Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059339.t1 | XP_013461532.1 | 100 | 224 | 0 | 0 | 1 | 224 | 1 | 224 | 8.40E-129 | 469.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059339.t1 | Q9M5M7 | 95.9 | 218 | 9 | 0 | 1 | 218 | 1 | 218 | 2.3e-122 | 439.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059339.t1 | A0A072V158 | 100.0 | 224 | 0 | 0 | 1 | 224 | 1 | 224 | 6.1e-129 | 469.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049386 | MS.gene059339 | 0.993068 | 3.05E-197 | -1.69E-46 |
| MS.gene059339 | MS.gene065473 | 0.839572 | 1.46E-57 | -1.69E-46 |
| MS.gene059339 | MS.gene071678 | 0.828617 | 8.14E-55 | -1.69E-46 |
| MS.gene059339 | MS.gene23804 | 0.820808 | 5.64E-53 | -1.69E-46 |
| MS.gene059339 | MS.gene45749 | 0.879499 | 1.19E-69 | -1.69E-46 |
| MS.gene059339 | MS.gene76548 | 0.824643 | 7.22E-54 | -1.69E-46 |
| MS.gene059339 | MS.gene93753 | 0.832313 | 1.01E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene043476 | MS.gene059339 | PPI |
| MS.gene059339 | MS.gene049604 | PPI |
| MS.gene53866 | MS.gene059339 | PPI |
| MS.gene059339 | MS.gene049386 | PPI |
| MS.gene31405 | MS.gene059339 | PPI |
| MS.gene028847 | MS.gene059339 | PPI |
| MS.gene059339 | MS.gene013414 | PPI |
| MS.gene05113 | MS.gene059339 | PPI |
| MS.gene059339 | MS.gene06510 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059339.t1 | MTR_3g094230 | 100.000 | 224 | 0 | 0 | 1 | 224 | 1 | 224 | 4.76e-169 | 464 |
| MS.gene059339.t1 | MTR_2g090910 | 98.649 | 222 | 3 | 0 | 1 | 222 | 1 | 222 | 1.29e-165 | 456 |
| MS.gene059339.t1 | MTR_3g062600 | 92.661 | 218 | 16 | 0 | 1 | 218 | 1 | 218 | 7.42e-152 | 421 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059339.t1 | AT1G26910 | 89.450 | 218 | 23 | 0 | 1 | 218 | 1 | 218 | 2.18e-147 | 409 |
| MS.gene059339.t1 | AT1G14320 | 88.991 | 218 | 24 | 0 | 1 | 218 | 1 | 218 | 4.25e-146 | 406 |
| MS.gene059339.t1 | AT1G66580 | 87.671 | 219 | 27 | 0 | 1 | 219 | 1 | 219 | 1.70e-144 | 402 |
| MS.gene059339.t1 | AT1G26910 | 88.398 | 181 | 21 | 0 | 38 | 218 | 1 | 181 | 1.17e-118 | 335 |
| MS.gene059339.t1 | AT1G14320 | 77.660 | 94 | 19 | 1 | 127 | 218 | 31 | 124 | 1.58e-46 | 150 |
| MS.gene059339.t1 | AT1G14320 | 97.436 | 39 | 1 | 0 | 38 | 76 | 1 | 39 | 1.85e-20 | 84.0 |
Find 68 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGCATTCCACTTGAGAGTT+AGG | 0.281116 | 3.4:+85870843 | MS.gene059339:CDS |
| TTCATCCATTCCATGTTCTT+AGG | 0.295164 | 3.4:+85870867 | MS.gene059339:CDS |
| ACTGGTATGAGAGGGGCTTT+TGG | 0.309142 | 3.4:+85870932 | MS.gene059339:CDS |
| CTTTGACATGTATTTGTTGC+AGG | 0.312261 | 3.4:-85870807 | None:intergenic |
| CAGAAACGTGACTTTGGATA+TGG | 0.332410 | 3.4:-85870641 | None:intergenic |
| GTTTCCTTTCTGTGTTCATC+TGG | 0.355959 | 3.4:+85870730 | MS.gene059339:CDS |
