Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06608.t1 | XP_003602380.1 | 94.7 | 506 | 26 | 1 | 1 | 505 | 1 | 506 | 1.50E-266 | 928.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06608.t1 | Q9FK23 | 49.5 | 493 | 243 | 4 | 1 | 491 | 1 | 489 | 8.7e-122 | 438.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06608.t1 | G7J8Z8 | 94.7 | 506 | 26 | 1 | 1 | 505 | 1 | 506 | 1.1e-266 | 928.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene06608.t1 | TR | mTERF |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene05087 | MS.gene06608 | 0.828541 | 8.49E-55 | -1.69E-46 |
| MS.gene054638 | MS.gene06608 | 0.831233 | 1.88E-55 | -1.69E-46 |
| MS.gene057148 | MS.gene06608 | 0.811798 | 5.85E-51 | -1.69E-46 |
| MS.gene06077 | MS.gene06608 | 0.811513 | 6.74E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06608.t1 | MTR_3g092710 | 94.664 | 506 | 26 | 1 | 1 | 505 | 1 | 506 | 0.0 | 966 |
| MS.gene06608.t1 | MTR_2g034600 | 25.641 | 312 | 181 | 11 | 186 | 490 | 276 | 543 | 3.25e-21 | 97.4 |
| MS.gene06608.t1 | MTR_2g034600 | 25.641 | 312 | 181 | 11 | 186 | 490 | 280 | 547 | 3.61e-21 | 97.1 |
| MS.gene06608.t1 | MTR_2g034600 | 25.641 | 312 | 181 | 11 | 186 | 490 | 215 | 482 | 3.88e-21 | 96.7 |
| MS.gene06608.t1 | MTR_4g084630 | 25.379 | 264 | 161 | 5 | 228 | 490 | 90 | 318 | 9.13e-15 | 75.9 |
| MS.gene06608.t1 | MTR_4g070060 | 20.745 | 376 | 240 | 12 | 140 | 468 | 200 | 564 | 2.28e-14 | 76.3 |
| MS.gene06608.t1 | MTR_4g120380 | 22.300 | 287 | 198 | 9 | 218 | 490 | 75 | 350 | 3.16e-13 | 71.6 |
| MS.gene06608.t1 | MTR_4g120380 | 21.927 | 301 | 210 | 9 | 204 | 490 | 61 | 350 | 4.20e-13 | 71.6 |
| MS.gene06608.t1 | MTR_1g115415 | 21.978 | 364 | 204 | 12 | 216 | 503 | 103 | 462 | 3.34e-12 | 68.9 |
| MS.gene06608.t1 | MTR_8g005155 | 30.147 | 136 | 88 | 2 | 363 | 493 | 407 | 540 | 8.76e-12 | 67.8 |
| MS.gene06608.t1 | MTR_6g003960 | 22.500 | 320 | 219 | 11 | 188 | 492 | 284 | 589 | 1.10e-11 | 67.8 |
| MS.gene06608.t1 | MTR_2g437030 | 23.051 | 295 | 198 | 8 | 212 | 490 | 153 | 434 | 2.80e-11 | 65.9 |
| MS.gene06608.t1 | MTR_5g068860 | 23.278 | 421 | 268 | 16 | 80 | 490 | 107 | 482 | 3.72e-11 | 65.9 |
| MS.gene06608.t1 | MTR_5g094610 | 24.809 | 262 | 152 | 7 | 224 | 474 | 230 | 457 | 6.38e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06608.t1 | AT5G54180 | 48.413 | 504 | 232 | 5 | 1 | 491 | 1 | 489 | 7.52e-155 | 451 |
| MS.gene06608.t1 | AT4G14605 | 28.000 | 250 | 164 | 10 | 247 | 490 | 228 | 467 | 3.66e-17 | 84.7 |
| MS.gene06608.t1 | AT4G14605 | 28.000 | 250 | 164 | 10 | 247 | 490 | 228 | 467 | 3.66e-17 | 84.7 |
| MS.gene06608.t1 | AT4G38160 | 26.923 | 260 | 172 | 8 | 225 | 470 | 46 | 301 | 4.76e-15 | 76.6 |
| MS.gene06608.t1 | AT4G38160 | 26.923 | 260 | 172 | 8 | 225 | 470 | 46 | 301 | 4.76e-15 | 76.6 |
