Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065473.t1 | GAU32770.1 | 94.5 | 439 | 24 | 0 | 1 | 439 | 1 | 439 | 3.10E-159 | 571.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065473.t1 | P48724 | 77.9 | 444 | 92 | 2 | 1 | 439 | 1 | 443 | 7.3e-133 | 475.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065473.t1 | A0A2Z6N935 | 94.5 | 439 | 24 | 0 | 1 | 439 | 1 | 439 | 2.2e-159 | 571.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049386 | MS.gene065473 | 0.838625 | 2.57E-57 | -1.69E-46 |
| MS.gene059339 | MS.gene065473 | 0.839572 | 1.46E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065473.t1 | MTR_7g082940 | 99.544 | 439 | 2 | 0 | 1 | 439 | 1 | 439 | 0.0 | 897 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065473.t1 | AT1G36730 | 65.708 | 452 | 129 | 9 | 1 | 439 | 1 | 439 | 0.0 | 528 |
| MS.gene065473.t1 | AT1G77840 | 62.700 | 437 | 150 | 7 | 1 | 432 | 1 | 429 | 2.60e-178 | 505 |
Find 106 sgRNAs with CRISPR-Local
Find 114 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGGAACCCTTCTTACTTTC+TGG | 0.085543 | 7.3:+24989945 | None:intergenic |
| CCTCATGGCCTTCTTGTCTT+TGG | 0.144391 | 7.3:+24989926 | None:intergenic |
| GTAATTATGATCTCAGTTTC+AGG | 0.202194 | 7.3:+24990065 | None:intergenic |
| GTTACCTCTGCCCTCAATTT+TGG | 0.221238 | 7.3:+24990310 | None:intergenic |
| CTTCCAAATCTGAGCATTCT+TGG | 0.232216 | 7.3:+24989146 | None:intergenic |
| CTTTCTCAATGTCACCAAAT+AGG | 0.248803 | 7.3:+24989394 | None:intergenic |
| TCAAAATTTGATGAGAAAAC+TGG | 0.270680 | 7.3:-24990185 | MS.gene065473:CDS |
| TCACAGCACTTAACTGTTCT+TGG | 0.271875 | 7.3:+24989646 | None:intergenic |
| TCTTACACAACCAAGTATTT+TGG | 0.279419 | 7.3:-24990227 | MS.gene065473:CDS |
| TTTCTCAATGTCACCAAATA+GGG | 0.300713 | 7.3:+24989395 | None:intergenic |
| CCAATGGGCCACCAATTCTT+TGG | 0.325790 | 7.3:+24989467 | None:intergenic |
| GCTCTGTATGAAGCCCTATT+TGG | 0.335834 | 7.3:-24989408 | MS.gene065473:CDS |
| TGCATTGGAAGTGGACTTGC+AGG | 0.378924 | 7.3:+24989269 | None:intergenic |
| CACTGGAGGCTGCTCGGTTA+AGG | 0.386039 | 7.3:-24989671 | MS.gene065473:CDS |
| CATGATACTGCAAAACTTGC+TGG | 0.387966 | 7.3:-24990140 | MS.gene065473:CDS |
| GGTTGATATTGCAAAAGCTT+TGG | 0.398821 | 7.3:-24990261 | MS.gene065473:CDS |
| AAAATACTTGGTTGTGTAAG+AGG | 0.402145 | 7.3:+24990229 | None:intergenic |
| AAGAAATACGTCCAGTGTTA+TGG | 0.403203 | 7.3:-24990098 | MS.gene065473:CDS |
| ACACCAAGAATGCTCAGATT+TGG | 0.404122 | 7.3:-24989149 | MS.gene065473:CDS |
