Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065600.t1 | XP_013467608.1 | 99.5 | 205 | 1 | 0 | 1 | 205 | 180 | 384 | 1.20E-113 | 419.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065600.t1 | Q8S9J2 | 82.9 | 205 | 35 | 0 | 1 | 205 | 181 | 385 | 1.9e-99 | 363.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065600.t1 | A0A072VU52 | 99.5 | 205 | 1 | 0 | 1 | 205 | 180 | 384 | 8.6e-114 | 419.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052947 | MS.gene065600 | 0.81348 | 2.51E-51 | -1.69E-46 |
| MS.gene056631 | MS.gene065600 | 0.801001 | 1.11E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 47 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATACATGGATAGAATATT+TGG | 0.140591 | 1.4:-38974381 | None:intergenic |
| TTATAGGTGTAGCCAAATTA+TGG | 0.235240 | 1.4:+38974327 | None:intergenic |
| CTCTTCATCCTCCATGTAAA+TGG | 0.251052 | 1.4:-38975342 | None:intergenic |
| GTTCACTCCGTCCCATAATT+TGG | 0.255447 | 1.4:-38974339 | None:intergenic |
| ACTTCGACAAAGCCGGTTTA+AGG | 0.288565 | 1.4:-38976051 | None:intergenic |
| GGGTTTCCTTCCACAATCTT+TGG | 0.305525 | 1.4:-38975725 | None:intergenic |
| TCCATGTAAATGGATGATAA+AGG | 0.366918 | 1.4:-38975332 | None:intergenic |
| CCCTTTATCATCCATTTACA+TGG | 0.371480 | 1.4:+38975331 | MS.gene065600:CDS |
| AGTATTGTGATGTTATTAAG+AGG | 0.375155 | 1.4:+38975151 | MS.gene065600:CDS |
| TATAGGTGTAGCCAAATTAT+GGG | 0.399258 | 1.4:+38974328 | None:intergenic |
| TTCTCTGATCCATTCCCAAT+TGG | 0.433325 | 1.4:-38975107 | None:intergenic |
| ATAGGCCGACATCTGCCAAT+TGG | 0.434224 | 1.4:+38975092 | MS.gene065600:intron |
| CCATGTAAATGGATGATAAA+GGG | 0.439796 | 1.4:-38975331 | None:intergenic |
| TTGGAAATATGCAGCCTGTA+AGG | 0.446216 | 1.4:+38977128 | MS.gene065600:intron |
| CATACATGGATAGAATATTT+GGG | 0.452640 | 1.4:-38974380 | None:intergenic |
| TTAAATATCTTATCTTACCT+TGG | 0.454939 | 1.4:+38975762 | MS.gene065600:CDS |
| TAGGCCGACATCTGCCAATT+GGG | 0.459139 | 1.4:+38975093 | MS.gene065600:intron |
| ACATCCAGCTGACCTTAAAC+CGG | 0.474408 | 1.4:+38976039 | MS.gene065600:CDS |
| ATGTCAGCACACTGCATACA+TGG | 0.480237 | 1.4:-38974394 | None:intergenic |
| TCTATAATCAACACATTACT+TGG | 0.482569 | 1.4:-38977323 | None:intergenic |
| TCTTGCCCTTGTTGTAGACC+AGG | 0.488474 | 1.4:-38975290 | None:intergenic |
| TTTCCTTCCACAATCTTTGG+CGG | 0.490487 | 1.4:-38975722 | None:intergenic |
| TTCAATGACTTCGACAAAGC+CGG | 0.497005 | 1.4:-38976058 | None:intergenic |
| GTGGAGCGTAATGCAGATAA+TGG | 0.504803 | 1.4:+38975800 | MS.gene065600:CDS |
| TTCCTTCCACAATCTTTGGC+GGG | 0.512138 | 1.4:-38975721 | None:intergenic |
| TGTGGAAGGAAACCCATGCT+TGG | 0.518682 | 1.4:+38975733 | MS.gene065600:CDS |
| TATTTAATGTACTCCAAGCA+TGG | 0.526777 | 1.4:-38975746 | None:intergenic |
| AATAACATCACAATACTCTC+TGG | 0.528355 | 1.4:-38975145 | None:intergenic |
| ATTTAATGTACTCCAAGCAT+GGG | 0.531281 | 1.4:-38975745 | None:intergenic |
| CGACATCTGCCAATTGGGAA+TGG | 0.537270 | 1.4:+38975098 | MS.gene065600:CDS |