| MS.gene06608.t1 | AT4G38160 | 26.923 | 260 | 172 | 8 | 225 | 470 | 46 | 301 | 8.25e-15 | 76.3 |
| MS.gene06608.t1 | AT4G38160 | 26.923 | 260 | 172 | 8 | 225 | 470 | 46 | 301 | 8.32e-15 | 76.6 |
| MS.gene06608.t1 | AT2G36000 | 29.545 | 220 | 135 | 8 | 267 | 473 | 81 | 293 | 1.06e-14 | 75.9 |
| MS.gene06608.t1 | AT2G36000 | 29.545 | 220 | 135 | 8 | 267 | 473 | 81 | 293 | 1.76e-14 | 74.7 |
| MS.gene06608.t1 | AT5G07900 | 25.000 | 260 | 177 | 7 | 235 | 483 | 121 | 373 | 2.17e-12 | 69.3 |
| MS.gene06608.t1 | AT2G03050 | 28.061 | 196 | 133 | 5 | 300 | 490 | 76 | 268 | 3.22e-12 | 67.8 |
| MS.gene06608.t1 | AT2G03050 | 28.061 | 196 | 133 | 5 | 300 | 490 | 77 | 269 | 3.35e-12 | 67.4 |
| MS.gene06608.t1 | AT2G44020 | 22.444 | 401 | 218 | 12 | 180 | 490 | 58 | 455 | 6.11e-12 | 68.2 |
| MS.gene06608.t1 | AT2G21710 | 22.517 | 302 | 218 | 7 | 177 | 468 | 276 | 571 | 4.53e-11 | 65.9 |
| MS.gene06608.t1 | AT5G55580 | 26.522 | 230 | 142 | 8 | 263 | 474 | 230 | 450 | 8.06e-11 | 64.7 |
Find 98 sgRNAs with CRISPR-Local
Find 114 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGAGCCTATTCTTGAACTA+TGG | 0.173687 | 3.3:+77405636 | MS.gene06608:CDS |
| TAAGATTGTGTTGGTGTTTC+CGG | 0.175674 | 3.3:+77405362 | MS.gene06608:CDS |
| ATGAAATAAAGAAGGGTTTA+AGG | 0.183717 | 3.3:+77405841 | MS.gene06608:CDS |
| TCCTTGAGAAATTGTATTCT+AGG | 0.235507 | 3.3:-77405420 | None:intergenic |
| TGAAACGTTGTTATAGAAAA+AGG | 0.303498 | 3.3:-77404394 | None:intergenic |
| TCAGTAAGAACTCTAATTCT+AGG | 0.304339 | 3.3:-77405201 | None:intergenic |
| GTCTCTTTATTTGAAGAATT+CGG | 0.325435 | 3.3:+77404691 | MS.gene06608:CDS |
| ACACTATAATTCAAGATAAT+AGG | 0.335022 | 3.3:-77405273 | None:intergenic |
| TAAAATCTGAATTGAAATAA+AGG | 0.346570 | 3.3:+77405943 | MS.gene06608:CDS |
| GTATTGGGAAAGTGCTGAAT+AGG | 0.369869 | 3.3:+77405247 | MS.gene06608:CDS |
| TCGTGACATTCAAGAGTTAC+TGG | 0.371309 | 3.3:+77405767 | MS.gene06608:CDS |
| AAGATGAGGGGAAAGGGTTG+AGG | 0.381106 | 3.3:-77404452 | None:intergenic |
| CCGAATGACACATTGACATT+GGG | 0.383638 | 3.3:-77404583 | None:intergenic |
| ATAGATTTCTTAAAACCCTT+TGG | 0.390276 | 3.3:+77405114 | MS.gene06608:CDS |
| TCAAGATTGGGTATAAATAT+AGG | 0.394877 | 3.3:+77405547 | MS.gene06608:CDS |
| GTTCGATTGCTTGTTGATAG+TGG | 0.398687 | 3.3:+77405000 | MS.gene06608:CDS |
| GGAAAGGGTTGAGGGTGAAC+GGG | 0.401945 | 3.3:-77404443 | None:intergenic |
| GTTGTTTGGTGGTGGTGATT+TGG | 0.403770 | 3.3:-77404503 | None:intergenic |
| CGAACCTTGCGTATAAGCTT+GGG | 0.418895 | 3.3:+77405517 | MS.gene06608:CDS |
| TTCAGTGACTAAGTGATTGA+TGG | 0.422092 | 3.3:-77404833 | None:intergenic |
| ATGTGGAGAATTTGATGGAT+AGG | 0.422481 | 3.3:-77404419 | None:intergenic |
| AGGGTTGAGTTTGAAGATGA+GGG | 0.427156 | 3.3:-77404465 | None:intergenic |