| CTGTGTTCATCTGGTCAGTT+GGG | 0.370061 | 3.4:+85870739 | MS.gene059339:CDS |
| ATTTGACGGTAACACCTTGC+AGG | 0.370519 | 3.4:-85870608 | None:intergenic |
| GCAGTCAGGAAAGCTCTTCC+AGG | 0.375435 | 3.4:-85871570 | None:intergenic |
| TCTGTGTTCATCTGGTCAGT+TGG | 0.393251 | 3.4:+85870738 | MS.gene059339:CDS |
| AACATCATAAATCCTGATCT+TGG | 0.406497 | 3.4:-85870681 | None:intergenic |
| TCACACCATCAGGCATAATT+CGG | 0.409368 | 3.4:-85871300 | None:intergenic |
| TTTGTGCTAGAGTGGCTATT+GGG | 0.420431 | 3.4:+85870969 | MS.gene059339:CDS |
| TTTCATGTGCGGGAGCTGAT+AGG | 0.426261 | 3.4:+85870903 | MS.gene059339:CDS |
| TTGCAGCTTCTTGGATGCCA+TGG | 0.430564 | 3.4:+85871528 | MS.gene059339:intron |
| TGCTAGAGTGGCTATTGGGC+AGG | 0.435686 | 3.4:+85870973 | MS.gene059339:CDS |
| GTTTGTGCTAGAGTGGCTAT+TGG | 0.453432 | 3.4:+85870968 | MS.gene059339:CDS |
| CATGTCAAAGTTTGCAGGAA+AGG | 0.453517 | 3.4:+85870820 | MS.gene059339:CDS |
| CAGCTGTAATGATGAGGCTT+AGG | 0.455136 | 3.4:+85871593 | MS.gene059339:CDS |
| TGCATTCCACTTGAGAGTTA+GGG | 0.456036 | 3.4:+85870844 | MS.gene059339:CDS |
| AGCAGCTTCAAGTGCCTCAC+TGG | 0.456981 | 3.4:-85870777 | None:intergenic |
| ATGGCTTGTTCTTAATTTGA+CGG | 0.461186 | 3.4:-85870622 | None:intergenic |
| CCACGGCAGAAACGTGACTT+TGG | 0.463875 | 3.4:-85870647 | None:intergenic |
| GGAAAGCTCTTCCAGGTTGA+CGG | 0.466465 | 3.4:-85871563 | None:intergenic |
| CATCATTACAGCTGGCAGTC+AGG | 0.468158 | 3.4:-85871584 | None:intergenic |
| AAATACATGTCAAAGTTTGC+AGG | 0.470834 | 3.4:+85870815 | MS.gene059339:CDS |
| ACCTTGGCATTCACACCATC+AGG | 0.473018 | 3.4:-85871310 | None:intergenic |
| TCTTCTTTCTGTTCGTTGCA+AGG | 0.480717 | 3.4:+85870997 | MS.gene059339:CDS |
| TAAATCCTGATCTTGGGATC+AGG | 0.483079 | 3.4:-85870674 | None:intergenic |
| ACATCATAAATCCTGATCTT+GGG | 0.486665 | 3.4:-85870680 | None:intergenic |
| TCTTGGATGCCATGGACCAT+TGG | 0.496449 | 3.4:+85871536 | MS.gene059339:CDS |
| CCATTGGCCAACCGTCAACC+TGG | 0.501077 | 3.4:+85871552 | MS.gene059339:CDS |
| AACAAGATGCTTTCATGTGC+GGG | 0.504380 | 3.4:+85870893 | MS.gene059339:CDS |
| GTGTTCCTGATCCCAAGATC+AGG | 0.511204 | 3.4:+85870669 | MS.gene059339:CDS |
| CGTGCTAAGTTCAAGTTCCC+TGG | 0.513242 | 3.4:+85871055 | MS.gene059339:CDS |
| CCAGGTTGACGGTTGGCCAA+TGG | 0.514937 | 3.4:-85871552 | None:intergenic |
| GTCAAAAGATCATTGTTAGC+AGG | 0.521890 | 3.4:+85871080 | MS.gene059339:CDS |
| CAACAACAGCCATCATGCTC+AGG | 0.528429 | 3.4:+85871021 | MS.gene059339:CDS |
| AGATCATTGTTAGCAGGAAG+TGG | 0.531763 | 3.4:+85871086 | MS.gene059339:CDS |
| CTAAGCCTCATCATTACAGC+TGG | 0.532221 | 3.4:-85871592 | None:intergenic |
| GACGGTTGGCCAATGGTCCA+TGG | 0.540431 | 3.4:-85871545 | None:intergenic |
| AAGATCAGGATTTATGATGT+TGG | 0.544933 | 3.4:+85870683 | MS.gene059339:CDS |
