Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049386.t1 | XP_013461532.1 | 100 | 224 | 0 | 0 | 1 | 224 | 1 | 224 | 8.40E-129 | 469.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049386.t1 | Q9M5M7 | 95.9 | 218 | 9 | 0 | 1 | 218 | 1 | 218 | 2.3e-122 | 439.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049386.t1 | A0A072V158 | 100.0 | 224 | 0 | 0 | 1 | 224 | 1 | 224 | 6.1e-129 | 469.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049386 | MS.gene059339 | 0.993068 | 3.05E-197 | -1.69E-46 |
| MS.gene049386 | MS.gene063652 | 0.800693 | 1.28E-48 | -1.69E-46 |
| MS.gene049386 | MS.gene065473 | 0.838625 | 2.57E-57 | -1.69E-46 |
| MS.gene049386 | MS.gene071678 | 0.831849 | 1.32E-55 | -1.69E-46 |
| MS.gene049386 | MS.gene23804 | 0.811973 | 5.35E-51 | -1.69E-46 |
| MS.gene049386 | MS.gene45749 | 0.888047 | 8.35E-73 | -1.69E-46 |
| MS.gene049386 | MS.gene76548 | 0.827299 | 1.69E-54 | -1.69E-46 |
| MS.gene049386 | MS.gene93753 | 0.83817 | 3.37E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene013414 | MS.gene049386 | PPI |
| MS.gene049604 | MS.gene049386 | PPI |
| MS.gene043476 | MS.gene049386 | PPI |
| MS.gene059339 | MS.gene049386 | PPI |
| MS.gene53866 | MS.gene049386 | PPI |
| MS.gene31405 | MS.gene049386 | PPI |
| MS.gene028847 | MS.gene049386 | PPI |
| MS.gene06510 | MS.gene049386 | PPI |
| MS.gene05113 | MS.gene049386 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049386.t1 | MTR_3g094230 | 100.000 | 224 | 0 | 0 | 1 | 224 | 1 | 224 | 4.76e-169 | 464 |
| MS.gene049386.t1 | MTR_2g090910 | 98.649 | 222 | 3 | 0 | 1 | 222 | 1 | 222 | 1.29e-165 | 456 |
| MS.gene049386.t1 | MTR_3g062600 | 92.661 | 218 | 16 | 0 | 1 | 218 | 1 | 218 | 7.42e-152 | 421 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049386.t1 | AT1G26910 | 89.450 | 218 | 23 | 0 | 1 | 218 | 1 | 218 | 2.18e-147 | 409 |
| MS.gene049386.t1 | AT1G14320 | 88.991 | 218 | 24 | 0 | 1 | 218 | 1 | 218 | 4.25e-146 | 406 |
| MS.gene049386.t1 | AT1G66580 | 87.671 | 219 | 27 | 0 | 1 | 219 | 1 | 219 | 1.70e-144 | 402 |
| MS.gene049386.t1 | AT1G26910 | 88.398 | 181 | 21 | 0 | 38 | 218 | 1 | 181 | 1.17e-118 | 335 |
| MS.gene049386.t1 | AT1G14320 | 77.660 | 94 | 19 | 1 | 127 | 218 | 31 | 124 | 1.58e-46 | 150 |
| MS.gene049386.t1 | AT1G14320 | 97.436 | 39 | 1 | 0 | 38 | 76 | 1 | 39 | 1.85e-20 | 84.0 |
Find 68 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGCATTCCACTTGAGAGTT+AGG | 0.281116 | 3.1:+75367774 | MS.gene049386:CDS |
| TTCATCCATTCCATGTTCTT+AGG | 0.295164 | 3.1:+75367798 | MS.gene049386:CDS |
| ACTGGTATGAGAGGGGCTTT+TGG | 0.309142 | 3.1:+75367863 | MS.gene049386:CDS |
| CTTTGACATGTATTTGTTGC+AGG | 0.312261 | 3.1:-75367738 | None:intergenic |
