AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene054004


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene054004.t1 MTR_2g088850 98.540 274 4 0 1 274 1 274 0.0 551
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene054004.t1 AT3G21865 66.667 276 73 3 14 274 11 282 2.83e-120 345

Find 0 sgRNAs with CRISPR-Local

Find 267 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGATAAACAATAAAAAAAT+GGG - 15116:13522-13541 MS.gene054004:intergenic 10.0%
!! TAAGATAAACAATAAAAAAA+TGG - 15116:13523-13542 MS.gene054004:intergenic 10.0%
!!! TTAAATTTTTAATCTACTTA+AGG + 15116:12915-12934 MS.gene054004:intron 10.0%
!! TTATTGTTTATCTTAATAAG+TGG + 15116:13528-13547 MS.gene054004:intron 15.0%
!!! TATTTTTTGTGATATATGAT+TGG + 15116:11472-11491 MS.gene054004:intron 15.0%
!!! TGAAATTTTGATATTTTTGA+TGG + 15116:11516-11535 MS.gene054004:intron 15.0%
!!! TTTTGTTAGAAACTTTAAAT+GGG + 15116:11622-11641 MS.gene054004:intron 15.0%
!!! TTTTTGTTAGAAACTTTAAA+TGG + 15116:11621-11640 MS.gene054004:intron 15.0%
!!! TTTTTTTTGCTTTTAATGTT+GGG + 15116:11645-11664 MS.gene054004:intron 15.0%
!! AAACTATAAGAGAAACTATT+AGG + 15116:12098-12117 MS.gene054004:intron 20.0%
!! AAAGCTATAAAAAAATACAG+CGG - 15116:12659-12678 MS.gene054004:intergenic 20.0%
!! AATAAGAATCTCATTACTTT+AGG + 15116:13172-13191 MS.gene054004:intron 20.0%
!! AATCATTCAATCAACAATAA+AGG - 15116:11554-11573 MS.gene054004:intergenic 20.0%
!! AATTTCATATTCTGAATCTT+AGG - 15116:14195-14214 MS.gene054004:intergenic 20.0%
!! ACCTACTATGTATTTAAATA+AGG + 15116:11737-11756 MS.gene054004:intron 20.0%
!! AGTTATTTATTTAAAAGCGA+AGG + 15116:13234-13253 MS.gene054004:intron 20.0%
!! ATAAGAATCTCATTACTTTA+GGG + 15116:13173-13192 MS.gene054004:intron 20.0%
!! ATATTCGTAACATTGAAAAA+TGG - 15116:14100-14119 MS.gene054004:intergenic 20.0%
!! ATCATTCAATCAACAATAAA+GGG - 15116:11553-11572 MS.gene054004:intergenic 20.0%
!! ATTAGAAAGAAACAATGATA+TGG - 15116:15961-15980 MS.gene054004:intergenic 20.0%
!! ATTTCATATTCTGAATCTTA+GGG - 15116:14194-14213 MS.gene054004:intergenic 20.0%
!! CAATAATTAGATAAGAGTAA+AGG - 15116:15160-15179 MS.gene054004:intergenic 20.0%
!! CTATGTATTTAAATAAGGTA+TGG + 15116:11742-11761 MS.gene054004:intron 20.0%
!! TAATCTATAAAGCTATAAAC+AGG - 15116:12967-12986 MS.gene054004:intergenic 20.0%
!! TAGAATCTATATATTTGTGA+AGG + 15116:15374-15393 MS.gene054004:intron 20.0%
!! TATATGATAATAGAACATGA+TGG + 15116:12158-12177 MS.gene054004:intron 20.0%
!! TCACAAAAGTTGTTTAAAAA+TGG - 15116:14274-14293 MS.gene054004:intergenic 20.0%
!! TTACATTCTATCTTTATGTA+TGG + 15116:14742-14761 MS.gene054004:intron 20.0%
!!! AAATGATCAATGTAATGTTT+TGG + 15116:11782-11801 MS.gene054004:intron 20.0%
!!! AAATTTAAACTCTAAGACAA+TGG - 15116:12903-12922 MS.gene054004:intergenic 20.0%
!!! ACCTTATTTAAATACATAGT+AGG - 15116:11741-11760 MS.gene054004:intergenic 20.0%
!!! ATAAAACAAAAGTATACGAA+AGG - 15116:13822-13841 MS.gene054004:intergenic 20.0%
!!! ATCATTCCTCTTTTTTTTTA+GGG + 15116:14489-14508 MS.gene054004:intron 20.0%
!!! ATGATATTGTACTTGTTATT+AGG + 15116:12313-12332 MS.gene054004:intron 20.0%
!!! GTTTTTTTTGCTTTTAATGT+TGG + 15116:11644-11663 MS.gene054004:intron 20.0%
!!! TAATGTTTTGGTCTTTTTTT+TGG + 15116:11794-11813 MS.gene054004:intron 20.0%
!!! TATCATTCCTCTTTTTTTTT+AGG + 15116:14488-14507 MS.gene054004:intron 20.0%
!!! TCACAAAAGTTGTTTAAAAT+TGG + 15116:14456-14475 MS.gene054004:intron 20.0%
!!! TCTAAAGGTAATCTTTAAAA+TGG - 15116:15132-15151 MS.gene054004:intergenic 20.0%