| GGAGAGCCTCCTGAGCATGA+TGG | 0.562150 | 3.4:-85871030 | None:intergenic |
| ACAAGGTGTTTGTGCTAGAG+TGG | 0.563189 | 3.4:+85870961 | MS.gene059339:CDS |
| GGCTTCAGACTGGTATGAGA+GGG | 0.563519 | 3.4:+85870924 | MS.gene059339:CDS |
| TCATCTGGTCAGTTGGGAGA+AGG | 0.572889 | 3.4:+85870745 | MS.gene059339:CDS |
| CTGACCAGATGAACACAGAA+AGG | 0.573863 | 3.4:-85870734 | None:intergenic |
| AGCTCTTCCAGGTTGACGGT+TGG | 0.574684 | 3.4:-85871559 | None:intergenic |
| GATGAACCCTAACTCTCAAG+TGG | 0.578245 | 3.4:-85870850 | None:intergenic |
| GATGTTGGTATGAAGAAGAA+AGG | 0.580932 | 3.4:+85870698 | MS.gene059339:CDS |
| CCAAAGTCACGTTTCTGCCG+TGG | 0.586608 | 3.4:+85870647 | MS.gene059339:CDS |
| GTGAGGCACTTGAAGCTGCT+AGG | 0.594487 | 3.4:+85870780 | MS.gene059339:CDS |
| CAACAAGATGCTTTCATGTG+CGG | 0.597854 | 3.4:+85870892 | MS.gene059339:CDS |
| TTGATCCTAAGAACATGGAA+TGG | 0.602625 | 3.4:-85870872 | None:intergenic |
| TTAACTTCAGATAATCAGCT+CGG | 0.606395 | 3.4:-85871267 | None:intergenic |
| AGGCTTCAGACTGGTATGAG+AGG | 0.607126 | 3.4:+85870923 | MS.gene059339:CDS |
| CAACAGCCATCATGCTCAGG+AGG | 0.612805 | 3.4:+85871024 | MS.gene059339:CDS |
| TCTTGTTGATCCTAAGAACA+TGG | 0.613434 | 3.4:-85870877 | None:intergenic |
| CAGGGAACTTGAACTTAGCA+CGG | 0.624584 | 3.4:-85871054 | None:intergenic |
| GACTGCCAGCTGTAATGATG+AGG | 0.627181 | 3.4:+85871587 | MS.gene059339:CDS |
| GGAGCTGATAGGCTTCAGAC+TGG | 0.660599 | 3.4:+85870914 | MS.gene059339:CDS |
| ACTCTAGCACAAACACCTTG+TGG | 0.661898 | 3.4:-85870959 | None:intergenic |
| GAGAACCGAATTATGCCTGA+TGG | 0.679163 | 3.4:+85871295 | MS.gene059339:CDS |
| GCCTGATGGTGTGAATGCCA+AGG | 0.685041 | 3.4:+85871309 | MS.gene059339:CDS |
| GCTTCAGACTGGTATGAGAG+GGG | 0.693964 | 3.4:+85870925 | MS.gene059339:CDS |
| GAAGGAAAATGTGTCCAGTG+AGG | 0.706232 | 3.4:+85870763 | MS.gene059339:CDS |
| TCTTGGGATCAGGAACACCA+CGG | 0.737353 | 3.4:-85870664 | None:intergenic |
| GGAACTTGAACTTAGCACGG+CGG | 0.787728 | 3.4:-85871051 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GAAACAAATTATATATTTTT+AGG | - | chr3.4:85870011-85870030 | None:intergenic | 10.0% |
| !! | AAAAATGAAATAAGAATTCA+TGG | - | chr3.4:85869419-85869438 | None:intergenic | 15.0% |
| !! | AGCAAAAAAAAAAAAAAGTA+AGG | - | chr3.4:85869371-85869390 | None:intergenic | 15.0% |
| !! | TCGTAAATATAATGAAATTT+CGG | - | chr3.4:85869596-85869615 | None:intergenic | 15.0% |
| !! | TTTAACAAATTATGAAACAT+TGG | - | chr3.4:85869764-85869783 | None:intergenic | 15.0% |
| !!! | ATCATGTTTGTTTTATTTAT+AGG | + | chr3.4:85870584-85870603 | MS.gene059339:intron | 15.0% |
| !!! | ATTTTAGTTTGGAATATATT+GGG | + | chr3.4:85871395-85871414 | MS.gene059339:intron | 15.0% |
| !!! | TTATTTGTATCATTTTAGTT+TGG | + | chr3.4:85871384-85871403 | MS.gene059339:intron | 15.0% |