| CAGAAACGTGACTTTGGATA+TGG | 0.332410 | 3.1:-75367572 | None:intergenic |
| GTTTCCTTTCTGTGTTCATC+TGG | 0.355959 | 3.1:+75367661 | MS.gene049386:CDS |
| CTGTGTTCATCTGGTCAGTT+GGG | 0.370061 | 3.1:+75367670 | MS.gene049386:CDS |
| ATTTGACGGTAACACCTTGC+AGG | 0.370519 | 3.1:-75367539 | None:intergenic |
| GCAGTCAGGAAAGCTCTTCC+AGG | 0.375435 | 3.1:-75368431 | None:intergenic |
| TCTGTGTTCATCTGGTCAGT+TGG | 0.393251 | 3.1:+75367669 | MS.gene049386:CDS |
| AACATCATAAATCCTGATCT+TGG | 0.406497 | 3.1:-75367612 | None:intergenic |
| TCACACCATCAGGCATAATT+CGG | 0.409368 | 3.1:-75368231 | None:intergenic |
| TTTGTGCTAGAGTGGCTATT+GGG | 0.420431 | 3.1:+75367900 | MS.gene049386:CDS |
| TTTCATGTGCGGGAGCTGAT+AGG | 0.426261 | 3.1:+75367834 | MS.gene049386:CDS |
| TTGCAGCTTCTTGGATGCCA+TGG | 0.430564 | 3.1:+75368389 | MS.gene049386:intron |
| TGCTAGAGTGGCTATTGGGC+AGG | 0.435686 | 3.1:+75367904 | MS.gene049386:CDS |
| GTTTGTGCTAGAGTGGCTAT+TGG | 0.453432 | 3.1:+75367899 | MS.gene049386:CDS |
| CATGTCAAAGTTTGCAGGAA+AGG | 0.453517 | 3.1:+75367751 | MS.gene049386:CDS |
| CAGCTGTAATGATGAGGCTT+AGG | 0.455136 | 3.1:+75368454 | MS.gene049386:CDS |
| TGCATTCCACTTGAGAGTTA+GGG | 0.456036 | 3.1:+75367775 | MS.gene049386:CDS |
| AGCAGCTTCAAGTGCCTCAC+TGG | 0.456981 | 3.1:-75367708 | None:intergenic |
| ATGGCTTGTTCTTAATTTGA+CGG | 0.461186 | 3.1:-75367553 | None:intergenic |
| CCACGGCAGAAACGTGACTT+TGG | 0.463875 | 3.1:-75367578 | None:intergenic |
| GGAAAGCTCTTCCAGGTTGA+CGG | 0.466465 | 3.1:-75368424 | None:intergenic |
| CATCATTACAGCTGGCAGTC+AGG | 0.468158 | 3.1:-75368445 | None:intergenic |
| AAATACATGTCAAAGTTTGC+AGG | 0.470834 | 3.1:+75367746 | MS.gene049386:CDS |
| ACCTTGGCATTCACACCATC+AGG | 0.473018 | 3.1:-75368241 | None:intergenic |
| TCTTCTTTCTGTTCGTTGCA+AGG | 0.480717 | 3.1:+75367928 | MS.gene049386:CDS |
| TAAATCCTGATCTTGGGATC+AGG | 0.483079 | 3.1:-75367605 | None:intergenic |
| ACATCATAAATCCTGATCTT+GGG | 0.486665 | 3.1:-75367611 | None:intergenic |
| TCTTGGATGCCATGGACCAT+TGG | 0.496449 | 3.1:+75368397 | MS.gene049386:CDS |
| CCATTGGCCAACCGTCAACC+TGG | 0.501077 | 3.1:+75368413 | MS.gene049386:CDS |
| AACAAGATGCTTTCATGTGC+GGG | 0.504380 | 3.1:+75367824 | MS.gene049386:CDS |
| GTGTTCCTGATCCCAAGATC+AGG | 0.511204 | 3.1:+75367600 | MS.gene049386:CDS |
| CGTGCTAAGTTCAAGTTCCC+TGG | 0.513242 | 3.1:+75367986 | MS.gene049386:CDS |
| CCAGGTTGACGGTTGGCCAA+TGG | 0.514937 | 3.1:-75368413 | None:intergenic |
| GTCAAAAGATCATTGTTAGC+AGG | 0.521890 | 3.1:+75368011 | MS.gene049386:CDS |
| CAACAACAGCCATCATGCTC+AGG | 0.528429 | 3.1:+75367952 | MS.gene049386:CDS |
| AGATCATTGTTAGCAGGAAG+TGG | 0.531763 | 3.1:+75368017 | MS.gene049386:CDS |