| GCGAACCTTGCGTATAAGCT+TGG | 0.427203 | 3.3:+77405516 | MS.gene06608:CDS |
| GTGGAGATGAGGATAGTATT+GGG | 0.438920 | 3.3:+77405232 | MS.gene06608:CDS |
| TGAACTTAACTCTATTCCAT+TGG | 0.447457 | 3.3:+77404756 | MS.gene06608:CDS |
| TAAATATTTGTTGATCATCA+AGG | 0.451246 | 3.3:-77405341 | None:intergenic |
| AAAACCCATAGTTCAAGAAT+AGG | 0.452781 | 3.3:-77405641 | None:intergenic |
| GGTGGAGATGAGGATAGTAT+TGG | 0.457275 | 3.3:+77405231 | MS.gene06608:CDS |
| AGTTTGAAGATGAGGGGAAA+GGG | 0.457788 | 3.3:-77404458 | None:intergenic |
| GGGAAAGGGTTGAGGGTGAA+CGG | 0.459402 | 3.3:-77404444 | None:intergenic |
| AGATGAGGGGAAAGGGTTGA+GGG | 0.459590 | 3.3:-77404451 | None:intergenic |
| ACATGTACAATCTTATCAAC+AGG | 0.460797 | 3.3:-77405027 | None:intergenic |
| TGAAATAAAGAAGGGTTTAA+GGG | 0.465888 | 3.3:+77405842 | MS.gene06608:CDS |
| TGTCGAAGGCGATTTGTCAT+AGG | 0.466844 | 3.3:+77405067 | MS.gene06608:CDS |
| CCCAATGTCAATGTGTCATT+CGG | 0.467017 | 3.3:+77404583 | MS.gene06608:CDS |
| CGGGAATGTGGAGAATTTGA+TGG | 0.467652 | 3.3:-77404424 | None:intergenic |
| CAGTTTCCTCTCTCTGCTAC+TGG | 0.469436 | 3.3:-77405394 | None:intergenic |
| GAAGATGGAGTACTTGATAG+AGG | 0.472033 | 3.3:+77405737 | MS.gene06608:CDS |
| TGAGCCTATTCTTGAACTAT+GGG | 0.472998 | 3.3:+77405637 | MS.gene06608:CDS |
| TTTATCTGGGTTTCCTCAGA+AGG | 0.474030 | 3.3:+77404978 | MS.gene06608:CDS |
| TGGTGGTGATTTGGCGAGGA+AGG | 0.485907 | 3.3:-77404494 | None:intergenic |
| GCACAGGTATGAAATAAAGA+AGG | 0.485986 | 3.3:+77405833 | MS.gene06608:CDS |
| GATTTCTTAAAACCCTTTGG+TGG | 0.492456 | 3.3:+77405117 | MS.gene06608:CDS |
| ACAAATATTTAAGATTGTGT+TGG | 0.499280 | 3.3:+77405353 | MS.gene06608:CDS |
| GTTGAGGGTGAACGGGAATG+TGG | 0.499616 | 3.3:-77404436 | None:intergenic |
| ACCGAATGACACATTGACAT+TGG | 0.500846 | 3.3:-77404584 | None:intergenic |
| AAATCACAATTGAGAATCAC+AGG | 0.505679 | 3.3:-77405162 | None:intergenic |
| AGAGTTCTTACTGAGTTAAG+TGG | 0.507100 | 3.3:+77405210 | MS.gene06608:CDS |
| TACAATTTCTCAAGGAATGT+GGG | 0.508650 | 3.3:+77405427 | MS.gene06608:CDS |
| TGATTTGGCGAGGAAGGAAA+AGG | 0.510218 | 3.3:-77404488 | None:intergenic |
| TGGGTATAAATATAGGACTA+AGG | 0.519559 | 3.3:+77405554 | MS.gene06608:CDS |
| AATGGAATAGAGTTAAGTTC+AGG | 0.520347 | 3.3:-77404754 | None:intergenic |
| GAGGGTTGAGTTTGAAGATG+AGG | 0.524128 | 3.3:-77404466 | None:intergenic |
| TGTGGAGAATTTGATGGATA+GGG | 0.526279 | 3.3:-77404418 | None:intergenic |
| GAGTTTGAAGATGAGGGGAA+AGG | 0.528061 | 3.3:-77404459 | None:intergenic |
| AGCTTGTATCCAAGAAATGC+AGG | 0.531555 | 3.3:-77405795 | None:intergenic |
| GTTTCAAGTGAGAACTTCAC+TGG | 0.532193 | 3.3:+77405897 | MS.gene06608:CDS |
| CTGCTACTGGTAAAGATAGC+CGG | 0.532788 | 3.3:-77405381 | None:intergenic |
| CACAGGTATGAAATAAAGAA+GGG | 0.544631 | 3.3:+77405834 | MS.gene06608:CDS |