| CAAAGAATTGGTGGCCCATT+GGG | 0.405782 | 7.3:-24989466 | MS.gene065473:CDS |
| GCTGCTTTCTCCTCCTTCTC+AGG | 0.406400 | 7.3:+24989591 | None:intergenic |
| AAGTGCTGTGACAGCTGATA+TGG | 0.429318 | 7.3:-24989634 | MS.gene065473:CDS |
| CACAAGCAGCACATTTCATC+TGG | 0.435084 | 7.3:+24990027 | None:intergenic |
| GTAAGTGACAATCCTGCTAA+TGG | 0.439980 | 7.3:-24989561 | MS.gene065473:CDS |
| AGGCATCTTGTACCTGTAGA+AGG | 0.441993 | 7.3:+24990343 | None:intergenic |
| TTCCTTGAGTGCATTGGAAG+TGG | 0.443895 | 7.3:+24989260 | None:intergenic |
| CCAAAGAATTGGTGGCCCAT+TGG | 0.450316 | 7.3:-24989467 | MS.gene065473:CDS |
| GAGTTACCATTACCATTAGC+AGG | 0.455049 | 7.3:+24989549 | None:intergenic |
| CTATTTGGTGACATTGAGAA+AGG | 0.458675 | 7.3:-24989393 | MS.gene065473:CDS |
| AACCCTTCTTACTTTCTGGT+GGG | 0.458969 | 7.3:+24989949 | None:intergenic |
| TGAACTACAAAACTCTAGTC+GGG | 0.460855 | 7.3:-24989524 | MS.gene065473:CDS |
| CTCCTTCTCAGGTTCAGTTG+TGG | 0.464133 | 7.3:+24989602 | None:intergenic |
| AGGTGCTTCGGCCAAAGAAT+TGG | 0.467578 | 7.3:-24989478 | MS.gene065473:CDS |
| ATCAAAGCTGATTTGAAGAA+AGG | 0.469806 | 7.3:-24989498 | MS.gene065473:CDS |
| TGCTGCAGTTGCTGTGGAAG+AGG | 0.472780 | 7.3:-24989331 | MS.gene065473:CDS |
| CTCCTTCTCAGCTCTCCTCA+TGG | 0.475103 | 7.3:+24989911 | None:intergenic |
| GACAATCCTGCTAATGGTAA+TGG | 0.475544 | 7.3:-24989555 | MS.gene065473:CDS |
| GAACCCTTCTTACTTTCTGG+TGG | 0.476202 | 7.3:+24989948 | None:intergenic |
| GGCAACTTCCTTGAGTGCAT+TGG | 0.476761 | 7.3:+24989254 | None:intergenic |
| CATAGAGTGCCTTCAGAACC+AGG | 0.478477 | 7.3:+24989232 | None:intergenic |
| GACAGGAAGTGATGCCCAAT+GGG | 0.489468 | 7.3:+24989452 | None:intergenic |
| AAGTTCACAGCCAAAATACT+TGG | 0.489621 | 7.3:+24990217 | None:intergenic |
| GAAAGAGGCTGTCAAGAAGA+AGG | 0.489680 | 7.3:-24989841 | MS.gene065473:CDS |
| GGAGGAGAAAGCAGCCGCTA+AGG | 0.495057 | 7.3:-24989583 | MS.gene065473:CDS |
| TAGAATGATTACCAAAATTG+AGG | 0.497188 | 7.3:-24990321 | MS.gene065473:CDS |
| TGATTTGAAGAAAGGTGCTT+CGG | 0.497478 | 7.3:-24989490 | MS.gene065473:CDS |
| ACTGGGACTTCTCATGTTAA+CGG | 0.498264 | 7.3:-24990167 | MS.gene065473:CDS |
| GGCCATGAGGAGAGCTGAGA+AGG | 0.498883 | 7.3:-24989913 | MS.gene065473:CDS |
| TCTTGATGAAGTTCTCAAGA+AGG | 0.510016 | 7.3:+24990117 | None:intergenic |
| ACTCTGAAGCCACTCAATGA+AGG | 0.510974 | 7.3:+24989113 | None:intergenic |
| AGAATGATTACCAAAATTGA+GGG | 0.514225 | 7.3:-24990320 | MS.gene065473:CDS |
| TACTTGGTTGTGTAAGAGGC+TGG | 0.516559 | 7.3:+24990233 | None:intergenic |