| CTAAGCCTCATCATTACAGC+TGG | 0.532221 | 3.1:-75368453 | None:intergenic |
| GACGGTTGGCCAATGGTCCA+TGG | 0.540431 | 3.1:-75368406 | None:intergenic |
| AAGATCAGGATTTATGATGT+TGG | 0.544933 | 3.1:+75367614 | MS.gene049386:CDS |
| GGAGAGCCTCCTGAGCATGA+TGG | 0.562150 | 3.1:-75367961 | None:intergenic |
| ACAAGGTGTTTGTGCTAGAG+TGG | 0.563189 | 3.1:+75367892 | MS.gene049386:CDS |
| GGCTTCAGACTGGTATGAGA+GGG | 0.563519 | 3.1:+75367855 | MS.gene049386:CDS |
| TCATCTGGTCAGTTGGGAGA+AGG | 0.572889 | 3.1:+75367676 | MS.gene049386:CDS |
| CTGACCAGATGAACACAGAA+AGG | 0.573863 | 3.1:-75367665 | None:intergenic |
| AGCTCTTCCAGGTTGACGGT+TGG | 0.574684 | 3.1:-75368420 | None:intergenic |
| GATGAACCCTAACTCTCAAG+TGG | 0.578245 | 3.1:-75367781 | None:intergenic |
| GATGTTGGTATGAAGAAGAA+AGG | 0.580932 | 3.1:+75367629 | MS.gene049386:CDS |
| CCAAAGTCACGTTTCTGCCG+TGG | 0.586608 | 3.1:+75367578 | MS.gene049386:CDS |
| GTGAGGCACTTGAAGCTGCT+AGG | 0.594487 | 3.1:+75367711 | MS.gene049386:CDS |
| CAACAAGATGCTTTCATGTG+CGG | 0.597854 | 3.1:+75367823 | MS.gene049386:CDS |
| TTGATCCTAAGAACATGGAA+TGG | 0.602625 | 3.1:-75367803 | None:intergenic |
| TTAACTTCAGATAATCAGCT+CGG | 0.606395 | 3.1:-75368198 | None:intergenic |
| AGGCTTCAGACTGGTATGAG+AGG | 0.607126 | 3.1:+75367854 | MS.gene049386:CDS |
| CAACAGCCATCATGCTCAGG+AGG | 0.612805 | 3.1:+75367955 | MS.gene049386:CDS |
| TCTTGTTGATCCTAAGAACA+TGG | 0.613434 | 3.1:-75367808 | None:intergenic |
| CAGGGAACTTGAACTTAGCA+CGG | 0.624584 | 3.1:-75367985 | None:intergenic |
| GACTGCCAGCTGTAATGATG+AGG | 0.627181 | 3.1:+75368448 | MS.gene049386:CDS |
| GGAGCTGATAGGCTTCAGAC+TGG | 0.660599 | 3.1:+75367845 | MS.gene049386:CDS |
| ACTCTAGCACAAACACCTTG+TGG | 0.661898 | 3.1:-75367890 | None:intergenic |
| GAGAACCGAATTATGCCTGA+TGG | 0.679163 | 3.1:+75368226 | MS.gene049386:CDS |
| GCCTGATGGTGTGAATGCCA+AGG | 0.685041 | 3.1:+75368240 | MS.gene049386:CDS |
| GCTTCAGACTGGTATGAGAG+GGG | 0.693964 | 3.1:+75367856 | MS.gene049386:CDS |
| GAAGGAAAATGTGTCCAGTG+AGG | 0.706232 | 3.1:+75367694 | MS.gene049386:CDS |
| TCTTGGGATCAGGAACACCA+CGG | 0.737353 | 3.1:-75367595 | None:intergenic |
| GGAACTTGAACTTAGCACGG+CGG | 0.787728 | 3.1:-75367982 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GAAACAAATTATATATTTTT+AGG | - | chr3.1:75366942-75366961 | None:intergenic | 10.0% |
| !! | AAAAATGAAATAAGAATTCA+TGG | - | chr3.1:75366288-75366307 | None:intergenic | 15.0% |
| !! | TTTAACAAATTATGAAACAT+TGG | - | chr3.1:75366695-75366714 | None:intergenic | 15.0% |
| !!! | ATCATGTTTGTTTTATTTAT+AGG | + | chr3.1:75367515-75367534 | MS.gene049386:intron | 15.0% |
| !!! | TTATTTTGTATTTGTGATTT+AGG | + | chr3.1:75366415-75366434 | MS.gene049386:intron | 15.0% |