| ACTACAGCGGCAACGGATGG+AGG | 0.545742 | 3.3:-77404551 | None:intergenic |
| GAAATAAAGAAGGGTTTAAG+GGG | 0.547648 | 3.3:+77405843 | MS.gene06608:CDS |
| ATACAATTTCTCAAGGAATG+TGG | 0.550137 | 3.3:+77405426 | MS.gene06608:CDS |
| ATCAAATGAATACCACCAAA+GGG | 0.550277 | 3.3:-77405129 | None:intergenic |
| GGGTTGAGTTTGAAGATGAG+GGG | 0.553523 | 3.3:-77404464 | None:intergenic |
| ATGGAATAGAGTTAAGTTCA+GGG | 0.553719 | 3.3:-77404753 | None:intergenic |
| GCTTATACGCAAGGTTCGCA+CGG | 0.556457 | 3.3:-77405512 | None:intergenic |
| CGATCACGCAATGAATCCAA+TGG | 0.559201 | 3.3:-77404772 | None:intergenic |
| TTTGGCGAGGAAGGAAAAGG+AGG | 0.566174 | 3.3:-77404485 | None:intergenic |
| TAACAAAGTAAATTTGTCGA+AGG | 0.566339 | 3.3:+77405053 | MS.gene06608:CDS |
| TATTATCTTGAATTATAGTG+TGG | 0.569717 | 3.3:+77405275 | MS.gene06608:CDS |
| AATCAAATGAATACCACCAA+AGG | 0.571779 | 3.3:-77405130 | None:intergenic |
| ACTACTACAGCGGCAACGGA+TGG | 0.574305 | 3.3:-77404554 | None:intergenic |
| TTGGCGAGGAAGGAAAAGGA+GGG | 0.574628 | 3.3:-77404484 | None:intergenic |
| TTATAGTGTGGAACATCTTG+AGG | 0.578549 | 3.3:+77405287 | MS.gene06608:CDS |
| ACAAGCAATCGAACCTTCTG+AGG | 0.581418 | 3.3:-77404991 | None:intergenic |
| CTCCATCTTCTTCTCTAGAG+AGG | 0.583295 | 3.3:-77405724 | None:intergenic |
| TGAGTTAAGTGGTGGAGATG+AGG | 0.587051 | 3.3:+77405221 | MS.gene06608:CDS |
| TGATTATACTGCAGTATCTG+AGG | 0.588367 | 3.3:-77405699 | None:intergenic |
| TCCTAGAATACAATTTCTCA+AGG | 0.589047 | 3.3:+77405419 | MS.gene06608:CDS |
| TGGAGGGTCGAAAATGAAAA+CGG | 0.589100 | 3.3:-77404534 | None:intergenic |
| GTTCTTACTGAGTTAAGTGG+TGG | 0.590069 | 3.3:+77405213 | MS.gene06608:CDS |
| TTGAGAAATCAAAGCTGAAG+CGG | 0.593691 | 3.3:+77404929 | MS.gene06608:CDS |
| CTACAGCGGCAACGGATGGA+GGG | 0.596461 | 3.3:-77404550 | None:intergenic |
| AGGAACATATAAAGTTTCTG+AGG | 0.600236 | 3.3:+77405307 | MS.gene06608:CDS |
| CTGTGAGAATATGCAGAAGA+TGG | 0.604021 | 3.3:+77405614 | MS.gene06608:CDS |
| TGCCTCTCTAGAGAAGAAGA+TGG | 0.604406 | 3.3:+77405722 | MS.gene06608:CDS |
| AAAACCCAAGCTTATACGCA+AGG | 0.605961 | 3.3:-77405521 | None:intergenic |
| AGTAACTACTACAGCGGCAA+CGG | 0.606334 | 3.3:-77404558 | None:intergenic |
| CGAATGACACATTGACATTG+GGG | 0.607372 | 3.3:-77404582 | None:intergenic |
| TTGATGACAGAATTAAGCAC+AGG | 0.607856 | 3.3:+77405817 | MS.gene06608:CDS |
| TCTTTACCAGTAGCAGAGAG+AGG | 0.644660 | 3.3:+77405388 | MS.gene06608:CDS |
| AAATAAAGAAGGGTTTAAGG+GGG | 0.657424 | 3.3:+77405844 | MS.gene06608:CDS |
| TGGAATAGAGTTAAGTTCAG+GGG | 0.673962 | 3.3:-77404752 | None:intergenic |
| AATAAAGAAGGGTTTAAGGG+GGG | 0.680018 | 3.3:+77405845 | MS.gene06608:CDS |
| TAGGACTAAGGAGTTAGCAG+TGG | 0.681301 | 3.3:+77405566 | MS.gene06608:CDS |
| TTGGTGGTGGTGATTTGGCG+AGG | 0.684582 | 3.3:-77404498 | None:intergenic |
