGCAGTGACAAAGCCTATTTTGTTGATCTATTTGTGAGAGCATCAAATGCACCAGCCATCAAAATGTATGAAAAGGTAATCATTCTCTACTTTTCATTTCAGATTCTGTCAGAAAGGTTTCTTAGTTAGACATACAGAATCATCAAGTAGGGGGATTCCTCATCTTCATGCTAATTCTTATTATCAATAAAACAATACCAGTTAGAGAAGAAAAAAGGTATAGACATGTAGTTTCAACACTCAGCAAATAAGCACAGTTATCTCGATTGCATTGAGAGGAATCTCAATCAAACGGGTTGTAGTGTTCTACTTCATGGCTTCATGTGCCGTTCCCTGTGATGTTACCCTCCACCATGAAAGAACTCTATTTTCAATATCCAAGCTAACATGTTGAAAAATCATAAGTGGTTTTGCTAGAGTTTCCACAAAATCTAACTTCTCATTAGACTATGAGTGCATCAAATGAGAACTGCCACCACCATCTTGGAGTATGGTAGCTGCAGCATAGTAGAGAAGTTAAAGCAATTAATCATAGATGCCTTCTGTTTAAAAACTTGGGTAGGATATCTATCCCAATTTATTTCACTTTTTAGCTTATTTCTGCTGGCCATTTTGTGTACATTATACAACACAATACAACAACAACAACCAAGCCTTATCCCATTGAGAAAGTCATTAAGTGCATAACCACAAACAAAGCCTTGTCCTACGGTGTTTTTTAGATAACATCTATAGCTGATTATAGATAACATCGACAGCCTTTTACCCTCTTATTAGTGCTTTTACAATTTTTCTTCACACGCCTAAGTTGAGACTCTGCCCTCTTTTCCATATTATGTTTCTATGTACTGCCTAACTATGTCCCCAATGCTTTCATTCATATCTCACTTTGTCTTTTGTGTTCACTCATTCATCATAACATTCTCATCTCTGCTATTTAAGCTTACTTTCTGGCTATGTAAATATTTTAAGTAAATAAATAATCTAAATATAATATAAATTTGAATACAACTGCGACCCCACTTAGTCAGATAAGGCTTGATGGTTGACTGATGAATTTGAATACAACTGTACCTAACAAAATCTGAATATGAAATACTAATTATATAAAAAAATAAAGAAACTTTACAAATAGCATCAAATGGCACAATAGTCGTGTTTTATGCTTTGAACCTATTAAACATAGGTTTGATTTTTTTAAAAAAAATTTACCTTCACTTTTCACAAGAAGTCGGTATATAATTTGTCATAAAACGTCTATTGAGATGAAATATTGTCTCAATGGATTGGGAGTCTTGCAATCGTCAAACTTAGCCGTTTTAACTTATAAAGTTGTAATTGGTTCAGGTGATTTGGCTAGTTCATGCGTAATCTGGAATTGCAAGCTGGTTTGGTCTGATTTTGCAAACAACGGACAAAACAAAATTTTCAGATTGTGGTTTTTTGGTTCTTCATTACTTTGTCCCACATCAGTTGGATAATAATACAATTAAATTAAGGGCATGCTATTTATAATAAAATTCATAATCATAAATAGCATGCCCTTAATTTAATTGTATTATTAAATTAAGGGCATGCTATTTATGATTATGAATTTTATTATATATTAAAATATAATGTCATTGTAAATTGAATGTTGGATTAGGATATGTTTTCTTCATTAGATTAGGATTTTTTGAGTCTAAAGCCTGAATTGCTAACTAATTCTTTTCCTATTTGACATCTTAGCTTGGCTATGTGATTTATCGACGAGTGCTACGCTATTATTCTGGGGAAGAAGATGGATTGGGTATGGTTCCATGTTTTTGTTTTTACTTCATCTCTTATTCTCTTTAAACAAAAGTCTGTGTCACTATTTATTGGTTCTCATTTTTACCCTTTATTTTCAGATATGAGAAAGGCATTATCTCGTGATATTGATAAGAAGTCCGTCATCCCTCTTAAACGACCTGTCACTCCTGATGAGTTAGAGTACGACTAA

Protein sequence

>MS.gene050629.t1

MTTIRRFCCNDLLRFTNVNLDHLTETFNMSFYMTYLARWPDYFHLAQGPGNHIMGYIMGKVEGQGESWHGHVTAVTVAPEYRRQQLAKKLMNLLEDISDNIDKAYFVDLFVRASNAPAIKMYEKLGYVIYRRVLRYYSGEEDGLDMRKALSRDIDKKSVIPLKRPVTPDELEYD