!!! TGATATTTTTGATGGATTTT+TGG + 15116:11524-11543 MS.gene054004:intron 20.0%
!!! TTATTGTTGATTGAATGATT+AGG + 15116:11554-11573 MS.gene054004:intron 20.0%
!!! TTCATTTTTACAGAATCATT+CGG - 15116:14133-14152 MS.gene054004:intergenic 20.0%
! AAAACAAACTTTCACTCTTT+AGG - 15116:11603-11622 MS.gene054004:intergenic 25.0%
! AAATAAGGTATGGTTTAAGT+TGG + 15116:11752-11771 MS.gene054004:intron 25.0%
! AAGGTTAAATTAACATGTCA+TGG + 15116:12934-12953 MS.gene054004:intron 25.0%
! AATAACCATAAAACTAAGTC+TGG - 15116:12817-12836 MS.gene054004:intergenic 25.0%
! AATTCTGAATCATTAAGCAA+AGG - 15116:12604-12623 MS.gene054004:intergenic 25.0%
! AGAAAAAAACACAATGTTTG+AGG - 15116:14865-14884 MS.gene054004:intergenic 25.0%
! ATAGATTCTAGATTCTAGAT+AGG - 15116:15364-15383 MS.gene054004:intergenic 25.0%
! ATGATTCTGTAAAAATGAAC+TGG + 15116:14134-14153 MS.gene054004:intron 25.0%
! ATTCTGTGATTTATATCTCA+TGG + 15116:13948-13967 MS.gene054004:CDS 25.0%
! ATTTCTCCCTAAAAAAAAAG+AGG - 15116:14498-14517 MS.gene054004:intergenic 25.0%
! CAAAAGTAGAAAAATTGTCT+TGG - 15116:13459-13478 MS.gene054004:intergenic 25.0%
! CATGATGAGTGATTAATATA+TGG - 15116:14015-14034 MS.gene054004:intergenic 25.0%
! CTATGTTTATGTTTCTCTTT+AGG + 15116:13287-13306 MS.gene054004:intron 25.0%
! GACTTGTAGATTATGTATTA+AGG + 15116:12021-12040 MS.gene054004:intron 25.0%
! TAAGAATCTCATTACTTTAG+GGG + 15116:13174-13193 MS.gene054004:intron 25.0%
! TAGAATTTAATTACCATGCA+AGG + 15116:15298-15317 MS.gene054004:intron 25.0%
! TATCAAAATAGAGGACAAAA+AGG - 15116:15745-15764 MS.gene054004:intergenic 25.0%
! TCCAATAGAATGATGAAAAA+AGG - 15116:11420-11439 MS.gene054004:intergenic 25.0%
! TGAGATGTTACAAAATTAGA+TGG + 15116:15599-15618 MS.gene054004:intron 25.0%
! TGATTCTGTAAAAATGAACT+GGG + 15116:14135-14154 MS.gene054004:intron 25.0%
!! AGTTTCTCTTATAGTTTTTC+AGG - 15116:12095-12114 MS.gene054004:intergenic 25.0%
!! ATCTTAGGGTAAGATATTTT+TGG - 15116:14180-14199 MS.gene054004:intergenic 25.0%
!! ATTCCAATCATATTTTACCA+TGG - 15116:15430-15449 MS.gene054004:intergenic 25.0%
!! CAAGACAATTTTTCTACTTT+TGG + 15116:13457-13476 MS.gene054004:intron 25.0%
!! TATGTTTCTCTTTAGGTTAA+AGG + 15116:13294-13313 MS.gene054004:intron 25.0%
!! TTTATGATCTTTTCCTAGTT+TGG + 15116:14561-14580 MS.gene054004:intron 25.0%
!!! ATCATAAGAAATGTCGATTT+GGG + 15116:12871-12890 MS.gene054004:intron 25.0%
AAACATAAGTATGCAGCAAT+CGG - 15116:15714-15733 MS.gene054002:intergenic 30.0%
AACAACATTAAAGAGAGAGT+TGG + 15116:11928-11947 MS.gene054004:intron 30.0%
AACTTATTGGTCATAATAGC+CGG - 15116:13722-13741 MS.gene054004:intergenic 30.0%
AAGTACAATATCATGAGCTT+TGG - 15116:12307-12326 MS.gene054004:intergenic 30.0%
AATATTATAACACGACACCA+TGG + 15116:15410-15429 MS.gene054004:intron 30.0%
AATCATTAAGCAAAGGAAAG+TGG - 15116:12597-12616 MS.gene054004:intergenic 30.0%
AATGGTAAAAGATGTTTCTC+AGG - 15116:15114-15133 MS.gene054004:intergenic 30.0%
ACAACATTAAAGAGAGAGTT+GGG + 15116:11929-11948 MS.gene054004:intron 30.0%
ACACCATGGTAAAATATGAT+TGG + 15116:15424-15443 MS.gene054004:intron 30.0%
AGATCTAGAGATTAATGAGT+TGG + 15116:12123-12142 MS.gene054004:intron 30.0%
AGTATAAAAAAGTAGTGCAC+AGG - 15116:15453-15472 MS.gene054004:intergenic 30.0%
ATAAAACATCATACCTTGAC+TGG - 15116:12566-12585 MS.gene054004:intergenic 30.0%
ATAGTAACATACAGCTAACT+GGG - 15116:15877-15896 MS.gene054004:intergenic 30.0%
ATCATTAAGCAAAGGAAAGT+GGG - 15116:12596-12615 MS.gene054004:intergenic 30.0%