| CAAAATTTGATGAGAAAACT+GGG | 0.516890 | 7.3:-24990184 | MS.gene065473:CDS |
| AAAATTGAGGGCAGAGGTAA+CGG | 0.522867 | 7.3:-24990308 | MS.gene065473:CDS |
| TGCACTCAAGGAAGTTGCCC+TGG | 0.525278 | 7.3:-24989250 | MS.gene065473:CDS |
| CCTTGCTGCTGCAGTTGCTG+TGG | 0.525923 | 7.3:-24989337 | MS.gene065473:CDS |
| TACGTCCAGTGTTATGGTTG+TGG | 0.528903 | 7.3:-24990092 | MS.gene065473:CDS |
| GCTGTTGCTGCGTGCAATTG+AGG | 0.530161 | 7.3:-24989298 | MS.gene065473:CDS |
| GTCCACTTCCAATGCACTCA+AGG | 0.535542 | 7.3:-24989262 | MS.gene065473:CDS |
| GGAAGTTGCCCTGGTTCTGA+AGG | 0.538809 | 7.3:-24989241 | MS.gene065473:CDS |
| GAACCCACCAGAAAGTAAGA+AGG | 0.542111 | 7.3:-24989952 | MS.gene065473:CDS |
| ACAGCGATGATGCCTTCTAC+AGG | 0.542158 | 7.3:-24990355 | MS.gene065473:CDS |
| CTCTGAAGCCACTCAATGAA+GGG | 0.544644 | 7.3:+24989114 | None:intergenic |
| TGCTTCGGCCAAAGAATTGG+TGG | 0.545928 | 7.3:-24989475 | MS.gene065473:CDS |
| GCTGCAGTTGCTGTGGAAGA+GGG | 0.548653 | 7.3:-24989330 | MS.gene065473:CDS |
| CTCCACAACTGAACCTGAGA+AGG | 0.551846 | 7.3:-24989604 | MS.gene065473:CDS |
| TGTCAAGAAGAAGGGAGCTA+AGG | 0.553508 | 7.3:-24989832 | MS.gene065473:CDS |
| ATGAACTACAAAACTCTAGT+CGG | 0.554432 | 7.3:-24989525 | MS.gene065473:CDS |
| GCGCTACAGAACATTGGTGC+TGG | 0.561917 | 7.3:-24990380 | MS.gene065473:CDS |
| TATTTGGTGACATTGAGAAA+GGG | 0.563328 | 7.3:-24989392 | MS.gene065473:CDS |
| GAGTGCAGAGTCAGAGTCCG+AGG | 0.563653 | 7.3:-24989094 | MS.gene065473:CDS |
| AATTGCACGCAGCAACAGCA+AGG | 0.564949 | 7.3:+24989302 | None:intergenic |
| ACTCTATGATGCTGATGCGC+TGG | 0.568087 | 7.3:-24989217 | MS.gene065473:CDS |
| ATACATCACTGGAGGCTGCT+CGG | 0.570510 | 7.3:-24989677 | MS.gene065473:CDS |
| ATGTGAAACCCTTCATTGAG+TGG | 0.570936 | 7.3:-24989122 | MS.gene065473:CDS |
| AGGATTGTCACTTACCTTAG+CGG | 0.576783 | 7.3:+24989569 | None:intergenic |
| TCGAAGTCAAGTTGATGAGA+AGG | 0.577041 | 7.3:-24989739 | MS.gene065473:CDS |
| AGACAGGAAGTGATGCCCAA+TGG | 0.578154 | 7.3:+24989451 | None:intergenic |
| TGGTATCAAGAAGGGCTGAA+AGG | 0.585394 | 7.3:-24989174 | MS.gene065473:CDS |
| TCATCAACTTGACTTCGAGT+AGG | 0.585932 | 7.3:+24989744 | None:intergenic |
| AAAGAGGCTGTCAAGAAGAA+GGG | 0.588018 | 7.3:-24989840 | MS.gene065473:CDS |
| GAAGGGTTCCAAAGACAAGA+AGG | 0.588354 | 7.3:-24989934 | MS.gene065473:CDS |
| ATTACCAAAATTGAGGGCAG+AGG | 0.589733 | 7.3:-24990314 | MS.gene065473:CDS |
| ATATTGCAAAAGCTTTGGCA+AGG | 0.590765 | 7.3:-24990256 | MS.gene065473:CDS |
| CACAACTGAACCTGAGAAGG+AGG | 0.594831 | 7.3:-24989601 | MS.gene065473:CDS |