| AAAGCCGGTTTAAGGTCAGC+TGG | 0.544325 | 1.4:-38976043 | None:intergenic |
| CATTTACATGGAGGATGAAG+AGG | 0.563565 | 1.4:+38975343 | MS.gene065600:CDS |
| TAACTCTCCGCTTTCATAGT+CGG | 0.564786 | 1.4:-38976017 | None:intergenic |
| TTACGGTGTGATAAGATGAC+GGG | 0.572281 | 1.4:-38975183 | None:intergenic |
| CATTCCCAATTGGCAGATGT+CGG | 0.585557 | 1.4:-38975097 | None:intergenic |
| ATGTTACCTGGTCTACAACA+AGG | 0.591222 | 1.4:+38975284 | MS.gene065600:CDS |
| TGCCCGCCAAAGATTGTGGA+AGG | 0.597557 | 1.4:+38975719 | MS.gene065600:CDS |
| ATATTGCCCGCCAAAGATTG+TGG | 0.598009 | 1.4:+38975715 | MS.gene065600:CDS |
| GTCATTGAATAAAATTCTAG+AGG | 0.600216 | 1.4:+38976072 | MS.gene065600:CDS |
| ATTACGGTGTGATAAGATGA+CGG | 0.622032 | 1.4:-38975184 | None:intergenic |
| TTGATTGCCGACTATGAAAG+CGG | 0.628637 | 1.4:+38976010 | MS.gene065600:CDS |
| TGTTACCTGGTCTACAACAA+GGG | 0.634319 | 1.4:+38975285 | MS.gene065600:CDS |
| TTTATCATCCATTTACATGG+AGG | 0.642941 | 1.4:+38975334 | MS.gene065600:CDS |
| TTGGTTTAACGAGTTTACTG+TGG | 0.643574 | 1.4:+38975781 | MS.gene065600:CDS |
| GGTGTAGCCAAATTATGGGA+CGG | 0.659015 | 1.4:+38974332 | None:intergenic |
| ACAGTAAACTCGTTAAACCA+AGG | 0.685168 | 1.4:-38975779 | None:intergenic |
| GAGCGTAATGCAGATAATGG+TGG | 0.730139 | 1.4:+38975803 | MS.gene065600:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAAAATTAATATCATC+TGG | - | chr1.4:38974960-38974979 | None:intergenic | 10.0% |
| !! | AATTTAAAAATTTAATGTGA+TGG | + | chr1.4:38976238-38976257 | MS.gene065600:intron | 10.0% |
| !! | TCTTCAAAAAAAAAATAAAA+AGG | + | chr1.4:38976727-38976746 | MS.gene065600:intron | 10.0% |
| !!! | AAAAAAAAGTATAAAATAGA+AGG | + | chr1.4:38976629-38976648 | MS.gene065600:intron | 10.0% |
| !!! | GAATATTTTTATCTTAAAAT+AGG | + | chr1.4:38975074-38975093 | MS.gene065600:intron | 10.0% |
| !!! | GATTTCTTTTAAAAATTAAA+AGG | - | chr1.4:38976137-38976156 | None:intergenic | 10.0% |
| !!! | TCTATTTTATACTTTTTTTT+CGG | - | chr1.4:38976629-38976648 | None:intergenic | 10.0% |
| !! | AAAATCTAGTTGTTATAATA+AGG | - | chr1.4:38976460-38976479 | None:intergenic | 15.0% |
| !! | ACATTTAGTAAACAAATTAT+AGG | - | chr1.4:38977101-38977120 | None:intergenic | 15.0% |
| !! | ATGCAATATATAATAGTTAA+CGG | + | chr1.4:38976534-38976553 | MS.gene065600:intron | 15.0% |
| !! | CGTAACAAAATTAATAAATA+AGG | + | chr1.4:38976869-38976888 | MS.gene065600:intron | 15.0% |
| !! | TAAATTTGTCATTACTAAAA+AGG | + | chr1.4:38975386-38975405 | MS.gene065600:intron | 15.0% |
| !!! | TGTGAAATTTTCTTATAAAT+AGG | - | chr1.4:38976916-38976935 | None:intergenic | 15.0% |
| !!! | TTCTTTTAAAAATTAAAAGG+AGG | - | chr1.4:38976134-38976153 | None:intergenic | 15.0% |
| !! | AAAAAAAATAAAAAGGCAAG+AGG | + | chr1.4:38976734-38976753 | MS.gene065600:intron | 20.0% |
| !! | AAAACAAAACATAACTAGAT+AGG | - | chr1.4:38975426-38975445 | None:intergenic | 20.0% |
| !! | AAACTATAAGAAACTAAGAT+GGG | - | chr1.4:38974918-38974937 | None:intergenic | 20.0% |
