Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065644.t1 | XP_003590392.1 | 99.8 | 438 | 1 | 0 | 75 | 512 | 75 | 512 | 1.70E-246 | 861.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065644.t1 | Q7VD61 | 48.5 | 241 | 118 | 3 | 271 | 509 | 1 | 237 | 6.2e-59 | 229.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065644.t1 | A7UQU8 | 99.8 | 438 | 1 | 0 | 75 | 512 | 75 | 512 | 1.3e-246 | 861.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene065644.t1 | TF | Trihelix |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053427 | MS.gene065644 | 0.813959 | 1.97E-51 | -1.69E-46 |
| MS.gene054004 | MS.gene065644 | 0.810814 | 9.56E-51 | -1.69E-46 |
| MS.gene054005 | MS.gene065644 | 0.803722 | 3.04E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065644.t1 | MTR_1g061600 | 99.805 | 512 | 1 | 0 | 1 | 512 | 1 | 512 | 0.0 | 1069 |
| MS.gene065644.t1 | MTR_8g093330 | 48.106 | 264 | 124 | 4 | 252 | 508 | 56 | 313 | 1.25e-77 | 246 |
| MS.gene065644.t1 | MTR_2g016140 | 35.644 | 101 | 59 | 3 | 133 | 228 | 23 | 122 | 1.56e-15 | 78.2 |
| MS.gene065644.t1 | MTR_2g016140 | 35.644 | 101 | 59 | 3 | 133 | 228 | 23 | 122 | 1.57e-15 | 78.2 |
| MS.gene065644.t1 | MTR_4g079960 | 36.275 | 102 | 58 | 3 | 133 | 228 | 31 | 131 | 1.82e-15 | 77.8 |
| MS.gene065644.t1 | MTR_1g037650 | 41.346 | 104 | 51 | 4 | 121 | 221 | 27 | 123 | 2.07e-15 | 75.1 |
| MS.gene065644.t1 | MTR_6g486270 | 37.255 | 102 | 61 | 2 | 131 | 230 | 128 | 228 | 2.94e-15 | 77.8 |
| MS.gene065644.t1 | MTR_4g079960 | 36.275 | 102 | 58 | 3 | 133 | 228 | 31 | 131 | 3.12e-15 | 77.0 |
| MS.gene065644.t1 | MTR_4g079960 | 36.275 | 102 | 58 | 3 | 133 | 228 | 31 | 131 | 3.41e-15 | 77.0 |
| MS.gene065644.t1 | MTR_3g014280 | 41.346 | 104 | 51 | 4 | 121 | 221 | 27 | 123 | 2.34e-14 | 74.7 |
| MS.gene065644.t1 | MTR_5g017500 | 34.000 | 100 | 60 | 2 | 133 | 226 | 22 | 121 | 1.96e-13 | 70.1 |
| MS.gene065644.t1 | MTR_4g117990 | 38.000 | 100 | 58 | 2 | 133 | 228 | 44 | 143 | 5.40e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065644.t1 | AT3G10030 | 56.364 | 550 | 187 | 7 | 1 | 509 | 1 | 538 | 0.0 | 591 |
| MS.gene065644.t1 | AT3G10030 | 55.086 | 521 | 181 | 7 | 1 | 480 | 1 | 509 | 0.0 | 542 |
| MS.gene065644.t1 | AT3G18680 | 53.906 | 256 | 113 | 2 | 255 | 508 | 78 | 330 | 1.15e-90 | 281 |
| MS.gene065644.t1 | AT3G18680 | 47.751 | 289 | 113 | 3 | 255 | 508 | 78 | 363 | 1.97e-83 | 263 |
| MS.gene065644.t1 | AT3G54390 | 36.441 | 118 | 65 | 3 | 127 | 242 | 48 | 157 | 3.55e-17 | 82.8 |
| MS.gene065644.t1 | AT3G54390 | 36.441 | 118 | 65 | 3 | 127 | 242 | 32 | 141 | 3.57e-17 | 82.8 |
| MS.gene065644.t1 | AT3G58630 | 30.872 | 149 | 78 | 3 | 133 | 256 | 26 | 174 | 2.81e-16 | 80.5 |
| MS.gene065644.t1 | AT3G58630 | 30.872 | 149 | 78 | 3 | 133 | 256 | 26 | 174 | 3.15e-16 | 80.1 |
| MS.gene065644.t1 | AT3G14180 | 37.607 | 117 | 66 | 4 | 112 | 224 | 63 | 176 | 6.34e-16 | 80.5 |
| MS.gene065644.t1 | AT3G24490 | 31.667 | 120 | 73 | 3 | 105 | 221 | 64 | 177 | 1.33e-12 | 69.3 |
| MS.gene065644.t1 | AT2G44730 | 38.043 | 92 | 53 | 2 | 133 | 220 | 64 | 155 | 2.56e-12 | 68.9 |
Find 137 sgRNAs with CRISPR-Local
Find 315 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGGAAGAGTTGTTATATT+TGG | 0.225653 | 1.4:-50770026 | MS.gene065644:CDS |
| TTGACAATGCTTTGGACTTC+AGG | 0.272821 | 1.4:+50771534 | None:intergenic |
| ATTAGTGGATCGGCACTTAC+TGG | 0.274531 | 1.4:-50771482 | MS.gene065644:CDS |
| CGACATATCTGCTGCTCTTC+GGG | 0.289993 | 1.4:-50769964 | MS.gene065644:CDS |
| ATATTTGGTGGCATTGGTTT+TGG | 0.302206 | 1.4:-50770011 | MS.gene065644:CDS |
| CTTTCGAGCACATATCCTTC+AGG | 0.327576 | 1.4:-50769728 | MS.gene065644:CDS |
| GAACAACTCTCCGCCATCTA+AGG | 0.331588 | 1.4:+50771510 | None:intergenic |
| GGTGGTGAGGTGCGAAGGTT+TGG | 0.337687 | 1.4:+50773454 | None:intergenic |
| GAGAGTGGTGGTTGTGGTGG+TGG | 0.365463 | 1.4:+50773436 | None:intergenic |
| TGCGAGGAAAATGCCATTCC+TGG | 0.369901 | 1.4:-50769654 | MS.gene065644:intron |
| CCGACATATCTGCTGCTCTT+CGG | 0.371066 | 1.4:-50769965 | MS.gene065644:CDS |
| TATTGTTGGGAATTCGCTTC+CGG | 0.371702 | 1.4:-50772878 | MS.gene065644:CDS |
| CTTAGATTGCCTGGGTGAAA+TGG | 0.375148 | 1.4:+50772816 | None:intergenic |
| CGAAGGTTTGGTGGAGGTGG+TGG | 0.380551 | 1.4:+50773466 | None:intergenic |
| TCAATCAACTTTAGAGAAGA+TGG | 0.381962 | 1.4:-50770135 | MS.gene065644:CDS |
| AACCTTAGGGTCAATATTGC+AGG | 0.385341 | 1.4:+50771451 | None:intergenic |
| GTCTAGAGGTGTCACCTCTA+TGG | 0.386263 | 1.4:-50769697 | MS.gene065644:CDS |
| TCTAAGGTTTGACAATGCTT+TGG | 0.391295 | 1.4:+50771526 | None:intergenic |
| CCACCGTTGCCGCTAGAAAC+AGG | 0.392718 | 1.4:+50773207 | None:intergenic |
| TTTCTGCTAGTCATTGGCCT+TGG | 0.394011 | 1.4:-50772918 | MS.gene065644:CDS |
| AGGTTTGGTGGAGGTGGTGG+TGG | 0.399667 | 1.4:+50773469 | None:intergenic |
| GGAGGTGGTGGTGGTGAGAG+TGG | 0.404152 | 1.4:+50773478 | None:intergenic |
| GTTGCATTTCTGCTAGTCAT+TGG | 0.405063 | 1.4:-50772924 | MS.gene065644:CDS |
| GGCACACTTATTGACCAAAC+TGG | 0.406605 | 1.4:-50769226 | MS.gene065644:CDS |
| GTTTACTTGACCTCCACTGC+TGG | 0.412531 | 1.4:+50771559 | None:intergenic |
| GTTAGCTTATTGCTCCAGTT+TGG | 0.414252 | 1.4:+50769212 | None:intergenic |
| ATTAAACCTCTTAGATTGCC+TGG | 0.414921 | 1.4:+50772807 | None:intergenic |
| AAGCATTGTCAAACCTTAGA+TGG | 0.420124 | 1.4:-50771523 | MS.gene065644:CDS |
| CTTCAGGTAGCAATTGTTGT+TGG | 0.428109 | 1.4:-50771144 | MS.gene065644:intron |
| AAGCAGATGGAACATATTGT+TGG | 0.431908 | 1.4:-50772892 | MS.gene065644:CDS |
| GGTGAGGTGCGAAGGTTTGG+TGG | 0.432109 | 1.4:+50773457 | None:intergenic |