| AATCACAATTGAGAATCACA+GGG | 0.722130 | 3.3:-77405161 | None:intergenic |
| GAATGACACATTGACATTGG+GGG | 0.758405 | 3.3:-77404581 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACACTATAATTCAAGATAAT+AGG | - | chr3.3:77405276-77405295 | None:intergenic | 20.0% |
| !! | TATTATCTTGAATTATAGTG+TGG | + | chr3.3:77405275-77405294 | MS.gene06608:CDS | 20.0% |
| !!! | ACAAATATTTAAGATTGTGT+TGG | + | chr3.3:77405353-77405372 | MS.gene06608:CDS | 20.0% |
| !!! | ATTTTATTTTTTCATGTTGC+AGG | + | chr3.3:77404661-77404680 | MS.gene06608:intron | 20.0% |
| !!! | TAAATATTTGTTGATCATCA+AGG | - | chr3.3:77405344-77405363 | None:intergenic | 20.0% |
| !!! | TTTTTGAGAAATGAATTACA+AGG | + | chr3.3:77404901-77404920 | MS.gene06608:CDS | 20.0% |
| ! | AATGAACCGAAAAATTTATC+TGG | + | chr3.3:77404964-77404983 | MS.gene06608:CDS | 25.0% |
| ! | ATAGATTTCTTAAAACCCTT+TGG | + | chr3.3:77405114-77405133 | MS.gene06608:CDS | 25.0% |
| ! | ATGAAATAAAGAAGGGTTTA+AGG | + | chr3.3:77405841-77405860 | MS.gene06608:CDS | 25.0% |
| ! | ATGAACCGAAAAATTTATCT+GGG | + | chr3.3:77404965-77404984 | MS.gene06608:CDS | 25.0% |
| ! | TAACAAAGTAAATTTGTCGA+AGG | + | chr3.3:77405053-77405072 | MS.gene06608:CDS | 25.0% |
| ! | TCAAGATTGGGTATAAATAT+AGG | + | chr3.3:77405547-77405566 | MS.gene06608:CDS | 25.0% |
| ! | TGAAACGTTGTTATAGAAAA+AGG | - | chr3.3:77404397-77404416 | None:intergenic | 25.0% |
| ! | TGAAATAAAGAAGGGTTTAA+GGG | + | chr3.3:77405842-77405861 | MS.gene06608:CDS | 25.0% |
| ! | TTTCTCAAAAAACTCAACAA+TGG | - | chr3.3:77404892-77404911 | None:intergenic | 25.0% |
| !! | GTCTCTTTATTTGAAGAATT+CGG | + | chr3.3:77404691-77404710 | MS.gene06608:CDS | 25.0% |
| !!! | GTTTTTTCATTATACTCTCT+CGG | + | chr3.3:77404796-77404815 | MS.gene06608:CDS | 25.0% |
| !!! | TTTTTTCATTATACTCTCTC+GGG | + | chr3.3:77404797-77404816 | MS.gene06608:CDS | 25.0% |
| AAAACCCATAGTTCAAGAAT+AGG | - | chr3.3:77405644-77405663 | None:intergenic | 30.0% | |
| AAATAAAGAAGGGTTTAAGG+GGG | + | chr3.3:77405844-77405863 | MS.gene06608:CDS | 30.0% | |
| AAATCACAATTGAGAATCAC+AGG | - | chr3.3:77405165-77405184 | None:intergenic | 30.0% | |
| AATCAAATGAATACCACCAA+AGG | - | chr3.3:77405133-77405152 | None:intergenic | 30.0% | |
| AATCACAATTGAGAATCACA+GGG | - | chr3.3:77405164-77405183 | None:intergenic | 30.0% | |
| AATGGAATAGAGTTAAGTTC+AGG | - | chr3.3:77404757-77404776 | None:intergenic | 30.0% | |
| ACATGTACAATCTTATCAAC+AGG | - | chr3.3:77405030-77405049 | None:intergenic | 30.0% | |
| AGGAACATATAAAGTTTCTG+AGG | + | chr3.3:77405307-77405326 | MS.gene06608:CDS | 30.0% | |
| ATACAATTTCTCAAGGAATG+TGG | + | chr3.3:77405426-77405445 | MS.gene06608:CDS | 30.0% | |
| ATCAAATGAATACCACCAAA+GGG | - | chr3.3:77405132-77405151 | None:intergenic | 30.0% | |