| !!! | TTATTTTGTATTTGTGATTT+AGG | + | chr3.4:85869547-85869566 | MS.gene059339:intron | 15.0% |
| !!! | TTTTATTTTCTGTTTTGATT+TGG | + | chr3.4:85869631-85869650 | MS.gene059339:intron | 15.0% |
| !! | ACCACTATAAAAAATCAAAA+AGG | - | chr3.4:85870200-85870219 | None:intergenic | 20.0% |
| !! | CAATGAATATAGTTAAAACA+TGG | - | chr3.4:85871209-85871228 | None:intergenic | 20.0% |
| !! | CCACTATAAAAAATCAAAAA+GGG | - | chr3.4:85870199-85870218 | None:intergenic | 20.0% |
| !! | CTAGTATTCATAATACATAA+TGG | + | chr3.4:85870342-85870361 | MS.gene059339:intron | 20.0% |
| !! | TAATGAACACAAATGAAAAT+AGG | - | chr3.4:85870411-85870430 | None:intergenic | 20.0% |
| !! | TATTTGTGATTTAGGAATTA+GGG | + | chr3.4:85869555-85869574 | MS.gene059339:intron | 20.0% |
| !! | TCATTATTCATTTGTAATTG+TGG | + | chr3.4:85870425-85870444 | MS.gene059339:intron | 20.0% |
| !!! | AAAACATGGATTAAAGTAAA+AGG | - | chr3.4:85871195-85871214 | None:intergenic | 20.0% |
| !!! | AACCAAATAAGTTTTGATTA+AGG | + | chr3.4:85869794-85869813 | MS.gene059339:intron | 20.0% |
| !!! | ACCAAATAAGTTTTGATTAA+GGG | + | chr3.4:85869795-85869814 | MS.gene059339:intron | 20.0% |
| !!! | AGATTCATTTTTTTGTCTAT+TGG | + | chr3.4:85870542-85870561 | MS.gene059339:intron | 20.0% |
| !!! | CATTTTAGTTTGGAATATAT+TGG | + | chr3.4:85871394-85871413 | MS.gene059339:intron | 20.0% |
| !!! | GGTTTTAAAAAAACATGTTA+AGG | - | chr3.4:85870178-85870197 | None:intergenic | 20.0% |
| ! | AAAAAACAAGCCAATTCAAA+CGG | + | chr3.4:85869983-85870002 | MS.gene059339:intron | 25.0% |
| ! | AAAATATGAGAAGGGAATTA+GGG | - | chr3.4:85869344-85869363 | None:intergenic | 25.0% |
| ! | AAGGAATGAAAATATGAGAA+GGG | - | chr3.4:85869352-85869371 | None:intergenic | 25.0% |
| ! | AATCTGTTTGAACACTAAAT+TGG | + | chr3.4:85871440-85871459 | MS.gene059339:intron | 25.0% |
| ! | ACCCTTAATCAAAACTTATT+TGG | - | chr3.4:85869799-85869818 | None:intergenic | 25.0% |
| ! | CAAAATTAAGCTAATCCAAA+CGG | - | chr3.4:85869822-85869841 | None:intergenic | 25.0% |
| ! | GTATTTGTGATTTAGGAATT+AGG | + | chr3.4:85869554-85869573 | MS.gene059339:intron | 25.0% |
| ! | TAAGGAATGAAAATATGAGA+AGG | - | chr3.4:85869353-85869372 | None:intergenic | 25.0% |
| ! | TTGAAAAAGAGATCAGAAAT+TGG | - | chr3.4:85869506-85869525 | None:intergenic | 25.0% |
| !! | AGATATGATGATGTTTACAT+TGG | + | chr3.4:85869444-85869463 | MS.gene059339:intron | 25.0% |
| !! | AGGTTTATACGATAATTTTG+TGG | + | chr3.4:85870070-85870089 | MS.gene059339:intron | 25.0% |
| !!! | CCCTTTTTGATTTTTTATAG+TGG | + | chr3.4:85870196-85870215 | MS.gene059339:intron | 25.0% |
| !!! | CTTGTTTTCATTTGTCATTA+TGG | + | chr3.4:85870500-85870519 | MS.gene059339:intron | 25.0% |
| !!! | GTTAGTTTTGTCTAAGTAAT+TGG | + | chr3.4:85871475-85871494 | MS.gene059339:intron | 25.0% |