| GTGCGAAGGTTTGGTGGAGG+TGG | 0.433564 | 1.4:+50773463 | None:intergenic |
| GTTGCAATAGCTTCCCGTCT+TGG | 0.434010 | 1.4:-50771259 | MS.gene065644:CDS |
| GGAATCTAAGAGGAAGAGAT+TGG | 0.434366 | 1.4:-50773071 | MS.gene065644:CDS |
| GGAAGAGTTGTTATATTTGG+TGG | 0.436188 | 1.4:-50770023 | MS.gene065644:CDS |
| GGTGGTGAGAGTGGTGGTTG+TGG | 0.437072 | 1.4:+50773430 | None:intergenic |
| CTCAAAGGTACCAACGTAGA+TGG | 0.437085 | 1.4:-50769786 | MS.gene065644:CDS |
| CGTTTGCTGAACCGTACAAT+AGG | 0.437374 | 1.4:-50770073 | MS.gene065644:CDS |
| GTTGTTATATTTGGTGGCAT+TGG | 0.439242 | 1.4:-50770017 | MS.gene065644:CDS |
| AGCAGATGGAACATATTGTT+GGG | 0.444247 | 1.4:-50772891 | MS.gene065644:CDS |
| GACGGAGGTGGTGATGTGTT+TGG | 0.447470 | 1.4:+50773383 | None:intergenic |
| CTGCTCTGCAGTTAATGCTC+AGG | 0.451851 | 1.4:-50769814 | MS.gene065644:intron |
| AGGTTGATAATTTGAAGAAA+AGG | 0.452877 | 1.4:-50772978 | MS.gene065644:CDS |
| GATGTACTGCATACCAAGTT+GGG | 0.454334 | 1.4:-50771068 | MS.gene065644:intron |
| ATAGAAAAGATCGAGAAGAA+TGG | 0.456281 | 1.4:-50773158 | MS.gene065644:CDS |
| TCTATACTCTGCTCCTACTC+CGG | 0.456827 | 1.4:+50773176 | None:intergenic |
| GTCGTCGTCGGCGACGGCGG+CGG | 0.456922 | 1.4:+50773359 | None:intergenic |
| TTTATCATCATCAGCAAACT+TGG | 0.459547 | 1.4:+50772855 | None:intergenic |
| CATCTACGTTGGTACCTTTG+AGG | 0.460201 | 1.4:+50769787 | None:intergenic |
| GGTGAGAGTGGTGGTTGTGG+TGG | 0.464473 | 1.4:+50773433 | None:intergenic |
| GAGAGACATAGAATGAATAA+TGG | 0.466819 | 1.4:-50772946 | MS.gene065644:CDS |
| GTGGTGGTGGTGAGGTGCGA+AGG | 0.467732 | 1.4:+50773449 | None:intergenic |
| TGTGATGCAACGACGTCGTA+TGG | 0.469790 | 1.4:-50773252 | MS.gene065644:CDS |
| TCCTTTCTCAAGATGCCTGA+TGG | 0.470108 | 1.4:+50770043 | None:intergenic |
| GTCGGCGACGGCGGCGGAGA+CGG | 0.470366 | 1.4:+50773365 | None:intergenic |
| ACAATAGGCAACGGGCCATC+AGG | 0.470864 | 1.4:-50770058 | MS.gene065644:CDS |
| TTGGCCTTGGTTTAAGCAGA+TGG | 0.477301 | 1.4:-50772905 | MS.gene065644:CDS |
| GTCTCCGTCGTCGTCGGCGA+CGG | 0.482206 | 1.4:+50773353 | None:intergenic |
| GTGATTAACCTTACCCAACT+TGG | 0.488217 | 1.4:+50771055 | None:intergenic |
| CAGGTAGCAATTGTTGTTGG+AGG | 0.488440 | 1.4:-50771141 | MS.gene065644:CDS |
| GAATCTAAGAGGAAGAGATT+GGG | 0.489819 | 1.4:-50773070 | MS.gene065644:CDS |
| TGGAGAAGTGGTGGTGAGAG+TGG | 0.496490 | 1.4:+50773421 | None:intergenic |
| ATTTCTTCTGTGGAGATGCA+TGG | 0.497325 | 1.4:-50771113 | MS.gene065644:CDS |
| TGCTGCTCTTCGGGCTTCAG+AGG | 0.502112 | 1.4:-50769955 | MS.gene065644:CDS |
| TTGGGAAGAAGTAGCTTCAA+TGG | 0.503405 | 1.4:-50773052 | MS.gene065644:CDS |
| TTTCGAGCACATATCCTTCA+GGG | 0.508101 | 1.4:-50769727 | MS.gene065644:CDS |
| GACGGCGGCGGAGACGGAGG+TGG | 0.510775 | 1.4:+50773371 | None:intergenic |
| TAAAGTTGATTGAAGCAGTA+AGG | 0.510796 | 1.4:+50770145 | None:intergenic |
| TGGTGGTTGTGGTGGTGGTG+AGG | 0.511118 | 1.4:+50773441 | None:intergenic |
| TCTTAAATTTGTCAGCATGA+TGG | 0.513943 | 1.4:-50770183 | MS.gene065644:intron |
| ATAGTATTGCTTACCAGGAA+TGG | 0.515872 | 1.4:+50769641 | None:intergenic |
| TTTCACCCAGGCAATCTAAG+AGG | 0.517069 | 1.4:-50772813 | MS.gene065644:intron |
| GATGCATGGGTAACTGCAAC+TGG | 0.517940 | 1.4:-50771099 | MS.gene065644:CDS |
| GCCATCAGGCATCTTGAGAA+AGG | 0.521422 | 1.4:-50770044 | MS.gene065644:CDS |
| GGTGGTGGTGGTGAGAGTGG+TGG | 0.521909 | 1.4:+50773481 | None:intergenic |
| CTGTACCTCCACACCAAGAC+GGG | 0.522588 | 1.4:+50771246 | None:intergenic |
| GTTTCTAGCGGCAACGGTGG+AGG | 0.523855 | 1.4:-50773204 | MS.gene065644:CDS |
| ATGGCCCGTTGCCTATTGTA+CGG | 0.527865 | 1.4:+50770062 | None:intergenic |
| AGCTTCCCGTCTTGGTGTGG+AGG | 0.534343 | 1.4:-50771251 | MS.gene065644:intron |
| TCCGTCGTCGTCGGCGACGG+CGG | 0.535708 | 1.4:+50773356 | None:intergenic |
| TTAAACCTCTTAGATTGCCT+GGG | 0.536780 | 1.4:+50772808 | None:intergenic |
| AGATGTACTGCATACCAAGT+TGG | 0.537226 | 1.4:-50771069 | MS.gene065644:CDS |
| AACATTTCAAAAGCTTTGTG+TGG | 0.537883 | 1.4:-50769259 | MS.gene065644:CDS |
| TCATCATCAGCAAACTTGGC+CGG | 0.538573 | 1.4:+50772859 | None:intergenic |
| TACCTGCAATATTGACCCTA+AGG | 0.540236 | 1.4:-50771453 | MS.gene065644:intron |
| TTTCTTCTGTGGAGATGCAT+GGG | 0.540958 | 1.4:-50771112 | MS.gene065644:CDS |
| GGAGGTCGTAATTTCTTCTG+TGG | 0.542254 | 1.4:-50771123 | MS.gene065644:CDS |
| CTACCAGCGTCATCGTCGAA+TGG | 0.542605 | 1.4:+50773309 | None:intergenic |
| CAATCAACTTTAGAGAAGAT+GGG | 0.544338 | 1.4:-50770134 | MS.gene065644:CDS |
| AGGGTCAATATTGCAGGTAT+CGG | 0.548147 | 1.4:+50771457 | None:intergenic |
| AGGTGGTGATGTGTTTGGAT+TGG | 0.554894 | 1.4:+50773388 | None:intergenic |
| TGCCTGGGTGAAATGGAAGC+AGG | 0.556747 | 1.4:+50772823 | None:intergenic |
| CTGAATCGAGGGAATCTAAG+AGG | 0.560567 | 1.4:-50773081 | MS.gene065644:CDS |
| AAACCTGTTTCTAGCGGCAA+CGG | 0.561702 | 1.4:-50773210 | MS.gene065644:CDS |
| TGAACCGTACAATAGGCAAC+GGG | 0.562366 | 1.4:-50770066 | MS.gene065644:CDS |
| GATATGTCGGTTGAGAAAAG+TGG | 0.562539 | 1.4:+50769978 | None:intergenic |
| GGCGACGGCGGCGGAGACGG+AGG | 0.562987 | 1.4:+50773368 | None:intergenic |
| AATGCTCAGGCTGTCCTCAA+AGG | 0.568956 | 1.4:-50769801 | MS.gene065644:CDS |
| GCTGCTCTTCGGGCTTCAGA+GGG | 0.570088 | 1.4:-50769954 | MS.gene065644:intron |
| GGCAACGGTGGAGGAAGCGC+CGG | 0.572056 | 1.4:-50773195 | MS.gene065644:CDS |
| CGTATGGATTCAACAACAAA+CGG | 0.572327 | 1.4:-50773236 | MS.gene065644:CDS |
| ACAAACTTCAGTTTCAATGC+AGG | 0.580585 | 1.4:-50770096 | MS.gene065644:CDS |
| GGTGGAGGAAGCGCCGGAGT+AGG | 0.580586 | 1.4:-50773189 | MS.gene065644:CDS |
| CCTGTTTCTAGCGGCAACGG+TGG | 0.581238 | 1.4:-50773207 | MS.gene065644:CDS |