| ATGGAATAGAGTTAAGTTCA+GGG | - | chr3.3:77404756-77404775 | None:intergenic | 30.0% | |
| CACAGGTATGAAATAAAGAA+GGG | + | chr3.3:77405834-77405853 | MS.gene06608:CDS | 30.0% | |
| GAAAATGAAAACGGAAAAAG+TGG | - | chr3.3:77404528-77404547 | None:intergenic | 30.0% | |
| GAAATAAAGAAGGGTTTAAG+GGG | + | chr3.3:77405843-77405862 | MS.gene06608:CDS | 30.0% | |
| TACAATTTCTCAAGGAATGT+GGG | + | chr3.3:77405427-77405446 | MS.gene06608:CDS | 30.0% | |
| TCAGTAAGAACTCTAATTCT+AGG | - | chr3.3:77405204-77405223 | None:intergenic | 30.0% | |
| TCCTAGAATACAATTTCTCA+AGG | + | chr3.3:77405419-77405438 | MS.gene06608:CDS | 30.0% | |
| TCCTTGAGAAATTGTATTCT+AGG | - | chr3.3:77405423-77405442 | None:intergenic | 30.0% | |
| TGAACTTAACTCTATTCCAT+TGG | + | chr3.3:77404756-77404775 | MS.gene06608:CDS | 30.0% | |
| TGGGTATAAATATAGGACTA+AGG | + | chr3.3:77405554-77405573 | MS.gene06608:CDS | 30.0% | |
| ! | GGAAACCCAGATAAATTTTT+CGG | - | chr3.3:77404973-77404992 | None:intergenic | 30.0% |
| ! | TTGGGTTTTTGATCAAGATT+GGG | + | chr3.3:77405535-77405554 | MS.gene06608:CDS | 30.0% |
| AAACGGAAAAAGTGGTTGTT+TGG | - | chr3.3:77404520-77404539 | None:intergenic | 35.0% | |
| AATAAAGAAGGGTTTAAGGG+GGG | + | chr3.3:77405845-77405864 | MS.gene06608:CDS | 35.0% | |
| AGAGTTCTTACTGAGTTAAG+TGG | + | chr3.3:77405210-77405229 | MS.gene06608:CDS | 35.0% | |
| GATTTCTTAAAACCCTTTGG+TGG | + | chr3.3:77405117-77405136 | MS.gene06608:CDS | 35.0% | |
| GCACAGGTATGAAATAAAGA+AGG | + | chr3.3:77405833-77405852 | MS.gene06608:CDS | 35.0% | |
| TGAGCCTATTCTTGAACTAT+GGG | + | chr3.3:77405637-77405656 | MS.gene06608:CDS | 35.0% | |
| TGATTATACTGCAGTATCTG+AGG | - | chr3.3:77405702-77405721 | None:intergenic | 35.0% | |
| TGGAATAGAGTTAAGTTCAG+GGG | - | chr3.3:77404755-77404774 | None:intergenic | 35.0% | |
| TTATAGTGTGGAACATCTTG+AGG | + | chr3.3:77405287-77405306 | MS.gene06608:CDS | 35.0% | |
| TTCAGTGACTAAGTGATTGA+TGG | - | chr3.3:77404836-77404855 | None:intergenic | 35.0% | |
| TTGAGAAATCAAAGCTGAAG+CGG | + | chr3.3:77404929-77404948 | MS.gene06608:CDS | 35.0% | |
| ! | ATGTGGAGAATTTGATGGAT+AGG | - | chr3.3:77404422-77404441 | None:intergenic | 35.0% |
| ! | CTTGGGTTTTTGATCAAGAT+TGG | + | chr3.3:77405534-77405553 | MS.gene06608:CDS | 35.0% |
| ! | TAAGATTGTGTTGGTGTTTC+CGG | + | chr3.3:77405362-77405381 | MS.gene06608:CDS | 35.0% |
| ! | TGTGGAGAATTTGATGGATA+GGG | - | chr3.3:77404421-77404440 | None:intergenic | 35.0% |
| ! | TTGATGACAGAATTAAGCAC+AGG | + | chr3.3:77405817-77405836 | MS.gene06608:CDS | 35.0% |
| AAAACCCAAGCTTATACGCA+AGG | - | chr3.3:77405524-77405543 | None:intergenic | 40.0% | |
| ACCGAATGACACATTGACAT+TGG | - | chr3.3:77404587-77404606 | None:intergenic | 40.0% | |
| AGCTTGTATCCAAGAAATGC+AGG | - | chr3.3:77405798-77405817 | None:intergenic | 40.0% | |