| AACCCACCAGAAAGTAAGAA+GGG | 0.595225 | 7.3:-24989951 | MS.gene065473:CDS |
| TCAAGTTGATGAGAAGGATG+AGG | 0.595268 | 7.3:-24989733 | MS.gene065473:CDS |
| CAGATGAAATGTGCTGCTTG+TGG | 0.595832 | 7.3:-24990026 | MS.gene065473:CDS |
| TATTGCAGTGGTATCAAGAA+GGG | 0.597919 | 7.3:-24989182 | MS.gene065473:CDS |
| CTATGATGCTGATGCGCTGG+AGG | 0.599591 | 7.3:-24989214 | MS.gene065473:CDS |
| CAAAACGAATATTGTCAACA+TGG | 0.605759 | 7.3:-24990282 | MS.gene065473:CDS |
| GCGGACACACTATTCTTCCT+CGG | 0.609414 | 7.3:+24989077 | None:intergenic |
| ATATTGCAGTGGTATCAAGA+AGG | 0.611168 | 7.3:-24989183 | MS.gene065473:CDS |
| GAGAAGGAGAGACTGAAGGA+AGG | 0.615946 | 7.3:-24989897 | MS.gene065473:CDS |
| ATCATGGCGCTACAGAACAT+TGG | 0.617816 | 7.3:-24990386 | MS.gene065473:CDS |
| ATGGCAAACAGATACATCAC+TGG | 0.618378 | 7.3:-24989688 | MS.gene065473:CDS |
| GATTTCCACAACCATAACAC+TGG | 0.620449 | 7.3:+24990087 | None:intergenic |
| AAGATGAAGATGACGTACAA+TGG | 0.630302 | 7.3:-24989707 | MS.gene065473:CDS |
| AGCTGAGAAGGAGAGACTGA+AGG | 0.631900 | 7.3:-24989901 | MS.gene065473:CDS |
| ATTGCACGCAGCAACAGCAA+GGG | 0.634086 | 7.3:+24989303 | None:intergenic |
| CCACAGCAACTGCAGCAGCA+AGG | 0.636707 | 7.3:+24989337 | None:intergenic |
| GAACTACAAAACTCTAGTCG+GGG | 0.640862 | 7.3:-24989523 | MS.gene065473:CDS |
| GCAAACAGATACATCACTGG+AGG | 0.687094 | 7.3:-24989685 | MS.gene065473:CDS |
| AGGAAGAGCACATATTGCAG+TGG | 0.689599 | 7.3:-24989194 | MS.gene065473:CDS |
| CCAAAGACAAGAAGGCCATG+AGG | 0.693166 | 7.3:-24989926 | MS.gene065473:CDS |
| ATAGAGTGCCTTCAGAACCA+GGG | 0.695712 | 7.3:+24989233 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AGAATGATTACCAAAATTGA+GGG | - | chr7.3:24989149-24989168 | MS.gene065473:CDS | 25.0% |
| ! | CAAAATTTGATGAGAAAACT+GGG | - | chr7.3:24989285-24989304 | MS.gene065473:CDS | 25.0% |
| ! | TAGAATGATTACCAAAATTG+AGG | - | chr7.3:24989148-24989167 | MS.gene065473:CDS | 25.0% |
| ! | TCAAAATTTGATGAGAAAAC+TGG | - | chr7.3:24989284-24989303 | MS.gene065473:CDS | 25.0% |
| !!! | TCAATTTTGGTAATCATTCT+AGG | + | chr7.3:24989149-24989168 | None:intergenic | 25.0% |
| AAAATACTTGGTTGTGTAAG+AGG | + | chr7.3:24989243-24989262 | None:intergenic | 30.0% | |
| ATGAACTACAAAACTCTAGT+CGG | - | chr7.3:24989944-24989963 | MS.gene065473:CDS | 30.0% | |
| CAAAACGAATATTGTCAACA+TGG | - | chr7.3:24989187-24989206 | MS.gene065473:CDS | 30.0% | |
| GTAATTATGATCTCAGTTTC+AGG | + | chr7.3:24989407-24989426 | None:intergenic | 30.0% | |