| !! | AATGCAAGCATTAATATATA+GGG | - | chr1.4:38974449-38974468 | None:intergenic | 20.0% |
| !! | ACTATCAAAGAAATAAATGA+AGG | + | chr1.4:38974576-38974595 | MS.gene065600:intron | 20.0% |
| !! | AGTGAATGTGAAAATAAAAA+AGG | + | chr1.4:38975691-38975710 | MS.gene065600:CDS | 20.0% |
| !! | GAAACTACTACTATTATAAA+TGG | - | chr1.4:38975872-38975891 | None:intergenic | 20.0% |
| !! | TATATATAACCAAGTTTACA+TGG | + | chr1.4:38976591-38976610 | MS.gene065600:intron | 20.0% |
| !! | TTAAATATCTTATCTTACCT+TGG | + | chr1.4:38975762-38975781 | MS.gene065600:CDS | 20.0% |
| !!! | AACAAACTTTGAGAAAATTA+TGG | + | chr1.4:38974671-38974690 | MS.gene065600:intron | 20.0% |
| !!! | AATAGGATCAACAAAATTTT+TGG | - | chr1.4:38976899-38976918 | None:intergenic | 20.0% |
| !!! | AGAAAATTTCACAACTTTTA+CGG | + | chr1.4:38976923-38976942 | MS.gene065600:intron | 20.0% |
| !!! | ATTTTGAATGAAGGAATAAA+AGG | + | chr1.4:38975522-38975541 | MS.gene065600:intron | 20.0% |
| !!! | CAGAAAAATATTTTGAATGA+AGG | + | chr1.4:38975513-38975532 | MS.gene065600:intron | 20.0% |
| !!! | GTATTTTACATGTGTTTTTA+AGG | + | chr1.4:38977033-38977052 | MS.gene065600:intron | 20.0% |
| !!! | TATTTTTCTAATTCTAAACG+AGG | - | chr1.4:38977210-38977229 | None:intergenic | 20.0% |
| !!! | TGTGATTTTATATAAGATTG+TGG | + | chr1.4:38975546-38975565 | MS.gene065600:intron | 20.0% |
| !!! | TTTACTAAATGTTTGTTTCT+TGG | + | chr1.4:38977109-38977128 | MS.gene065600:intron | 20.0% |
| !!! | TTTTATTTTCACATTCACTT+CGG | - | chr1.4:38975690-38975709 | None:intergenic | 20.0% |
| !!! | TTTTTTAGATGGAATTTGTT+AGG | + | chr1.4:38976783-38976802 | MS.gene065600:intron | 20.0% |
| ! | AAAAACCATGTATTCATGTA+TGG | - | chr1.4:38974770-38974789 | None:intergenic | 25.0% |
| ! | AAACTTAGGTAAAATTCCTT+AGG | - | chr1.4:38974744-38974763 | None:intergenic | 25.0% |
| ! | AAACTTAGGTACAATTCTTT+AGG | + | chr1.4:38974602-38974621 | MS.gene065600:intron | 25.0% |
| ! | AAGCATTAATATATAGGGAA+AGG | - | chr1.4:38974444-38974463 | None:intergenic | 25.0% |
| ! | AATGAAAATCTTTACCAGAA+AGG | - | chr1.4:38975581-38975600 | None:intergenic | 25.0% |
| ! | AGCATTAATATATAGGGAAA+GGG | - | chr1.4:38974443-38974462 | None:intergenic | 25.0% |
| ! | AGTAATATCGGAAAAATAGT+GGG | + | chr1.4:38976949-38976968 | MS.gene065600:intron | 25.0% |
| ! | AGTATTGTGATGTTATTAAG+AGG | + | chr1.4:38975151-38975170 | MS.gene065600:CDS | 25.0% |
| ! | ATAAATGAAGGACAAAACTT+AGG | + | chr1.4:38974588-38974607 | MS.gene065600:intron | 25.0% |
| ! | ATCTCTACTATAAATGTACT+AGG | + | chr1.4:38976154-38976173 | MS.gene065600:intron | 25.0% |
| ! | ATTCAAAATGAGGAAATAGA+AGG | - | chr1.4:38975841-38975860 | None:intergenic | 25.0% |
| ! | CAATGCAAGCATTAATATAT+AGG | - | chr1.4:38974450-38974469 | None:intergenic | 25.0% |
| ! | CATACATGGATAGAATATTT+GGG | - | chr1.4:38974383-38974402 | None:intergenic | 25.0% |
| ! | GAAACTATAAGAAACTAAGA+TGG | - | chr1.4:38974919-38974938 | None:intergenic | 25.0% |