| !!! | GTTGTTTAAATGCTTTTTCA+GGG | + | chr3.4:85871228-85871247 | MS.gene059339:intron | 25.0% |
| !!! | TGATTTTTTATAGTGGTAGA+CGG | + | chr3.4:85870203-85870222 | MS.gene059339:intron | 25.0% |
| !!! | TGTTGTTTAAATGCTTTTTC+AGG | + | chr3.4:85871227-85871246 | MS.gene059339:intron | 25.0% |
| !!! | TTGTTTAAATGCTTTTTCAG+GGG | + | chr3.4:85871229-85871248 | MS.gene059339:intron | 25.0% |
| AAATACATGTCAAAGTTTGC+AGG | + | chr3.4:85870815-85870834 | MS.gene059339:CDS | 30.0% | |
| AACATCATAAATCCTGATCT+TGG | - | chr3.4:85870684-85870703 | None:intergenic | 30.0% | |
| AAGATCAGGATTTATGATGT+TGG | + | chr3.4:85870683-85870702 | MS.gene059339:CDS | 30.0% | |
| ACAAATCTACATAGGATACA+GGG | - | chr3.4:85871154-85871173 | None:intergenic | 30.0% | |
| ACATAAAACACGACAAACAA+TGG | - | chr3.4:85870267-85870286 | None:intergenic | 30.0% | |
| ACATCATAAATCCTGATCTT+GGG | - | chr3.4:85870683-85870702 | None:intergenic | 30.0% | |
| AGAAACAAATATCCAACATG+CGG | - | chr3.4:85871365-85871384 | None:intergenic | 30.0% | |
| CCTATGTAGATTTGTAGTAT+GGG | + | chr3.4:85871159-85871178 | MS.gene059339:intron | 30.0% | |
| GAAAATATGAGAAGGGAATT+AGG | - | chr3.4:85869345-85869364 | None:intergenic | 30.0% | |
| GTGGTAAGTATTTGTTCTAT+TGG | + | chr3.4:85871105-85871124 | MS.gene059339:intron | 30.0% | |
| TACAAATCTACATAGGATAC+AGG | - | chr3.4:85871155-85871174 | None:intergenic | 30.0% | |
| TATGAGGATACAACTTTAGT+TGG | + | chr3.4:85869900-85869919 | MS.gene059339:intron | 30.0% | |
| TCCTATGTAGATTTGTAGTA+TGG | + | chr3.4:85871158-85871177 | MS.gene059339:intron | 30.0% | |
| TTAACTTCAGATAATCAGCT+CGG | - | chr3.4:85871270-85871289 | None:intergenic | 30.0% | |
| TTTGTAGTATGGGAATACTT+TGG | + | chr3.4:85871169-85871188 | MS.gene059339:intron | 30.0% | |
| ! | AAAAGAGCTTGTAAGTTGAA+AGG | - | chr3.4:85871501-85871520 | None:intergenic | 30.0% |
| ! | TGCTAACAATGATCTTTTGA+CGG | - | chr3.4:85871081-85871100 | None:intergenic | 30.0% |
| !! | ATGGCTTGTTCTTAATTTGA+CGG | - | chr3.4:85870625-85870644 | None:intergenic | 30.0% |
| !! | TTTTATTTATAGGACCTGCA+AGG | + | chr3.4:85870594-85870613 | MS.gene059339:intron | 30.0% |
| !!! | ATGCTTTTGAAATCGACATT+AGG | + | chr3.4:85870050-85870069 | MS.gene059339:intron | 30.0% |
| AAGAGATCAGAAATTGGAAG+AGG | - | chr3.4:85869500-85869519 | None:intergenic | 35.0% | |
| AAGCATGCTACGATACATAT+TGG | - | chr3.4:85870308-85870327 | None:intergenic | 35.0% | |
| ACATGTTAAGGTATGAAGAG+TGG | - | chr3.4:85870166-85870185 | None:intergenic | 35.0% | |
| CCCATACTACAAATCTACAT+AGG | - | chr3.4:85871162-85871181 | None:intergenic | 35.0% | |
| CTATGAGAAAACAGCTTATG+AGG | + | chr3.4:85869884-85869903 | MS.gene059339:intron | 35.0% | |
| GAACTAGCAAACAATGACAA+TGG | - | chr3.4:85870096-85870115 | None:intergenic | 35.0% | |