ATGACCAATAAGTTGTATGT+AGG + 15116:13728-13747 MS.gene054004:intron 30.0%
ATTAAGGAGAGTAGATTAGA+TGG + 15116:12037-12056 MS.gene054004:intron 30.0%
ATTAGGATATTCGCACTATT+GGG + 15116:12330-12349 MS.gene054004:intron 30.0%
CACACACTTCGTATTTATAA+TGG - 15116:13091-13110 MS.gene054004:intergenic 30.0%
CTTTACCTTCAGATGAATTA+CGG + 15116:12510-12529 MS.gene054004:CDS 30.0%
GTCTTATGTAATGAACTTGA+TGG + 15116:14034-14053 MS.gene054004:intron 30.0%
TATAGTAACATACAGCTAAC+TGG - 15116:15878-15897 MS.gene054004:intergenic 30.0%
TATTAGGATATTCGCACTAT+TGG + 15116:12329-12348 MS.gene054004:intron 30.0%
TGTAAAAATGAACTGGGATA+TGG + 15116:14141-14160 MS.gene054004:intron 30.0%
TTCGAACTAAATTTGATCTC+AGG + 15116:14668-14687 MS.gene054004:intron 30.0%
TTTACCTTCAGATGAATTAC+GGG + 15116:12511-12530 MS.gene054004:CDS 30.0%
! AAATGAGCTTTTATGTGTCA+TGG + 15116:11687-11706 MS.gene054004:intron 30.0%
! GATCATAAGAAATGTCGATT+TGG + 15116:12870-12889 MS.gene054004:intron 30.0%
! GTCATGGTTTTTGTCAAATT+GGG + 15116:11703-11722 MS.gene054004:intron 30.0%
! TAATGAGTTGGATCGAAATA+TGG + 15116:12135-12154 MS.gene054004:intron 30.0%
! TCATGGTTTTTGTCAAATTG+GGG + 15116:11704-11723 MS.gene054004:intron 30.0%
! TGTCATGGTTTTTGTCAAAT+TGG + 15116:11702-11721 MS.gene054004:intron 30.0%
!! ATGGTGTCGTGTTATAATAT+TGG - 15116:15411-15430 MS.gene054004:intergenic 30.0%
!! TTTAAACTCTAAGACAATGG+TGG - 15116:12900-12919 MS.gene054004:intergenic 30.0%
!!! CATAGCTTGTATTTTAAAGC+TGG - 15116:13272-13291 MS.gene054004:intergenic 30.0%
!!! CTTTTTTCGTCTCTTCTTAT+TGG - 15116:14432-14451 MS.gene054004:intergenic 30.0%
!!! GCCTTTTTTCATCATTCTAT+TGG + 15116:11416-11435 MS.gene054004:intron 30.0%
!!! GCTTTTGTTACTTTCAAGAT+CGG + 15116:11343-11362 MS.gene054004:CDS 30.0%
!!! TGTGCACTACTTTTTTATAC+TGG + 15116:15452-15471 MS.gene054004:intron 30.0%
!!! TTTTGGAGCATGTGTAAATA+AGG + 15116:11811-11830 MS.gene054004:intron 30.0%
AACAACAAATCATGTTGCAG+AGG + 15116:15985-16004 MS.gene054004:intron 35.0%
ACTTATTGGTCATAATAGCC+GGG - 15116:13721-13740 MS.gene054004:intergenic 35.0%
AGAGTAAAGGTTCTCTCTAA+AGG - 15116:15147-15166 MS.gene054004:intergenic 35.0%
ATAGTTGCGTATAAACTGGA+TGG + 15116:13618-13637 MS.gene054004:intron 35.0%
ATCCACAAACATTCATGCAT+TGG - 15116:12630-12649 MS.gene054004:intergenic 35.0%
ATGCACTCTTTATGTAGTAG+TGG + 15116:12783-12802 MS.gene054004:intron 35.0%
ATTGGTTAAGCAGCTAAAAG+AGG + 15116:13374-13393 MS.gene054004:intron 35.0%
CAACATTAAAGAGAGAGTTG+GGG + 15116:11930-11949 MS.gene054004:intron 35.0%
CCAAAGAAAAGTTCCAAAGA+TGG - 15116:16080-16099 MS.gene054004:intergenic 35.0%
CGATATAGTTGCGTATAAAC+TGG + 15116:13614-13633 MS.gene054004:intron 35.0%
GATTGAATGATTAGGAACCA+GGG + 15116:11562-11581 MS.gene054004:intron 35.0%
GGTATGGGATATCAAAATAG+AGG - 15116:15754-15773 MS.gene054004:intergenic 35.0%
GTCACCTACATACAACTTAT+TGG - 15116:13735-13754 MS.gene054004:intergenic 35.0%
GTGATTTATATCTCATGGAC+CGG + 15116:13953-13972 MS.gene054004:CDS 35.0%
TAGCACAAATTCAAATGCGT+CGG + 15116:12469-12488 MS.gene054004:CDS 35.0%
TAGTTGCGTATAAACTGGAT+GGG + 15116:13619-13638 MS.gene054004:intron 35.0%
TGACAAGATATAACTCTTGC+AGG - 15116:15577-15596 MS.gene054004:intergenic 35.0%
TGATTGAATGATTAGGAACC+AGG + 15116:11561-11580 MS.gene054004:intron 35.0%
TGATTTATATCTCATGGACC+GGG + 15116:13954-13973 MS.gene054004:CDS 35.0%
TGTAAACTACAGCACACAAA+AGG - 15116:14983-15002 MS.gene054004:intergenic 35.0%
TTAGGATATTCGCACTATTG+GGG + 15116:12331-12350 MS.gene054004:intron 35.0%