| !!! | TTTTATTTTCTGTTTTGATT+TGG | + | chr3.1:75366499-75366518 | MS.gene049386:intron | 15.0% |
| !! | AAATGAATGAAAATATGAGA+AGG | - | chr3.1:75366224-75366243 | None:intergenic | 20.0% |
| !! | AATGAATGAAAATATGAGAA+GGG | - | chr3.1:75366223-75366242 | None:intergenic | 20.0% |
| !! | ACCACTATAAAAAATCAAAA+AGG | - | chr3.1:75367131-75367150 | None:intergenic | 20.0% |
| !! | CAATGAATATAGTTAAAACA+TGG | - | chr3.1:75368140-75368159 | None:intergenic | 20.0% |
| !! | CCACTATAAAAAATCAAAAA+GGG | - | chr3.1:75367130-75367149 | None:intergenic | 20.0% |
| !! | CTAGTATTCATAATACATAA+TGG | + | chr3.1:75367273-75367292 | MS.gene049386:intron | 20.0% |
| !! | TAATGAACACAAATGAAAAT+AGG | - | chr3.1:75367342-75367361 | None:intergenic | 20.0% |
| !! | TATTTGTGATTTAGGAATTA+GGG | + | chr3.1:75366423-75366442 | MS.gene049386:intron | 20.0% |
| !! | TCATTATTCATTTGTAATTG+TGG | + | chr3.1:75367356-75367375 | MS.gene049386:intron | 20.0% |
| !!! | AAAACATGGATTAAAGTAAA+AGG | - | chr3.1:75368126-75368145 | None:intergenic | 20.0% |
| !!! | AACCAAATAAGTTTTGATTA+AGG | + | chr3.1:75366725-75366744 | MS.gene049386:intron | 20.0% |
| !!! | ACCAAATAAGTTTTGATTAA+GGG | + | chr3.1:75366726-75366745 | MS.gene049386:intron | 20.0% |
| !!! | AGATTCATTTTTTTGTCTAT+TGG | + | chr3.1:75367473-75367492 | MS.gene049386:intron | 20.0% |
| !!! | GGTTTTAAAAAAACATGTTA+AGG | - | chr3.1:75367109-75367128 | None:intergenic | 20.0% |
| ! | AAAAAACAAGCCAATTCAAA+CGG | + | chr3.1:75366914-75366933 | MS.gene049386:intron | 25.0% |
| ! | AAAATATGAGAAGGGAATTA+GGG | - | chr3.1:75366215-75366234 | None:intergenic | 25.0% |
| ! | ACCCTTAATCAAAACTTATT+TGG | - | chr3.1:75366730-75366749 | None:intergenic | 25.0% |
| ! | CAAAATTAAGCTAATCCAAA+CGG | - | chr3.1:75366753-75366772 | None:intergenic | 25.0% |
| ! | GTATTTGTGATTTAGGAATT+AGG | + | chr3.1:75366422-75366441 | MS.gene049386:intron | 25.0% |
| ! | TATCTGTTTGAACACTAAAT+TGG | + | chr3.1:75368301-75368320 | MS.gene049386:intron | 25.0% |
| ! | TTGAAAAAGAGATCAGAAAT+TGG | - | chr3.1:75366375-75366394 | None:intergenic | 25.0% |
| !! | AGATATGATGATGTTTACAT+TGG | + | chr3.1:75366313-75366332 | MS.gene049386:intron | 25.0% |
| !! | AGGTTTATACGATAATTTTG+TGG | + | chr3.1:75367001-75367020 | MS.gene049386:intron | 25.0% |
| !!! | CCCTTTTTGATTTTTTATAG+TGG | + | chr3.1:75367127-75367146 | MS.gene049386:intron | 25.0% |
| !!! | CTTGTTTTCATTTGTCATTA+TGG | + | chr3.1:75367431-75367450 | MS.gene049386:intron | 25.0% |
| !!! | GTTAGTTTTGTCTAAGTAAT+TGG | + | chr3.1:75368336-75368355 | MS.gene049386:intron | 25.0% |
| !!! | GTTGTTTAAATGCTTTTTCA+GGG | + | chr3.1:75368159-75368178 | MS.gene049386:intron | 25.0% |