| AGGGTTGAGTTTGAAGATGA+GGG | - | chr3.3:77404468-77404487 | None:intergenic | 40.0% | |
| AGTTTGAAGATGAGGGGAAA+GGG | - | chr3.3:77404461-77404480 | None:intergenic | 40.0% | |
| CCGAATGACACATTGACATT+GGG | - | chr3.3:77404586-77404605 | None:intergenic | 40.0% | |
| CGAATGACACATTGACATTG+GGG | - | chr3.3:77404585-77404604 | None:intergenic | 40.0% | |
| CTGTGAGAATATGCAGAAGA+TGG | + | chr3.3:77405614-77405633 | MS.gene06608:CDS | 40.0% | |
| GAATGACACATTGACATTGG+GGG | - | chr3.3:77404584-77404603 | None:intergenic | 40.0% | |
| GTGAGCCTATTCTTGAACTA+TGG | + | chr3.3:77405636-77405655 | MS.gene06608:CDS | 40.0% | |
| GTGGAGATGAGGATAGTATT+GGG | + | chr3.3:77405232-77405251 | MS.gene06608:CDS | 40.0% | |
| GTTCTTACTGAGTTAAGTGG+TGG | + | chr3.3:77405213-77405232 | MS.gene06608:CDS | 40.0% | |
| TCGTGACATTCAAGAGTTAC+TGG | + | chr3.3:77405767-77405786 | MS.gene06608:CDS | 40.0% | |
| TGGAGGGTCGAAAATGAAAA+CGG | - | chr3.3:77404537-77404556 | None:intergenic | 40.0% | |
| TTTATCTGGGTTTCCTCAGA+AGG | + | chr3.3:77404978-77404997 | MS.gene06608:CDS | 40.0% | |
| ! | AAAAAGTGGTTGTTTGGTGG+TGG | - | chr3.3:77404514-77404533 | None:intergenic | 40.0% |
| ! | CCCAATGTCAATGTGTCATT+CGG | + | chr3.3:77404583-77404602 | MS.gene06608:CDS | 40.0% |
| ! | CTGGATTTTCCTGCATTTCT+TGG | + | chr3.3:77405786-77405805 | MS.gene06608:CDS | 40.0% |
| ! | GAAGATGGAGTACTTGATAG+AGG | + | chr3.3:77405737-77405756 | MS.gene06608:CDS | 40.0% |
| ! | GTTCGATTGCTTGTTGATAG+TGG | + | chr3.3:77405000-77405019 | MS.gene06608:CDS | 40.0% |
| ! | GTTTCAAGTGAGAACTTCAC+TGG | + | chr3.3:77405897-77405916 | MS.gene06608:CDS | 40.0% |
| !! | GTATTGGGAAAGTGCTGAAT+AGG | + | chr3.3:77405247-77405266 | MS.gene06608:CDS | 40.0% |
| ACAAGCAATCGAACCTTCTG+AGG | - | chr3.3:77404994-77405013 | None:intergenic | 45.0% | |
| AGTAACTACTACAGCGGCAA+CGG | - | chr3.3:77404561-77404580 | None:intergenic | 45.0% | |
| CGAACCTTGCGTATAAGCTT+GGG | + | chr3.3:77405517-77405536 | MS.gene06608:CDS | 45.0% | |
| CGATCACGCAATGAATCCAA+TGG | - | chr3.3:77404775-77404794 | None:intergenic | 45.0% | |
| CGGAAAAAGTGGTTGTTTGG+TGG | - | chr3.3:77404517-77404536 | None:intergenic | 45.0% | |
| CGGGAATGTGGAGAATTTGA+TGG | - | chr3.3:77404427-77404446 | None:intergenic | 45.0% | |
| CTGCTACTGGTAAAGATAGC+CGG | - | chr3.3:77405384-77405403 | None:intergenic | 45.0% | |
| GAGGGTTGAGTTTGAAGATG+AGG | - | chr3.3:77404469-77404488 | None:intergenic | 45.0% | |
| GAGTTTGAAGATGAGGGGAA+AGG | - | chr3.3:77404462-77404481 | None:intergenic | 45.0% | |
| GCTCAAAAACAACGCTGCTT+TGG | - | chr3.3:77405484-77405503 | None:intergenic | 45.0% | |
| GGGTTGAGTTTGAAGATGAG+GGG | - | chr3.3:77404467-77404486 | None:intergenic | 45.0% | |
| GGTGGAGATGAGGATAGTAT+TGG | + | chr3.3:77405231-77405250 | MS.gene06608:CDS | 45.0% | |