TTCGTCAATTAGAACCAGAT+TGG + 15116:15823-15842 MS.gene054004:CDS 35.0%
TTTGACTGTGAACATTTGCA+CGG + 15116:15065-15084 MS.gene054004:intron 35.0%
TTTGTTTGACCTATGTTTCC+CGG + 15116:13700-13719 MS.gene054004:intron 35.0%
! AGGAGATGGTAATTTCTAGA+AGG - 15116:12848-12867 MS.gene054004:intergenic 35.0%
! ATATGTTTGTTGCCATTTGC+TGG + 15116:15504-15523 MS.gene054004:intron 35.0%
! GCAGTTCGTTCTGTTTTATA+AGG - 15116:16038-16057 MS.gene054004:intergenic 35.0%
! GCTACAGATCACAATTTTGT+CGG - 15116:15636-15655 MS.gene054004:intergenic 35.0%
! TAATTAGTAAGCACTAGCCT+AGG - 15116:13043-13062 MS.gene054004:intergenic 35.0%
!! TTGCTTTTAATGTTGGGTGT+GGG + 15116:11651-11670 MS.gene054004:intron 35.0%
!! TTTGCTTTTAATGTTGGGTG+TGG + 15116:11650-11669 MS.gene054004:intron 35.0%
!!! AATTTTTTCAGCCAACCTTG+GGG + 15116:12704-12723 MS.gene054004:intron 35.0%
!!! CATCAGAATTTTAGGTTCCA+AGG - 15116:15554-15573 MS.gene054004:intergenic 35.0%
!!! CCATCTTTGGAACTTTTCTT+TGG + 15116:16077-16096 MS.gene054004:CDS 35.0%
!!! GAATTTTTTCAGCCAACCTT+GGG + 15116:12703-12722 MS.gene054004:intron 35.0%
!!! GTGTTCCAGACTTAGTTTTA+TGG + 15116:12809-12828 MS.gene054004:intron 35.0%
!!! TGAATTTTTTCAGCCAACCT+TGG + 15116:12702-12721 MS.gene054004:intron 35.0%
AAGTTAACCACCTTCTTGCT+GGG + 15116:14891-14910 MS.gene054004:intron 40.0%
AGAGAACCTGCATATAGGTA+TGG - 15116:15770-15789 MS.gene054004:intergenic 40.0%
AGAGTAGCAAGAGGAATACT+AGG - 15116:14694-14713 MS.gene054004:intergenic 40.0%
AGATCTCCTAATCCTACACA+AGG + 15116:12401-12420 MS.gene054004:CDS 40.0%
AGCCAATGCATGAATGTTTG+TGG + 15116:12625-12644 MS.gene054004:intron 40.0%
AGCTAACTGGGTGACAATTT+CGG - 15116:15865-15884 MS.gene054004:intergenic 40.0%
AGGAGAGTAGATTAGATGGA+AGG + 15116:12041-12060 MS.gene054004:intron 40.0%
ATGTAGCTAATCCCACTTAG+TGG + 15116:12194-12213 MS.gene054004:intron 40.0%
CAACAATACTTCTAGCACAG+AGG - 15116:13917-13936 MS.gene054004:intergenic 40.0%
CAGTATGTGTGTTCCAAACT+AGG - 15116:14577-14596 MS.gene054004:intergenic 40.0%
CCATGCAAGGACAATGTAAA+AGG + 15116:15311-15330 MS.gene054004:intron 40.0%
CCTAGAGTATACAACTTCCT+AGG + 15116:13023-13042 MS.gene054004:intron 40.0%
CCTAGGAAGTTGTATACTCT+AGG - 15116:13026-13045 MS.gene054004:intergenic 40.0%
GAAGTTGAGTGAAGGAAGAA+AGG + 15116:12741-12760 MS.gene054004:CDS 40.0%
GAGAACCTGCATATAGGTAT+GGG - 15116:15769-15788 MS.gene054004:intergenic 40.0%
GATATCCCATACCTATATGC+AGG + 15116:15761-15780 MS.gene054004:intron 40.0%
GATCTCCTAATCCTACACAA+GGG + 15116:12402-12421 MS.gene054004:CDS 40.0%
GGTTGTTAATTATCCAACCC+TGG - 15116:11582-11601 MS.gene054004:intergenic 40.0%
TAATCCCACTTAGTGGGATA+AGG + 15116:12201-12220 MS.gene054004:intron 40.0%
TCATAATAGCCGGGAAACAT+AGG - 15116:13712-13731 MS.gene054004:intergenic 40.0%
TCGACATTTCTTATGATCGC+AGG - 15116:12868-12887 MS.gene054004:intergenic 40.0%
TGTAGCTAATCCCACTTAGT+GGG + 15116:12195-12214 MS.gene054004:intron 40.0%
TTGTAGCGTTAGAAGAAGCA+GGG + 15116:14788-14807 MS.gene054004:CDS 40.0%
TTTCACCTCATCAAACGCTT+TGG + 15116:11319-11338 MS.gene054004:CDS 40.0%
TTTCTTATGATCGCAGGAGA+TGG - 15116:12862-12881 MS.gene054004:intergenic 40.0%
TTTGAATTTGTGCTAGCTCC+AGG - 15116:12464-12483 MS.gene054004:intergenic 40.0%
! CCTTTTACATTGTCCTTGCA+TGG - 15116:15314-15333 MS.gene054004:intergenic 40.0%
! CTGTTGCGATTGTTTTCACT+TGG + 15116:12369-12388 MS.gene054004:CDS 40.0%
! CTTGCAGGCATCAGAATTTT+AGG - 15116:15562-15581 MS.gene054004:intergenic 40.0%