| GGTGTCGTCTCCGTCGTCGT+CGG | 0.581790 | 1.4:+50773347 | None:intergenic |
| GTCATATACGCCATCTACGT+TGG | 0.587713 | 1.4:+50769776 | None:intergenic |
| AACTTCATTTGAAACTAACA+TGG | 0.588078 | 1.4:+50771279 | None:intergenic |
| GCCGCCGTCGCCGACGACGA+CGG | 0.592641 | 1.4:-50773357 | MS.gene065644:CDS |
| GTGGCTACGTCCAGCAGTGG+AGG | 0.596879 | 1.4:-50771569 | MS.gene065644:CDS |
| AATCCATTCGACGATGACGC+TGG | 0.603457 | 1.4:-50773312 | MS.gene065644:CDS |
| GAGGTGCGAAGGTTTGGTGG+AGG | 0.605729 | 1.4:+50773460 | None:intergenic |
| TTCAGGGAGCTAGTGTCTAG+AGG | 0.610453 | 1.4:-50769711 | MS.gene065644:CDS |
| CAGGGCTGACATATCCATAG+AGG | 0.610631 | 1.4:+50769683 | None:intergenic |
| CTGAACCGTACAATAGGCAA+CGG | 0.610750 | 1.4:-50770067 | MS.gene065644:CDS |
| AATAGCTTCCCGTCTTGGTG+TGG | 0.611957 | 1.4:-50771254 | MS.gene065644:CDS |
| TGAGAATCAATCGAAGAGTG+TGG | 0.613705 | 1.4:-50773016 | MS.gene065644:CDS |
| AGAAGTGGTGGTGAGAGTGG+TGG | 0.614183 | 1.4:+50773424 | None:intergenic |
| TGTTCCATCTGCTTAAACCA+AGG | 0.614998 | 1.4:+50772901 | None:intergenic |
| GGAGACGACACCGATGACTA+CGG | 0.620045 | 1.4:-50773336 | MS.gene065644:CDS |
| GGAGTGGCTACGTCCAGCAG+TGG | 0.623352 | 1.4:-50771572 | MS.gene065644:CDS |
| GAATGGATTACCGTAGTCAT+CGG | 0.625254 | 1.4:+50773326 | None:intergenic |
| AATTTACTCAGCTGAATCGA+GGG | 0.625957 | 1.4:-50773092 | MS.gene065644:CDS |
| AAATTTACTCAGCTGAATCG+AGG | 0.626415 | 1.4:-50773093 | MS.gene065644:CDS |
| CCGAAGAGCAGCAGATATGT+CGG | 0.627184 | 1.4:+50769965 | None:intergenic |
| GGACTGAAGCTGTGGAGAAG+TGG | 0.627526 | 1.4:+50773409 | None:intergenic |
| TCTAGACACTAGCTCCCTGA+AGG | 0.629448 | 1.4:+50769713 | None:intergenic |
| TTCCTGCTTCCATTTCACCC+AGG | 0.634674 | 1.4:-50772825 | MS.gene065644:CDS |
| ACTGTACCTCCACACCAAGA+CGG | 0.637094 | 1.4:+50771245 | None:intergenic |
| TTTGGATTGGACTGAAGCTG+TGG | 0.637149 | 1.4:+50773401 | None:intergenic |
| GCTTTGTGTGGAGAACAAGT+TGG | 0.647871 | 1.4:-50769247 | MS.gene065644:CDS |
| CTGAAGCTGTGGAGAAGTGG+TGG | 0.656134 | 1.4:+50773412 | None:intergenic |
| CGGTCAAAACCTGTTTCTAG+CGG | 0.659483 | 1.4:-50773216 | MS.gene065644:CDS |
| GGTGGTTGTTATCGTCGTGG+AGG | 0.671957 | 1.4:+50773499 | None:intergenic |
| CATTGTCAAACCTTAGATGG+CGG | 0.680970 | 1.4:-50771520 | MS.gene065644:CDS |
| TGTGGAACAGTGTAAGAACA+AGG | 0.689866 | 1.4:-50772998 | MS.gene065644:CDS |
| AGTGGTGGTTGTTATCGTCG+TGG | 0.691782 | 1.4:+50773496 | None:intergenic |
| GTCAGCCCTGACATTCTGCG+AGG | 0.718203 | 1.4:-50769670 | MS.gene065644:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTAGAAAATTATATAGAA+AGG | + | chr1.4:50772830-50772849 | None:intergenic | 10.0% |
| !! | TAAAGATTAAAAAGATCTTA+TGG | + | chr1.4:50772475-50772494 | None:intergenic | 15.0% |
| !! | TGTGTTTACTTTATTAATTA+TGG | - | chr1.4:50770349-50770368 | MS.gene065644:intron | 15.0% |
| !! | TTCAATGTTTATTCTATTTA+TGG | - | chr1.4:50771721-50771740 | MS.gene065644:intron | 15.0% |
| !!! | AAACTTAAAATTTTCAGATT+CGG | + | chr1.4:50770120-50770139 | None:intergenic | 15.0% |
| !!! | ATACGTTTAGATTTTATTTT+AGG | - | chr1.4:50770053-50770072 | MS.gene065644:CDS | 15.0% |
| !!! | CTCATTTTAAAAAAGAAAAT+TGG | - | chr1.4:50772016-50772035 | MS.gene065644:intron | 15.0% |
| !!! | GAAAATTTTAAGTTTTGTTT+AGG | - | chr1.4:50770125-50770144 | MS.gene065644:CDS | 15.0% |
| !!! | TAAGATCTTTTTAATCTTTA+TGG | - | chr1.4:50772475-50772494 | MS.gene065644:intron | 15.0% |
| !!! | TACGTTTAGATTTTATTTTA+GGG | - | chr1.4:50770054-50770073 | MS.gene065644:CDS | 15.0% |
| !! | AATAAATTTAAGCAAGCAAA+TGG | + | chr1.4:50771439-50771458 | None:intergenic | 20.0% |
| !! | AATATTACAAGAATAAGAAC+AGG | + | chr1.4:50771117-50771136 | None:intergenic | 20.0% |
| !! | ATATTACAAGAATAAGAACA+GGG | + | chr1.4:50771116-50771135 | None:intergenic | 20.0% |
| !! | ATGCGATATTAGTAAAAATA+CGG | + | chr1.4:50770821-50770840 | None:intergenic | 20.0% |
| !!! | AATTGGAAATTTGAACTTTT+AGG | - | chr1.4:50772033-50772052 | MS.gene065644:intron | 20.0% |
| !!! | ACTTTATTTTGAACTTGATT+TGG | - | chr1.4:50770638-50770657 | MS.gene065644:intron | 20.0% |
| !!! | AGTTGTAGTTTTTAATCTAT+TGG | - | chr1.4:50773457-50773476 | MS.gene065644:CDS | 20.0% |
| !!! | TAATTTGTGAACTTGAAATA+TGG | + | chr1.4:50770964-50770983 | None:intergenic | 20.0% |
| !!! | TATATTATTTCTTTTCCAAC+TGG | - | chr1.4:50772120-50772139 | MS.gene065644:intron | 20.0% |
| !!! | TGCTAGTATTTTCTTTTATA+TGG | - | chr1.4:50773316-50773335 | MS.gene065644:CDS | 20.0% |
| !!! | TTACGACAATGATTTATTTT+TGG | - | chr1.4:50772274-50772293 | MS.gene065644:intron | 20.0% |
| !!! | TTCATGTATTTTCTTTTTGA+TGG | + | chr1.4:50771768-50771787 | None:intergenic | 20.0% |
| !!! | TTCTTTTTTAAAATGAGATG+AGG | + | chr1.4:50772013-50772032 | None:intergenic | 20.0% |
| !!! | TTTAGATTTTATTTTAGGGT+AGG | - | chr1.4:50770058-50770077 | MS.gene065644:CDS | 20.0% |
| !!! | TTTGCTGTTTTTGTTTTAAT+TGG | - | chr1.4:50770157-50770176 | MS.gene065644:CDS | 20.0% |
| ! | AAAGGAAGAGTTGTTATATT+TGG | - | chr1.4:50772721-50772740 | MS.gene065644:intron | 25.0% |
| ! | ATCTAATTGAATAACGAACA+AGG | + | chr1.4:50770452-50770471 | None:intergenic | 25.0% |
| ! | ATGAATATCCTGATTACAAA+TGG | - | chr1.4:50771809-50771828 | MS.gene065644:intron | 25.0% |
| ! | ATTGATGTGCTAAAAAAACA+AGG | - | chr1.4:50770213-50770232 | MS.gene065644:intron | 25.0% |
| ! | ATTTGTAATCAGGATATTCA+TGG | + | chr1.4:50771810-50771829 | None:intergenic | 25.0% |
| ! | CAAGCATCAAAAATTCATTT+AGG | + | chr1.4:50772351-50772370 | None:intergenic | 25.0% |
| ! | CACTCCATATCTAAAAATAA+AGG | + | chr1.4:50771161-50771180 | None:intergenic | 25.0% |
