AlfalfaGEDB | MS.gene052947

M. sativa cultivar XinJiangDaYe / MS.gene052947

KEGG: K02922
GO: GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0019538 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0071704 GO:0110165 GO:1901564 GO:1901566 GO:1901576
PFAM: PF01907.22

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene052947.t1	XP_013442541.1	100	95	0	0	1	95	1	95	6.50E-46	193

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene052947.t1	Q43292	89.4	94	10	0	1	94	1	94	2.2e-42	172.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene052947.t1	G7JJE2	100.0	95	0	0	1	95	1	95	4.7e-46	193.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049255	MS.gene052947	0.833822	4.28E-56	-1.69E-46
MS.gene049341	MS.gene052947	0.824115	9.61E-54	-1.69E-46
MS.gene049580	MS.gene052947	0.827485	1.52E-54	-1.69E-46
MS.gene049821	MS.gene052947	0.830535	2.78E-55	-1.69E-46
MS.gene049825	MS.gene052947	0.813017	3.17E-51	-1.69E-46
MS.gene049887	MS.gene052947	0.800813	1.21E-48	-1.69E-46
MS.gene050277	MS.gene052947	0.877867	4.45E-69	-1.69E-46
MS.gene050303	MS.gene052947	0.817556	3.10E-52	-1.69E-46
MS.gene050320	MS.gene052947	0.803968	2.71E-49	-1.69E-46
MS.gene050437	MS.gene052947	0.803039	4.22E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene052947	MS.gene33384	PPI
MS.gene052947	MS.gene85108	PPI
MS.gene052947	MS.gene24930	PPI
MS.gene052947	MS.gene068255	PPI
MS.gene052947	MS.gene36310	PPI
MS.gene052947	MS.gene85110	PPI
MS.gene052947	MS.gene47819	PPI
MS.gene33384	MS.gene052947	PPI
MS.gene47819	MS.gene052947	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene052947.t1	MTR_0147s0070	100.000	95	0	0	1	95	1	95	3.99e-65	191
MS.gene052947.t1	MTR_2g101900	96.809	94	3	0	1	94	1	94	1.39e-62	184

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene052947.t1	AT1G52300	89.362	94	10	1	94	1	94	1.65e-57	172
MS.gene052947.t1	AT3G16080	88.298	94	11	1	94	1	94	4.05e-57	171
MS.gene052947.t1	AT1G15250	87.368	95	12	1	95	1	95	7.25e-57	170
MS.gene052947.t1	AT1G15250	87.368	95	12	1	95	1	95	7.25e-57	170
MS.gene052947.t1	AT3G16080	93.333	45	3	1	45	1	45	9.42e-25	89.0

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Find 29 sgRNAs with CRISPR-Local

Find 77 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AATCCACTCTTGAATCTGCG+AGG	0.695196	4.1:+83525851	None:intergenic
ACACCTAACACAGAGTGTGT+GGG	0.685746	4.1:+83526193	None:intergenic
ACTGGAGTGAGAAGGCTATT+AGG	0.322324	4.1:-83525919	MS.gene052947:CDS
AGACCCACACACTCTGTGTT+AGG	0.433282	4.1:-83526196	MS.gene052947:CDS
AGCAGCGACTCTTCTGGAGA+TGG	0.555977	4.1:+83526156	None:intergenic
AGCAGCTGCTCCCTTGTTCC+TGG	0.247813	4.1:+83524856	None:intergenic
AGGAGAAAGACCACTGGAAC+TGG	0.467139	4.1:-83525899	MS.gene052947:CDS
ATGCTGAGCAGCGACTCTTC+TGG	0.400063	4.1:+83526150	None:intergenic
ATTGTGTGATTTCAGATAAC+TGG	0.324608	4.1:-83525937	MS.gene052947:intron
ATTTCCTGACACGTGCAGCT+GGG	0.610760	4.1:+83526120	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATTTAGATCAGTTGGATCT+TGG	-	chr4.1:83526022-83526041	MS.gene052947:intron	30.0%
ATTGTGTGATTTCAGATAAC+TGG	-	chr4.1:83525266-83525285	MS.gene052947:intron	30.0%
ATAAGCTGAATATCCAATGC+AGG	+	chr4.1:83525767-83525786	None:intergenic	35.0%
GATCTAAATTAGAACCTGCA+TGG	+	chr4.1:83526012-83526031	None:intergenic	35.0%
GTGCTAGAAAAACTAAACAC+AGG	+	chr4.1:83525409-83525428	None:intergenic	35.0%
TAAGCTGAATATCCAATGCA+GGG	+	chr4.1:83525766-83525785	None:intergenic	35.0%
TCAGACACTGTAATGAAACT+GGG	+	chr4.1:83524925-83524944	None:intergenic	35.0%
TTAGGTGTAGCAACTTTCTT+GGG	-	chr4.1:83525705-83525724	MS.gene052947:intron	35.0%
TTCAGACACTGTAATGAAAC+TGG	+	chr4.1:83524926-83524945	None:intergenic	35.0%
TTTAGGTGTAGCAACTTTCT+TGG	-	chr4.1:83525704-83525723	MS.gene052947:intron	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.1	gene	83524847	83526378	83524847	ID=MS.gene052947
chr4.1	mRNA	83524847	83526378	83524847	ID=MS.gene052947.t1;Parent=MS.gene052947
chr4.1	exon	83526376	83526378	83526376	ID=MS.gene052947.t1.exon1;Parent=MS.gene052947.t1
chr4.1	CDS	83526376	83526378	83526376	ID=cds.MS.gene052947.t1;Parent=MS.gene052947.t1
chr4.1	exon	83526120	83526255	83526120	ID=MS.gene052947.t1.exon2;Parent=MS.gene052947.t1
chr4.1	CDS	83526120	83526255	83526120	ID=cds.MS.gene052947.t1;Parent=MS.gene052947.t1
chr4.1	exon	83525843	83525944	83525843	ID=MS.gene052947.t1.exon3;Parent=MS.gene052947.t1
chr4.1	CDS	83525843	83525944	83525843	ID=cds.MS.gene052947.t1;Parent=MS.gene052947.t1
chr4.1	exon	83524847	83524893	83524847	ID=MS.gene052947.t1.exon4;Parent=MS.gene052947.t1
chr4.1	CDS	83524847	83524893	83524847	ID=cds.MS.gene052947.t1;Parent=MS.gene052947.t1