! TGGGAATACTTGATGACATG+AGG + 15116:13638-13657 MS.gene054004:intron 40.0%
! TTGCGATTGTTTTCACTTGG+AGG + 15116:12372-12391 MS.gene054004:CDS 40.0%
! TTTGTGTCGATATGCCAATC+TGG - 15116:15840-15859 MS.gene054004:intergenic 40.0%
!! ACTAAGTGGGATTAGCTACA+TGG - 15116:12195-12214 MS.gene054004:intergenic 40.0%
!! CTCTGTGCTAGAAGTATTGT+TGG + 15116:13915-13934 MS.gene054004:CDS 40.0%
!! CTGTTTTATAAGGCGCTATG+TGG - 15116:16028-16047 MS.gene054004:intergenic 40.0%
!! GAAGGTAAAGAAGCATCAGA+AGG - 15116:12500-12519 MS.gene054004:intergenic 40.0%
!! TGCTCTTTTCAAGACATCCT+TGG + 15116:15534-15553 MS.gene054004:intron 40.0%
ACCAATGGGAGAAAAGATGG+TGG + 15116:11957-11976 MS.gene054004:intron 45.0%
AGACCATGCTTAGGTGGTTT+GGG + 15116:11980-11999 MS.gene054004:intron 45.0%
AGCACCAATGGGAGAAAAGA+TGG + 15116:11954-11973 MS.gene054004:intron 45.0%
AGCGTTTGATGAGGTGAAAG+AGG - 15116:11318-11337 MS.gene054004:intergenic 45.0%
AGTCAGATCACTAGTGGTAG+AGG + 15116:12065-12084 MS.gene054004:intron 45.0%
CTTGTAGCGTTAGAAGAAGC+AGG + 15116:14787-14806 MS.gene054004:CDS 45.0%
GAAGGTAGTCAGATCACTAG+TGG + 15116:12059-12078 MS.gene054004:intron 45.0%
GAAGTTAACCACCTTCTTGC+TGG + 15116:14890-14909 MS.gene054004:intron 45.0%
GAATGATTAGGAACCAGGGT+TGG + 15116:11566-11585 MS.gene054004:intron 45.0%
GAGCATATACAGCCAGCAAA+TGG - 15116:15519-15538 MS.gene054004:intergenic 45.0%
GCTAACTGGGTGACAATTTC+GGG - 15116:15864-15883 MS.gene054004:intergenic 45.0%
GCTGAAGAGAACCTGCATAT+AGG - 15116:15775-15794 MS.gene054004:intergenic 45.0%
GGTATTCACTTCAGGTGGTT+TGG + 15116:14810-14829 MS.gene054004:CDS 45.0%
TCTTCTTGGAGTGATCCTTG+AGG + 15116:13761-13780 MS.gene054004:CDS 45.0%
TGAGTTCTTTCAGCCAGTCA+AGG + 15116:12550-12569 MS.gene054004:CDS 45.0%
TGCTACAACAGAGTAGCAAG+AGG - 15116:14703-14722 MS.gene054004:intergenic 45.0%
TGTAGCGTTAGAAGAAGCAG+GGG + 15116:14789-14808 MS.gene054004:CDS 45.0%
TGTGCCCGTAATTCATCTGA+AGG - 15116:12518-12537 MS.gene054004:intergenic 45.0%
TGTGTTCAGTGCTCCATCTT+TGG + 15116:16064-16083 MS.gene054004:CDS 45.0%
TTAGTGGGATAAGGCTCTCT+TGG + 15116:12210-12229 MS.gene054004:intron 45.0%
! AAGCACCAAAGCGTTTGATG+AGG - 15116:11327-11346 MS.gene054004:intergenic 45.0%
! AGAGCCTTATCCCACTAAGT+GGG - 15116:12208-12227 MS.gene054004:intergenic 45.0%
! TCCACCATCTTTTCTCCCAT+TGG - 15116:11961-11980 MS.gene054004:intergenic 45.0%
!! AGGTGGTTTGGTTAAGGACA+AGG + 15116:14822-14841 MS.gene054004:CDS 45.0%
!! CACTTCAGGTGGTTTGGTTA+AGG + 15116:14816-14835 MS.gene054004:CDS 45.0%
!! GAGGTGAAAGAGGTCTTGTT+TGG - 15116:11308-11327 MS.gene054004:intergenic 45.0%
!! GTGAAAGAGGTCTTGTTTGG+AGG - 15116:11305-11324 MS.gene054004:intergenic 45.0%
!! TGGAGCACTGAACACATTAG+CGG - 15116:16060-16079 MS.gene054004:intergenic 45.0%
!!! TTAATTTGTTATATTTTTTT+AGG + 15116:13325-13344 MS.gene054004:intron 5.0%
AAGTAGTCCAGAGGAGCTTC+AGG + 15116:13785-13804 MS.gene054004:CDS 50.0%
AGAATGTTAACCAGTGCCCC+CGG + 15116:13348-13367 MS.gene054004:intron 50.0%
AGAGAGAGAGAGAGAGAGAG+AGG - 15116:11388-11407 MS.gene054004:intergenic 50.0%
AGAGTTGGGGTAGCACCAAT+GGG + 15116:11943-11962 MS.gene054004:intron 50.0%
ATATCTCATGGACCGGGTTC+TGG + 15116:13960-13979 MS.gene054004:CDS 50.0%
ATCCTACACAAGGGAGGCAA+CGG + 15116:12411-12430 MS.gene054004:CDS 50.0%
ATCGTTGTCACCACCAGACA+CGG - 15116:11278-11297 MS.gene054004:intergenic 50.0%
ATGCCCAAACCACCTAAGCA+TGG - 15116:11986-12005 MS.gene054004:intergenic 50.0%
ATTCCTTAACAAGTGCCCCG+GGG + 15116:13480-13499 MS.gene054004:intron 50.0%