| TCTTCAAGGAAAAAAGGAAA+TGG | - | chr7.3:24989680-24989699 | MS.gene065473:CDS | 30.0% | |
| TTTCTCAATGTCACCAAATA+GGG | + | chr7.3:24990077-24990096 | None:intergenic | 30.0% | |
| ! | TATTTGGTGACATTGAGAAA+GGG | - | chr7.3:24990077-24990096 | MS.gene065473:CDS | 30.0% |
| ! | TCTTACACAACCAAGTATTT+TGG | - | chr7.3:24989242-24989261 | MS.gene065473:CDS | 30.0% |
| !! | ATCAAAGCTGATTTGAAGAA+AGG | - | chr7.3:24989971-24989990 | MS.gene065473:CDS | 30.0% |
| AAGAAATACGTCCAGTGTTA+TGG | - | chr7.3:24989371-24989390 | MS.gene065473:CDS | 35.0% | |
| AAGATGAAGATGACGTACAA+TGG | - | chr7.3:24989762-24989781 | MS.gene065473:CDS | 35.0% | |
| AAGTTCACAGCCAAAATACT+TGG | + | chr7.3:24989255-24989274 | None:intergenic | 35.0% | |
| ACAAGCTCTTCAAGGAAAAA+AGG | - | chr7.3:24989674-24989693 | MS.gene065473:CDS | 35.0% | |
| ATATTGCAGTGGTATCAAGA+AGG | - | chr7.3:24990286-24990305 | MS.gene065473:CDS | 35.0% | |
| CTTTCTCAATGTCACCAAAT+AGG | + | chr7.3:24990078-24990097 | None:intergenic | 35.0% | |
| TATTGCAGTGGTATCAAGAA+GGG | - | chr7.3:24990287-24990306 | MS.gene065473:CDS | 35.0% | |
| TCTTGATGAAGTTCTCAAGA+AGG | + | chr7.3:24989355-24989374 | None:intergenic | 35.0% | |
| TGAACTACAAAACTCTAGTC+GGG | - | chr7.3:24989945-24989964 | MS.gene065473:CDS | 35.0% | |
| ! | ATATTGCAAAAGCTTTGGCA+AGG | - | chr7.3:24989213-24989232 | MS.gene065473:CDS | 35.0% |
| ! | CTATTTGGTGACATTGAGAA+AGG | - | chr7.3:24990076-24990095 | MS.gene065473:CDS | 35.0% |
| ! | GGTTGATATTGCAAAAGCTT+TGG | - | chr7.3:24989208-24989227 | MS.gene065473:CDS | 35.0% |
| !! | GACTAGAGTTTTGTAGTTCA+TGG | + | chr7.3:24989945-24989964 | None:intergenic | 35.0% |
| !! | TGATTTGAAGAAAGGTGCTT+CGG | - | chr7.3:24989979-24989998 | MS.gene065473:CDS | 35.0% |
| !!! | AAGTATTTTGGCTGTGAACT+TGG | - | chr7.3:24989254-24989273 | MS.gene065473:CDS | 35.0% |
| AAAATTGAGGGCAGAGGTAA+CGG | - | chr7.3:24989161-24989180 | MS.gene065473:CDS | 40.0% | |
| AAAGAGGCTGTCAAGAAGAA+GGG | - | chr7.3:24989629-24989648 | MS.gene065473:CDS | 40.0% | |
| AACCCACCAGAAAGTAAGAA+GGG | - | chr7.3:24989518-24989537 | MS.gene065473:CDS | 40.0% | |
| ACACCAAGAATGCTCAGATT+TGG | - | chr7.3:24990320-24990339 | MS.gene065473:CDS | 40.0% | |
| ACTGGGACTTCTCATGTTAA+CGG | - | chr7.3:24989302-24989321 | MS.gene065473:CDS | 40.0% | |
| ATGGCAAACAGATACATCAC+TGG | - | chr7.3:24989781-24989800 | MS.gene065473:CDS | 40.0% | |
| ATGTGAAACCCTTCATTGAG+TGG | - | chr7.3:24990347-24990366 | MS.gene065473:CDS | 40.0% | |