| GATGTTGGTATGAAGAAGAA+AGG | + | chr3.4:85870698-85870717 | MS.gene059339:CDS | 35.0% | |
| GTCAAAAGATCATTGTTAGC+AGG | + | chr3.4:85871080-85871099 | MS.gene059339:CDS | 35.0% | |
| TCTTGTTGATCCTAAGAACA+TGG | - | chr3.4:85870880-85870899 | None:intergenic | 35.0% | |
| TTAAGGTATGAAGAGTGGTT+AGG | - | chr3.4:85870161-85870180 | None:intergenic | 35.0% | |
| TTCATCCATTCCATGTTCTT+AGG | + | chr3.4:85870867-85870886 | MS.gene059339:CDS | 35.0% | |
| TTGATCCTAAGAACATGGAA+TGG | - | chr3.4:85870875-85870894 | None:intergenic | 35.0% | |
| ! | CTTTGACATGTATTTGTTGC+AGG | - | chr3.4:85870810-85870829 | None:intergenic | 35.0% |
| ! | GTTCTTGTGTATGGATTGTA+AGG | + | chr3.4:85870112-85870131 | MS.gene059339:intron | 35.0% |
| ! | TGTTTGCTAGTTCTTGTGTA+TGG | + | chr3.4:85870103-85870122 | MS.gene059339:intron | 35.0% |
| ! | TTTGTGATTTTGCAGCTTCT+TGG | + | chr3.4:85871519-85871538 | MS.gene059339:intron | 35.0% |
| !!! | TTTTTAGGGTCCGTTTGAAT+TGG | - | chr3.4:85869996-85870015 | None:intergenic | 35.0% |
| AACAAGATGCTTTCATGTGC+GGG | + | chr3.4:85870893-85870912 | MS.gene059339:CDS | 40.0% | |
| AGATCATTGTTAGCAGGAAG+TGG | + | chr3.4:85871086-85871105 | MS.gene059339:CDS | 40.0% | |
| ATGCATTCCACTTGAGAGTT+AGG | + | chr3.4:85870843-85870862 | MS.gene059339:CDS | 40.0% | |
| CAACAAGATGCTTTCATGTG+CGG | + | chr3.4:85870892-85870911 | MS.gene059339:CDS | 40.0% | |
| CAGAAACGTGACTTTGGATA+TGG | - | chr3.4:85870644-85870663 | None:intergenic | 40.0% | |
| CATGTCAAAGTTTGCAGGAA+AGG | + | chr3.4:85870820-85870839 | MS.gene059339:CDS | 40.0% | |
| GAATTCATTGTACCGCATGT+TGG | + | chr3.4:85871350-85871369 | MS.gene059339:intron | 40.0% | |
| GGTTGCTTATCGATGAATTC+AGG | + | chr3.4:85870133-85870152 | MS.gene059339:intron | 40.0% | |
| GTTTCCTTTCTGTGTTCATC+TGG | + | chr3.4:85870730-85870749 | MS.gene059339:CDS | 40.0% | |
| TAAATCCTGATCTTGGGATC+AGG | - | chr3.4:85870677-85870696 | None:intergenic | 40.0% | |
| TATGCAGCTTCACATTACCT+TGG | - | chr3.4:85871329-85871348 | None:intergenic | 40.0% | |
| TCACACCATCAGGCATAATT+CGG | - | chr3.4:85871303-85871322 | None:intergenic | 40.0% | |
| TCTTCTTTCTGTTCGTTGCA+AGG | + | chr3.4:85870997-85871016 | MS.gene059339:CDS | 40.0% | |
| TGCATTCCACTTGAGAGTTA+GGG | + | chr3.4:85870844-85870863 | MS.gene059339:CDS | 40.0% | |
| TTTATAGTGGTAGACGGTAG+TGG | + | chr3.4:85870209-85870228 | MS.gene059339:intron | 40.0% | |
| TTTGTGCTAGAGTGGCTATT+GGG | + | chr3.4:85870969-85870988 | MS.gene059339:CDS | 40.0% | |
| !!! | GTTTTGATTAAGGGTCCGTT+TGG | + | chr3.4:85869804-85869823 | MS.gene059339:intron | 40.0% |
| ACTCTAGCACAAACACCTTG+TGG | - | chr3.4:85870962-85870981 | None:intergenic | 45.0% | |
| ATTGGAAGAGGTTGTCTGTC+AGG | - | chr3.4:85869488-85869507 | None:intergenic | 45.0% | |