| ! | CAGTTTATGAAAATAACCTT+GGG | + | chr1.4:50773354-50773373 | None:intergenic | 25.0% |
| ! | CATATCTAAAAATAAAGGAG+GGG | + | chr1.4:50771156-50771175 | None:intergenic | 25.0% |
| ! | CCATATCTAAAAATAAAGGA+GGG | + | chr1.4:50771157-50771176 | None:intergenic | 25.0% |
| ! | CTAAGCACTACAAAAATTTA+TGG | + | chr1.4:50773281-50773300 | None:intergenic | 25.0% |
| ! | GAATGACATTCAAACTATAA+TGG | + | chr1.4:50771078-50771097 | None:intergenic | 25.0% |
| ! | TAGATATTTAAATATGCGAC+AGG | + | chr1.4:50773246-50773265 | None:intergenic | 25.0% |
| ! | TCAGTTTATGAAAATAACCT+TGG | + | chr1.4:50773355-50773374 | None:intergenic | 25.0% |
| ! | TCCATATCTAAAAATAAAGG+AGG | + | chr1.4:50771158-50771177 | None:intergenic | 25.0% |
| ! | TGTCGCATATTTAAATATCT+AGG | - | chr1.4:50773245-50773264 | MS.gene065644:CDS | 25.0% |
| ! | TTGATGTGCTAAAAAAACAA+GGG | - | chr1.4:50770214-50770233 | MS.gene065644:intron | 25.0% |
| ! | TTGATTTATTTGTATGCTTG+TGG | - | chr1.4:50769978-50769997 | MS.gene065644:CDS | 25.0% |
| ! | TTTGATATGTTAGCAAGTTT+GGG | - | chr1.4:50770573-50770592 | MS.gene065644:intron | 25.0% |
| !! | AACTTCATTTGAAACTAACA+TGG | + | chr1.4:50771471-50771490 | None:intergenic | 25.0% |
| !! | CTGCAACTATATTTCATTTT+AGG | + | chr1.4:50771334-50771353 | None:intergenic | 25.0% |
| !! | CTTTTTACTTGACATGTTTA+AGG | - | chr1.4:50770508-50770527 | MS.gene065644:intron | 25.0% |
| !! | TTCAAGTTCACAAATTACAT+GGG | - | chr1.4:50770967-50770986 | MS.gene065644:intron | 25.0% |
| !! | TTTTGATATGTTAGCAAGTT+TGG | - | chr1.4:50770572-50770591 | MS.gene065644:intron | 25.0% |
| !! | TTTTGATGCTTGAACTTTAT+TGG | - | chr1.4:50772359-50772378 | MS.gene065644:intron | 25.0% |
| !!! | AGAGTTGTTCTAAAAATTAG+TGG | - | chr1.4:50771250-50771269 | MS.gene065644:intron | 25.0% |
| !!! | AGGTTGATAATTTGAAGAAA+AGG | - | chr1.4:50769769-50769788 | MS.gene065644:CDS | 25.0% |
| !!! | ATTTTAGGGTAGGTTTTTTT+TGG | - | chr1.4:50770068-50770087 | MS.gene065644:CDS | 25.0% |
| !!! | CTTTATTTTTAGATATGGAG+TGG | - | chr1.4:50771159-50771178 | MS.gene065644:intron | 25.0% |
| !!! | GAAATTTGAACTTTTAGGTA+GGG | - | chr1.4:50772038-50772057 | MS.gene065644:intron | 25.0% |
| !!! | TGTTCTAAAAATTAGTGGAT+CGG | - | chr1.4:50771255-50771274 | MS.gene065644:CDS | 25.0% |
| !!! | TTTCAAGTTCACAAATTACA+TGG | - | chr1.4:50770966-50770985 | MS.gene065644:intron | 25.0% |
| AAAGTAAACACATAAGTCCT+GGG | + | chr1.4:50770341-50770360 | None:intergenic | 30.0% | |
| AATGAAATATAGTTGCAGTC+TGG | - | chr1.4:50771336-50771355 | MS.gene065644:intron | 30.0% | |
| ACTTCTACTTAAACAAAGCT+TGG | - | chr1.4:50770759-50770778 | MS.gene065644:intron | 30.0% | |
| ATAGAAAAGATCGAGAAGAA+TGG | - | chr1.4:50769589-50769608 | MS.gene065644:intron | 30.0% | |
| ATAGTTGTATGTTGAGTGTT+TGG | - | chr1.4:50770600-50770619 | MS.gene065644:intron | 30.0% | |
| CAAAATCAACTTTGTATGAC+AGG | - | chr1.4:50770785-50770804 | MS.gene065644:intron | 30.0% | |
| CAAATTGGAATTAAGAGCTT+AGG | + | chr1.4:50770995-50771014 | None:intergenic | 30.0% | |
| GAGAGACATAGAATGAATAA+TGG | - | chr1.4:50769801-50769820 | MS.gene065644:CDS | 30.0% | |
| GCTTGCTTAAATTTATTGTC+AGG | - | chr1.4:50771442-50771461 | MS.gene065644:intron | 30.0% | |
| GTCTGGTTGTATTATATATG+TGG | - | chr1.4:50771353-50771372 | MS.gene065644:intron | 30.0% | |
| TAAAGTAAACACATAAGTCC+TGG | + | chr1.4:50770342-50770361 | None:intergenic | 30.0% | |
| TAGTTGTATGTTGAGTGTTT+GGG | - | chr1.4:50770601-50770620 | MS.gene065644:intron | 30.0% | |
| TCTTAAATTTGTCAGCATGA+TGG | - | chr1.4:50772564-50772583 | MS.gene065644:intron | 30.0% | |
| TGCTTAAATTTATTGTCAGG+TGG | - | chr1.4:50771445-50771464 | MS.gene065644:intron | 30.0% | |
| TTATGAATAGTCTGCTTCAT+TGG | + | chr1.4:50773399-50773418 | None:intergenic | 30.0% | |
| TTATTTGTATGCTTGTGGAT+TGG | - | chr1.4:50769983-50770002 | MS.gene065644:CDS | 30.0% | |
| TTCAATATGCTGCAAAACAA+AGG | + | chr1.4:50772207-50772226 | None:intergenic | 30.0% | |
| TTCTTTCTTTGTGATACTTC+AGG | - | chr1.4:50771587-50771606 | MS.gene065644:intron | 30.0% | |
| TTGATTGTGTTGTCATTGTT+TGG | - | chr1.4:50771051-50771070 | MS.gene065644:intron | 30.0% | |
| TTTACTTGACATGTTTAAGG+TGG | - | chr1.4:50770511-50770530 | MS.gene065644:intron | 30.0% | |
| TTTATCATCATCAGCAAACT+TGG | + | chr1.4:50769895-50769914 | None:intergenic | 30.0% | |
| ! | AACATTTCAAAAGCTTTGTG+TGG | - | chr1.4:50773488-50773507 | MS.gene065644:CDS | 30.0% |
| ! | ATATGAGATCAGTGTTTTCA+TGG | - | chr1.4:50772412-50772431 | MS.gene065644:intron | 30.0% |
| ! | ATCAACCACATGGATATTTT+TGG | - | chr1.4:50772887-50772906 | MS.gene065644:CDS | 30.0% |
| ! | CAATCAACTTTAGAGAAGAT+GGG | - | chr1.4:50772613-50772632 | MS.gene065644:intron | 30.0% |
| ! | CACTAGGATTTGAAACTATA+TGG | - | chr1.4:50770888-50770907 | MS.gene065644:intron | 30.0% |
| ! | TAAAGTTGATTGAAGCAGTA+AGG | + | chr1.4:50772605-50772624 | None:intergenic | 30.0% |
| ! | TCAATCAACTTTAGAGAAGA+TGG | - | chr1.4:50772612-50772631 | MS.gene065644:intron | 30.0% |
| !! | ATTGCATCTGGTCTTTTTAT+GGG | - | chr1.4:50773127-50773146 | MS.gene065644:CDS | 30.0% |
| !! | GGAAATTTGAACTTTTAGGT+AGG | - | chr1.4:50772037-50772056 | MS.gene065644:intron | 30.0% |
| !! | TATTGCATCTGGTCTTTTTA+TGG | - | chr1.4:50773126-50773145 | MS.gene065644:CDS | 30.0% |
| !!! | CCCTCCTTTATTTTTAGATA+TGG | - | chr1.4:50771154-50771173 | MS.gene065644:intron | 30.0% |
| AAAACAACACACGACAAACA+CGG | + | chr1.4:50770260-50770279 | None:intergenic | 35.0% | |
| AAATTTACTCAGCTGAATCG+AGG | - | chr1.4:50769654-50769673 | MS.gene065644:intron | 35.0% | |
| AACTACTTCGCATTGCAAAT+TGG | + | chr1.4:50771010-50771029 | None:intergenic | 35.0% | |