| ATTACCAAAATTGAGGGCAG+AGG | - | chr7.3:24989155-24989174 | MS.gene065473:CDS | 40.0% | |
| CATGATACTGCAAAACTTGC+TGG | - | chr7.3:24989329-24989348 | MS.gene065473:CDS | 40.0% | |
| CTGCAAAAACAAGCTCTTCA+AGG | - | chr7.3:24989666-24989685 | MS.gene065473:CDS | 40.0% | |
| CTTCCAAATCTGAGCATTCT+TGG | + | chr7.3:24990326-24990345 | None:intergenic | 40.0% | |
| GAACTACAAAACTCTAGTCG+GGG | - | chr7.3:24989946-24989965 | MS.gene065473:CDS | 40.0% | |
| GACAATCCTGCTAATGGTAA+TGG | - | chr7.3:24989914-24989933 | MS.gene065473:CDS | 40.0% | |
| GAGTTACCATTACCATTAGC+AGG | + | chr7.3:24989923-24989942 | None:intergenic | 40.0% | |
| GATTTCCACAACCATAACAC+TGG | + | chr7.3:24989385-24989404 | None:intergenic | 40.0% | |
| GCTGAAAAAGCTGAAGAAAG+AGG | - | chr7.3:24989613-24989632 | MS.gene065473:CDS | 40.0% | |
| GTAAGTGACAATCCTGCTAA+TGG | - | chr7.3:24989908-24989927 | MS.gene065473:CDS | 40.0% | |
| TCACAGCACTTAACTGTTCT+TGG | + | chr7.3:24989826-24989845 | None:intergenic | 40.0% | |
| TCATCAACTTGACTTCGAGT+AGG | + | chr7.3:24989728-24989747 | None:intergenic | 40.0% | |
| TTGGAACCCTTCTTACTTTC+TGG | + | chr7.3:24989527-24989546 | None:intergenic | 40.0% | |
| ! | AACCCTTCTTACTTTCTGGT+GGG | + | chr7.3:24989523-24989542 | None:intergenic | 40.0% |
| ! | AGGATTGTCACTTACCTTAG+CGG | + | chr7.3:24989903-24989922 | None:intergenic | 40.0% |
| ! | ATCTTTTCTTGTGGAGAGAC+AGG | + | chr7.3:24990037-24990056 | None:intergenic | 40.0% |
| !! | AGAGCACTCATCTTTTCTTG+TGG | + | chr7.3:24990046-24990065 | None:intergenic | 40.0% |
| !! | TCAAGTTGATGAGAAGGATG+AGG | - | chr7.3:24989736-24989755 | MS.gene065473:CDS | 40.0% |
| !! | TCGAAGTCAAGTTGATGAGA+AGG | - | chr7.3:24989730-24989749 | MS.gene065473:CDS | 40.0% |
| AGGCATCTTGTACCTGTAGA+AGG | + | chr7.3:24989129-24989148 | None:intergenic | 45.0% | |
| CACAAGCAGCACATTTCATC+TGG | + | chr7.3:24989445-24989464 | None:intergenic | 45.0% | |
| GAAAGAGGCTGTCAAGAAGA+AGG | - | chr7.3:24989628-24989647 | MS.gene065473:CDS | 45.0% | |
| GAACCCACCAGAAAGTAAGA+AGG | - | chr7.3:24989517-24989536 | MS.gene065473:CDS | 45.0% | |
| GAACCCTTCTTACTTTCTGG+TGG | + | chr7.3:24989524-24989543 | None:intergenic | 45.0% | |
| GAAGGGTTCCAAAGACAAGA+AGG | - | chr7.3:24989535-24989554 | MS.gene065473:CDS | 45.0% | |
| GCAAACAGATACATCACTGG+AGG | - | chr7.3:24989784-24989803 | MS.gene065473:CDS | 45.0% | |
| GCTCTGTATGAAGCCCTATT+TGG | - | chr7.3:24990061-24990080 | MS.gene065473:CDS | 45.0% | |
| TACGTCCAGTGTTATGGTTG+TGG | - | chr7.3:24989377-24989396 | MS.gene065473:CDS | 45.0% | |