| ! | GATTCTTGTATTCAATTGTT+TGG | + | chr1.4:38975933-38975952 | MS.gene065600:intron | 25.0% |
| ! | GGTTATATATACTTGAACTA+TGG | - | chr1.4:38976582-38976601 | None:intergenic | 25.0% |
| ! | GTCATTGAATAAAATTCTAG+AGG | + | chr1.4:38976072-38976091 | MS.gene065600:CDS | 25.0% |
| ! | TAGTAATATCGGAAAAATAG+TGG | + | chr1.4:38976948-38976967 | MS.gene065600:intron | 25.0% |
| ! | TTAATTAGTATACACCATCA+GGG | + | chr1.4:38976285-38976304 | MS.gene065600:intron | 25.0% |
| ! | TTATGGATTTGATGAAATCA+TGG | + | chr1.4:38974688-38974707 | MS.gene065600:intron | 25.0% |
| ! | TTCATGCTTTCATTCTATTT+AGG | + | chr1.4:38975966-38975985 | MS.gene065600:intron | 25.0% |
| ! | TTCATGTATGGAAAAAACTT+AGG | - | chr1.4:38974758-38974777 | None:intergenic | 25.0% |
| !! | AACTAAAAATACCCTTTTGT+TGG | + | chr1.4:38974644-38974663 | MS.gene065600:intron | 25.0% |
| !! | TGATGGTGTATACTAATTAA+GGG | - | chr1.4:38976285-38976304 | None:intergenic | 25.0% |
| !! | TTTTTCCATACATGAATACA+TGG | + | chr1.4:38974762-38974781 | MS.gene065600:intron | 25.0% |
| !!! | TGTTTCTAGTTATAAGTTAG+CGG | + | chr1.4:38976983-38977002 | MS.gene065600:intron | 25.0% |
| !!! | TTAGAAAAGCAATTTTCAAG+TGG | + | chr1.4:38977068-38977087 | MS.gene065600:intron | 25.0% |
| AAAGATGCATAAACATAACC+AGG | - | chr1.4:38976106-38976125 | None:intergenic | 30.0% | |
| AACCTAATAAAGCAAATGAG+CGG | + | chr1.4:38976819-38976838 | MS.gene065600:intron | 30.0% | |
| AATAACATCACAATACTCTC+TGG | - | chr1.4:38975148-38975167 | None:intergenic | 30.0% | |
| ACCAAGTTTACATGGAAATT+AGG | + | chr1.4:38976599-38976618 | MS.gene065600:intron | 30.0% | |
| ATTTAATGTACTCCAAGCAT+GGG | - | chr1.4:38975748-38975767 | None:intergenic | 30.0% | |
| CAAGAGGATAGAAATGAAAT+TGG | + | chr1.4:38976750-38976769 | MS.gene065600:intron | 30.0% | |
| CCAAGTTTACATGGAAATTA+GGG | + | chr1.4:38976600-38976619 | MS.gene065600:intron | 30.0% | |
| CCATGTAAATGGATGATAAA+GGG | - | chr1.4:38975334-38975353 | None:intergenic | 30.0% | |
| CTTAATTAGTATACACCATC+AGG | + | chr1.4:38976284-38976303 | MS.gene065600:intron | 30.0% | |
| GACTAAACTGAATTTGTCTT+TGG | + | chr1.4:38977280-38977299 | MS.gene065600:intron | 30.0% | |
| GACTGTTCAATCTTTGTATT+TGG | + | chr1.4:38975654-38975673 | MS.gene065600:intron | 30.0% | |
| GCATACATGGATAGAATATT+TGG | - | chr1.4:38974384-38974403 | None:intergenic | 30.0% | |
| GGAACTTGAAATTCAAAATG+AGG | - | chr1.4:38975851-38975870 | None:intergenic | 30.0% | |
| GTTTGTTCTATCCAACAAAA+GGG | - | chr1.4:38974658-38974677 | None:intergenic | 30.0% | |
| TAATTAGTATACACCATCAG+GGG | + | chr1.4:38976286-38976305 | MS.gene065600:intron | 30.0% | |
| TACAGTTAATAACACATCCA+AGG | - | chr1.4:38974844-38974863 | None:intergenic | 30.0% | |
| TATTTAATGTACTCCAAGCA+TGG | - | chr1.4:38975749-38975768 | None:intergenic | 30.0% | |
| TCCATGTAAATGGATGATAA+AGG | - | chr1.4:38975335-38975354 | None:intergenic | 30.0% | |