CCTCTGGACTACTTTCCTCA+AGG - 15116:13779-13798 MS.gene054004:intergenic 50.0%
CCTTGAGGAAAGTAGTCCAG+AGG + 15116:13776-13795 MS.gene054004:CDS 50.0%
CTCCTAATCCTACACAAGGG+AGG + 15116:12405-12424 MS.gene054004:CDS 50.0%
GAGACCATGCTTAGGTGGTT+TGG + 15116:11979-11998 MS.gene054004:intron 50.0%
GATCACTCCAAGAAGACGAC+AGG - 15116:13757-13776 MS.gene054004:intergenic 50.0%
GATTCCTTAACAAGTGCCCC+GGG + 15116:13479-13498 MS.gene054004:intron 50.0%
GGATATTCGCACTATTGGGG+CGG + 15116:12334-12353 MS.gene054004:intron 50.0%
GGATTCCTTAACAAGTGCCC+CGG + 15116:13478-13497 MS.gene054004:intron 50.0%
GGTGGTGCATCTAGTAATCC+TGG + 15116:12443-12462 MS.gene054004:CDS 50.0%
GTGAGGCAGAAGTTGAGTGA+AGG + 15116:12733-12752 MS.gene054004:CDS 50.0%
GTTGGGTGTGGGTAGAAACT+AGG + 15116:11662-11681 MS.gene054004:intron 50.0%
TAGCTGCTTAACCAATGCCC+CGG - 15116:13370-13389 MS.gene054004:intergenic 50.0%
TAGGTGACCTGTCGTCTTCT+TGG + 15116:13747-13766 MS.gene054004:intron 50.0%
TGCCTCCCTTGTGTAGGATT+AGG - 15116:12410-12429 MS.gene054004:intergenic 50.0%
TTTCACACCTGAAGCTCCTC+TGG - 15116:13795-13814 MS.gene054004:intergenic 50.0%
! CTCTTCAGCAGCACTGAGAA+TGG + 15116:15786-15805 MS.gene054004:CDS 50.0%
! GAGAGCCTTATCCCACTAAG+TGG - 15116:12209-12228 MS.gene054004:intergenic 50.0%
!! AGATGGTGGAGACCATGCTT+AGG + 15116:11971-11990 MS.gene054004:intron 50.0%
!! GAAGCAGGGGTATTCACTTC+AGG + 15116:14802-14821 MS.gene054004:CDS 50.0%
AACACTGCCCAGCAAGAAGG+TGG - 15116:14901-14920 MS.gene054004:intergenic 55.0%
AATGTTAACCAGTGCCCCCG+GGG + 15116:13350-13369 MS.gene054004:intron 55.0%
AGCTGCTTAACCAATGCCCC+GGG - 15116:13369-13388 MS.gene054004:intergenic 55.0%
AGGCAACGGAAAAGGCAAGG+TGG + 15116:12425-12444 MS.gene054004:CDS 55.0%
CAACCTTGGGGCAGATAGTG+AGG + 15116:12716-12735 MS.gene054004:CDS 55.0%
CACAAGGGAGGCAACGGAAA+AGG + 15116:12417-12436 MS.gene054004:CDS 55.0%
CGCTTTCGTCATCCAGAACC+CGG - 15116:13975-13994 MS.gene054004:intergenic 55.0%
CTCACTATCTGCCCCAAGGT+TGG - 15116:12718-12737 MS.gene054004:intergenic 55.0%
GAATGTTAACCAGTGCCCCC+GGG + 15116:13349-13368 MS.gene054004:intron 55.0%
GAGAGTTGGGGTAGCACCAA+TGG + 15116:11942-11961 MS.gene054004:intron 55.0%
TCTTGTTAACCAGTGCCCCC+GGG - 15116:13499-13518 MS.gene054004:intergenic 55.0%
TGCAACACTGCCCAGCAAGA+AGG - 15116:14904-14923 MS.gene054004:intergenic 55.0%
TGGTGGAGACCATGCTTAGG+TGG + 15116:11974-11993 MS.gene054004:intron 55.0%
TTCCGTTGCCTCCCTTGTGT+AGG - 15116:12416-12435 MS.gene054004:intergenic 55.0%
TTCCTTAACAAGTGCCCCGG+GGG + 15116:13481-13500 MS.gene054004:intron 55.0%
! GTCTTGTTAACCAGTGCCCC+CGG - 15116:13500-13519 MS.gene054004:intergenic 55.0%
!! GCAGGGGTATTCACTTCAGG+TGG + 15116:14805-14824 MS.gene054004:CDS 55.0%
!! GGTTCTGGATGACGAAAGCG+AGG + 15116:13975-13994 MS.gene054004:CDS 55.0%
CTGCCTCACTATCTGCCCCA+AGG - 15116:12722-12741 MS.gene054004:intergenic 60.0%
CTGCTTAACCAATGCCCCGG+GGG - 15116:13367-13386 MS.gene054004:intergenic 60.0%
CTTGTTAACCAGTGCCCCCG+GGG - 15116:13498-13517 MS.gene054004:intergenic 60.0%
GCTGCTTAACCAATGCCCCG+GGG - 15116:13368-13387 MS.gene054004:intergenic 60.0%
GGGAGGCAACGGAAAAGGCA+AGG + 15116:12422-12441 MS.gene054004:CDS 60.0%
CGCACTATTGGGGCGGTAGC+TGG + 15116:12341-12360 MS.gene054004:CDS 65.0%
! TGCCCCCGGGGCACTTGTTA+AGG - 15116:13486-13505 MS.gene054004:intergenic 65.0%
AACCAGTGCCCCCGGGGCAT+TGG + 15116:13356-13375 MS.gene054004:intron 70.0%