| AAGCAGATGGAACATATTGT+TGG | - | chr1.4:50769855-50769874 | MS.gene065644:intron | 35.0% | |
| AAGCTTCAGCTAAACTGAAT+AGG | + | chr1.4:50771565-50771584 | None:intergenic | 35.0% | |
| AATATTGACCCTAAGGTTTG+TGG | - | chr1.4:50771301-50771320 | MS.gene065644:intron | 35.0% | |
| AATTTACTCAGCTGAATCGA+GGG | - | chr1.4:50769655-50769674 | MS.gene065644:CDS | 35.0% | |
| ACAAACTTCAGTTTCAATGC+AGG | - | chr1.4:50772651-50772670 | MS.gene065644:intron | 35.0% | |
| ACTACAACTGCACAAAGAAA+TGG | + | chr1.4:50773446-50773465 | None:intergenic | 35.0% | |
| AGCAGATGGAACATATTGTT+GGG | - | chr1.4:50769856-50769875 | MS.gene065644:intron | 35.0% | |
| ATAGAACTGCTAGTTGAAGT+TGG | - | chr1.4:50771848-50771867 | MS.gene065644:intron | 35.0% | |
| ATAGTATTGCTTACCAGGAA+TGG | + | chr1.4:50773109-50773128 | None:intergenic | 35.0% | |
| ATATTGACCCTAAGGTTTGT+GGG | - | chr1.4:50771302-50771321 | MS.gene065644:intron | 35.0% | |
| ATGCAATAGTATTGCTTACC+AGG | + | chr1.4:50773114-50773133 | None:intergenic | 35.0% | |
| ATTAAACCTCTTAGATTGCC+TGG | + | chr1.4:50769943-50769962 | None:intergenic | 35.0% | |
| CATCTTCATGTATTGCACAT+GGG | - | chr1.4:50772387-50772406 | MS.gene065644:intron | 35.0% | |
| CATGTGCAATACATGAAGAT+GGG | + | chr1.4:50772388-50772407 | None:intergenic | 35.0% | |
| CGTATGGATTCAACAACAAA+CGG | - | chr1.4:50769511-50769530 | MS.gene065644:intron | 35.0% | |
| GAAGTGAGTGATTGATGTTT+GGG | - | chr1.4:50770675-50770694 | MS.gene065644:intron | 35.0% | |
| GAATCTAAGAGGAAGAGATT+GGG | - | chr1.4:50769677-50769696 | MS.gene065644:CDS | 35.0% | |
| GATTACAAATGGATGATCCA+AGG | - | chr1.4:50771820-50771839 | MS.gene065644:intron | 35.0% | |
| GCTGACAAATTTAAGAACTC+AGG | + | chr1.4:50772560-50772579 | None:intergenic | 35.0% | |
| GGAAAGAGTAATAGATGATG+CGG | + | chr1.4:50772862-50772881 | None:intergenic | 35.0% | |
| GGAAGAGTTGTTATATTTGG+TGG | - | chr1.4:50772724-50772743 | MS.gene065644:intron | 35.0% | |
| GTAAGCAATACTATTGCATC+TGG | - | chr1.4:50773115-50773134 | MS.gene065644:CDS | 35.0% | |
| GTGTGTATATTTCTTCTCTG+TGG | + | chr1.4:50770408-50770427 | None:intergenic | 35.0% | |
| TAGAACTGCTAGTTGAAGTT+GGG | - | chr1.4:50771849-50771868 | MS.gene065644:intron | 35.0% | |
| TCTAAAAATAAAGGAGGGGA+AGG | + | chr1.4:50771152-50771171 | None:intergenic | 35.0% | |
| TCTGTAAAACTGAACACACT+AGG | - | chr1.4:50770872-50770891 | MS.gene065644:intron | 35.0% | |
| TGAAGTGAGTGATTGATGTT+TGG | - | chr1.4:50770674-50770693 | MS.gene065644:intron | 35.0% | |
| TGGATCATCCATTTGTAATC+AGG | + | chr1.4:50771820-50771839 | None:intergenic | 35.0% | |
| TGTAGAATCTTAGCATTGCA+TGG | - | chr1.4:50770541-50770560 | MS.gene065644:intron | 35.0% | |
| TGTTTAAGTAGAAGTGAGAG+TGG | + | chr1.4:50770754-50770773 | None:intergenic | 35.0% | |
| TTAAACCTCTTAGATTGCCT+GGG | + | chr1.4:50769942-50769961 | None:intergenic | 35.0% | |
| ! | AAATATCCATGTGGTTGATG+TGG | + | chr1.4:50772886-50772905 | None:intergenic | 35.0% |
| ! | AAGCATTGTCAAACCTTAGA+TGG | - | chr1.4:50771224-50771243 | MS.gene065644:intron | 35.0% |
| ! | AATATCCATGTGGTTGATGT+GGG | + | chr1.4:50772885-50772904 | None:intergenic | 35.0% |
| ! | AGTTCTCATGATTTTCCTCT+AGG | - | chr1.4:50771522-50771541 | MS.gene065644:CDS | 35.0% |
| ! | ATGGAAGTTTTTGTAACCCA+AGG | - | chr1.4:50773335-50773354 | MS.gene065644:CDS | 35.0% |
| ! | CTTATTTGAAATCCACTGCA+AGG | + | chr1.4:50773222-50773241 | None:intergenic | 35.0% |
| ! | GTTCTCATGATTTTCCTCTA+GGG | - | chr1.4:50771523-50771542 | MS.gene065644:CDS | 35.0% |
| ! | GTTGTTATATTTGGTGGCAT+TGG | - | chr1.4:50772730-50772749 | MS.gene065644:intron | 35.0% |
| ! | GTTTACTTTGAAAGCAAGCT+TGG | - | chr1.4:50770701-50770720 | MS.gene065644:intron | 35.0% |
| ! | GTTTTTAATCTATTGGCACC+CGG | - | chr1.4:50773464-50773483 | MS.gene065644:CDS | 35.0% |
| ! | TAGCAGTTCTATGTTTTCCT+TGG | + | chr1.4:50771840-50771859 | None:intergenic | 35.0% |
| ! | TAGTGTGTTCAGTTTTACAG+AGG | + | chr1.4:50770873-50770892 | None:intergenic | 35.0% |
| ! | TCTAAGGTTTGACAATGCTT+TGG | + | chr1.4:50771224-50771243 | None:intergenic | 35.0% |
| ! | TTTTTAATCTATTGGCACCC+GGG | - | chr1.4:50773465-50773484 | MS.gene065644:CDS | 35.0% |
| !! | AACTTTGACTTGTATGGGAT+TGG | - | chr1.4:50771928-50771947 | MS.gene065644:intron | 35.0% |
| !! | CAATGCGAAGTAGTTTTACT+TGG | - | chr1.4:50771015-50771034 | MS.gene065644:intron | 35.0% |
| !! | GAGTGAACTTTGACTTGTAT+GGG | - | chr1.4:50771923-50771942 | MS.gene065644:intron | 35.0% |
| !! | TTGCATCTGGTCTTTTTATG+GGG | - | chr1.4:50773128-50773147 | MS.gene065644:CDS | 35.0% |
| !!! | AAAGCTTTTGAAATGTTCCC+GGG | + | chr1.4:50773485-50773504 | None:intergenic | 35.0% |
| !!! | ATATTTGGTGGCATTGGTTT+TGG | - | chr1.4:50772736-50772755 | MS.gene065644:intron | 35.0% |
| !!! | CAAAGCTTTTGAAATGTTCC+CGG | + | chr1.4:50773486-50773505 | None:intergenic | 35.0% |
| AACCTTAGGGTCAATATTGC+AGG | + | chr1.4:50771299-50771318 | None:intergenic | 40.0% | |
| AAGAGTAATAGATGATGCGG+AGG | + | chr1.4:50772859-50772878 | None:intergenic | 40.0% | |
| ACAACTGCACAAAGAAATGG+TGG | + | chr1.4:50773443-50773462 | None:intergenic | 40.0% | |
| AGAGTAATAGATGATGCGGA+GGG | + | chr1.4:50772858-50772877 | None:intergenic | 40.0% | |
| AGATGTACTGCATACCAAGT+TGG | - | chr1.4:50771678-50771697 | MS.gene065644:intron | 40.0% | |
| AGCAAAATACAAGACCCTAG+AGG | + | chr1.4:50771540-50771559 | None:intergenic | 40.0% | |
| AGGGTCAATATTGCAGGTAT+CGG | + | chr1.4:50771293-50771312 | None:intergenic | 40.0% | |
| ATCTTAGCATTGCATGGCAT+AGG | - | chr1.4:50770547-50770566 | MS.gene065644:intron | 40.0% | |