| TCTTTGTATTTGGATATCAC+AGG | + | chr1.4:38975664-38975683 | MS.gene065600:intron | 30.0% | |
| TGCAATGTTAGTTGTGAAAA+TGG | + | chr1.4:38974789-38974808 | MS.gene065600:intron | 30.0% | |
| TTATAGAATGATGTCCTTGT+AGG | + | chr1.4:38974525-38974544 | MS.gene065600:intron | 30.0% | |
| TTGTTATAATAAGGACCAGA+GGG | - | chr1.4:38976451-38976470 | None:intergenic | 30.0% | |
| TTTATCATCCATTTACATGG+AGG | + | chr1.4:38975334-38975353 | MS.gene065600:CDS | 30.0% | |
| ! | AATTTCAAGTGTTCTGTTCT+TGG | + | chr1.4:38974887-38974906 | MS.gene065600:intron | 30.0% |
| ! | AGTTTGTTCTATCCAACAAA+AGG | - | chr1.4:38974659-38974678 | None:intergenic | 30.0% |
| ! | CAGAATTGTCTTATTCGTAT+TGG | + | chr1.4:38976194-38976213 | MS.gene065600:intron | 30.0% |
| ! | CTGATGGTGTATACTAATTA+AGG | - | chr1.4:38976286-38976305 | None:intergenic | 30.0% |
| ! | CTTTTACGGTGTAGTAATAT+CGG | + | chr1.4:38976937-38976956 | MS.gene065600:intron | 30.0% |
| !! | TTTTAATTAAATACCCCCTC+TGG | + | chr1.4:38976433-38976452 | MS.gene065600:intron | 30.0% |
| AAATACTTAAATGCCCTCAG+CGG | - | chr1.4:38977019-38977038 | None:intergenic | 35.0% | |
| ACAGTAAACTCGTTAAACCA+AGG | - | chr1.4:38975782-38975801 | None:intergenic | 35.0% | |
| ACCTAATAAAGCAAATGAGC+GGG | + | chr1.4:38976820-38976839 | MS.gene065600:intron | 35.0% | |
| AGAGCTACTAAAAAGAGTCA+AGG | + | chr1.4:38977180-38977199 | MS.gene065600:CDS | 35.0% | |
| AGTAGTTTCCTAAACCATTC+TGG | + | chr1.4:38975883-38975902 | MS.gene065600:intron | 35.0% | |
| ATTACGGTGTGATAAGATGA+CGG | - | chr1.4:38975187-38975206 | None:intergenic | 35.0% | |
| CAAATGAGCGGGAAAAAATT+AGG | + | chr1.4:38976831-38976850 | MS.gene065600:intron | 35.0% | |
| CCCTAATTTCCATGTAAACT+TGG | - | chr1.4:38976603-38976622 | None:intergenic | 35.0% | |
| CCCTTTATCATCCATTTACA+TGG | + | chr1.4:38975331-38975350 | MS.gene065600:CDS | 35.0% | |
| GAAAGGAAATCTGGAGATTA+CGG | - | chr1.4:38975203-38975222 | None:intergenic | 35.0% | |
| GTCACTTACTAATTGATCCT+CGG | + | chr1.4:38975248-38975267 | MS.gene065600:intron | 35.0% | |
| GTTGTTATAATAAGGACCAG+AGG | - | chr1.4:38976452-38976471 | None:intergenic | 35.0% | |
| TCACTTACTAATTGATCCTC+GGG | + | chr1.4:38975249-38975268 | MS.gene065600:intron | 35.0% | |
| TCCAATATACACTAGCTGAA+AGG | - | chr1.4:38975220-38975239 | None:intergenic | 35.0% | |
| TCCTTTCAGCTAGTGTATAT+TGG | + | chr1.4:38975216-38975235 | MS.gene065600:intron | 35.0% | |
| TGTGGCTATTTATTCCTTTC+TGG | + | chr1.4:38975564-38975583 | MS.gene065600:intron | 35.0% | |
| TGTTATAATAAGGACCAGAG+GGG | - | chr1.4:38976450-38976469 | None:intergenic | 35.0% | |
| TTGGTTTAACGAGTTTACTG+TGG | + | chr1.4:38975781-38975800 | MS.gene065600:CDS | 35.0% | |
| ! | AAGGGTTTGTTTGGTTCAAA+CGG | + | chr1.4:38976366-38976385 | MS.gene065600:intron | 35.0% |
| ! | ATTCTAGAGGTAATGTTTCC+TGG | + | chr1.4:38976085-38976104 | MS.gene065600:intron | 35.0% |
| ! | TAGAGATTTTCATGGAAGGT+GGG | + | chr1.4:38976393-38976412 | MS.gene065600:intron | 35.0% |