| !!! | TGATTTTTTATAGTGGTAGA+CGG | + | chr3.1:75367134-75367153 | MS.gene049386:intron | 25.0% |
| !!! | TGTTGTTTAAATGCTTTTTC+AGG | + | chr3.1:75368158-75368177 | MS.gene049386:intron | 25.0% |
| !!! | TTGTTTAAATGCTTTTTCAG+GGG | + | chr3.1:75368160-75368179 | MS.gene049386:intron | 25.0% |
| AAATACATGTCAAAGTTTGC+AGG | + | chr3.1:75367746-75367765 | MS.gene049386:CDS | 30.0% | |
| AACATCATAAATCCTGATCT+TGG | - | chr3.1:75367615-75367634 | None:intergenic | 30.0% | |
| AAGATCAGGATTTATGATGT+TGG | + | chr3.1:75367614-75367633 | MS.gene049386:CDS | 30.0% | |
| ACAAATCTACATAGGATACA+GGG | - | chr3.1:75368085-75368104 | None:intergenic | 30.0% | |
| ACATAAAACACGACAAACAA+TGG | - | chr3.1:75367198-75367217 | None:intergenic | 30.0% | |
| ACATCATAAATCCTGATCTT+GGG | - | chr3.1:75367614-75367633 | None:intergenic | 30.0% | |
| CCTATGTAGATTTGTAGTAT+GGG | + | chr3.1:75368090-75368109 | MS.gene049386:intron | 30.0% | |
| GAAAATATGAGAAGGGAATT+AGG | - | chr3.1:75366216-75366235 | None:intergenic | 30.0% | |
| GTGGTAAGTATTTGTTCTAT+TGG | + | chr3.1:75368036-75368055 | MS.gene049386:intron | 30.0% | |
| TACAAATCTACATAGGATAC+AGG | - | chr3.1:75368086-75368105 | None:intergenic | 30.0% | |
| TATGAGGATACAACTTTAGT+TGG | + | chr3.1:75366831-75366850 | MS.gene049386:intron | 30.0% | |
| TCCTATGTAGATTTGTAGTA+TGG | + | chr3.1:75368089-75368108 | MS.gene049386:intron | 30.0% | |
| TTAACTTCAGATAATCAGCT+CGG | - | chr3.1:75368201-75368220 | None:intergenic | 30.0% | |
| TTTGTAGTATGGGAATACTT+TGG | + | chr3.1:75368100-75368119 | MS.gene049386:intron | 30.0% | |
| ! | AAAAGAGCTTGTAAGTTGAA+AGG | - | chr3.1:75368362-75368381 | None:intergenic | 30.0% |
| ! | TGCTAACAATGATCTTTTGA+CGG | - | chr3.1:75368012-75368031 | None:intergenic | 30.0% |
| !! | ATGGCTTGTTCTTAATTTGA+CGG | - | chr3.1:75367556-75367575 | None:intergenic | 30.0% |
| !! | TTTTATTTATAGGACCTGCA+AGG | + | chr3.1:75367525-75367544 | MS.gene049386:intron | 30.0% |
| !!! | ATGCTTTTGAAATCGACATT+AGG | + | chr3.1:75366981-75367000 | MS.gene049386:intron | 30.0% |
| AAGAGATCAGAAATTGGAAG+AGG | - | chr3.1:75366369-75366388 | None:intergenic | 35.0% | |
| AAGCATGCTACGATACATAT+TGG | - | chr3.1:75367239-75367258 | None:intergenic | 35.0% | |
| ACATGTTAAGGTATGAAGAG+TGG | - | chr3.1:75367097-75367116 | None:intergenic | 35.0% | |
| CCCATACTACAAATCTACAT+AGG | - | chr3.1:75368093-75368112 | None:intergenic | 35.0% | |
| CTATGAGAAAACAGCTTATG+AGG | + | chr3.1:75366815-75366834 | MS.gene049386:intron | 35.0% | |
| GAACTAGCAAACAATGACAA+TGG | - | chr3.1:75367027-75367046 | None:intergenic | 35.0% | |
| GATGTTGGTATGAAGAAGAA+AGG | + | chr3.1:75367629-75367648 | MS.gene049386:CDS | 35.0% | |
| GTCAAAAGATCATTGTTAGC+AGG | + | chr3.1:75368011-75368030 | MS.gene049386:CDS | 35.0% | |