Gene Sequence

>MS.gene052947

ATGGTACTTTGCATTCTCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTTCGATCCAAAACCCCAGTTTCATTACAGTGTCTGAATCGATTATTGAATGATTTTTGCAGGGTAAGGGAACAGGCAGTTTCGGTAAGAGAAGGAACAAGACCCACACACTCTGTGTTAGGTGTGGCCGTCGCAGTTTCCATCTCCAGAAGAGTCGCTGCTCAGCATGTGCTTACCCAGCTGCACGTGTCAGGAAATGTAAGTTTTTTTTTTGTTCGATTTTAGAAAATGGGTTTAGTGTCAAAATTCGATTTTTGTGTTTTTAGATTTAGGGTTTAAGTTCAGGAAATGGAAGTGTTTTTTGATTTTCGAAAATGGGTTTTTGTCAAAATTTGATTTTTGAATTTCGGCGTTTTGTATTGTGTGATTTCAGATAACTGGAGTGAGAAGGCTATTAGGAGAAAGACCACTGGAACTGGTAGGATGAGGTACTTGAGGAACGTGCCTCGCAGATTCAAGAGTGGATTCAGAGAAGGTAATTTTTTCTTTAATCAATTTCCTGTGTTTAGTTTTTCTAGCACGTGCAATGCTTTAAATGTATAATGATTAAGCAATAATTTATGAATCAATAGATGAATAACTGTTAAGTTCATAAAGTAAAATGTTTTGTATTTGATTTAATTGATTGATCAATCAGGGTGATTTTTCTAGAATTATCATTTTTTTGGTACGCTAGAATGAGCAACTTTACAATATGATTTAATTGATAATATCATTATCAATAGATGAATGACTGTTAAGCTTAAACTTCTGTGTGTTACTGAATGAGTTGATTTAGGAGAGCCAAATCTCTTTATTTAGGTGTAGCAACTTTCTTGGGTTTGTGTTTTGTTAAAATGATTACAATGATCAAGTCCCTGCATTGGATATTCAGCTTATTTGCACAATAACTGCTGCTCATGCATAAGCTTGCATACGCTATTTTTAACAGCAAAAGAAAAAGTAACGTTAAATTATTTTTATATATGGTATAAGTTGTTTTATAAGCTATATTTAAGAAACTTGTGAAAAATAAGTTGAAAAAACCTAATAAAAATGGTCATAAGCTGTTTTCATAAGTTCTCACAATTTATGTTAGTAGATAAGTTCAAATAAGGCAATCCATGCAGGTTCTAATTTAGATCAGTTGGATCTTGGTTCTTTTAGGTGTGTTATTCTGTTTGTATTGAAACATTATTATGATTATAATACGTTAAATGTTAATTTTGACATGTTTTACTATAGGTATGTTATTTTATAAGCGCCAAATCTCTGTTTTATGTGAATTATTTGTTTGTTTGTGTATTTTGCTAATGTGAGCTCTTTTAGTTCTGTTTTTTTAGCTTTTGTTAGCATGATTGTATGGAAGTAGTTAAATCACTTTCTGAGTTGTTATTTTTTCTGGATTATTTTTTTGTTGATATGATTATTATTGGTTAAACCAGGTACTGAAGCTGCACCCAGGAACAAGGGAGCAGCTGCTTCTACCTAA

Protein sequence

>MS.gene052947.t1

MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCSACAYPAARVRKYNWSEKAIRRKTTGTGRMRYLRNVPRRFKSGFREGTEAAPRNKGAAAST