| ATTTGACGGTAACACCTTGC+AGG | - | chr3.4:85870611-85870630 | None:intergenic | 45.0% | |
| CAGGGAACTTGAACTTAGCA+CGG | - | chr3.4:85871057-85871076 | None:intergenic | 45.0% | |
| CTAAGCCTCATCATTACAGC+TGG | - | chr3.4:85871595-85871614 | None:intergenic | 45.0% | |
| CTGACCAGATGAACACAGAA+AGG | - | chr3.4:85870737-85870756 | None:intergenic | 45.0% | |
| CTGTGTTCATCTGGTCAGTT+GGG | + | chr3.4:85870739-85870758 | MS.gene059339:CDS | 45.0% | |
| GAAGGAAAATGTGTCCAGTG+AGG | + | chr3.4:85870763-85870782 | MS.gene059339:CDS | 45.0% | |
| GAGAACCGAATTATGCCTGA+TGG | + | chr3.4:85871295-85871314 | MS.gene059339:CDS | 45.0% | |
| GATGAACCCTAACTCTCAAG+TGG | - | chr3.4:85870853-85870872 | None:intergenic | 45.0% | |
| GTCAGGGTGAATCAGAAACA+CGG | - | chr3.4:85869471-85869490 | None:intergenic | 45.0% | |
| GTTTGTGCTAGAGTGGCTAT+TGG | + | chr3.4:85870968-85870987 | MS.gene059339:CDS | 45.0% | |
| TCTGTGTTCATCTGGTCAGT+TGG | + | chr3.4:85870738-85870757 | MS.gene059339:CDS | 45.0% | |
| TGGCTCATACAATACAAGCG+TGG | - | chr3.4:85870247-85870266 | None:intergenic | 45.0% | |
| TTGGAAGAGGTTGTCTGTCA+GGG | - | chr3.4:85869487-85869506 | None:intergenic | 45.0% | |
| ! | ACAAGGTGTTTGTGCTAGAG+TGG | + | chr3.4:85870961-85870980 | MS.gene059339:CDS | 45.0% |
| ! | ACAATGATCTTTTGACGGCC+AGG | - | chr3.4:85871076-85871095 | None:intergenic | 45.0% |
| ! | CAATGATCTTTTGACGGCCA+GGG | - | chr3.4:85871075-85871094 | None:intergenic | 45.0% |
| !!! | AAACAAATTATATATTTTTA+GGG | - | chr3.4:85870010-85870029 | None:intergenic | 5.0% |
| ACCTTGGCATTCACACCATC+AGG | - | chr3.4:85871313-85871332 | None:intergenic | 50.0% | |
| AGGCTTCAGACTGGTATGAG+AGG | + | chr3.4:85870923-85870942 | MS.gene059339:CDS | 50.0% | |
| CAACAACAGCCATCATGCTC+AGG | + | chr3.4:85871021-85871040 | MS.gene059339:CDS | 50.0% | |
| CATCATTACAGCTGGCAGTC+AGG | - | chr3.4:85871587-85871606 | None:intergenic | 50.0% | |
| GACTGCCAGCTGTAATGATG+AGG | + | chr3.4:85871587-85871606 | MS.gene059339:CDS | 50.0% | |
| GCTTCAGACTGGTATGAGAG+GGG | + | chr3.4:85870925-85870944 | MS.gene059339:CDS | 50.0% | |
| GGAACTTGAACTTAGCACGG+CGG | - | chr3.4:85871054-85871073 | None:intergenic | 50.0% | |
| GGCTTCAGACTGGTATGAGA+GGG | + | chr3.4:85870924-85870943 | MS.gene059339:CDS | 50.0% | |
| GTGTTCCTGATCCCAAGATC+AGG | + | chr3.4:85870669-85870688 | MS.gene059339:CDS | 50.0% | |
| TCATCTGGTCAGTTGGGAGA+AGG | + | chr3.4:85870745-85870764 | MS.gene059339:CDS | 50.0% | |
| TCTTGGATGCCATGGACCAT+TGG | + | chr3.4:85871536-85871555 | MS.gene059339:CDS | 50.0% | |
| TCTTGGGATCAGGAACACCA+CGG | - | chr3.4:85870667-85870686 | None:intergenic | 50.0% | |
| TTGCAGCTTCTTGGATGCCA+TGG | + | chr3.4:85871528-85871547 | MS.gene059339:intron | 50.0% | |