| TACTTGGTTGTGTAAGAGGC+TGG | + | chr7.3:24989239-24989258 | None:intergenic | 45.0% | |
| TGGTATCAAGAAGGGCTGAA+AGG | - | chr7.3:24990295-24990314 | MS.gene065473:CDS | 45.0% | |
| TGTCAAGAAGAAGGGAGCTA+AGG | - | chr7.3:24989637-24989656 | MS.gene065473:CDS | 45.0% | |
| TTCCTTGAGTGCATTGGAAG+TGG | + | chr7.3:24990212-24990231 | None:intergenic | 45.0% | |
| ! | AAGTGCTGTGACAGCTGATA+TGG | - | chr7.3:24989835-24989854 | MS.gene065473:CDS | 45.0% |
| ! | AGGAAGAGCACATATTGCAG+TGG | - | chr7.3:24990275-24990294 | MS.gene065473:CDS | 45.0% |
| ! | ATAGAGTGCCTTCAGAACCA+GGG | + | chr7.3:24990239-24990258 | None:intergenic | 45.0% |
| ! | CAAAGAATTGGTGGCCCATT+GGG | - | chr7.3:24990003-24990022 | MS.gene065473:CDS | 45.0% |
| ! | GTTACCTCTGCCCTCAATTT+TGG | + | chr7.3:24989162-24989181 | None:intergenic | 45.0% |
| !! | ACTCTGAAGCCACTCAATGA+AGG | + | chr7.3:24990359-24990378 | None:intergenic | 45.0% |
| !! | CAGATGAAATGTGCTGCTTG+TGG | - | chr7.3:24989443-24989462 | MS.gene065473:CDS | 45.0% |
| !! | CTCTGAAGCCACTCAATGAA+GGG | + | chr7.3:24990358-24990377 | None:intergenic | 45.0% |
| !!! | TTGTGGTTTTGTGTCTGACG+TGG | - | chr7.3:24989460-24989479 | MS.gene065473:CDS | 45.0% |
| AATTGCACGCAGCAACAGCA+AGG | + | chr7.3:24990170-24990189 | None:intergenic | 50.0% | |
| ACAGCGATGATGCCTTCTAC+AGG | - | chr7.3:24989114-24989133 | MS.gene065473:CDS | 50.0% | |
| ACTCTATGATGCTGATGCGC+TGG | - | chr7.3:24990252-24990271 | MS.gene065473:CDS | 50.0% | |
| AGACAGGAAGTGATGCCCAA+TGG | + | chr7.3:24990021-24990040 | None:intergenic | 50.0% | |
| AGCTGAGAAGGAGAGACTGA+AGG | - | chr7.3:24989568-24989587 | MS.gene065473:CDS | 50.0% | |
| AGGTGCTTCGGCCAAAGAAT+TGG | - | chr7.3:24989991-24990010 | MS.gene065473:CDS | 50.0% | |
| ATACATCACTGGAGGCTGCT+CGG | - | chr7.3:24989792-24989811 | MS.gene065473:CDS | 50.0% | |
| ATTGCACGCAGCAACAGCAA+GGG | + | chr7.3:24990169-24990188 | None:intergenic | 50.0% | |
| CACAACTGAACCTGAGAAGG+AGG | - | chr7.3:24989868-24989887 | MS.gene065473:CDS | 50.0% | |
| CCAAAGACAAGAAGGCCATG+AGG | - | chr7.3:24989543-24989562 | MS.gene065473:CDS | 50.0% | |
| CCAATGGGCCACCAATTCTT+TGG | + | chr7.3:24990005-24990024 | None:intergenic | 50.0% | |
| CCTCATGGCCTTCTTGTCTT+TGG | + | chr7.3:24989546-24989565 | None:intergenic | 50.0% | |
| CTCCACAACTGAACCTGAGA+AGG | - | chr7.3:24989865-24989884 | MS.gene065473:CDS | 50.0% | |
| CTCCTTCTCAGGTTCAGTTG+TGG | + | chr7.3:24989870-24989889 | None:intergenic | 50.0% | |