| ATTTCTTCTGTGGAGATGCA+TGG | - | chr1.4:50771634-50771653 | MS.gene065644:intron | 40.0% | |
| CATTGTCAAACCTTAGATGG+CGG | - | chr1.4:50771227-50771246 | MS.gene065644:intron | 40.0% | |
| CCATCTTCATGTATTGCACA+TGG | - | chr1.4:50772386-50772405 | MS.gene065644:intron | 40.0% | |
| CCATGTGCAATACATGAAGA+TGG | + | chr1.4:50772389-50772408 | None:intergenic | 40.0% | |
| CTTCAGGTAGCAATTGTTGT+TGG | - | chr1.4:50771603-50771622 | MS.gene065644:intron | 40.0% | |
| GAACTACCAGGAGGTTAAAT+TGG | - | chr1.4:50772083-50772102 | MS.gene065644:intron | 40.0% | |
| GATGTACTGCATACCAAGTT+GGG | - | chr1.4:50771679-50771698 | MS.gene065644:intron | 40.0% | |
| GCTTGCCAAAAATATCCATG+TGG | + | chr1.4:50772895-50772914 | None:intergenic | 40.0% | |
| GGAATCTAAGAGGAAGAGAT+TGG | - | chr1.4:50769676-50769695 | MS.gene065644:CDS | 40.0% | |
| GTACATTCCCACAAACCTTA+GGG | + | chr1.4:50771312-50771331 | None:intergenic | 40.0% | |
| GTGATTAACCTTACCCAACT+TGG | + | chr1.4:50771695-50771714 | None:intergenic | 40.0% | |
| GTGCTAAAAAAACAAGGGAC+CGG | - | chr1.4:50770219-50770238 | MS.gene065644:intron | 40.0% | |
| GTTGCATTTCTGCTAGTCAT+TGG | - | chr1.4:50769823-50769842 | MS.gene065644:intron | 40.0% | |
| TACCTGCAATATTGACCCTA+AGG | - | chr1.4:50771294-50771313 | MS.gene065644:intron | 40.0% | |
| TATTGTTGGGAATTCGCTTC+CGG | - | chr1.4:50769869-50769888 | MS.gene065644:intron | 40.0% | |
| TGAGAATCAATCGAAGAGTG+TGG | - | chr1.4:50769731-50769750 | MS.gene065644:CDS | 40.0% | |
| TGTGGAACAGTGTAAGAACA+AGG | - | chr1.4:50769749-50769768 | MS.gene065644:CDS | 40.0% | |
| TGTTCCATCTGCTTAAACCA+AGG | + | chr1.4:50769849-50769868 | None:intergenic | 40.0% | |
| TTGGGAAGAAGTAGCTTCAA+TGG | - | chr1.4:50769695-50769714 | MS.gene065644:CDS | 40.0% | |
| TTTCGAGCACATATCCTTCA+GGG | - | chr1.4:50773020-50773039 | MS.gene065644:CDS | 40.0% | |
| TTTCTTCTGTGGAGATGCAT+GGG | - | chr1.4:50771635-50771654 | MS.gene065644:intron | 40.0% | |
| ! | ATATCCATGTGGTTGATGTG+GGG | + | chr1.4:50772884-50772903 | None:intergenic | 40.0% |
| ! | ATTTTCCTCGCAGAATGTCA+GGG | + | chr1.4:50773085-50773104 | None:intergenic | 40.0% |
| ! | GATATGTCGGTTGAGAAAAG+TGG | + | chr1.4:50772772-50772791 | None:intergenic | 40.0% |
| ! | GGAGCATTTGATCTGCTAAA+AGG | + | chr1.4:50770295-50770314 | None:intergenic | 40.0% |
| ! | TTGACAATGCTTTGGACTTC+AGG | + | chr1.4:50771216-50771235 | None:intergenic | 40.0% |
| !! | ATAGCGACTATCGATTCAGA+TGG | - | chr1.4:50770844-50770863 | MS.gene065644:intron | 40.0% |
| !! | GAATGGATTACCGTAGTCAT+CGG | + | chr1.4:50769424-50769443 | None:intergenic | 40.0% |
| !! | GCGAAGTAGTTTTACTTGGA+TGG | - | chr1.4:50771019-50771038 | MS.gene065644:intron | 40.0% |
| !! | GGAGTGAACTTTGACTTGTA+TGG | - | chr1.4:50771922-50771941 | MS.gene065644:intron | 40.0% |
| !! | GTAGTTTTACTTGGATGGAG+TGG | - | chr1.4:50771024-50771043 | MS.gene065644:intron | 40.0% |
| !! | TGCATCTGGTCTTTTTATGG+GGG | - | chr1.4:50773129-50773148 | MS.gene065644:CDS | 40.0% |
| !!! | TCTTTTTATGGGGGTGTTTC+AGG | - | chr1.4:50773138-50773157 | MS.gene065644:CDS | 40.0% |
| AACTGGATGTGCTTTGCTGA+TGG | - | chr1.4:50772137-50772156 | MS.gene065644:intron | 45.0% | |
| ACAGTGCCAATTTAACCTCC+TGG | + | chr1.4:50772092-50772111 | None:intergenic | 45.0% | |
| ACGGTACATCTAACGTTGTC+CGG | + | chr1.4:50770241-50770260 | None:intergenic | 45.0% | |
| ATAAGTCCTGGGTTCAAACC+CGG | + | chr1.4:50770330-50770349 | None:intergenic | 45.0% | |
| ATCAGCAAAGCACATCCAGT+TGG | + | chr1.4:50772138-50772157 | None:intergenic | 45.0% | |
| CAAACCCGGAAAAGAAGCAA+GGG | + | chr1.4:50770316-50770335 | None:intergenic | 45.0% | |
| CATCTACGTTGGTACCTTTG+AGG | + | chr1.4:50772963-50772982 | None:intergenic | 45.0% | |
| CTGAACCGTACAATAGGCAA+CGG | - | chr1.4:50772680-50772699 | MS.gene065644:intron | 45.0% | |
| CTGAATCGAGGGAATCTAAG+AGG | - | chr1.4:50769666-50769685 | MS.gene065644:CDS | 45.0% | |
| CTTAGATTGCCTGGGTGAAA+TGG | + | chr1.4:50769934-50769953 | None:intergenic | 45.0% | |
| CTTTCGAGCACATATCCTTC+AGG | - | chr1.4:50773019-50773038 | MS.gene065644:CDS | 45.0% | |
| GCTAGTTGAAGTTGGGATGT+GGG | - | chr1.4:50771856-50771875 | MS.gene065644:intron | 45.0% | |
| GCTTTGTGTGGAGAACAAGT+TGG | - | chr1.4:50773500-50773519 | MS.gene065644:CDS | 45.0% | |
| GGAGGCAGTTGCTATCTAAT+TGG | + | chr1.4:50771959-50771978 | None:intergenic | 45.0% | |
| GGAGGTCGTAATTTCTTCTG+TGG | - | chr1.4:50771624-50771643 | MS.gene065644:intron | 45.0% | |
| GGCACACTTATTGACCAAAC+TGG | - | chr1.4:50773521-50773540 | MS.gene065644:CDS | 45.0% | |
| GGTACATTCCCACAAACCTT+AGG | + | chr1.4:50771313-50771332 | None:intergenic | 45.0% | |
| GTCATATACGCCATCTACGT+TGG | + | chr1.4:50772974-50772993 | None:intergenic | 45.0% | |
| TCAAACCCGGAAAAGAAGCA+AGG | + | chr1.4:50770317-50770336 | None:intergenic | 45.0% | |
| TCATCATCAGCAAACTTGGC+CGG | + | chr1.4:50769891-50769910 | None:intergenic | 45.0% | |
| TCCTTTCTCAAGATGCCTGA+TGG | + | chr1.4:50772707-50772726 | None:intergenic | 45.0% | |
| TCTATACTCTGCTCCTACTC+CGG | + | chr1.4:50769574-50769593 | None:intergenic | 45.0% | |
| TGAACCGTACAATAGGCAAC+GGG | - | chr1.4:50772681-50772700 | MS.gene065644:intron | 45.0% | |
| TGCTAGTTGAAGTTGGGATG+TGG | - | chr1.4:50771855-50771874 | MS.gene065644:intron | 45.0% | |
| TGGATCATTGGAGTGCAAAG+AGG | - | chr1.4:50771981-50772000 | MS.gene065644:intron | 45.0% | |
| TTTAGGTAGGGCTGTACATG+TGG | - | chr1.4:50772050-50772069 | MS.gene065644:intron | 45.0% | |
| TTTCACCCAGGCAATCTAAG+AGG | - | chr1.4:50769934-50769953 | MS.gene065644:intron | 45.0% | |
| TTTGCACTCCAATGATCCAG+AGG | + | chr1.4:50771980-50771999 | None:intergenic | 45.0% | |