| ! | TATCGGAAAAATAGTGGGAA+TGG | + | chr1.4:38976954-38976973 | MS.gene065600:intron | 35.0% |
| ! | TGATTTTCAGACATGTTACC+TGG | + | chr1.4:38975272-38975291 | MS.gene065600:intron | 35.0% |
| !! | TGAATTTGTCTTTGGTTTGC+AGG | + | chr1.4:38977288-38977307 | MS.gene065600:intron | 35.0% |
| !! | TTGTGCTGTTTATTATGTCC+TGG | + | chr1.4:38975002-38975021 | MS.gene065600:intron | 35.0% |
| !!! | AAGCAATTTTCAAGTGGCAT+TGG | + | chr1.4:38977074-38977093 | MS.gene065600:intron | 35.0% |
| !!! | GTGCGATGCATTTTTTTAGA+TGG | + | chr1.4:38976772-38976791 | MS.gene065600:intron | 35.0% |
| !!! | TGCTGACATTTTTTTCCTCA+AGG | + | chr1.4:38974408-38974427 | MS.gene065600:CDS | 35.0% |
| !!! | TTTTTGAAGTGTTGCCTTAC+AGG | - | chr1.4:38977145-38977164 | None:intergenic | 35.0% |
| ACAAACCCTTAGTCGTCTTT+CGG | - | chr1.4:38976356-38976375 | None:intergenic | 40.0% | |
| ACACTAGCTGAAAGGAAATC+TGG | - | chr1.4:38975212-38975231 | None:intergenic | 40.0% | |
| ATGATAGATGTTCACAGCCT+TGG | + | chr1.4:38974824-38974843 | MS.gene065600:intron | 40.0% | |
| ATGTTACCTGGTCTACAACA+AGG | + | chr1.4:38975284-38975303 | MS.gene065600:CDS | 40.0% | |
| CATTTACATGGAGGATGAAG+AGG | + | chr1.4:38975343-38975362 | MS.gene065600:CDS | 40.0% | |
| CTCTTCATCCTCCATGTAAA+TGG | - | chr1.4:38975345-38975364 | None:intergenic | 40.0% | |
| GAAGAGGTAAGCTGCTAAAA+GGG | + | chr1.4:38975359-38975378 | MS.gene065600:intron | 40.0% | |
| GTTAACCGAAAGACGACTAA+GGG | + | chr1.4:38976348-38976367 | MS.gene065600:intron | 40.0% | |
| GTTATAATAAGGACCAGAGG+GGG | - | chr1.4:38976449-38976468 | None:intergenic | 40.0% | |
| GTTTCCTAAACCATTCTGGT+TGG | + | chr1.4:38975887-38975906 | MS.gene065600:intron | 40.0% | |
| TAACTCTCCGCTTTCATAGT+CGG | - | chr1.4:38976020-38976039 | None:intergenic | 40.0% | |
| TGAAGAGGTAAGCTGCTAAA+AGG | + | chr1.4:38975358-38975377 | MS.gene065600:intron | 40.0% | |
| TGTTAACCGAAAGACGACTA+AGG | + | chr1.4:38976347-38976366 | MS.gene065600:intron | 40.0% | |
| TGTTACCTGGTCTACAACAA+GGG | + | chr1.4:38975285-38975304 | MS.gene065600:CDS | 40.0% | |
| TTACGGTGTGATAAGATGAC+GGG | - | chr1.4:38975186-38975205 | None:intergenic | 40.0% | |
| TTCAATGACTTCGACAAAGC+CGG | - | chr1.4:38976061-38976080 | None:intergenic | 40.0% | |
| TTCTCTGATCCATTCCCAAT+TGG | - | chr1.4:38975110-38975129 | None:intergenic | 40.0% | |
| TTGGAAATATGCAGCCTGTA+AGG | + | chr1.4:38977128-38977147 | MS.gene065600:intron | 40.0% | |
| TTTCCTTCCACAATCTTTGG+CGG | - | chr1.4:38975725-38975744 | None:intergenic | 40.0% | |
| ! | AAGACGACTAAGGGTTTGTT+TGG | + | chr1.4:38976357-38976376 | MS.gene065600:intron | 40.0% |
| ! | AGAGATTTTCATGGAAGGTG+GGG | + | chr1.4:38976394-38976413 | MS.gene065600:intron | 40.0% |
| ! | AGGGTAGAGATTTTCATGGA+AGG | + | chr1.4:38976389-38976408 | MS.gene065600:intron | 40.0% |
| ! | GTAGAGATTTTCATGGAAGG+TGG | + | chr1.4:38976392-38976411 | MS.gene065600:intron | 40.0% |