| GACAGGAAGTGATGCCCAAT+GGG | + | chr7.3:24990020-24990039 | None:intergenic | 50.0% | |
| GAGAAGGAGAGACTGAAGGA+AGG | - | chr7.3:24989572-24989591 | MS.gene065473:CDS | 50.0% | |
| GGCAACTTCCTTGAGTGCAT+TGG | + | chr7.3:24990218-24990237 | None:intergenic | 50.0% | |
| GTCCACTTCCAATGCACTCA+AGG | - | chr7.3:24990207-24990226 | MS.gene065473:CDS | 50.0% | |
| TGCTTCGGCCAAAGAATTGG+TGG | - | chr7.3:24989994-24990013 | MS.gene065473:CDS | 50.0% | |
| ! | CATAGAGTGCCTTCAGAACC+AGG | + | chr7.3:24990240-24990259 | None:intergenic | 50.0% |
| ! | CCAAAGAATTGGTGGCCCAT+TGG | - | chr7.3:24990002-24990021 | MS.gene065473:CDS | 50.0% |
| ! | TGCATTGGAAGTGGACTTGC+AGG | + | chr7.3:24990203-24990222 | None:intergenic | 50.0% |
| CTATGATGCTGATGCGCTGG+AGG | - | chr7.3:24990255-24990274 | MS.gene065473:CDS | 55.0% | |
| CTCCTTCTCAGCTCTCCTCA+TGG | + | chr7.3:24989561-24989580 | None:intergenic | 55.0% | |
| GCGCTACAGAACATTGGTGC+TGG | - | chr7.3:24989089-24989108 | MS.gene065473:CDS | 55.0% | |
| GCTGCAGTTGCTGTGGAAGA+GGG | - | chr7.3:24990139-24990158 | MS.gene065473:CDS | 55.0% | |
| GCTGTTGCTGCGTGCAATTG+AGG | - | chr7.3:24990171-24990190 | MS.gene065473:CDS | 55.0% | |
| TGCACTCAAGGAAGTTGCCC+TGG | - | chr7.3:24990219-24990238 | MS.gene065473:CDS | 55.0% | |
| TGCTGCAGTTGCTGTGGAAG+AGG | - | chr7.3:24990138-24990157 | MS.gene065473:CDS | 55.0% | |
| ! | GCTGCTTTCTCCTCCTTCTC+AGG | + | chr7.3:24989881-24989900 | None:intergenic | 55.0% |
| !! | GGAAGTTGCCCTGGTTCTGA+AGG | - | chr7.3:24990228-24990247 | MS.gene065473:CDS | 55.0% |
| CACTGGAGGCTGCTCGGTTA+AGG | - | chr7.3:24989798-24989817 | MS.gene065473:CDS | 60.0% | |
| CCACAGCAACTGCAGCAGCA+AGG | + | chr7.3:24990135-24990154 | None:intergenic | 60.0% | |
| CCTTGCTGCTGCAGTTGCTG+TGG | - | chr7.3:24990132-24990151 | MS.gene065473:CDS | 60.0% | |
| GAGTGCAGAGTCAGAGTCCG+AGG | - | chr7.3:24990375-24990394 | MS.gene065473:CDS | 60.0% | |
| GGAGGAGAAAGCAGCCGCTA+AGG | - | chr7.3:24989886-24989905 | MS.gene065473:CDS | 60.0% | |
| GGCCATGAGGAGAGCTGAGA+AGG | - | chr7.3:24989556-24989575 | MS.gene065473:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 24989086 | 24990405 | 24989086 | ID=MS.gene065473 |
| chr7.3 | mRNA | 24989086 | 24990405 | 24989086 | ID=MS.gene065473.t1;Parent=MS.gene065473 |
| chr7.3 | exon | 24989086 | 24990405 | 24989086 | ID=MS.gene065473.t1.exon1;Parent=MS.gene065473.t1 |
| chr7.3 | CDS | 24989086 | 24990405 | 24989086 | ID=cds.MS.gene065473.t1;Parent=MS.gene065473.t1 |
| Gene Sequence |
| Protein sequence |