| ! | AAGGTCAGAAGTGCAACTCT+AGG | + | chr1.4:50772188-50772207 | None:intergenic | 45.0% |
| ! | ACTGCATACCAAGTTGGGTA+AGG | - | chr1.4:50771684-50771703 | MS.gene065644:intron | 45.0% |
| ! | AGGTGGTGATGTGTTTGGAT+TGG | + | chr1.4:50769362-50769381 | None:intergenic | 45.0% |
| ! | ATGCTCCCTTGCTTCTTTTC+CGG | - | chr1.4:50770308-50770327 | MS.gene065644:intron | 45.0% |
| ! | ATTAGTGGATCGGCACTTAC+TGG | - | chr1.4:50771265-50771284 | MS.gene065644:CDS | 45.0% |
| ! | CAGGTAGCAATTGTTGTTGG+AGG | - | chr1.4:50771606-50771625 | MS.gene065644:intron | 45.0% |
| ! | CATTTTCCTCGCAGAATGTC+AGG | + | chr1.4:50773086-50773105 | None:intergenic | 45.0% |
| ! | CGTTTGCTGAACCGTACAAT+AGG | - | chr1.4:50772674-50772693 | MS.gene065644:intron | 45.0% |
| ! | TATCCATGTGGTTGATGTGG+GGG | + | chr1.4:50772883-50772902 | None:intergenic | 45.0% |
| ! | TCAGAAGTGCAACTCTAGGA+AGG | + | chr1.4:50772184-50772203 | None:intergenic | 45.0% |
| ! | TTTCTGCTAGTCATTGGCCT+TGG | - | chr1.4:50769829-50769848 | MS.gene065644:intron | 45.0% |
| ! | TTTGGATTGGACTGAAGCTG+TGG | + | chr1.4:50769349-50769368 | None:intergenic | 45.0% |
| !! | AAACCTGTTTCTAGCGGCAA+CGG | - | chr1.4:50769537-50769556 | MS.gene065644:intron | 45.0% |
| !! | AAAGAGAGCATCTTGGTGAC+AGG | - | chr1.4:50771879-50771898 | MS.gene065644:intron | 45.0% |
| !! | ATGTGGGAAAGAGAGCATCT+TGG | - | chr1.4:50771872-50771891 | MS.gene065644:intron | 45.0% |
| !! | CGGTCAAAACCTGTTTCTAG+CGG | - | chr1.4:50769531-50769550 | MS.gene065644:intron | 45.0% |
| !! | CTCAAAGGTACCAACGTAGA+TGG | - | chr1.4:50772961-50772980 | MS.gene065644:CDS | 45.0% |
| !! | TTGGCCTTGGTTTAAGCAGA+TGG | - | chr1.4:50769842-50769861 | MS.gene065644:intron | 45.0% |
| AACTGCCTCCTCTGGATCAT+TGG | - | chr1.4:50771969-50771988 | MS.gene065644:intron | 50.0% | |
| AATAGCTTCCCGTCTTGGTG+TGG | - | chr1.4:50771493-50771512 | MS.gene065644:CDS | 50.0% | |
| AATCCATTCGACGATGACGC+TGG | - | chr1.4:50769435-50769454 | MS.gene065644:intron | 50.0% | |
| AATGCTCAGGCTGTCCTCAA+AGG | - | chr1.4:50772946-50772965 | MS.gene065644:CDS | 50.0% | |
| ACTGTACCTCCACACCAAGA+CGG | + | chr1.4:50771505-50771524 | None:intergenic | 50.0% | |
| AGTGGTGGTTGTTATCGTCG+TGG | + | chr1.4:50769254-50769273 | None:intergenic | 50.0% | |
| ATGGCCCGTTGCCTATTGTA+CGG | + | chr1.4:50772688-50772707 | None:intergenic | 50.0% | |
| ATGTTGAGTGTTTGGGCGAG+TGG | - | chr1.4:50770608-50770627 | MS.gene065644:intron | 50.0% | |
| CAGGGCTGACATATCCATAG+AGG | + | chr1.4:50773067-50773086 | None:intergenic | 50.0% | |
| CCGAAGAGCAGCAGATATGT+CGG | + | chr1.4:50772785-50772804 | None:intergenic | 50.0% | |
| CCGACATATCTGCTGCTCTT+CGG | - | chr1.4:50772782-50772801 | MS.gene065644:intron | 50.0% | |
| CGACATATCTGCTGCTCTTC+GGG | - | chr1.4:50772783-50772802 | MS.gene065644:intron | 50.0% | |
| CTGCTCTGCAGTTAATGCTC+AGG | - | chr1.4:50772933-50772952 | MS.gene065644:CDS | 50.0% | |
| GAACAACTCTCCGCCATCTA+AGG | + | chr1.4:50771240-50771259 | None:intergenic | 50.0% | |
| GATGCATGGGTAACTGCAAC+TGG | - | chr1.4:50771648-50771667 | MS.gene065644:intron | 50.0% | |
| GCCATCAGGCATCTTGAGAA+AGG | - | chr1.4:50772703-50772722 | MS.gene065644:intron | 50.0% | |
| GTTGCAATAGCTTCCCGTCT+TGG | - | chr1.4:50771488-50771507 | MS.gene065644:CDS | 50.0% | |
| GTTTACTTGACCTCCACTGC+TGG | + | chr1.4:50771191-50771210 | None:intergenic | 50.0% | |
| TAGATAGCAACTGCCTCCTC+TGG | - | chr1.4:50771961-50771980 | MS.gene065644:intron | 50.0% | |
| TCTAGACACTAGCTCCCTGA+AGG | + | chr1.4:50773037-50773056 | None:intergenic | 50.0% | |
| TGCGAGGAAAATGCCATTCC+TGG | - | chr1.4:50773093-50773112 | MS.gene065644:CDS | 50.0% | |
| TGTGATGCAACGACGTCGTA+TGG | - | chr1.4:50769495-50769514 | MS.gene065644:intron | 50.0% | |
| TTCAGGGAGCTAGTGTCTAG+AGG | - | chr1.4:50773036-50773055 | MS.gene065644:CDS | 50.0% | |
| TTCCTGCTTCCATTTCACCC+AGG | - | chr1.4:50769922-50769941 | MS.gene065644:intron | 50.0% | |
| TTTCCCCCACATCAACCACA+TGG | - | chr1.4:50772877-50772896 | MS.gene065644:CDS | 50.0% | |
| ! | TCTTTTCCGGGTTTGAACCC+AGG | - | chr1.4:50770321-50770340 | MS.gene065644:intron | 50.0% |
| ! | TGCTCCCTTGCTTCTTTTCC+GGG | - | chr1.4:50770309-50770328 | MS.gene065644:intron | 50.0% |
| !! | GTCTAGAGGTGTCACCTCTA+TGG | - | chr1.4:50773050-50773069 | MS.gene065644:CDS | 50.0% |
| ACAATAGGCAACGGGCCATC+AGG | - | chr1.4:50772689-50772708 | MS.gene065644:intron | 55.0% | |
| AGGGCTGTACATGTGGAGTG+AGG | - | chr1.4:50772057-50772076 | MS.gene065644:intron | 55.0% | |
| CAAAGTTCACTCCCCAGCTG+TGG | + | chr1.4:50771915-50771934 | None:intergenic | 55.0% | |
| CTACCAGCGTCATCGTCGAA+TGG | + | chr1.4:50769441-50769460 | None:intergenic | 55.0% | |
| CTGAAGCTGTGGAGAAGTGG+TGG | + | chr1.4:50769338-50769357 | None:intergenic | 55.0% | |
| CTGTACCTCCACACCAAGAC+GGG | + | chr1.4:50771504-50771523 | None:intergenic | 55.0% | |
| GCACTCCAATGATCCAGAGG+AGG | + | chr1.4:50771977-50771996 | None:intergenic | 55.0% | |
| GGACTGAAGCTGTGGAGAAG+TGG | + | chr1.4:50769341-50769360 | None:intergenic | 55.0% | |
| GGAGACGACACCGATGACTA+CGG | - | chr1.4:50769411-50769430 | MS.gene065644:intron | 55.0% | |
| GGAGTGAGGTCAGAACTACC+AGG | - | chr1.4:50772071-50772090 | MS.gene065644:intron | 55.0% | |
| GGTGGTTGTTATCGTCGTGG+AGG | + | chr1.4:50769251-50769270 | None:intergenic | 55.0% | |
| GTGAGGTCAGAACTACCAGG+AGG | - | chr1.4:50772074-50772093 | MS.gene065644:intron | 55.0% | |
| TGCCTGGGTGAAATGGAAGC+AGG | + | chr1.4:50769927-50769946 | None:intergenic | 55.0% | |
| ! | AGAAGTGGTGGTGAGAGTGG+TGG | + | chr1.4:50769326-50769345 | None:intergenic | 55.0% |