| ! | GTTTGTTTGGTTCAAACGGA+GGG | + | chr1.4:38976370-38976389 | MS.gene065600:intron | 40.0% |
| ! | TCCCGCTCATTTGCTTTATT+AGG | - | chr1.4:38976824-38976843 | None:intergenic | 40.0% |
| ! | TTCCTTAGGTGCTTTTCGTA+TGG | - | chr1.4:38974730-38974749 | None:intergenic | 40.0% |
| ! | TTGATTGCCGACTATGAAAG+CGG | + | chr1.4:38976010-38976029 | MS.gene065600:CDS | 40.0% |
| !! | AACCATACGAAAAGCACCTA+AGG | + | chr1.4:38974725-38974744 | MS.gene065600:intron | 40.0% |
| AAAGGGTGAACTTCACCTTG+AGG | - | chr1.4:38974426-38974445 | None:intergenic | 45.0% | |
| ACATCCAGCTGACCTTAAAC+CGG | + | chr1.4:38976039-38976058 | MS.gene065600:CDS | 45.0% | |
| ACATCCATCACAAGCCTACA+AGG | - | chr1.4:38974542-38974561 | None:intergenic | 45.0% | |
| ACATGTCTGAAAATCACCCG+AGG | - | chr1.4:38975268-38975287 | None:intergenic | 45.0% | |
| ATATTGCCCGCCAAAGATTG+TGG | + | chr1.4:38975715-38975734 | MS.gene065600:CDS | 45.0% | |
| ATGGAAGGTGGGGTAAAAGA+GGG | + | chr1.4:38976404-38976423 | MS.gene065600:intron | 45.0% | |
| ATGTCAGCACACTGCATACA+TGG | - | chr1.4:38974397-38974416 | None:intergenic | 45.0% | |
| ATGTCCTTGTAGGCTTGTGA+TGG | + | chr1.4:38974535-38974554 | MS.gene065600:intron | 45.0% | |
| CATTCCCAATTGGCAGATGT+CGG | - | chr1.4:38975100-38975119 | None:intergenic | 45.0% | |
| CCCTTTACAATAAACCCGAG+CGG | - | chr1.4:38976494-38976513 | None:intergenic | 45.0% | |
| CCGCTCGGGTTTATTGTAAA+GGG | + | chr1.4:38976491-38976510 | MS.gene065600:intron | 45.0% | |
| GAAGCCAACCAGAATGGTTT+AGG | - | chr1.4:38975894-38975913 | None:intergenic | 45.0% | |
| GGGTTTCCTTCCACAATCTT+TGG | - | chr1.4:38975728-38975747 | None:intergenic | 45.0% | |
| GTGGAGCGTAATGCAGATAA+TGG | + | chr1.4:38975800-38975819 | MS.gene065600:CDS | 45.0% | |
| GTTCACTCCGTCCCATAATT+TGG | - | chr1.4:38974342-38974361 | None:intergenic | 45.0% | |
| TCCGCTCGGGTTTATTGTAA+AGG | + | chr1.4:38976490-38976509 | MS.gene065600:intron | 45.0% | |
| TGACAACTACAGATGAAGCC+AGG | - | chr1.4:38975023-38975042 | None:intergenic | 45.0% | |
| TTCCTTCCACAATCTTTGGC+GGG | - | chr1.4:38975724-38975743 | None:intergenic | 45.0% | |
| ! | ACGGAGGGTAGAGATTTTCA+TGG | + | chr1.4:38976385-38976404 | MS.gene065600:intron | 45.0% |
| ! | ACTTCGACAAAGCCGGTTTA+AGG | - | chr1.4:38976054-38976073 | None:intergenic | 45.0% |
| ! | GAGCGTAATGCAGATAATGG+TGG | + | chr1.4:38975803-38975822 | MS.gene065600:CDS | 45.0% |
| ! | GGTTTGTTTGGTTCAAACGG+AGG | + | chr1.4:38976369-38976388 | MS.gene065600:intron | 45.0% |
| ATAGGCCGACATCTGCCAAT+TGG | + | chr1.4:38975092-38975111 | MS.gene065600:intron | 50.0% | |
| CAGACTGAAGCCAACCAGAA+TGG | - | chr1.4:38975900-38975919 | None:intergenic | 50.0% | |
| CATGGAAGGTGGGGTAAAAG+AGG | + | chr1.4:38976403-38976422 | MS.gene065600:intron | 50.0% | |
| CGACATCTGCCAATTGGGAA+TGG | + | chr1.4:38975098-38975117 | MS.gene065600:CDS | 50.0% | |
| CGGTAGTTAACTACCGCTGA+GGG | + | chr1.4:38977003-38977022 | MS.gene065600:intron | 50.0% | |