| GTGTTCAAACAGATAACATG+CGG | - | chr3.1:75368296-75368315 | None:intergenic | 35.0% | |
| TCTTGTTGATCCTAAGAACA+TGG | - | chr3.1:75367811-75367830 | None:intergenic | 35.0% | |
| TTAAGGTATGAAGAGTGGTT+AGG | - | chr3.1:75367092-75367111 | None:intergenic | 35.0% | |
| TTCATCCATTCCATGTTCTT+AGG | + | chr3.1:75367798-75367817 | MS.gene049386:CDS | 35.0% | |
| TTGATCCTAAGAACATGGAA+TGG | - | chr3.1:75367806-75367825 | None:intergenic | 35.0% | |
| ! | CTTTGACATGTATTTGTTGC+AGG | - | chr3.1:75367741-75367760 | None:intergenic | 35.0% |
| ! | GTTCTTGTGTATGGATTGTA+AGG | + | chr3.1:75367043-75367062 | MS.gene049386:intron | 35.0% |
| ! | TGTTTGCTAGTTCTTGTGTA+TGG | + | chr3.1:75367034-75367053 | MS.gene049386:intron | 35.0% |
| ! | TTTGTGATTTTGCAGCTTCT+TGG | + | chr3.1:75368380-75368399 | MS.gene049386:intron | 35.0% |
| !!! | TTTTTAGGGTCCGTTTGAAT+TGG | - | chr3.1:75366927-75366946 | None:intergenic | 35.0% |
| AACAAGATGCTTTCATGTGC+GGG | + | chr3.1:75367824-75367843 | MS.gene049386:CDS | 40.0% | |
| AGATCATTGTTAGCAGGAAG+TGG | + | chr3.1:75368017-75368036 | MS.gene049386:CDS | 40.0% | |
| ATGCATTCCACTTGAGAGTT+AGG | + | chr3.1:75367774-75367793 | MS.gene049386:CDS | 40.0% | |
| CAACAAGATGCTTTCATGTG+CGG | + | chr3.1:75367823-75367842 | MS.gene049386:CDS | 40.0% | |
| CAGAAACGTGACTTTGGATA+TGG | - | chr3.1:75367575-75367594 | None:intergenic | 40.0% | |
| CATGTCAAAGTTTGCAGGAA+AGG | + | chr3.1:75367751-75367770 | MS.gene049386:CDS | 40.0% | |
| GGTTGCTTATCGATGAATTC+AGG | + | chr3.1:75367064-75367083 | MS.gene049386:intron | 40.0% | |
| GTTTCCTTTCTGTGTTCATC+TGG | + | chr3.1:75367661-75367680 | MS.gene049386:CDS | 40.0% | |
| TAAATCCTGATCTTGGGATC+AGG | - | chr3.1:75367608-75367627 | None:intergenic | 40.0% | |
| TATGCAGCTTCACATTACCT+TGG | - | chr3.1:75368260-75368279 | None:intergenic | 40.0% | |
| TCACACCATCAGGCATAATT+CGG | - | chr3.1:75368234-75368253 | None:intergenic | 40.0% | |
| TCTTCTTTCTGTTCGTTGCA+AGG | + | chr3.1:75367928-75367947 | MS.gene049386:CDS | 40.0% | |
| TGCATTCCACTTGAGAGTTA+GGG | + | chr3.1:75367775-75367794 | MS.gene049386:CDS | 40.0% | |
| TTTATAGTGGTAGACGGTAG+TGG | + | chr3.1:75367140-75367159 | MS.gene049386:intron | 40.0% | |
| TTTGTGCTAGAGTGGCTATT+GGG | + | chr3.1:75367900-75367919 | MS.gene049386:CDS | 40.0% | |
| !!! | GTTTTGATTAAGGGTCCGTT+TGG | + | chr3.1:75366735-75366754 | MS.gene049386:intron | 40.0% |
| ACTCTAGCACAAACACCTTG+TGG | - | chr3.1:75367893-75367912 | None:intergenic | 45.0% | |
| ATTGGAAGAGGTTGTCTGTC+AGG | - | chr3.1:75366357-75366376 | None:intergenic | 45.0% | |
| ATTTGACGGTAACACCTTGC+AGG | - | chr3.1:75367542-75367561 | None:intergenic | 45.0% | |