| TAGGACTAAGGAGTTAGCAG+TGG | + | chr3.3:77405566-77405585 | MS.gene06608:CDS | 45.0% | |
| TCTTTACCAGTAGCAGAGAG+AGG | + | chr3.3:77405388-77405407 | MS.gene06608:CDS | 45.0% | |
| TGTCGAAGGCGATTTGTCAT+AGG | + | chr3.3:77405067-77405086 | MS.gene06608:CDS | 45.0% | |
| ! | CTCCATCTTCTTCTCTAGAG+AGG | - | chr3.3:77405727-77405746 | None:intergenic | 45.0% |
| ! | TGAGTTAAGTGGTGGAGATG+AGG | + | chr3.3:77405221-77405240 | MS.gene06608:CDS | 45.0% |
| ! | TGATTTGGCGAGGAAGGAAA+AGG | - | chr3.3:77404491-77404510 | None:intergenic | 45.0% |
| ! | TGCCTCTCTAGAGAAGAAGA+TGG | + | chr3.3:77405722-77405741 | MS.gene06608:CDS | 45.0% |
| !! | GTTGTTTGGTGGTGGTGATT+TGG | - | chr3.3:77404506-77404525 | None:intergenic | 45.0% |
| AAGATGAGGGGAAAGGGTTG+AGG | - | chr3.3:77404455-77404474 | None:intergenic | 50.0% | |
| AGATGAGGGGAAAGGGTTGA+GGG | - | chr3.3:77404454-77404473 | None:intergenic | 50.0% | |
| CAGTTTCCTCTCTCTGCTAC+TGG | - | chr3.3:77405397-77405416 | None:intergenic | 50.0% | |
| GCGAACCTTGCGTATAAGCT+TGG | + | chr3.3:77405516-77405535 | MS.gene06608:CDS | 50.0% | |
| GCTTATACGCAAGGTTCGCA+CGG | - | chr3.3:77405515-77405534 | None:intergenic | 50.0% | |
| TGGGGGAGTAACTACTACAG+CGG | - | chr3.3:77404567-77404586 | None:intergenic | 50.0% | |
| TTGGCGAGGAAGGAAAAGGA+GGG | - | chr3.3:77404487-77404506 | None:intergenic | 50.0% | |
| TTTGGCGAGGAAGGAAAAGG+AGG | - | chr3.3:77404488-77404507 | None:intergenic | 50.0% | |
| ACTACTACAGCGGCAACGGA+TGG | - | chr3.3:77404557-77404576 | None:intergenic | 55.0% | |
| GGAAAGGGTTGAGGGTGAAC+GGG | - | chr3.3:77404446-77404465 | None:intergenic | 55.0% | |
| GGGAAAGGGTTGAGGGTGAA+CGG | - | chr3.3:77404447-77404466 | None:intergenic | 55.0% | |
| GTTGAGGGTGAACGGGAATG+TGG | - | chr3.3:77404439-77404458 | None:intergenic | 55.0% | |
| ! | TGGTGGTGATTTGGCGAGGA+AGG | - | chr3.3:77404497-77404516 | None:intergenic | 55.0% |
| !! | TTGGTGGTGGTGATTTGGCG+AGG | - | chr3.3:77404501-77404520 | None:intergenic | 55.0% |
| ACTACAGCGGCAACGGATGG+AGG | - | chr3.3:77404554-77404573 | None:intergenic | 60.0% | |
| CTACAGCGGCAACGGATGGA+GGG | - | chr3.3:77404553-77404572 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 77404367 | 77405962 | 77404367 | ID=MS.gene06608 |
| chr3.3 | mRNA | 77404367 | 77405962 | 77404367 | ID=MS.gene06608.t1;Parent=MS.gene06608 |
| chr3.3 | exon | 77404367 | 77404604 | 77404367 | ID=MS.gene06608.t1.exon1;Parent=MS.gene06608.t1 |
| chr3.3 | CDS | 77404367 | 77404604 | 77404367 | ID=cds.MS.gene06608.t1;Parent=MS.gene06608.t1 |
| chr3.3 | exon | 77404683 | 77405962 | 77404683 | ID=MS.gene06608.t1.exon2;Parent=MS.gene06608.t1 |
| chr3.3 | CDS | 77404683 | 77405962 | 77404683 | ID=cds.MS.gene06608.t1;Parent=MS.gene06608.t1 |
| Gene Sequence |
| Protein sequence |