| TAGGCCGACATCTGCCAATT+GGG | + | chr1.4:38975093-38975112 | MS.gene065600:intron | 50.0% | |
| TGGAAGGTGGGGTAAAAGAG+GGG | + | chr1.4:38976405-38976424 | MS.gene065600:intron | 50.0% | |
| TGTGGAAGGAAACCCATGCT+TGG | + | chr1.4:38975733-38975752 | MS.gene065600:CDS | 50.0% | |
| ! | AAAGCCGGTTTAAGGTCAGC+TGG | - | chr1.4:38976046-38976065 | None:intergenic | 50.0% |
| ! | TCTTGCCCTTGTTGTAGACC+AGG | - | chr1.4:38975293-38975312 | None:intergenic | 50.0% |
| AAGGTGGGGTAAAAGAGGGG+AGG | + | chr1.4:38976408-38976427 | MS.gene065600:intron | 55.0% | |
| AATAAACCCGAGCGGAGCAC+GGG | - | chr1.4:38976486-38976505 | None:intergenic | 55.0% | |
| CAATAAACCCGAGCGGAGCA+CGG | - | chr1.4:38976487-38976506 | None:intergenic | 55.0% | |
| GCGGTAGTTAACTACCGCTG+AGG | + | chr1.4:38977002-38977021 | MS.gene065600:intron | 55.0% | |
| TGCCCGCCAAAGATTGTGGA+AGG | + | chr1.4:38975719-38975738 | MS.gene065600:CDS | 55.0% | |
| ! | TTTTTGACCCGTGCTCCGCT+CGG | + | chr1.4:38976476-38976495 | MS.gene065600:intron | 55.0% |
| !! | TTCCTCTAGCTCTCCCCTGA+TGG | - | chr1.4:38976302-38976321 | None:intergenic | 55.0% |
| CACCATCAGGGGAGAGCTAG+AGG | + | chr1.4:38976297-38976316 | MS.gene065600:intron | 60.0% | |
| ! | TTTTGACCCGTGCTCCGCTC+GGG | + | chr1.4:38976477-38976496 | MS.gene065600:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 38974333 | 38977330 | 38974333 | ID=MS.gene065600 |
| chr1.4 | mRNA | 38974333 | 38977330 | 38974333 | ID=MS.gene065600.t1;Parent=MS.gene065600 |
| chr1.4 | exon | 38974333 | 38974429 | 38974333 | ID=MS.gene065600.t1.exon1;Parent=MS.gene065600.t1 |
| chr1.4 | CDS | 38974333 | 38974429 | 38974333 | ID=cds.MS.gene065600.t1;Parent=MS.gene065600.t1 |
| chr1.4 | exon | 38975096 | 38975201 | 38975096 | ID=MS.gene065600.t1.exon2;Parent=MS.gene065600.t1 |
| chr1.4 | CDS | 38975096 | 38975201 | 38975096 | ID=cds.MS.gene065600.t1;Parent=MS.gene065600.t1 |
| chr1.4 | exon | 38975282 | 38975364 | 38975282 | ID=MS.gene065600.t1.exon3;Parent=MS.gene065600.t1 |
| chr1.4 | CDS | 38975282 | 38975364 | 38975282 | ID=cds.MS.gene065600.t1;Parent=MS.gene065600.t1 |
| chr1.4 | exon | 38975686 | 38975831 | 38975686 | ID=MS.gene065600.t1.exon4;Parent=MS.gene065600.t1 |
| chr1.4 | CDS | 38975686 | 38975831 | 38975686 | ID=cds.MS.gene065600.t1;Parent=MS.gene065600.t1 |
| chr1.4 | exon | 38975988 | 38976093 | 38975988 | ID=MS.gene065600.t1.exon5;Parent=MS.gene065600.t1 |
| chr1.4 | CDS | 38975988 | 38976093 | 38975988 | ID=cds.MS.gene065600.t1;Parent=MS.gene065600.t1 |
| chr1.4 | exon | 38977142 | 38977201 | 38977142 | ID=MS.gene065600.t1.exon6;Parent=MS.gene065600.t1 |
| chr1.4 | CDS | 38977142 | 38977201 | 38977142 | ID=cds.MS.gene065600.t1;Parent=MS.gene065600.t1 |
| chr1.4 | exon | 38977310 | 38977330 | 38977310 | ID=MS.gene065600.t1.exon7;Parent=MS.gene065600.t1 |
| chr1.4 | CDS | 38977310 | 38977330 | 38977310 | ID=cds.MS.gene065600.t1;Parent=MS.gene065600.t1 |
| Gene Sequence |
| Protein sequence |