| CAGGGAACTTGAACTTAGCA+CGG | - | chr3.1:75367988-75368007 | None:intergenic | 45.0% | |
| CTAAGCCTCATCATTACAGC+TGG | - | chr3.1:75368456-75368475 | None:intergenic | 45.0% | |
| CTGACCAGATGAACACAGAA+AGG | - | chr3.1:75367668-75367687 | None:intergenic | 45.0% | |
| CTGTGTTCATCTGGTCAGTT+GGG | + | chr3.1:75367670-75367689 | MS.gene049386:CDS | 45.0% | |
| GAAGGAAAATGTGTCCAGTG+AGG | + | chr3.1:75367694-75367713 | MS.gene049386:CDS | 45.0% | |
| GAGAACCGAATTATGCCTGA+TGG | + | chr3.1:75368226-75368245 | MS.gene049386:CDS | 45.0% | |
| GATGAACCCTAACTCTCAAG+TGG | - | chr3.1:75367784-75367803 | None:intergenic | 45.0% | |
| GTCAGGGTGAATCAGAAACA+CGG | - | chr3.1:75366340-75366359 | None:intergenic | 45.0% | |
| GTTTGTGCTAGAGTGGCTAT+TGG | + | chr3.1:75367899-75367918 | MS.gene049386:CDS | 45.0% | |
| TCTGTGTTCATCTGGTCAGT+TGG | + | chr3.1:75367669-75367688 | MS.gene049386:CDS | 45.0% | |
| TGGCTCATACAATACAAGCG+TGG | - | chr3.1:75367178-75367197 | None:intergenic | 45.0% | |
| TTGGAAGAGGTTGTCTGTCA+GGG | - | chr3.1:75366356-75366375 | None:intergenic | 45.0% | |
| ! | ACAAGGTGTTTGTGCTAGAG+TGG | + | chr3.1:75367892-75367911 | MS.gene049386:CDS | 45.0% |
| ! | ACAATGATCTTTTGACGGCC+AGG | - | chr3.1:75368007-75368026 | None:intergenic | 45.0% |
| ! | CAATGATCTTTTGACGGCCA+GGG | - | chr3.1:75368006-75368025 | None:intergenic | 45.0% |
| !!! | AAACAAATTATATATTTTTA+GGG | - | chr3.1:75366941-75366960 | None:intergenic | 5.0% |
| ACCTTGGCATTCACACCATC+AGG | - | chr3.1:75368244-75368263 | None:intergenic | 50.0% | |
| AGGCTTCAGACTGGTATGAG+AGG | + | chr3.1:75367854-75367873 | MS.gene049386:CDS | 50.0% | |
| CAACAACAGCCATCATGCTC+AGG | + | chr3.1:75367952-75367971 | MS.gene049386:CDS | 50.0% | |
| CATCATTACAGCTGGCAGTC+AGG | - | chr3.1:75368448-75368467 | None:intergenic | 50.0% | |
| GACTGCCAGCTGTAATGATG+AGG | + | chr3.1:75368448-75368467 | MS.gene049386:CDS | 50.0% | |
| GCTTCAGACTGGTATGAGAG+GGG | + | chr3.1:75367856-75367875 | MS.gene049386:CDS | 50.0% | |
| GGAACTTGAACTTAGCACGG+CGG | - | chr3.1:75367985-75368004 | None:intergenic | 50.0% | |
| GGCTTCAGACTGGTATGAGA+GGG | + | chr3.1:75367855-75367874 | MS.gene049386:CDS | 50.0% | |
| GTGTTCCTGATCCCAAGATC+AGG | + | chr3.1:75367600-75367619 | MS.gene049386:CDS | 50.0% | |
| TCATCTGGTCAGTTGGGAGA+AGG | + | chr3.1:75367676-75367695 | MS.gene049386:CDS | 50.0% | |
| TCTTGGATGCCATGGACCAT+TGG | + | chr3.1:75368397-75368416 | MS.gene049386:CDS | 50.0% | |
| TCTTGGGATCAGGAACACCA+CGG | - | chr3.1:75367598-75367617 | None:intergenic | 50.0% | |
| TTGCAGCTTCTTGGATGCCA+TGG | + | chr3.1:75368389-75368408 | MS.gene049386:intron | 50.0% | |
| TTTCATGTGCGGGAGCTGAT+AGG | + | chr3.1:75367834-75367853 | MS.gene049386:CDS | 50.0% | |