! AACAAGTGCCCCGGGGGCAC+TGG + 15116:13487-13506 MS.gene054004:intron 70.0%
! AACCAATGCCCCGGGGGCAC+TGG - 15116:13361-13380 MS.gene054004:intergenic 70.0%


Chromosome Type Strat End Strand Name
15116 gene 11271 16109 11271 ID=MS.gene054004
15116 mRNA 11271 16109 11271 ID=MS.gene054004.t1;Parent=MS.gene054004
15116 exon 11271 11381 11271 ID=MS.gene054004.t1.exon1;Parent=MS.gene054004.t1
15116 CDS 11271 11381 11271 ID=cds.MS.gene054004.t1;Parent=MS.gene054004.t1
15116 exon 12335 12571 12335 ID=MS.gene054004.t1.exon2;Parent=MS.gene054004.t1
15116 CDS 12335 12571 12335 ID=cds.MS.gene054004.t1;Parent=MS.gene054004.t1
15116 exon 12715 12762 12715 ID=MS.gene054004.t1.exon3;Parent=MS.gene054004.t1
15116 CDS 12715 12762 12715 ID=cds.MS.gene054004.t1;Parent=MS.gene054004.t1
15116 exon 13750 13806 13750 ID=MS.gene054004.t1.exon4;Parent=MS.gene054004.t1
15116 CDS 13750 13806 13750 ID=cds.MS.gene054004.t1;Parent=MS.gene054004.t1
15116 exon 13895 13996 13895 ID=MS.gene054004.t1.exon5;Parent=MS.gene054004.t1
15116 CDS 13895 13996 13895 ID=cds.MS.gene054004.t1;Parent=MS.gene054004.t1
15116 exon 14778 14843 14778 ID=MS.gene054004.t1.exon6;Parent=MS.gene054004.t1
15116 CDS 14778 14843 14778 ID=cds.MS.gene054004.t1;Parent=MS.gene054004.t1
15116 exon 15783 15884 15783 ID=MS.gene054004.t1.exon7;Parent=MS.gene054004.t1
15116 CDS 15783 15884 15783 ID=cds.MS.gene054004.t1;Parent=MS.gene054004.t1
15116 exon 16005 16109 16005 ID=MS.gene054004.t1.exon8;Parent=MS.gene054004.t1
15116 CDS 16005 16109 16005 ID=cds.MS.gene054004.t1;Parent=MS.gene054004.t1
Gene Sequence

>MS.gene054004

ATGGCCGTGTCTGGTGGTGACAACGATGATGCCTCCAAACAAGACCTCTTTCACCTCATCAAACGCTTTGGTGCTTTTGTTACTTTCAAGATCGGTCATCTCTTCTCTCTCGTATTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTGCCTTTTTTCATCATTCTATTGGATCTGATATATGATATAAAAATCTTGTTATTGTTATTTTTTGTGATATATGATTGGTTCTATTTTAACTATTTTGTATGAAATTTTGATATTTTTGATGGATTTTTGGTGACCCTTTATTGTTGATTGAATGATTAGGAACCAGGGTTGGATAATTAACAACCTAAAGAGTGAAAGTTTGTTTTTTTGTTAGAAACTTTAAATGGGTTTTTTTTGCTTTTAATGTTGGGTGTGGGTAGAAACTAGGAAAAATGAGCTTTTATGTGTCATGGTTTTTGTCAAATTGGGGAAAAATTGTGACCTACTATGTATTTAAATAAGGTATGGTTTAAGTTGGATAGTATAAATGATCAATGTAATGTTTTGGTCTTTTTTTTGGAGCATGTGTAAATAAGGACTTTTACACTATCAATCAATAATGCTTGTTAAATTGTTAAAACATTTGTCTTCAATCATTACTACTTATAAAATTACATATATGATTAGAAACAACAACATTAAAGAGAGAGTTGGGGTAGCACCAATGGGAGAAAAGATGGTGGAGACCATGCTTAGGTGGTTTGGGCATATATTGCAGAGAGAAGACTTGTAGATTATGTATTAAGGAGAGTAGATTAGATGGAAGGTAGTCAGATCACTAGTGGTAGAGGAAGACCTGAAAAACTATAAGAGAAACTATTAGGACAGATCTAGAGATTAATGAGTTGGATCGAAATATGGTATATGATAATAGAACATGATGGTGTAGCTTGATCCATGTAGCTAATCCCACTTAGTGGGATAAGGCTCTCTTGGTTGTTGTTGTTGTCGACAATATAAAACTTTTGACACAAATAGTGTATCAAAATTAAACTCGTGTAAATATTCCAAAGCTCATGATATTGTACTTGTTATTAGGATATTCGCACTATTGGGGCGGTAGCTGGTCTTGCTGTTGCGATTGTTTTCACTTGGAGGTTGTTGAGATCTCCTAATCCTACACAAGGGAGGCAACGGAAAAGGCAAGGTGGTGCATCTAGTAATCCTGGAGCTAGCACAAATTCAAATGCGTCGGTTGTTCCTTCTGATGCTTCTTTACCTTCAGATGAATTACGGGCACAAAATGTTGTAGATGAGTTCTTTCAGCCAGTCAAGGTATGATGTTTTATTTTGTTTCCCACTTTCCTTTGCTTAATGATTCAGAATTCAGCCAATGCATGAATGTTTGTGGATTAATATCCGCTGTATTTTTTTATAGCTTTAGTATTCTAAGTTTGCTTTTTTCTGAATTTTTTCAGCCAACCTTGGGGCAGATAGTGAGGCAGAAGTTGAGTGAAGGAAGAAAGGTAATCAAACATATTCTCTCATGCACTCTTTATGTAGTAGTGGTGTGTGTTCCAGACTTAGTTTTATGGTTATTTATTATAGCCTTCTAGAAATTACCATCTCCTGCGATCATAAGAAATGTCGATTTGGGAGACCACCATTGTCTTAGAGTTTAAATTTTTAATCTACTTAAGGTTAAATTAACATGTCATGGCAAATTACCTGTTTATAGCTTTATAGATTAGAATTGTGTGACATATGTCAATTGATTGTTATTACTCCTAGAGTATACAACTTCCTAGGCTAGTGCTTACTAATTAAGCATTCAATGAATTTATTGTAAAACCATTATAAATACGAAGTGTGTGATCTCATTATAGACACACAATAGACAGAATTTACACGAAGTTTACATATTTTACAGACATCAATAAGAATCTCATTACTTTAGGGGAACTTAAAATAAGTATTCATCAAATTAATGCTTTGTAAGTTATTTATTTAAAAGCGAAGGTTGTAAGTAAAACCAGCTTTAAAATACAAGCTATGTTTATGTTTCTCTTTAGGTTAAAGGATAGTGCTTTAATTTGTTATATTTTTTTAGGAGAATGTTAACCAGTGCCCCCGGGGCATTGGTTAAGCAGCTAAAAGAGGTAAGATTTTATTAAAAAGTTGTGTAATAATTAGTTAGTCAAAAGTATCAGTTTATATTTCCAAGACAATTTTTCTACTTTTGGATTCCTTAACAAGTGCCCCGGGGGCACTGGTTAACAAGACCCATTTTTTTATTGTTTATCTTAATAAGTGGCACTGATACTATTCTTTTTCTCTTGATACATCTAAATAAGATTGTTATATGCATGTCTTTGTGCGATATAGTTGCGTATAAACTGGATGGGAATACTTGATGACATGAGGAACATTTATTTACAAGTTTGTGTTGTTAGTTGTTAAACGTTTGTTTGACCTATGTTTCCCGGCTATTATGACCAATAAGTTGTATGTAGGTGACCTGTCGTCTTCTTGGAGTGATCCTTGAGGAAAGTAGTCCAGAGGAGCTTCAGGTGTGAAATTGTCCTTTCGTATACTTTTGTTTTATTTTATGACATCAAAACAGAGTGATAACAATGCTCTTCATTCTGTTCTTTGCAGAACAAAGCAACTGTGAGATCCTCTGTGCTAGAAGTATTGTTGGAAATAACTAAATTCTGTGATTTATATCTCATGGACCGGGTTCTGGATGACGAAAGCGAGGTGTGTCACTTATCACCATATATTAATCACTCATCATGTCTTATGTAATGAACTTGATGGAAATGATGCACAATGCTTCATGTTATATGCTGCAAATTTACCATTTTTCAATGTTACGAATATTTTTTTATGACCGAATGATTCTGTAAAAATGAACTGGGATATGGCAGTTACTTGAAGCCAAAAATATCTTACCCTAAGATTCAGAATATGAAATTTAAGCTAGTTTTTTTTTTTTTTTTTTTTTTTTTTTGTAGAAATGATATTTGAACAACCATTTTTAAACAACTTTTGTGACAACTCTTTCTCTCTCATACTCTCGTTGTACTTTTATTCTATCTCTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTATATATATATATATATATATATATATATATATGTTATTGTCCAATAAGAAGAGACGAAAAAAGACTGTCACAAAAGTTGTTTAAAATTGGTTGTACAAATATCATTCCTCTTTTTTTTTAGGGAGAAATATAAGCTAGTTGCGACATTAGATATATGAAATTTCTTTATTATTTTATGATCTTTTCCTAGTTTGGAACACACATACTGTTAAGTTATTAATATCACGCAACTGCTATTTAAGCTAGTAGAGAGATTTCTTAAAGCAGTTAGTCTCAGATTTCGAACTAAATTTGATCTCAGGCCTAGTATTCCTCTTGCTACTCTGTTGTAGCATACAATATTGTTAAACTGATTACATTCTATCTTTATGTATGGATTATTTCTGCAGAAAAAAGTTCTTGTAGCGTTAGAAGAAGCAGGGGTATTCACTTCAGGTGGTTTGGTTAAGGACAAGGTATGTCATGTGAACACTCCTCAAACATTGTGTTTTTTTCTTTATAGAAGTTAACCACCTTCTTGCTGGGCAGTGTTGCACTTTACGTTTGTCAAGTTTGCATATAAAAAAATATATTTCTTTTTTATGTAGTCATCCTTTTGTGTGCTGTAGTTTACACATGTTGATTGACAACATGAGAATATCAATATCATTTTTATTTAACAATTTTAAACATTATCTTTGACTGTGAACATTTGCACGGATAGACATCTTGATCAGAGATGTCCTGAGAAACATCTTTTACCATTTTAAAGATTACCTTTAGAGAGAACCTTTACTCTTATCTAATTATTGTTTTTGTAGAAGAATTATGACTGATGTTGAGAAAACTGAAGACAAATTCAATGTGAAATAGTCTAGAAAATAAACCGTCATCATGACTAGGGAGGGGGGTCACAAATAATAATCATTATAGAATTTAATTACCATGCAAGGACAATGTAAAAGGTCTTACAAAAACATTCAATCATATATGCCTATCTAGAATCTAGAATCTATATATTTGTGAAGGTATTTTATGAACCAATATTATAACACGACACCATGGTAAAATATGATTGGAATCCTGTGCACTACTTTTTTATACTGGCAGTGCATAATTATTGAATTCATAATGATATATGTTTGTTGCCATTTGCTGGCTGTATATGCTCTTTTCAAGACATCCTTGGAACCTAAAATTCTGATGCCTGCAAGAGTTATATCTTGTCATTTGAGATGTTACAAAATTAGATGGCAACAAATACTCCGACAAAATTGTGATCTGTAGCAAATGTTTGTCTTGTGTATCTAATGAATGCTGTAAATGTCAATGAGCTCAATAAACCGATTGCTGCATACTTATGTTTTGAAACAACCTTTTTGTCCTCTATTTTGATATCCCATACCTATATGCAGGTTCTCTTCAGCAGCACTGAGAATGGACGCTCGTCATTTGTTCGTCAATTAGAACCAGATTGGCATATCGACACAAATCCCGAAATTGTCACCCAGTTAGCTGTATGTTACTATATATCTTGACTTCAATCAGCTAGTCAAATTCATGCTTTGAATAGTATTAAATTATTAATAACCATATCATTGTTTCTTTCTAATGATTAACAACAAATCATGTTGCAGAGGTTTATCAAGTATCAGCTCCACATAGCGCCTTATAAAACAGAACGAACTGCCGCTAATGTGTTCAGTGCTCCATCTTTGGAACTTTTCTTTGGATCCACATGA

Protein sequence

>MS.gene054004.t1

MAVSGGDNDDASKQDLFHLIKRFGAFVTFKIGHLFSLDIRTIGAVAGLAVAIVFTWRLLRSPNPTQGRQRKRQGGASSNPGASTNSNASVVPSDASLPSDELRAQNVVDEFFQPVKPTLGQIVRQKLSEGRKVTCRLLGVILEESSPEELQNKATVRSSVLEVLLEITKFCDLYLMDRVLDDESEKKVLVALEEAGVFTSGGLVKDKVLFSSTENGRSSFVRQLEPDWHIDTNPEIVTQLARFIKYQLHIAPYKTERTAANVFSAPSLELFFGST