| ! | AGCATCTTGGTGACAGGCCA+GGG | - | chr1.4:50771885-50771904 | MS.gene065644:intron | 55.0% |
| ! | GACGGAGGTGGTGATGTGTT+TGG | + | chr1.4:50769367-50769386 | None:intergenic | 55.0% |
| ! | TGGAGAAGTGGTGGTGAGAG+TGG | + | chr1.4:50769329-50769348 | None:intergenic | 55.0% |
| !!! | GGTGGCATTGGTTTTGGTGC+TGG | - | chr1.4:50772742-50772761 | MS.gene065644:intron | 55.0% |
| CCACCGTTGCCGCTAGAAAC+AGG | + | chr1.4:50769543-50769562 | None:intergenic | 60.0% | |
| GAGAGTGGTGGTTGTGGTGG+TGG | + | chr1.4:50769314-50769333 | None:intergenic | 60.0% | |
| GCTGCTCTTCGGGCTTCAGA+GGG | - | chr1.4:50772793-50772812 | MS.gene065644:intron | 60.0% | |
| GGTGAGAGTGGTGGTTGTGG+TGG | + | chr1.4:50769317-50769336 | None:intergenic | 60.0% | |
| GGTGAGGTGCGAAGGTTTGG+TGG | + | chr1.4:50769293-50769312 | None:intergenic | 60.0% | |
| GGTGGTGAGAGTGGTGGTTG+TGG | + | chr1.4:50769263-50769282 | None:intergenic | 60.0% | |
| GGTGGTGAGGTGCGAAGGTT+TGG | + | chr1.4:50769296-50769315 | None:intergenic | 60.0% | |
| GTCAGCCCTGACATTCTGCG+AGG | - | chr1.4:50773077-50773096 | MS.gene065644:CDS | 60.0% | |
| TGCTGCTCTTCGGGCTTCAG+AGG | - | chr1.4:50772792-50772811 | MS.gene065644:intron | 60.0% | |
| ! | AGCTTCCCGTCTTGGTGTGG+AGG | - | chr1.4:50771496-50771515 | MS.gene065644:CDS | 60.0% |
| ! | GAGCATCTTGGTGACAGGCC+AGG | - | chr1.4:50771884-50771903 | MS.gene065644:intron | 60.0% |
| ! | TCTTGGTGACAGGCCAGGGA+AGG | - | chr1.4:50771889-50771908 | MS.gene065644:intron | 60.0% |
| !! | AGGTTTGGTGGAGGTGGTGG+TGG | + | chr1.4:50769281-50769300 | None:intergenic | 60.0% |
| !! | CCTGTTTCTAGCGGCAACGG+TGG | - | chr1.4:50769540-50769559 | MS.gene065644:intron | 60.0% |
| !! | CGAAGGTTTGGTGGAGGTGG+TGG | + | chr1.4:50769284-50769303 | None:intergenic | 60.0% |
| !! | GAGGTGCGAAGGTTTGGTGG+AGG | + | chr1.4:50769290-50769309 | None:intergenic | 60.0% |
| !! | GTGCGAAGGTTTGGTGGAGG+TGG | + | chr1.4:50769287-50769306 | None:intergenic | 60.0% |
| !! | GTTTCTAGCGGCAACGGTGG+AGG | - | chr1.4:50769543-50769562 | MS.gene065644:intron | 60.0% |
| !! | TGGTGGTTGTGGTGGTGGTG+AGG | + | chr1.4:50769309-50769328 | None:intergenic | 60.0% |
| GGAGTGGCTACGTCCAGCAG+TGG | - | chr1.4:50771175-50771194 | MS.gene065644:intron | 65.0% | |
| GTGGCTACGTCCAGCAGTGG+AGG | - | chr1.4:50771178-50771197 | MS.gene065644:intron | 65.0% | |
| ! | GGTGTCGTCTCCGTCGTCGT+CGG | + | chr1.4:50769403-50769422 | None:intergenic | 65.0% |
| !! | GGAGGTGGTGGTGGTGAGAG+TGG | + | chr1.4:50769272-50769291 | None:intergenic | 65.0% |
| !! | GGTGGTGGTGGTGAGAGTGG+TGG | + | chr1.4:50769269-50769288 | None:intergenic | 65.0% |
| !! | GTGGTGGTGGTGAGGTGCGA+AGG | + | chr1.4:50769301-50769320 | None:intergenic | 65.0% |
| AGGCCAGGGAAGGCCACAGC+TGG | - | chr1.4:50771899-50771918 | MS.gene065644:intron | 70.0% | |
| GCCAGGGAAGGCCACAGCTG+GGG | - | chr1.4:50771901-50771920 | MS.gene065644:intron | 70.0% | |
| GGCCAGGGAAGGCCACAGCT+GGG | - | chr1.4:50771900-50771919 | MS.gene065644:intron | 70.0% | |
| GTCTCCGTCGTCGTCGGCGA+CGG | + | chr1.4:50769397-50769416 | None:intergenic | 70.0% | |
| TCCCCAGCTGTGGCCTTCCC+TGG | + | chr1.4:50771905-50771924 | None:intergenic | 70.0% | |
| ! | GGCAACGGTGGAGGAAGCGC+CGG | - | chr1.4:50769552-50769571 | MS.gene065644:intron | 70.0% |
| !! | GGTGGAGGAAGCGCCGGAGT+AGG | - | chr1.4:50769558-50769577 | MS.gene065644:intron | 70.0% |
| TCCGTCGTCGTCGGCGACGG+CGG | + | chr1.4:50769394-50769413 | None:intergenic | 75.0% | |
| ! | GACGGCGGCGGAGACGGAGG+TGG | + | chr1.4:50769379-50769398 | None:intergenic | 80.0% |
| ! | GCCGCCGTCGCCGACGACGA+CGG | - | chr1.4:50769390-50769409 | MS.gene065644:intron | 80.0% |
| ! | GTCGGCGACGGCGGCGGAGA+CGG | + | chr1.4:50769385-50769404 | None:intergenic | 80.0% |
| ! | GTCGTCGTCGGCGACGGCGG+CGG | + | chr1.4:50769391-50769410 | None:intergenic | 80.0% |
| ! | GGCGACGGCGGCGGAGACGG+AGG | + | chr1.4:50769382-50769401 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 50769213 | 50773556 | 50769213 | ID=MS.gene065644 |
| chr1.4 | mRNA | 50769213 | 50773556 | 50769213 | ID=MS.gene065644.t1;Parent=MS.gene065644 |
| chr1.4 | exon | 50772814 | 50773556 | 50772814 | ID=MS.gene065644.t1.exon1;Parent=MS.gene065644.t1 |
| chr1.4 | CDS | 50772814 | 50773556 | 50772814 | ID=cds.MS.gene065644.t1;Parent=MS.gene065644.t1 |
| chr1.4 | exon | 50771454 | 50771598 | 50771454 | ID=MS.gene065644.t1.exon2;Parent=MS.gene065644.t1 |
| chr1.4 | CDS | 50771454 | 50771598 | 50771454 | ID=cds.MS.gene065644.t1;Parent=MS.gene065644.t1 |
| chr1.4 | exon | 50771252 | 50771305 | 50771252 | ID=MS.gene065644.t1.exon3;Parent=MS.gene065644.t1 |
| chr1.4 | CDS | 50771252 | 50771305 | 50771252 | ID=cds.MS.gene065644.t1;Parent=MS.gene065644.t1 |
| chr1.4 | exon | 50771069 | 50771160 | 50771069 | ID=MS.gene065644.t1.exon4;Parent=MS.gene065644.t1 |
| chr1.4 | CDS | 50771069 | 50771160 | 50771069 | ID=cds.MS.gene065644.t1;Parent=MS.gene065644.t1 |
| chr1.4 | exon | 50769955 | 50770190 | 50769955 | ID=MS.gene065644.t1.exon5;Parent=MS.gene065644.t1 |
| chr1.4 | CDS | 50769955 | 50770190 | 50769955 | ID=cds.MS.gene065644.t1;Parent=MS.gene065644.t1 |
| chr1.4 | exon | 50769655 | 50769825 | 50769655 | ID=MS.gene065644.t1.exon6;Parent=MS.gene065644.t1 |
| chr1.4 | CDS | 50769655 | 50769825 | 50769655 | ID=cds.MS.gene065644.t1;Parent=MS.gene065644.t1 |
| chr1.4 | exon | 50769213 | 50769310 | 50769213 | ID=MS.gene065644.t1.exon7;Parent=MS.gene065644.t1 |
| chr1.4 | CDS | 50769213 | 50769310 | 50769213 | ID=cds.MS.gene065644.t1;Parent=MS.gene065644.t1 |
| Gene Sequence |
| Protein sequence |