| ! | ACTGGTATGAGAGGGGCTTT+TGG | + | chr3.1:75367863-75367882 | MS.gene049386:CDS | 50.0% |
| ! | CGTGCTAAGTTCAAGTTCCC+TGG | + | chr3.1:75367986-75368005 | MS.gene049386:CDS | 50.0% |
| ! | GGAAAGCTCTTCCAGGTTGA+CGG | - | chr3.1:75368427-75368446 | None:intergenic | 50.0% |
| AGCAGCTTCAAGTGCCTCAC+TGG | - | chr3.1:75367711-75367730 | None:intergenic | 55.0% | |
| CAACAGCCATCATGCTCAGG+AGG | + | chr3.1:75367955-75367974 | MS.gene049386:CDS | 55.0% | |
| CCAAAGTCACGTTTCTGCCG+TGG | + | chr3.1:75367578-75367597 | MS.gene049386:CDS | 55.0% | |
| CCACGGCAGAAACGTGACTT+TGG | - | chr3.1:75367581-75367600 | None:intergenic | 55.0% | |
| GCAGTCAGGAAAGCTCTTCC+AGG | - | chr3.1:75368434-75368453 | None:intergenic | 55.0% | |
| GGAGCTGATAGGCTTCAGAC+TGG | + | chr3.1:75367845-75367864 | MS.gene049386:CDS | 55.0% | |
| TGCTAGAGTGGCTATTGGGC+AGG | + | chr3.1:75367904-75367923 | MS.gene049386:CDS | 55.0% | |
| ! | AGCTCTTCCAGGTTGACGGT+TGG | - | chr3.1:75368423-75368442 | None:intergenic | 55.0% |
| ! | GCCTGATGGTGTGAATGCCA+AGG | + | chr3.1:75368240-75368259 | MS.gene049386:CDS | 55.0% |
| ! | GTGAGGCACTTGAAGCTGCT+AGG | + | chr3.1:75367711-75367730 | MS.gene049386:CDS | 55.0% |
| !! | GGGGCTTTTGGAAAGCCACA+AGG | + | chr3.1:75367875-75367894 | MS.gene049386:CDS | 55.0% |
| CCATTGGCCAACCGTCAACC+TGG | + | chr3.1:75368413-75368432 | MS.gene049386:CDS | 60.0% | |
| GGAGAGCCTCCTGAGCATGA+TGG | - | chr3.1:75367964-75367983 | None:intergenic | 60.0% | |
| ! | CCAGGTTGACGGTTGGCCAA+TGG | - | chr3.1:75368416-75368435 | None:intergenic | 60.0% |
| ! | GACGGTTGGCCAATGGTCCA+TGG | - | chr3.1:75368409-75368428 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 75366196 | 75368475 | 75366196 | ID=MS.gene049386 |
| chr3.1 | mRNA | 75366196 | 75368475 | 75366196 | ID=MS.gene049386.t1;Parent=MS.gene049386 |
| chr3.1 | exon | 75366196 | 75366205 | 75366196 | ID=MS.gene049386.t1.exon1;Parent=MS.gene049386.t1 |
| chr3.1 | CDS | 75366196 | 75366205 | 75366196 | ID=cds.MS.gene049386.t1;Parent=MS.gene049386.t1 |
| chr3.1 | exon | 75367537 | 75368038 | 75367537 | ID=MS.gene049386.t1.exon2;Parent=MS.gene049386.t1 |
| chr3.1 | CDS | 75367537 | 75368038 | 75367537 | ID=cds.MS.gene049386.t1;Parent=MS.gene049386.t1 |
| chr3.1 | exon | 75368180 | 75368261 | 75368180 | ID=MS.gene049386.t1.exon3;Parent=MS.gene049386.t1 |
| chr3.1 | CDS | 75368180 | 75368261 | 75368180 | ID=cds.MS.gene049386.t1;Parent=MS.gene049386.t1 |
| chr3.1 | exon | 75368395 | 75368475 | 75368395 | ID=MS.gene049386.t1.exon4;Parent=MS.gene049386.t1 |
| chr3.1 | CDS | 75368395 | 75368475 | 75368395 | ID=cds.MS.gene049386.t1;Parent=MS.gene049386.t1 |
| Gene Sequence |
| Protein sequence |