| TTTCATGTGCGGGAGCTGAT+AGG | + | chr3.4:85870903-85870922 | MS.gene059339:CDS | 50.0% | |
| ! | ACTGGTATGAGAGGGGCTTT+TGG | + | chr3.4:85870932-85870951 | MS.gene059339:CDS | 50.0% |
| ! | CGTGCTAAGTTCAAGTTCCC+TGG | + | chr3.4:85871055-85871074 | MS.gene059339:CDS | 50.0% |
| ! | GGAAAGCTCTTCCAGGTTGA+CGG | - | chr3.4:85871566-85871585 | None:intergenic | 50.0% |
| AGCAGCTTCAAGTGCCTCAC+TGG | - | chr3.4:85870780-85870799 | None:intergenic | 55.0% | |
| CAACAGCCATCATGCTCAGG+AGG | + | chr3.4:85871024-85871043 | MS.gene059339:CDS | 55.0% | |
| CCAAAGTCACGTTTCTGCCG+TGG | + | chr3.4:85870647-85870666 | MS.gene059339:CDS | 55.0% | |
| CCACGGCAGAAACGTGACTT+TGG | - | chr3.4:85870650-85870669 | None:intergenic | 55.0% | |
| GCAGTCAGGAAAGCTCTTCC+AGG | - | chr3.4:85871573-85871592 | None:intergenic | 55.0% | |
| GGAGCTGATAGGCTTCAGAC+TGG | + | chr3.4:85870914-85870933 | MS.gene059339:CDS | 55.0% | |
| TGCTAGAGTGGCTATTGGGC+AGG | + | chr3.4:85870973-85870992 | MS.gene059339:CDS | 55.0% | |
| ! | AGCTCTTCCAGGTTGACGGT+TGG | - | chr3.4:85871562-85871581 | None:intergenic | 55.0% |
| ! | GCCTGATGGTGTGAATGCCA+AGG | + | chr3.4:85871309-85871328 | MS.gene059339:CDS | 55.0% |
| ! | GTGAGGCACTTGAAGCTGCT+AGG | + | chr3.4:85870780-85870799 | MS.gene059339:CDS | 55.0% |
| !! | GGGGCTTTTGGAAAGCCACA+AGG | + | chr3.4:85870944-85870963 | MS.gene059339:CDS | 55.0% |
| CCATTGGCCAACCGTCAACC+TGG | + | chr3.4:85871552-85871571 | MS.gene059339:CDS | 60.0% | |
| GGAGAGCCTCCTGAGCATGA+TGG | - | chr3.4:85871033-85871052 | None:intergenic | 60.0% | |
| ! | CCAGGTTGACGGTTGGCCAA+TGG | - | chr3.4:85871555-85871574 | None:intergenic | 60.0% |
| ! | GACGGTTGGCCAATGGTCCA+TGG | - | chr3.4:85871548-85871567 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 85869325 | 85871614 | 85869325 | ID=MS.gene059339 |
| chr3.4 | mRNA | 85869325 | 85871614 | 85869325 | ID=MS.gene059339.t1;Parent=MS.gene059339 |
| chr3.4 | exon | 85869325 | 85869334 | 85869325 | ID=MS.gene059339.t1.exon1;Parent=MS.gene059339.t1 |
| chr3.4 | CDS | 85869325 | 85869334 | 85869325 | ID=cds.MS.gene059339.t1;Parent=MS.gene059339.t1 |
| chr3.4 | exon | 85870606 | 85871107 | 85870606 | ID=MS.gene059339.t1.exon2;Parent=MS.gene059339.t1 |
| chr3.4 | CDS | 85870606 | 85871107 | 85870606 | ID=cds.MS.gene059339.t1;Parent=MS.gene059339.t1 |
| chr3.4 | exon | 85871249 | 85871330 | 85871249 | ID=MS.gene059339.t1.exon3;Parent=MS.gene059339.t1 |
| chr3.4 | CDS | 85871249 | 85871330 | 85871249 | ID=cds.MS.gene059339.t1;Parent=MS.gene059339.t1 |
| chr3.4 | exon | 85871534 | 85871614 | 85871534 | ID=MS.gene059339.t1.exon4;Parent=MS.gene059339.t1 |
| chr3.4 | CDS | 85871534 | 85871614 | 85871534 | ID=cds.MS.gene059339.t1;Parent=MS.gene059339.t1 |
| Gene Sequence |
| Protein sequence |
